Multiple sequence alignment - TraesCS5B01G031200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G031200 chr5B 100.000 5040 0 0 1 5040 34248661 34253700 0.000000e+00 9308.0
1 TraesCS5B01G031200 chr5B 92.447 3469 132 46 1 3404 34037649 34041052 0.000000e+00 4835.0
2 TraesCS5B01G031200 chr5B 89.781 1732 135 22 1022 2733 34768365 34766656 0.000000e+00 2180.0
3 TraesCS5B01G031200 chr5B 94.872 780 37 3 3524 4303 34041202 34041978 0.000000e+00 1216.0
4 TraesCS5B01G031200 chr5B 78.416 1654 257 50 1022 2625 34742697 34744300 0.000000e+00 985.0
5 TraesCS5B01G031200 chr5B 84.990 493 68 3 3628 4119 34765597 34765110 3.500000e-136 496.0
6 TraesCS5B01G031200 chr5B 79.798 594 106 8 1306 1893 34726548 34727133 2.170000e-113 420.0
7 TraesCS5B01G031200 chr5B 76.996 526 55 32 2391 2862 34766644 34766131 1.810000e-59 241.0
8 TraesCS5B01G031200 chr5B 89.600 125 12 1 4917 5040 34259521 34259645 1.880000e-34 158.0
9 TraesCS5B01G031200 chr5B 87.037 54 7 0 4985 5038 34542612 34542665 1.520000e-05 62.1
10 TraesCS5B01G031200 chr5A 91.621 2578 127 34 810 3317 28697112 28699670 0.000000e+00 3482.0
11 TraesCS5B01G031200 chr5A 86.242 1163 102 33 1749 2862 29125915 29124762 0.000000e+00 1208.0
12 TraesCS5B01G031200 chr5A 91.581 677 48 6 3578 4254 28699891 28700558 0.000000e+00 926.0
13 TraesCS5B01G031200 chr5A 91.763 607 39 6 1022 1627 29126512 29125916 0.000000e+00 833.0
14 TraesCS5B01G031200 chr5A 79.897 582 100 14 1022 1593 29118324 29118898 1.310000e-110 411.0
15 TraesCS5B01G031200 chr5A 90.221 317 15 8 4736 5040 28702132 28702444 2.830000e-107 399.0
16 TraesCS5B01G031200 chr5A 90.043 231 16 5 4324 4551 28701635 28701861 4.940000e-75 292.0
17 TraesCS5B01G031200 chr5A 83.729 295 24 11 1159 1451 28113707 28113435 1.800000e-64 257.0
18 TraesCS5B01G031200 chr5A 81.343 268 23 10 4785 5027 29123189 29122924 5.150000e-45 193.0
19 TraesCS5B01G031200 chr5A 90.400 125 11 1 4917 5040 28755425 28755549 4.040000e-36 163.0
20 TraesCS5B01G031200 chr5A 94.286 70 3 1 4672 4740 28701858 28701927 6.900000e-19 106.0
21 TraesCS5B01G031200 chr5A 88.889 54 6 0 4985 5038 28903331 28903384 3.260000e-07 67.6
22 TraesCS5B01G031200 chr5D 91.788 2533 122 26 941 3407 40715664 40718176 0.000000e+00 3446.0
23 TraesCS5B01G031200 chr5D 90.064 1731 131 22 1022 2728 40923507 40921794 0.000000e+00 2206.0
24 TraesCS5B01G031200 chr5D 93.885 785 43 4 3522 4303 40718200 40718982 0.000000e+00 1179.0
25 TraesCS5B01G031200 chr5D 79.375 1600 237 52 1022 2575 40915008 40916560 0.000000e+00 1040.0
26 TraesCS5B01G031200 chr5D 82.824 687 83 15 3628 4307 40921214 40920556 2.620000e-162 582.0
27 TraesCS5B01G031200 chr5D 83.842 557 71 17 115 663 40714909 40715454 3.480000e-141 512.0
28 TraesCS5B01G031200 chr5D 88.330 437 25 13 4324 4740 40720163 40720593 7.530000e-138 501.0
29 TraesCS5B01G031200 chr5D 94.771 306 15 1 4736 5040 40720636 40720941 4.570000e-130 475.0
30 TraesCS5B01G031200 chr5D 80.977 389 54 8 3025 3400 40921724 40921343 1.780000e-74 291.0
31 TraesCS5B01G031200 chr5D 81.655 278 24 10 4775 5027 40920210 40919935 6.610000e-49 206.0
32 TraesCS5B01G031200 chr5D 90.196 102 8 2 3428 3528 556009426 556009326 1.140000e-26 132.0
33 TraesCS5B01G031200 chr4B 78.905 1607 239 55 1022 2575 628579155 628577596 0.000000e+00 998.0
34 TraesCS5B01G031200 chr4B 78.295 258 22 22 2491 2730 628583287 628583528 8.800000e-28 135.0
35 TraesCS5B01G031200 chr4B 90.291 103 9 1 3428 3529 642195553 642195655 3.170000e-27 134.0
36 TraesCS5B01G031200 chr3B 86.250 320 37 3 2284 2596 754378574 754378893 1.740000e-89 340.0
37 TraesCS5B01G031200 chr7A 93.878 98 5 1 3428 3524 581374345 581374248 4.070000e-31 147.0
38 TraesCS5B01G031200 chr2B 93.750 96 5 1 3428 3523 206114821 206114727 5.260000e-30 143.0
