Multiple sequence alignment - TraesCS5B01G031500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G031500 chr5B 100.000 3175 0 0 1 3175 34553999 34557173 0.000000e+00 5864.0
1 TraesCS5B01G031500 chr5B 99.010 1616 11 3 869 2480 34565573 34567187 0.000000e+00 2891.0
2 TraesCS5B01G031500 chr5B 94.181 842 48 1 1 841 34564735 34565576 0.000000e+00 1282.0
3 TraesCS5B01G031500 chr5B 85.844 770 56 24 739 1472 34544256 34545008 0.000000e+00 769.0
4 TraesCS5B01G031500 chr5B 87.983 466 39 5 2021 2478 34545300 34545756 4.660000e-148 534.0
5 TraesCS5B01G031500 chr5B 91.228 342 22 4 1667 2005 34545011 34545347 2.890000e-125 459.0
6 TraesCS5B01G031500 chr5B 82.469 405 48 12 1348 1750 34486260 34486643 1.830000e-87 333.0
7 TraesCS5B01G031500 chr5B 79.139 302 40 16 981 1264 34608823 34609119 1.500000e-43 187.0
8 TraesCS5B01G031500 chr5B 96.296 54 2 0 1102 1155 34619843 34619896 4.360000e-14 89.8
9 TraesCS5B01G031500 chr5B 96.154 52 2 0 2475 2526 72097179 72097128 5.640000e-13 86.1
10 TraesCS5B01G031500 chr2B 98.000 700 12 2 2477 3175 606777860 606778558 0.000000e+00 1214.0
11 TraesCS5B01G031500 chr5A 90.148 812 62 11 1282 2083 28905549 28906352 0.000000e+00 1040.0
12 TraesCS5B01G031500 chr5A 87.520 633 49 14 637 1244 28904922 28905549 0.000000e+00 704.0
13 TraesCS5B01G031500 chr5A 83.010 671 76 19 1 639 318098290 318098954 9.880000e-160 573.0
14 TraesCS5B01G031500 chr5A 86.106 511 57 8 1984 2480 28906208 28906718 3.600000e-149 538.0
15 TraesCS5B01G031500 chr5A 82.548 361 37 14 1182 1540 28761442 28761778 8.610000e-76 294.0
16 TraesCS5B01G031500 chr5A 91.163 215 16 2 1536 1750 28823051 28823262 4.010000e-74 289.0
17 TraesCS5B01G031500 chr7D 90.496 705 37 9 2479 3175 28029380 28028698 0.000000e+00 904.0
18 TraesCS5B01G031500 chr7D 82.353 187 29 4 2992 3175 28028576 28028391 3.280000e-35 159.0
19 TraesCS5B01G031500 chr7D 96.078 51 2 0 2478 2528 631440629 631440579 2.030000e-12 84.2
20 TraesCS5B01G031500 chr5D 86.310 767 71 14 637 1377 40760133 40760891 0.000000e+00 804.0
21 TraesCS5B01G031500 chr5D 82.174 1021 99 30 1042 2024 40889021 40889996 0.000000e+00 800.0
22 TraesCS5B01G031500 chr5D 91.929 508 23 7 1984 2480 40766414 40766914 0.000000e+00 695.0
23 TraesCS5B01G031500 chr5D 94.851 369 11 3 1667 2032 40766141 40766504 1.280000e-158 569.0
24 TraesCS5B01G031500 chr5D 83.394 554 73 7 1 537 65264014 65264565 2.200000e-136 496.0
25 TraesCS5B01G031500 chr5D 87.111 450 40 7 1302 1750 40745831 40746263 7.910000e-136 494.0
26 TraesCS5B01G031500 chr5D 80.438 639 80 23 23 637 260116976 260116359 2.250000e-121 446.0
27 TraesCS5B01G031500 chr5D 83.827 371 49 6 1 364 564674017 564673651 3.030000e-90 342.0