39 TraesCS5B01G031200 chr7B 91.919 99 7 1 3427 3524 685247160 685247258 2.450000e-28 137.0
40 TraesCS5B01G031200 chr7B 88.596 114 10 3 3428 3539 539218379 539218267 8.800000e-28 135.0
41 TraesCS5B01G031200 chr6B 91.089 101 7 2 3424 3523 560191849 560191948 8.800000e-28 135.0
42 TraesCS5B01G031200 chr6A 91.089 101 7 2 3424 3523 500508987 500508888 8.800000e-28 135.0
43 TraesCS5B01G031200 chr2D 89.216 102 9 2 3423 3523 242331441 242331541 5.300000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G031200 chr5B 34248661 34253700 5039 False 9308.000000 9308 100.000000 1 5040 1 chr5B.!!$F1 5039
1 TraesCS5B01G031200 chr5B 34037649 34041978 4329 False 3025.500000 4835 93.659500 1 4303 2 chr5B.!!$F6 4302
2 TraesCS5B01G031200 chr5B 34742697 34744300 1603 False 985.000000 985 78.416000 1022 2625 1 chr5B.!!$F5 1603
3 TraesCS5B01G031200 chr5B 34765110 34768365 3255 True 972.333333 2180 83.922333 1022 4119 3 chr5B.!!$R1 3097
4 TraesCS5B01G031200 chr5B 34726548 34727133 585 False 420.000000 420 79.798000 1306 1893 1 chr5B.!!$F4 587
5 TraesCS5B01G031200 chr5A 28697112 28702444 5332 False 1041.000000 3482 91.550400 810 5040 5 chr5A.!!$F4 4230
6 TraesCS5B01G031200 chr5A 29122924 29126512 3588 True 744.666667 1208 86.449333 1022 5027 3 chr5A.!!$R2 4005
7 TraesCS5B01G031200 chr5A 29118324 29118898 574 False 411.000000 411 79.897000 1022 1593 1 chr5A.!!$F3 571
8 TraesCS5B01G031200 chr5D 40714909 40720941 6032 False 1222.600000 3446 90.523200 115 5040 5 chr5D.!!$F2 4925
9 TraesCS5B01G031200 chr5D 40915008 40916560 1552 False 1040.000000 1040 79.375000 1022 2575 1 chr5D.!!$F1 1553
10 TraesCS5B01G031200 chr5D 40919935 40923507 3572 True 821.250000 2206 83.880000 1022 5027 4 chr5D.!!$R2 4005
11 TraesCS5B01G031200 chr4B 628577596 628579155 1559 True 998.000000 998 78.905000 1022 2575 1 chr4B.!!$R1 1553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 968 1.462616 CATCCCGCAACAGAATTCCA 58.537 50.000 0.65 0.0 0.0 3.53 F
1622 1728 2.098680 CGTCTCCGTGCTCTCGAC 59.901 66.667 0.00 0.0 0.0 4.20 F
3127 3709 0.178973 TCTGGTCCCGACAAGAGTGA 60.179 55.000 0.00 0.0 36.5 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2149 2279 0.249868 TGTTCTTCCTGGACACTGCG 60.250 55.0 0.0 0.0 0.0 5.18 R
3147 3756 0.374758 GCATGTGTGTGATGGTAGCG 59.625 55.0 0.0 0.0 0.0 4.26 R
4323 5137 0.035152 TGGATCAGTCGCCATGCTTT 60.035 50.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.520748 ACAGAGGGTCAATTGGTTAGATT 57.479 39.130 5.42 0.00 0.00 2.40
32 33 5.892348 ACAGAGGGTCAATTGGTTAGATTT 58.108 37.500 5.42 0.00 0.00 2.17
33 34 5.711976 ACAGAGGGTCAATTGGTTAGATTTG 59.288 40.000 5.42 0.00 0.00 2.32
122 123 6.405842 GCTCCCCACGAGAAAAATGAAATATT 60.406 38.462 0.00 0.00 41.63 1.28
142 143 2.486472 ATGAGTTGCTCCCTCAAGTG 57.514 50.000 4.97 0.00 41.93 3.16
176 179 3.139077 CGAGTTATGGTGAATTAGGCCC 58.861 50.000 0.00 0.00 0.00 5.80
289 292 2.645875 CCCCCACCCCCAATGGATT 61.646 63.158 0.00 0.00 39.87 3.01
369 372 3.028850 CACCGACCTTCTACCAAGGATA 58.971 50.000 7.40 0.00 39.81 2.59
460 463 1.892338 GTGGCCATCACCAACATGG 59.108 57.895 9.72 0.00 42.70 3.66
543 546 8.234546 CCCATCACATTTACTACAACAAAGTAC 58.765 37.037 0.00 0.00 0.00 2.73
544 547 8.234546 CCATCACATTTACTACAACAAAGTACC 58.765 37.037 0.00 0.00 0.00 3.34
948 968 1.462616 CATCCCGCAACAGAATTCCA 58.537 50.000 0.65 0.00 0.00 3.53
975 996 2.359975 CCCCAAACCTCTGTCGCC 60.360 66.667 0.00 0.00 0.00 5.54
981 1002 4.988716 ACCTCTGTCGCCGGGTCA 62.989 66.667 2.18 0.00 0.00 4.02
1019 1040 3.435186 GGCAAACCTGAGAGCCGC 61.435 66.667 0.00 0.00 37.41 6.53
1621 1727 3.125573 CCGTCTCCGTGCTCTCGA 61.126 66.667 0.00 0.00 0.00 4.04
1622 1728 2.098680 CGTCTCCGTGCTCTCGAC 59.901 66.667 0.00 0.00 0.00 4.20
1623 1729 2.098680 GTCTCCGTGCTCTCGACG 59.901 66.667 0.00 0.00 36.56 5.12
2149 2279 4.389576 CCGCGACAAAGCAGTGCC 62.390 66.667 12.58 0.00 36.85 5.01
2549 2705 9.599866 TCAGATACCTCTATATTTGTTTGTGTG 57.400 33.333 0.00 0.00 0.00 3.82
2587 3109 8.193953 ACCAAAATCCTACTTGATCAAAACAT 57.806 30.769 9.88 0.00 0.00 2.71
2645 3178 1.269012 TTTACCCCACGGACACCTAG 58.731 55.000 0.00 0.00 0.00 3.02
2655 3188 1.535462 CGGACACCTAGGCACTTTTTG 59.465 52.381 9.30 0.00 41.75 2.44
2701 3242 3.384146 TGCTTGATCAAAACATGTGGTGT 59.616 39.130 9.88 0.00 44.84 4.16
2764 3331 3.500343 AGCCCATAATGTCCATTTAGGC 58.500 45.455 14.75 14.75 38.35 3.93
2782 3349 8.645110 CATTTAGGCATTCCTTTTGATTATCCT 58.355 33.333 0.00 0.00 40.66 3.24
2784 3351 4.897670 AGGCATTCCTTTTGATTATCCTGG 59.102 41.667 0.00 0.00 40.66 4.45
2808 3376 4.265056 GTGGCCACCACGGAACCT 62.265 66.667 26.31 0.00 44.95 3.50
2827 3396 4.215109 ACCTTGTAAACAGAGTTTGGCAT 58.785 39.130 5.45 0.00 0.00 4.40
2878 3452 2.536761 TTGAGGTAACACTTGGACCG 57.463 50.000 0.00 0.00 38.35 4.79
2895 3469 4.366684 GAGGGGTTGGGTGGCAGG 62.367 72.222 0.00 0.00 0.00 4.85
2897 3471 3.909651 GGGGTTGGGTGGCAGGAA 61.910 66.667 0.00 0.00 0.00 3.36
2902 3476 2.199652 TTGGGTGGCAGGAAAAGCG 61.200 57.895 0.00 0.00 0.00 4.68
2915 3489 1.339929 GAAAAGCGTTGTTGGTGGGAT 59.660 47.619 0.00 0.00 0.00 3.85
2930 3504 5.773091 TGGTGGGATATGTAGAGTAGTTCA 58.227 41.667 0.00 0.00 0.00 3.18
2970 3544 5.690464 AAGAGCAAATGTCCTATGAGAGT 57.310 39.130 0.00 0.00 0.00 3.24
2976 3550 5.064452 GCAAATGTCCTATGAGAGTGAAGTG 59.936 44.000 0.00 0.00 0.00 3.16
3100 3682 0.602638 GTGGTCTGCGGTGTGAATGA 60.603 55.000 0.00 0.00 0.00 2.57
3116 3698 6.428159 GTGTGAATGAATATGTATCTGGTCCC 59.572 42.308 0.00 0.00 0.00 4.46
3120 3702 4.219919 TGAATATGTATCTGGTCCCGACA 58.780 43.478 0.00 0.00 0.00 4.35
3126 3708 0.898320 ATCTGGTCCCGACAAGAGTG 59.102 55.000 7.93 0.00 44.02 3.51
3127 3709 0.178973 TCTGGTCCCGACAAGAGTGA 60.179 55.000 0.00 0.00 36.50 3.41
3128 3710 0.898320 CTGGTCCCGACAAGAGTGAT 59.102 55.000 0.00 0.00 34.21 3.06
3147 3756 5.105146 AGTGATACTCCTGTTGAAGATGACC 60.105 44.000 0.00 0.00 0.00 4.02
3148 3757 2.751166 ACTCCTGTTGAAGATGACCG 57.249 50.000 0.00 0.00 0.00 4.79
3201 3810 1.134098 CCCGGAATGTTGGCTCTGTAT 60.134 52.381 0.73 0.00 0.00 2.29
3206 3815 3.063997 GGAATGTTGGCTCTGTATGTTCG 59.936 47.826 0.00 0.00 0.00 3.95
3208 3817 1.338674 TGTTGGCTCTGTATGTTCGGG 60.339 52.381 0.00 0.00 0.00 5.14
3246 3855 2.549754 GCTGAGCTTAGCAACAAGAACA 59.450 45.455 24.41 0.00 43.17 3.18
3261 3870 1.004745 AGAACAATGGCGACCAGGATT 59.995 47.619 0.00 0.00 36.75 3.01
3322 3967 4.077745 AGGGGCTGGTATATATATGCTCCT 60.078 45.833 21.29 21.29 45.47 3.69
3366 4021 9.281371 TCTTTTTGCATCAGATAGATAAGGATG 57.719 33.333 0.00 0.00 38.64 3.51
3388 4043 8.031277 GGATGTTCATTAACTTTTCTGATGCTT 58.969 33.333 0.00 0.00 36.51 3.91
3407 4062 3.491964 GCTTATACCACACACGGCTATCA 60.492 47.826 0.00 0.00 0.00 2.15
3408 4063 2.890808 ATACCACACACGGCTATCAG 57.109 50.000 0.00 0.00 0.00 2.90
3409 4064 0.821517 TACCACACACGGCTATCAGG 59.178 55.000 0.00 0.00 0.00 3.86
3410 4065 1.153369 CCACACACGGCTATCAGGG 60.153 63.158 0.00 0.00 0.00 4.45
3411 4066 1.153369 CACACACGGCTATCAGGGG 60.153 63.158 0.00 0.00 0.00 4.79
3412 4067 2.203070 CACACGGCTATCAGGGGC 60.203 66.667 0.00 0.00 0.00 5.80
3413 4068 2.365635 ACACGGCTATCAGGGGCT 60.366 61.111 0.00 0.00 0.00 5.19
3414 4069 2.109799 CACGGCTATCAGGGGCTG 59.890 66.667 0.00 0.00 40.32 4.85
3415 4070 3.164269 ACGGCTATCAGGGGCTGG 61.164 66.667 0.00 0.00 38.96 4.85
3416 4071 3.164269 CGGCTATCAGGGGCTGGT 61.164 66.667 0.00 0.00 31.51 4.00
3417 4072 1.837051 CGGCTATCAGGGGCTGGTA 60.837 63.158 0.00 0.00 31.51 3.25
3418 4073 1.194781 CGGCTATCAGGGGCTGGTAT 61.195 60.000 0.00 0.00 31.51 2.73
3419 4074 1.895422 CGGCTATCAGGGGCTGGTATA 60.895 57.143 0.00 0.00 31.51 1.47