28 TraesCS5B01G031500 chr5D 85.057 261 23 6 2057 2307 40889945 40890199 5.260000e-63 252.0
29 TraesCS5B01G031500 chr5D 96.154 52 2 0 2477 2528 41885143 41885092 5.640000e-13 86.1
30 TraesCS5B01G031500 chr5D 90.909 44 4 0 2426 2469 40783727 40783770 3.420000e-05 60.2
31 TraesCS5B01G031500 chr2D 87.500 704 72 11 2478 3175 482905365 482906058 0.000000e+00 798.0
32 TraesCS5B01G031500 chr2D 83.558 669 81 12 1 642 45721529 45722195 1.630000e-167 599.0
33 TraesCS5B01G031500 chr2D 83.871 651 82 15 9 642 513332624 513333268 1.630000e-167 599.0
34 TraesCS5B01G031500 chr2D 82.836 670 81 16 1 639 131003878 131004544 1.280000e-158 569.0
35 TraesCS5B01G031500 chr2D 82.036 668 93 13 1 646 318631593 318630931 7.750000e-151 544.0
36 TraesCS5B01G031500 chr2D 81.818 187 28 4 2992 3175 482905977 482906160 5.490000e-33 152.0
37 TraesCS5B01G031500 chr4A 85.479 606 67 9 1 587 176594276 176594879 2.090000e-171 612.0
38 TraesCS5B01G031500 chr4A 82.569 545 71 11 115 642 38347075 38347612 2.890000e-125 459.0
39 TraesCS5B01G031500 chr6B 82.789 674 78 21 1 642 476021675 476022342 4.600000e-158 568.0
40 TraesCS5B01G031500 chr6B 81.383 188 28 5 2991 3175 588310624 588310807 2.550000e-31 147.0
41 TraesCS5B01G031500 chr6B 78.495 186 37 3 2993 3175 260783547 260783362 5.560000e-23 119.0
42 TraesCS5B01G031500 chr1B 82.663 646 88 11 1 629 265972246 265971608 4.630000e-153 551.0
43 TraesCS5B01G031500 chr1B 86.875 160 18 3 3018 3175 653040856 653041014 3.250000e-40 176.0
44 TraesCS5B01G031500 chr1B 95.918 49 2 0 2478 2526 508566975 508567023 2.630000e-11 80.5
45 TraesCS5B01G031500 chr1D 82.883 555 72 13 110 645 479829939 479829389 7.970000e-131 477.0
46 TraesCS5B01G031500 chr1D 87.347 245 23 4 1 238 479223091 479222848 1.120000e-69 274.0
47 TraesCS5B01G031500 chr1D 96.154 52 2 0 2477 2528 397641308 397641359 5.640000e-13 86.1
48 TraesCS5B01G031500 chr3B 79.638 663 91 19 1 645 771396866 771396230 1.350000e-118 436.0
49 TraesCS5B01G031500 chr7B 79.879 497 79 9 163 642 517622081 517621589 8.430000e-91 344.0
50 TraesCS5B01G031500 chr7A 78.804 184 37 2 2992 3175 74985446 74985265 4.300000e-24 122.0
51 TraesCS5B01G031500 chr1A 92.982 57 4 0 2468 2524 41397677 41397621 2.030000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G031500 chr5B 34553999 34557173 3174 False 5864.000000 5864 100.000000 1 3175 1 chr5B.!!$F2 3174
1 TraesCS5B01G031500 chr5B 34564735 34567187 2452 False 2086.500000 2891 96.595500 1 2480 2 chr5B.!!$F6 2479
2 TraesCS5B01G031500 chr5B 34544256 34545756 1500 False 587.333333 769 88.351667 739 2478 3 chr5B.!!$F5 1739
3 TraesCS5B01G031500 chr2B 606777860 606778558 698 False 1214.000000 1214 98.000000 2477 3175 1 chr2B.!!$F1 698