3420 4075 2.482494 GGCTATCAGGGGCTGGTATAT 58.518 52.381 0.00 0.00 31.51 0.86
3421 4076 3.654273 GGCTATCAGGGGCTGGTATATA 58.346 50.000 0.00 0.00 31.51 0.86
3422 4077 4.235372 GGCTATCAGGGGCTGGTATATAT 58.765 47.826 0.00 0.00 31.51 0.86
3423 4078 5.403512 GGCTATCAGGGGCTGGTATATATA 58.596 45.833 0.00 0.00 31.51 0.86
3424 4079 6.026186 GGCTATCAGGGGCTGGTATATATAT 58.974 44.000 0.00 0.00 31.51 0.86
3425 4080 6.070538 GGCTATCAGGGGCTGGTATATATATG 60.071 46.154 5.44 0.00 31.51 1.78
3442 4097 6.985653 ATATATGATACTCCCTCCATTCCG 57.014 41.667 0.00 0.00 0.00 4.30
3445 4100 4.127918 TGATACTCCCTCCATTCCGTAT 57.872 45.455 0.00 0.00 0.00 3.06
3448 4103 6.079336 TGATACTCCCTCCATTCCGTATTAA 58.921 40.000 0.00 0.00 0.00 1.40
3452 4107 5.368523 ACTCCCTCCATTCCGTATTAATTGA 59.631 40.000 0.00 0.00 0.00 2.57
3456 4111 4.443621 TCCATTCCGTATTAATTGACGCA 58.556 39.130 5.42 0.00 37.75 5.24
3457 4112 4.509970 TCCATTCCGTATTAATTGACGCAG 59.490 41.667 5.42 0.00 37.75 5.18
3458 4113 3.936902 TTCCGTATTAATTGACGCAGC 57.063 42.857 5.42 0.00 37.75 5.25
3459 4114 2.206750 TCCGTATTAATTGACGCAGCC 58.793 47.619 5.42 0.00 37.75 4.85
3460 4115 2.159014 TCCGTATTAATTGACGCAGCCT 60.159 45.455 5.42 0.00 37.75 4.58
3461 4116 2.221055 CCGTATTAATTGACGCAGCCTC 59.779 50.000 5.42 0.00 37.75 4.70
3462 4117 3.123804 CGTATTAATTGACGCAGCCTCT 58.876 45.455 0.00 0.00 31.49 3.69
3463 4118 4.295870 CGTATTAATTGACGCAGCCTCTA 58.704 43.478 0.00 0.00 31.49 2.43
3464 4119 4.923871 CGTATTAATTGACGCAGCCTCTAT 59.076 41.667 0.00 0.00 31.49 1.98
3465 4120 6.090783 CGTATTAATTGACGCAGCCTCTATA 58.909 40.000 0.00 0.00 31.49 1.31
3466 4121 6.033619 CGTATTAATTGACGCAGCCTCTATAC 59.966 42.308 0.00 0.00 31.49 1.47
3467 4122 3.819564 AATTGACGCAGCCTCTATACA 57.180 42.857 0.00 0.00 0.00 2.29
3470 4125 3.097877 TGACGCAGCCTCTATACAATG 57.902 47.619 0.00 0.00 0.00 2.82
3472 4127 3.053455 GACGCAGCCTCTATACAATGTC 58.947 50.000 0.00 0.00 0.00 3.06
3473 4128 2.224066 ACGCAGCCTCTATACAATGTCC 60.224 50.000 0.00 0.00 0.00 4.02
3474 4129 2.224042 CGCAGCCTCTATACAATGTCCA 60.224 50.000 0.00 0.00 0.00 4.02
3476 4131 4.392940 GCAGCCTCTATACAATGTCCATT 58.607 43.478 0.00 0.00 0.00 3.16
3477 4132 4.823989 GCAGCCTCTATACAATGTCCATTT 59.176 41.667 0.00 0.00 0.00 2.32
3478 4133 5.997746 GCAGCCTCTATACAATGTCCATTTA 59.002 40.000 0.00 0.00 0.00 1.40
3479 4134 6.073003 GCAGCCTCTATACAATGTCCATTTAC 60.073 42.308 0.00 0.00 0.00 2.01
3480 4135 6.992123 CAGCCTCTATACAATGTCCATTTACA 59.008 38.462 0.00 0.00 0.00 2.41
3494 4149 6.992123 TGTCCATTTACATTGTATAGAGGCTG 59.008 38.462 0.00 0.00 0.00 4.85
3495 4150 6.992715 GTCCATTTACATTGTATAGAGGCTGT 59.007 38.462 0.00 0.00 0.00 4.40
3496 4151 6.992123 TCCATTTACATTGTATAGAGGCTGTG 59.008 38.462 0.00 0.00 0.00 3.66
3497 4152 6.767902 CCATTTACATTGTATAGAGGCTGTGT 59.232 38.462 0.00 0.00 0.00 3.72
3498 4153 7.041780 CCATTTACATTGTATAGAGGCTGTGTC 60.042 40.741 0.00 0.00 0.00 3.67
3499 4154 6.538945 TTACATTGTATAGAGGCTGTGTCA 57.461 37.500 0.00 0.00 0.00 3.58
3500 4155 5.420725 ACATTGTATAGAGGCTGTGTCAA 57.579 39.130 0.00 0.00 0.00 3.18
3501 4156 5.994250 ACATTGTATAGAGGCTGTGTCAAT 58.006 37.500 0.00 0.00 0.00 2.57
3503 4158 7.564793 ACATTGTATAGAGGCTGTGTCAATTA 58.435 34.615 0.00 0.00 0.00 1.40
3504 4159 8.046708 ACATTGTATAGAGGCTGTGTCAATTAA 58.953 33.333 0.00 0.00 0.00 1.40
3510 4194 3.938963 GAGGCTGTGTCAATTAATTCGGA 59.061 43.478 0.00 0.00 0.00 4.55
3511 4195 4.526970 AGGCTGTGTCAATTAATTCGGAT 58.473 39.130 0.00 0.00 0.00 4.18
3576 4279 7.766219 AACTATACAGTTTAACATACCGCTG 57.234 36.000 0.00 0.00 42.51 5.18
3718 4521 6.682423 TGTAAATCCATGCTGTGATTACTG 57.318 37.500 0.00 0.00 0.00 2.74
3851 4654 2.808543 GAGTTTGTGAAGATGGTTCGCT 59.191 45.455 0.51 0.00 0.00 4.93
3985 4788 3.803715 GCATGTACCTTGGTAGCGATGAT 60.804 47.826 13.40 0.00 0.00 2.45