4 TraesCS5B01G031500 chr5A 28904922 28906718 1796 False 760.666667 1040 87.924667 637 2480 3 chr5A.!!$F4 1843
5 TraesCS5B01G031500 chr5A 318098290 318098954 664 False 573.000000 573 83.010000 1 639 1 chr5A.!!$F3 638
6 TraesCS5B01G031500 chr7D 28028391 28029380 989 True 531.500000 904 86.424500 2479 3175 2 chr7D.!!$R2 696
7 TraesCS5B01G031500 chr5D 40760133 40760891 758 False 804.000000 804 86.310000 637 1377 1 chr5D.!!$F2 740
8 TraesCS5B01G031500 chr5D 40766141 40766914 773 False 632.000000 695 93.390000 1667 2480 2 chr5D.!!$F5 813
9 TraesCS5B01G031500 chr5D 40889021 40890199 1178 False 526.000000 800 83.615500 1042 2307 2 chr5D.!!$F6 1265
10 TraesCS5B01G031500 chr5D 65264014 65264565 551 False 496.000000 496 83.394000 1 537 1 chr5D.!!$F4 536
11 TraesCS5B01G031500 chr5D 260116359 260116976 617 True 446.000000 446 80.438000 23 637 1 chr5D.!!$R2 614
12 TraesCS5B01G031500 chr2D 45721529 45722195 666 False 599.000000 599 83.558000 1 642 1 chr2D.!!$F1 641
13 TraesCS5B01G031500 chr2D 513332624 513333268 644 False 599.000000 599 83.871000 9 642 1 chr2D.!!$F3 633
14 TraesCS5B01G031500 chr2D 131003878 131004544 666 False 569.000000 569 82.836000 1 639 1 chr2D.!!$F2 638
15 TraesCS5B01G031500 chr2D 318630931 318631593 662 True 544.000000 544 82.036000 1 646 1 chr2D.!!$R1 645
16 TraesCS5B01G031500 chr2D 482905365 482906160 795 False 475.000000 798 84.659000 2478 3175 2 chr2D.!!$F4 697
17 TraesCS5B01G031500 chr4A 176594276 176594879 603 False 612.000000 612 85.479000 1 587 1 chr4A.!!$F2 586
18 TraesCS5B01G031500 chr4A 38347075 38347612 537 False 459.000000 459 82.569000 115 642 1 chr4A.!!$F1 527
19 TraesCS5B01G031500 chr6B 476021675 476022342 667 False 568.000000 568 82.789000 1 642 1 chr6B.!!$F1 641
20 TraesCS5B01G031500 chr1B 265971608 265972246 638 True 551.000000 551 82.663000 1 629 1 chr1B.!!$R1 628
21 TraesCS5B01G031500 chr1D 479829389 479829939 550 True 477.000000 477 82.883000 110 645 1 chr1D.!!$R2 535
22 TraesCS5B01G031500 chr3B 771396230 771396866 636 True 436.000000 436 79.638000 1 645 1 chr3B.!!$R1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 574 0.037877 TCCGAGTTCTCCTCCTCGTT 59.962 55.0 8.08 0.0 46.91 3.85 F
1971 2103 0.247460 TGACGAGGAGGCTGACAATG 59.753 55.0 0.00 0.0 0.00 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 2108 0.178935 CATCCTCCTCCTCCTCCTCC 60.179 65.00 0.0 0.0 0.0 4.30 R
2935 3123 5.011090 ACATACACAGTAAGACATGCGAT 57.989 39.13 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 250 3.259876 TCCGTGCACTTCTGGTAAACTAT 59.740 43.478 16.19 0.00 0.00 2.12
246 268 0.255033 ATAGAAGCCAACCGTTCCCC 59.745 55.000 0.00 0.00 0.00 4.81
328 350 0.322975 AAGACAGTCTTGCGCATCCT 59.677 50.000 12.75 4.28 34.98 3.24
388 414 0.790814 GCAAAGTAGTCGTCCAGCAC 59.209 55.000 0.00 0.00 0.00 4.40
396 426 0.529773 GTCGTCCAGCACTGTCAACA 60.530 55.000 0.00 0.00 0.00 3.33
447 478 1.486726 ACCCTTAATCGAGCCCTTGAG 59.513 52.381 0.00 0.00 0.00 3.02
530 574 0.037877 TCCGAGTTCTCCTCCTCGTT 59.962 55.000 8.08 0.00 46.91 3.85
717 786 0.392998 GTCTGGACCGGCATGAATGT 60.393 55.000 0.00 0.00 0.00 2.71
728 797 1.536940 CATGAATGTGGCACTGACCA 58.463 50.000 19.83 11.47 37.38 4.02
734 803 3.544772 TGGCACTGACCACTTCGA 58.455 55.556 0.00 0.00 33.75 3.71
812 885 7.649705 CCACTAGTAAACTGTACTATGATGCAG 59.350 40.741 0.00 0.00 35.31 4.41
821 894 6.603599 ACTGTACTATGATGCAGTGAAGACTA 59.396 38.462 0.00 0.00 40.24 2.59
856 929 4.271049 GCTGCATGATTGACGTGTACTATT 59.729 41.667 0.00 0.00 37.77 1.73
857 930 5.220662 GCTGCATGATTGACGTGTACTATTT 60.221 40.000 0.00 0.00 37.77 1.40
863 936 8.869897 CATGATTGACGTGTACTATTTTACAGT 58.130 33.333 0.00 0.00 32.53 3.55
882 955 1.606668 GTTTTTCATGTGCGGGACTGA 59.393 47.619 0.31 0.00 0.00 3.41
1080 1173 6.294955 GCCAAGAGAAGAAGAACAAAATGGAT 60.295 38.462 0.00 0.00 0.00 3.41
1956 2088 2.115911 CCCGAGGAGGAGACTGACG 61.116 68.421 0.00 0.00 44.43 4.35
1963 2095 1.379309 AGGAGACTGACGAGGAGGC 60.379 63.158 0.00 0.00 41.13 4.70
1964 2096 1.379309 GGAGACTGACGAGGAGGCT 60.379 63.158 0.00 0.00 0.00 4.58
1966 2098 0.678366 GAGACTGACGAGGAGGCTGA 60.678 60.000 0.00 0.00 0.00 4.26
1967 2099 0.963355 AGACTGACGAGGAGGCTGAC 60.963 60.000 0.00 0.00 0.00 3.51
1968 2100 1.228583 ACTGACGAGGAGGCTGACA 60.229 57.895 0.00 0.00 0.00 3.58
1969 2101 0.827925 ACTGACGAGGAGGCTGACAA 60.828 55.000 0.00 0.00 0.00 3.18
1970 2102 0.534412 CTGACGAGGAGGCTGACAAT 59.466 55.000 0.00 0.00 0.00 2.71
1971 2103 0.247460 TGACGAGGAGGCTGACAATG 59.753 55.000 0.00 0.00 0.00 2.82
1972 2104 0.532573 GACGAGGAGGCTGACAATGA 59.467 55.000 0.00 0.00 0.00 2.57
1973 2105 0.976641 ACGAGGAGGCTGACAATGAA 59.023 50.000 0.00 0.00 0.00 2.57
1974 2106 1.066573 ACGAGGAGGCTGACAATGAAG 60.067 52.381 0.00 0.00 0.00 3.02
1975 2107 1.205655 CGAGGAGGCTGACAATGAAGA 59.794 52.381 0.00 0.00 0.00 2.87
1976 2108 2.738000 CGAGGAGGCTGACAATGAAGAG 60.738 54.545 0.00 0.00 0.00 2.85
1977 2109 1.558756 AGGAGGCTGACAATGAAGAGG 59.441 52.381 0.00 0.00 0.00 3.69
1978 2110 1.556911 GGAGGCTGACAATGAAGAGGA 59.443 52.381 0.00 0.00 0.00 3.71
1979 2111 2.419851 GGAGGCTGACAATGAAGAGGAG 60.420 54.545 0.00 0.00 0.00 3.69
1980 2112 1.558756 AGGCTGACAATGAAGAGGAGG 59.441 52.381 0.00 0.00 0.00 4.30
1981 2113 1.556911 GGCTGACAATGAAGAGGAGGA 59.443 52.381 0.00 0.00 0.00 3.71
1982 2114 2.419851 GGCTGACAATGAAGAGGAGGAG 60.420 54.545 0.00 0.00 0.00 3.69
1983 2115 2.419851 GCTGACAATGAAGAGGAGGAGG 60.420 54.545 0.00 0.00 0.00 4.30