4079 4883 1.336609 GGGTGTCGTACTCACTTCACC 60.337 57.143 14.48 0.00 41.32 4.02
4121 4926 7.654520 AGTTGTAGCTAGTTTGTTTATTCACGA 59.345 33.333 0.00 0.00 0.00 4.35
4209 5014 1.398390 GGTCAATCAGTTGATGGCGAC 59.602 52.381 0.00 3.82 45.46 5.19
4210 5015 2.076100 GTCAATCAGTTGATGGCGACA 58.924 47.619 0.00 0.00 45.46 4.35
4306 5120 3.729526 CAAGGAGTCTTGCGTGTATTG 57.270 47.619 0.00 0.00 43.10 1.90
4309 5123 4.002906 AGGAGTCTTGCGTGTATTGAAA 57.997 40.909 0.00 0.00 0.00 2.69
4313 5127 2.840176 GTCTTGCGTGTATTGAAATGCG 59.160 45.455 0.00 0.00 0.00 4.73
4315 5129 2.804421 TGCGTGTATTGAAATGCGAG 57.196 45.000 0.00 0.00 0.00 5.03
4316 5130 1.202020 TGCGTGTATTGAAATGCGAGC 60.202 47.619 0.00 4.54 0.00 5.03
4319 5133 2.785679 GTGTATTGAAATGCGAGCACC 58.214 47.619 0.00 0.00 0.00 5.01
4320 5134 2.161410 GTGTATTGAAATGCGAGCACCA 59.839 45.455 0.00 0.00 0.00 4.17
4321 5135 2.419673 TGTATTGAAATGCGAGCACCAG 59.580 45.455 0.00 0.00 0.00 4.00
4323 5137 0.250684 TTGAAATGCGAGCACCAGGA 60.251 50.000 0.00 0.00 0.00 3.86
4326 6593 0.883833 AAATGCGAGCACCAGGAAAG 59.116 50.000 0.00 0.00 0.00 2.62
4348 6615 1.496060 TGGCGACTGATCCAATACCT 58.504 50.000 0.00 0.00 0.00 3.08
4369 6637 3.045601 TCAGAGTTTAGCTGCAAGACC 57.954 47.619 1.02 0.00 34.07 3.85
4371 6639 1.699634 AGAGTTTAGCTGCAAGACCCA 59.300 47.619 1.02 0.00 34.07 4.51
4372 6640 2.307098 AGAGTTTAGCTGCAAGACCCAT 59.693 45.455 1.02 0.00 34.07 4.00
4392 6660 6.330250 ACCCATATGAAAGCAATCTACTACCT 59.670 38.462 3.65 0.00 0.00 3.08
4434 6702 4.527816 TGCTGTATTTGGGAATGAAGCTTT 59.472 37.500 0.00 0.00 36.63 3.51
4436 6704 4.819769 TGTATTTGGGAATGAAGCTTTGC 58.180 39.130 0.00 0.00 0.00 3.68
4468 6736 2.042297 TGGTATTGAACATGGCCTGGAA 59.958 45.455 3.32 0.00 0.00 3.53
4469 6737 3.299503 GGTATTGAACATGGCCTGGAAT 58.700 45.455 3.32 3.53 0.00 3.01
4477 6745 2.762327 ACATGGCCTGGAATTGCTAAAG 59.238 45.455 3.32 0.00 0.00 1.85
4482 6750 3.515630 GCCTGGAATTGCTAAAGAAAGC 58.484 45.455 0.00 0.00 43.08 3.51
4501 6770 0.679505 CGTCACCTTGAGAGTGGGAA 59.320 55.000 0.00 0.00 35.87 3.97
4513 6782 1.737793 GAGTGGGAAATGGTAAGTGCG 59.262 52.381 0.00 0.00 0.00 5.34
4607 6893 9.060347 CATATACATACAATTCAAGGTTGAGCT 57.940 33.333 0.00 0.00 38.61 4.09
4656 6942 3.996363 TGGAATGAACAATCACTCAGACG 59.004 43.478 0.00 0.00 38.69 4.18
4666 6952 1.135373 TCACTCAGACGAATCTTCCGC 60.135 52.381 0.00 0.00 30.42 5.54
4702 6990 1.570813 TCATCCTTAACATGAGCGCG 58.429 50.000 0.00 0.00 0.00 6.86
4703 6991 1.134818 TCATCCTTAACATGAGCGCGT 60.135 47.619 8.43 0.00 0.00 6.01
4743 7241 6.928773 GGATTTTCCTGCCTGGCTTACAGA 62.929 50.000 21.03 6.42 40.73 3.41
4783 7282 1.990160 AAACCTGGGACAAGTGCGGA 61.990 55.000 0.00 0.00 38.70 5.54
4806 7315 4.226846 AGGGAGATTGCTCAAGAAAGATGA 59.773 41.667 0.00 0.00 43.14 2.92
4833 7342 2.044793 AATCTGGAACTCCCCTGTGA 57.955 50.000 0.00 0.00 34.29 3.58
4896 7430 2.362077 AGCGCTTGTCCTGTTTGATTTT 59.638 40.909 2.64 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.843752 TCTAACCAATTGACCCTCTGTTTAA 58.156 36.000 7.12 0.00 0.00 1.52
6 7 6.442541 TCTAACCAATTGACCCTCTGTTTA 57.557 37.500 7.12 0.00 0.00 2.01
12 13 5.163612 GCTCAAATCTAACCAATTGACCCTC 60.164 44.000 7.12 0.00 0.00 4.30
18 19 9.474920 TTTGTTTAGCTCAAATCTAACCAATTG 57.525 29.630 0.00 0.00 31.60 2.32
19 20 9.476202 GTTTGTTTAGCTCAAATCTAACCAATT 57.524 29.630 0.00 0.00 37.18 2.32
31 32 7.936496 TCATCCATATGTTTGTTTAGCTCAA 57.064 32.000 1.24 0.00 34.50 3.02
32 33 7.936496 TTCATCCATATGTTTGTTTAGCTCA 57.064 32.000 1.24 0.00 34.50 4.26
33 34 8.623903 TGATTCATCCATATGTTTGTTTAGCTC 58.376 33.333 1.24 0.00 34.50 4.09
122 123 2.355108 GCACTTGAGGGAGCAACTCATA 60.355 50.000 5.95 0.00 43.82 2.15
142 143 1.438651 TAACTCGTCCTGCATTGTGC 58.561 50.000 0.00 0.00 45.29 4.57
176 179 1.595093 GGTTGTTGATTCCGGGCCTG 61.595 60.000 3.88 3.88 0.00 4.85
189 192 1.005097 GGGGATTCCGTTAGGGTTGTT 59.995 52.381 0.00 0.00 38.33 2.83
289 292 2.021262 CCCTAGGAGCAGATGGATCA 57.979 55.000 11.48 0.00 32.12 2.92
297 300 1.452833 GCCAAAGCCCTAGGAGCAG 60.453 63.158 20.25 11.53 0.00 4.24
369 372 6.545666 TCCTTCATCATGCGTTAAACCATTAT 59.454 34.615 0.00 0.00 0.00 1.28
460 463 5.570589 GCTTGTGACAGAATCTTAAACATGC 59.429 40.000 0.00 9.47 32.51 4.06
948 968 0.859978 AGGTTTGGGGGATTGGGGAT 60.860 55.000 0.00 0.00 0.00 3.85
1089 1110 2.233431 GAGTGATGTGTCCTGCTCTCTT 59.767 50.000 0.00 0.00 0.00 2.85
1258 1279 3.515286 GTCGACGGGATCTGCCGA 61.515 66.667 17.35 5.26 37.63 5.54
1633 1739 3.458163 GTGGAGGATGTCGCCGGA 61.458 66.667 5.05 0.00 38.24 5.14
2149 2279 0.249868 TGTTCTTCCTGGACACTGCG 60.250 55.000 0.00 0.00 0.00 5.18
2549 2705 5.247862 AGGATTTTGGTTGATGGAATTTGC 58.752 37.500 0.00 0.00 0.00 3.68
2587 3109 2.037251 GTCAGTAGCAAGTTCCACCAGA 59.963 50.000 0.00 0.00 0.00 3.86
2630 3156 3.782443 GCCTAGGTGTCCGTGGGG 61.782 72.222 11.31 0.00 0.00 4.96
2645 3178 7.322664 TGATGGAATTTCTATCAAAAAGTGCC 58.677 34.615 19.52 0.00 40.65 5.01
2701 3242 1.203994 GAGGTCGGTAGCAGCAAGTTA 59.796 52.381 0.00 0.00 0.00 2.24
2764 3331 7.260603 GTTCACCAGGATAATCAAAAGGAATG 58.739 38.462 0.00 0.00 0.00 2.67
2784 3351 3.284449 GTGGTGGCCACGGTTCAC 61.284 66.667 29.08 25.10 44.95 3.18
2804 3372 4.020543 TGCCAAACTCTGTTTACAAGGTT 58.979 39.130 0.00 0.00 0.00 3.50
2808 3376 3.243704 GCCATGCCAAACTCTGTTTACAA 60.244 43.478 0.00 0.00 0.00 2.41
2827 3396 5.104982 ACTGAAACAAAAATCTTCTTGGCCA 60.105 36.000 0.00 0.00 0.00 5.36
2878 3452 4.366684 CCTGCCACCCAACCCCTC 62.367 72.222 0.00 0.00 0.00 4.30
2895 3469 0.741915 TCCCACCAACAACGCTTTTC 59.258 50.000 0.00 0.00 0.00 2.29
2897 3471 2.279935 TATCCCACCAACAACGCTTT 57.720 45.000 0.00 0.00 0.00 3.51
2902 3476 5.099042 ACTCTACATATCCCACCAACAAC 57.901 43.478 0.00 0.00 0.00 3.32
2958 3532 4.810191 AACCACTTCACTCTCATAGGAC 57.190 45.455 0.00 0.00 0.00 3.85
2960 3534 7.979444 TTTAAAACCACTTCACTCTCATAGG 57.021 36.000 0.00 0.00 0.00 2.57
2970 3544 6.707440 TGCTCATCTTTTAAAACCACTTCA 57.293 33.333 0.00 0.00 0.00 3.02
3018 3597 4.612264 AAGGAGCAAATCAGCAAATGTT 57.388 36.364 0.00 0.00 36.85 2.71
3100 3682 4.899457 TCTTGTCGGGACCAGATACATATT 59.101 41.667 0.00 0.00 29.41 1.28
3120 3702 6.438741 TCATCTTCAACAGGAGTATCACTCTT 59.561 38.462 6.30 0.00 44.46 2.85
3126 3708 4.363999 CGGTCATCTTCAACAGGAGTATC 58.636 47.826 0.00 0.00 0.00 2.24
3127 3709 3.430929 GCGGTCATCTTCAACAGGAGTAT 60.431 47.826 0.00 0.00 0.00 2.12
3128 3710 2.094182 GCGGTCATCTTCAACAGGAGTA 60.094 50.000 0.00 0.00 0.00 2.59
3147 3756 0.374758 GCATGTGTGTGATGGTAGCG 59.625 55.000 0.00 0.00 0.00 4.26
3148 3757 0.734889 GGCATGTGTGTGATGGTAGC 59.265 55.000 0.00 0.00 0.00 3.58
3201 3810 1.891150 GAAGAGTACTGGACCCGAACA 59.109 52.381 0.00 0.00 0.00 3.18
3206 3815 2.303311 AGCAAAGAAGAGTACTGGACCC 59.697 50.000 0.00 0.00 0.00 4.46
3208 3817 4.241681 CTCAGCAAAGAAGAGTACTGGAC 58.758 47.826 0.00 0.00 0.00 4.02
3246 3855 1.754234 GGCAATCCTGGTCGCCATT 60.754 57.895 15.60 0.00 44.25 3.16
3347 3998 8.789825 AATGAACATCCTTATCTATCTGATGC 57.210 34.615 0.00 0.00 37.02 3.91
3377 4032 4.629634 CGTGTGTGGTATAAGCATCAGAAA 59.370 41.667 0.00 0.00 0.00 2.52
3388 4043 2.626266 CCTGATAGCCGTGTGTGGTATA 59.374 50.000 0.00 0.00 0.00 1.47
3407 4062 7.249715 GGAGTATCATATATATACCAGCCCCT 58.750 42.308 0.00 0.00 36.25 4.79
3408 4063 6.440965 GGGAGTATCATATATATACCAGCCCC 59.559 46.154 13.33 0.17 36.25 5.80
3409 4064 7.249715 AGGGAGTATCATATATATACCAGCCC 58.750 42.308 14.91 14.91 36.92 5.19
3410 4065 7.397761 GGAGGGAGTATCATATATATACCAGCC 59.602 44.444 0.00 0.00 36.25 4.85
3411 4066 7.950684 TGGAGGGAGTATCATATATATACCAGC 59.049 40.741 0.00 0.00 36.25 4.85
3416 4071 9.755122 CGGAATGGAGGGAGTATCATATATATA 57.245 37.037 0.00 0.00 36.25 0.86