1984 2116 3.102972 CTGACAATGAAGAGGAGGAGGA 58.897 50.000 0.00 0.00 0.00 3.71
1985 2117 3.102972 TGACAATGAAGAGGAGGAGGAG 58.897 50.000 0.00 0.00 0.00 3.69
1986 2118 2.433970 GACAATGAAGAGGAGGAGGAGG 59.566 54.545 0.00 0.00 0.00 4.30
1987 2119 2.045047 ACAATGAAGAGGAGGAGGAGGA 59.955 50.000 0.00 0.00 0.00 3.71
1988 2120 2.699846 CAATGAAGAGGAGGAGGAGGAG 59.300 54.545 0.00 0.00 0.00 3.69
1989 2121 0.633921 TGAAGAGGAGGAGGAGGAGG 59.366 60.000 0.00 0.00 0.00 4.30
1990 2122 0.930726 GAAGAGGAGGAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
1991 2123 0.933700 AAGAGGAGGAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
2041 2206 1.219213 GGAGGAGGAGGATGAAGAGGA 59.781 57.143 0.00 0.00 0.00 3.71
2064 2229 2.836262 CTGACAATGAGGATGAGGAGC 58.164 52.381 0.00 0.00 0.00 4.70
2155 2327 1.269465 CGATCAGACTGACGATGGCAT 60.269 52.381 7.47 0.00 0.00 4.40
2396 2579 9.926158 ACATTTCATTTGTTGAGTAATTATGCA 57.074 25.926 0.00 0.00 35.27 3.96
2538 2722 1.405463 CTCAGTCGATCGAACCATCCA 59.595 52.381 21.31 0.00 0.00 3.41
2935 3123 2.497138 CTGTTCTGAGCACACATTCCA 58.503 47.619 0.00 0.00 0.00 3.53
2979 3168 1.546323 CCTTGAGGTGTGTGAATGCCT 60.546 52.381 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 250 1.681076 GGGGAACGGTTGGCTTCTA 59.319 57.895 0.00 0.00 0.00 2.10
246 268 3.210857 TCTTGAAGAAAGACGCCGG 57.789 52.632 0.00 0.00 40.09 6.13
328 350 1.955080 ACCATTTTCGCCGGTGTTTTA 59.045 42.857 16.01 0.00 0.00 1.52
396 426 1.752694 AACCGCAACAAGGCACACT 60.753 52.632 0.00 0.00 0.00 3.55
447 478 2.941720 GTGGAGGAGCATGTTCTCAATC 59.058 50.000 9.57 3.54 34.84 2.67
530 574 3.660501 AGCACTATGTTGAGTCGTTCA 57.339 42.857 0.00 0.00 0.00 3.18
654 723 3.797796 GCCGGAATTAAAACGTGTTTGTT 59.202 39.130 5.05 0.00 32.36 2.83
658 727 2.227149 GGAGCCGGAATTAAAACGTGTT 59.773 45.455 5.05 0.00 0.00 3.32
717 786 1.367471 CTCGAAGTGGTCAGTGCCA 59.633 57.895 2.57 2.57 35.93 4.92
728 797 0.035458 CACCCTTTCCTGCTCGAAGT 59.965 55.000 0.00 0.00 0.00 3.01
734 803 2.282745 GCTGCACCCTTTCCTGCT 60.283 61.111 0.00 0.00 34.29 4.24
812 885 2.350522 CCAGGCACATGTAGTCTTCAC 58.649 52.381 0.00 0.00 0.00 3.18
821 894 3.595428 ATGCAGCCCAGGCACATGT 62.595 57.895 12.03 0.00 45.23 3.21
856 929 3.632604 TCCCGCACATGAAAAACTGTAAA 59.367 39.130 0.00 0.00 0.00 2.01
857 930 3.003897 GTCCCGCACATGAAAAACTGTAA 59.996 43.478 0.00 0.00 0.00 2.41
863 936 1.974265 TCAGTCCCGCACATGAAAAA 58.026 45.000 0.00 0.00 0.00 1.94
882 955 8.131100 CGCACAGGTCATGAAATATTTTCTATT 58.869 33.333 1.43 0.00 0.00 1.73
1051 1138 5.757850 TTGTTCTTCTTCTCTTGGCTTTC 57.242 39.130 0.00 0.00 0.00 2.62
1442 1565 4.002906 AGTGAGCTTGGAACGTGAATAA 57.997 40.909 0.00 0.00 0.00 1.40
1956 2088 2.419851 CCTCTTCATTGTCAGCCTCCTC 60.420 54.545 0.00 0.00 0.00 3.71
1963 2095 3.102972 TCCTCCTCCTCTTCATTGTCAG 58.897 50.000 0.00 0.00 0.00 3.51
1964 2096 3.102972 CTCCTCCTCCTCTTCATTGTCA 58.897 50.000 0.00 0.00 0.00 3.58
1966 2098 2.045047 TCCTCCTCCTCCTCTTCATTGT 59.955 50.000 0.00 0.00 0.00 2.71
1967 2099 2.699846 CTCCTCCTCCTCCTCTTCATTG 59.300 54.545 0.00 0.00 0.00 2.82
1968 2100 2.360209 CCTCCTCCTCCTCCTCTTCATT 60.360 54.545 0.00 0.00 0.00 2.57
1969 2101 1.220236 CCTCCTCCTCCTCCTCTTCAT 59.780 57.143 0.00 0.00 0.00 2.57
1970 2102 0.633921 CCTCCTCCTCCTCCTCTTCA 59.366 60.000 0.00 0.00 0.00 3.02
1971 2103 0.930726 TCCTCCTCCTCCTCCTCTTC 59.069 60.000 0.00 0.00 0.00 2.87
1972 2104 0.933700 CTCCTCCTCCTCCTCCTCTT 59.066 60.000 0.00 0.00 0.00 2.85
1973 2105 0.998945 CCTCCTCCTCCTCCTCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
1974 2106 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1975 2107 0.330431 ATCCTCCTCCTCCTCCTCCT 60.330 60.000 0.00 0.00 0.00 3.69
1976 2108 0.178935 CATCCTCCTCCTCCTCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
1977 2109 0.856982 TCATCCTCCTCCTCCTCCTC 59.143 60.000 0.00 0.00 0.00 3.71
1978 2110 1.220236 CTTCATCCTCCTCCTCCTCCT 59.780 57.143 0.00 0.00 0.00 3.69
1979 2111 1.219213 TCTTCATCCTCCTCCTCCTCC 59.781 57.143 0.00 0.00 0.00 4.30
1980 2112 2.597455 CTCTTCATCCTCCTCCTCCTC 58.403 57.143 0.00 0.00 0.00 3.71
1981 2113 1.220236 CCTCTTCATCCTCCTCCTCCT 59.780 57.143 0.00 0.00 0.00 3.69
1982 2114 1.219213 TCCTCTTCATCCTCCTCCTCC 59.781 57.143 0.00 0.00 0.00 4.30
1983 2115 2.597455 CTCCTCTTCATCCTCCTCCTC 58.403 57.143 0.00 0.00 0.00 3.71
1984 2116 1.220236 CCTCCTCTTCATCCTCCTCCT 59.780 57.143 0.00 0.00 0.00 3.69
1985 2117 1.715785 CCTCCTCTTCATCCTCCTCC 58.284 60.000 0.00 0.00 0.00 4.30
1986 2118 1.047801 GCCTCCTCTTCATCCTCCTC 58.952 60.000 0.00 0.00 0.00 3.71
1987 2119 0.641601 AGCCTCCTCTTCATCCTCCT 59.358 55.000 0.00 0.00 0.00 3.69
1988 2120 0.758123 CAGCCTCCTCTTCATCCTCC 59.242 60.000 0.00 0.00 0.00 4.30
1989 2121 1.412343 GTCAGCCTCCTCTTCATCCTC 59.588 57.143 0.00 0.00 0.00 3.71
1990 2122 1.273495 TGTCAGCCTCCTCTTCATCCT 60.273 52.381 0.00 0.00 0.00 3.24
1991 2123 1.198713 TGTCAGCCTCCTCTTCATCC 58.801 55.000 0.00 0.00 0.00 3.51
2041 2206 1.489649 CCTCATCCTCATTGTCAGCCT 59.510 52.381 0.00 0.00 0.00 4.58
2064 2229 2.422231 CGTCAGCCTCCTCCTCCTG 61.422 68.421 0.00 0.00 0.00 3.86
2155 2327 0.902984 TTAGCTGAGGTCCTCGCCAA 60.903 55.000 23.51 17.25 33.20 4.52
2471 2654 7.177041 ACTGATTTTTAGCCCAACCGTAATAAA 59.823 33.333 0.00 0.00 0.00 1.40
2646 2833 2.267642 CCCTCACGCGAATCCCAA 59.732 61.111 15.93 0.00 0.00 4.12
2935 3123 5.011090 ACATACACAGTAAGACATGCGAT 57.989 39.130 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.