3417 4072 8.235230 ACGGAATGGAGGGAGTATCATATATAT 58.765 37.037 0.00 0.00 36.25 0.86
3418 4073 7.592736 ACGGAATGGAGGGAGTATCATATATA 58.407 38.462 0.00 0.00 36.25 0.86
3419 4074 6.444704 ACGGAATGGAGGGAGTATCATATAT 58.555 40.000 0.00 0.00 36.25 0.86
3420 4075 5.838955 ACGGAATGGAGGGAGTATCATATA 58.161 41.667 0.00 0.00 36.25 0.86
3421 4076 4.689062 ACGGAATGGAGGGAGTATCATAT 58.311 43.478 0.00 0.00 36.25 1.78
3422 4077 4.127918 ACGGAATGGAGGGAGTATCATA 57.872 45.455 0.00 0.00 36.25 2.15
3423 4078 2.977808 ACGGAATGGAGGGAGTATCAT 58.022 47.619 0.00 0.00 36.25 2.45
3424 4079 2.471815 ACGGAATGGAGGGAGTATCA 57.528 50.000 0.00 0.00 36.25 2.15
3425 4080 6.600882 TTAATACGGAATGGAGGGAGTATC 57.399 41.667 0.00 0.00 0.00 2.24
3442 4097 6.866770 TGTATAGAGGCTGCGTCAATTAATAC 59.133 38.462 22.55 18.56 0.00 1.89
3445 4100 5.270893 TGTATAGAGGCTGCGTCAATTAA 57.729 39.130 22.55 4.39 0.00 1.40
3448 4103 3.819564 TTGTATAGAGGCTGCGTCAAT 57.180 42.857 22.55 7.16 0.00 2.57
3452 4107 2.224066 GGACATTGTATAGAGGCTGCGT 60.224 50.000 0.00 0.00 0.00 5.24
3456 4111 7.136822 TGTAAATGGACATTGTATAGAGGCT 57.863 36.000 0.00 0.00 0.00 4.58
3457 4112 7.986085 ATGTAAATGGACATTGTATAGAGGC 57.014 36.000 0.00 0.00 36.64 4.70
3470 4125 6.992715 ACAGCCTCTATACAATGTAAATGGAC 59.007 38.462 0.00 0.00 0.00 4.02
3472 4127 6.767902 ACACAGCCTCTATACAATGTAAATGG 59.232 38.462 0.00 0.00 0.00 3.16
3473 4128 7.495606 TGACACAGCCTCTATACAATGTAAATG 59.504 37.037 0.00 0.00 0.00 2.32
3474 4129 7.564793 TGACACAGCCTCTATACAATGTAAAT 58.435 34.615 0.00 0.00 0.00 1.40
3476 4131 6.538945 TGACACAGCCTCTATACAATGTAA 57.461 37.500 0.00 0.00 0.00 2.41
3477 4132 6.538945 TTGACACAGCCTCTATACAATGTA 57.461 37.500 0.00 0.00 0.00 2.29
3478 4133 5.420725 TTGACACAGCCTCTATACAATGT 57.579 39.130 0.00 0.00 0.00 2.71
3479 4134 6.932356 AATTGACACAGCCTCTATACAATG 57.068 37.500 0.00 0.00 0.00 2.82
3480 4135 9.632638 AATTAATTGACACAGCCTCTATACAAT 57.367 29.630 0.00 0.00 0.00 2.71
3482 4137 7.438160 CGAATTAATTGACACAGCCTCTATACA 59.562 37.037 5.17 0.00 0.00 2.29
3483 4138 7.095607 CCGAATTAATTGACACAGCCTCTATAC 60.096 40.741 5.17 0.00 0.00 1.47
3484 4139 6.929049 CCGAATTAATTGACACAGCCTCTATA 59.071 38.462 5.17 0.00 0.00 1.31
3485 4140 5.760253 CCGAATTAATTGACACAGCCTCTAT 59.240 40.000 5.17 0.00 0.00 1.98
3487 4142 3.941483 CCGAATTAATTGACACAGCCTCT 59.059 43.478 5.17 0.00 0.00 3.69
3489 4144 3.950397 TCCGAATTAATTGACACAGCCT 58.050 40.909 5.17 0.00 0.00 4.58
3490 4145 4.552767 CGATCCGAATTAATTGACACAGCC 60.553 45.833 5.17 0.00 0.00 4.85
3494 4149 4.211374 CCTCCGATCCGAATTAATTGACAC 59.789 45.833 5.17 0.00 0.00 3.67
3495 4150 4.377021 CCTCCGATCCGAATTAATTGACA 58.623 43.478 5.17 0.00 0.00 3.58
3496 4151 3.746492 CCCTCCGATCCGAATTAATTGAC 59.254 47.826 5.17 0.00 0.00 3.18
3497 4152 3.644265 TCCCTCCGATCCGAATTAATTGA 59.356 43.478 5.17 0.00 0.00 2.57
3498 4153 3.997021 CTCCCTCCGATCCGAATTAATTG 59.003 47.826 5.17 0.00 0.00 2.32
3499 4154 3.646637 ACTCCCTCCGATCCGAATTAATT 59.353 43.478 0.00 0.00 0.00 1.40
3500 4155 3.240302 ACTCCCTCCGATCCGAATTAAT 58.760 45.455 0.00 0.00 0.00 1.40
3501 4156 2.674420 ACTCCCTCCGATCCGAATTAA 58.326 47.619 0.00 0.00 0.00 1.40
3503 4158 2.376695 TACTCCCTCCGATCCGAATT 57.623 50.000 0.00 0.00 0.00 2.17
3504 4159 2.376695 TTACTCCCTCCGATCCGAAT 57.623 50.000 0.00 0.00 0.00 3.34
3567 4270 2.345876 TGATTGTGTGTCAGCGGTATG 58.654 47.619 0.00 0.00 0.00 2.39
3568 4271 2.621338 CTGATTGTGTGTCAGCGGTAT 58.379 47.619 0.00 0.00 36.95 2.73
3569 4272 2.078849 CTGATTGTGTGTCAGCGGTA 57.921 50.000 0.00 0.00 36.95 4.02
3570 4273 2.918571 CTGATTGTGTGTCAGCGGT 58.081 52.632 0.00 0.00 36.95 5.68
3574 4277 1.802960 GGTGAGCTGATTGTGTGTCAG 59.197 52.381 0.00 0.00 44.60 3.51
3575 4278 1.140652 TGGTGAGCTGATTGTGTGTCA 59.859 47.619 0.00 0.00 0.00 3.58
3576 4279 1.802960 CTGGTGAGCTGATTGTGTGTC 59.197 52.381 0.00 0.00 0.00 3.67
3718 4521 2.094258 CACACGTATGCAGACCACAATC 59.906 50.000 5.78 0.00 0.00 2.67
3851 4654 7.270365 GTCAACATTTTCGAATAAATCTTCGCA 59.730 33.333 0.00 0.00 45.80 5.10
3874 4677 5.388599 TGTCATACTCCTCTGGATAGTCA 57.611 43.478 0.00 0.00 0.00 3.41
3985 4788 3.343617 GTCGGATTCCTTGATGGTGAAA 58.656 45.455 0.30 0.00 37.07 2.69
4052 4855 0.896940 GAGTACGACACCCCTCACCA 60.897 60.000 0.00 0.00 0.00 4.17
4079 4883 7.085116 AGCTACAACTTAATCGAGGATAATCG 58.915 38.462 0.00 0.00 44.07 3.34
4121 4926 5.046376 CCCAAAATAAAAGGAAGGAGCACAT 60.046 40.000 0.00 0.00 0.00 3.21
4209 5014 1.188791 CAAGCGACGTCATCATCGATG 59.811 52.381 19.61 19.61 40.86 3.84
4210 5015 1.481240 CAAGCGACGTCATCATCGAT 58.519 50.000 17.16 0.00 40.86 3.59
4211 5016 1.139816 GCAAGCGACGTCATCATCGA 61.140 55.000 17.16 0.00 40.86 3.59
4212 5017 1.142185 AGCAAGCGACGTCATCATCG 61.142 55.000 17.16 1.57 41.32 3.84
4213 5018 0.299895 CAGCAAGCGACGTCATCATC 59.700 55.000 17.16 1.18 0.00 2.92
4214 5019 1.086067 CCAGCAAGCGACGTCATCAT 61.086 55.000 17.16 0.00 0.00 2.45
4217 5028 0.037697 TTACCAGCAAGCGACGTCAT 60.038 50.000 17.16 0.00 0.00 3.06
4304 5118 0.250684 TCCTGGTGCTCGCATTTCAA 60.251 50.000 0.00 0.00 0.00 2.69
4305 5119 0.250684 TTCCTGGTGCTCGCATTTCA 60.251 50.000 0.00 0.00 0.00 2.69
4306 5120 0.881118 TTTCCTGGTGCTCGCATTTC 59.119 50.000 0.00 0.00 0.00 2.17
4309 5123 2.042831 GCTTTCCTGGTGCTCGCAT 61.043 57.895 0.00 0.00 0.00 4.73
4313 5127 1.941999 GCCATGCTTTCCTGGTGCTC 61.942 60.000 0.00 0.00 34.86 4.26
4315 5129 2.575461 GCCATGCTTTCCTGGTGC 59.425 61.111 0.00 0.00 34.86 5.01
4316 5130 1.675310 TCGCCATGCTTTCCTGGTG 60.675 57.895 0.00 0.00 43.04 4.17
4319 5133 0.674581 TCAGTCGCCATGCTTTCCTG 60.675 55.000 0.00 0.00 0.00 3.86
4320 5134 0.254178 ATCAGTCGCCATGCTTTCCT 59.746 50.000 0.00 0.00 0.00 3.36
4321 5135 0.659957 GATCAGTCGCCATGCTTTCC 59.340 55.000 0.00 0.00 0.00 3.13
4323 5137 0.035152 TGGATCAGTCGCCATGCTTT 60.035 50.000 0.00 0.00 0.00 3.51
4326 6593 1.532868 GTATTGGATCAGTCGCCATGC 59.467 52.381 0.00 0.00 33.46 4.06
4331 6598 3.126831 CTGAAGGTATTGGATCAGTCGC 58.873 50.000 0.00 0.00 35.65 5.19
4348 6615 3.403038 GGTCTTGCAGCTAAACTCTGAA 58.597 45.455 0.00 0.00 33.54 3.02
4369 6637 7.445121 TCAGGTAGTAGATTGCTTTCATATGG 58.555 38.462 2.13 0.00 0.00 2.74
4371 6639 8.484214 TCTCAGGTAGTAGATTGCTTTCATAT 57.516 34.615 0.00 0.00 0.00 1.78
4372 6640 7.014711 CCTCTCAGGTAGTAGATTGCTTTCATA 59.985 40.741 0.00 0.00 0.00 2.15
4414 6682 4.322650 GGCAAAGCTTCATTCCCAAATACA 60.323 41.667 0.00 0.00 0.00 2.29
4420 6688 1.259609 CAGGCAAAGCTTCATTCCCA 58.740 50.000 0.00 0.00 0.00 4.37
4422 6690 1.615392 ACACAGGCAAAGCTTCATTCC 59.385 47.619 0.00 0.00 0.00 3.01
4436 6704 2.127271 TCAATACCATGCCACACAGG 57.873 50.000 0.00 0.00 41.84 4.00
4468 6736 3.412386 AGGTGACGCTTTCTTTAGCAAT 58.588 40.909 0.00 0.00 41.28 3.56
4469 6737 2.846193 AGGTGACGCTTTCTTTAGCAA 58.154 42.857 0.00 0.00 41.28 3.91
4477 6745 1.795286 CACTCTCAAGGTGACGCTTTC 59.205 52.381 0.00 0.00 36.89 2.62
4482 6750 0.679505 TTCCCACTCTCAAGGTGACG 59.320 55.000 0.00 0.00 36.89 4.35
4501 6770 0.676782 GCCCTGACGCACTTACCATT 60.677 55.000 0.00 0.00 0.00 3.16
4607 6893 8.361139 GGAATTACTAACTCTGATGCTAAGCTA 58.639 37.037 0.00 0.00 0.00 3.32
4656 6942 0.886490 ATCATGCGGGCGGAAGATTC 60.886 55.000 0.00 0.00 0.00 2.52
4702 6990 7.984422 AAAATCCCCTTTTCAATCATCAAAC 57.016 32.000 0.00 0.00 31.23 2.93
4783 7282 4.226846 TCATCTTTCTTGAGCAATCTCCCT 59.773 41.667 0.00 0.00 38.58 4.20
4806 7315 2.774809 GGGAGTTCCAGATTAGCTTCCT 59.225 50.000 0.00 0.00 37.91 3.36
4833 7342 8.587608 TCAAGCAAAAATTCTCACCTTATTCAT 58.412 29.630 0.00 0.00 0.00 2.57
4921 7455 4.504097 ACATTTCGTTTCTCAAAGCTTTGC 59.496 37.500 30.35 16.86 38.05 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.