Multiple sequence alignment - TraesCS5B01G030800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G030800 chr5B 100.000 5067 0 0 1 5067 34037649 34042715 0.000000e+00 9358.0
1 TraesCS5B01G030800 chr5B 92.447 3469 132 46 1 3404 34248661 34252064 0.000000e+00 4835.0
2 TraesCS5B01G030800 chr5B 89.005 1728 144 30 1026 2720 34768358 34766644 0.000000e+00 2097.0
3 TraesCS5B01G030800 chr5B 94.872 780 37 3 3554 4330 34252184 34252963 0.000000e+00 1216.0
4 TraesCS5B01G030800 chr5B 77.447 1614 266 56 1024 2578 34742702 34744276 0.000000e+00 874.0
5 TraesCS5B01G030800 chr5B 87.221 493 57 3 3655 4146 34765597 34765110 1.590000e-154 556.0
6 TraesCS5B01G030800 chr5B 78.401 588 101 14 1303 1866 34726548 34727133 4.820000e-95 359.0
7 TraesCS5B01G030800 chr5B 84.496 258 25 6 3158 3400 34765984 34765727 1.820000e-59 241.0
8 TraesCS5B01G030800 chr5B 86.957 138 8 8 3406 3538 34041186 34041054 4.090000e-31 147.0
9 TraesCS5B01G030800 chr5B 96.364 55 1 1 944 998 34768570 34768517 6.990000e-14 89.8
10 TraesCS5B01G030800 chr5B 96.154 52 2 0 3465 3516 34041164 34041113 9.040000e-13 86.1
11 TraesCS5B01G030800 chr5B 89.362 47 4 1 3489 3535 581145837 581145882 1.970000e-04 58.4
12 TraesCS5B01G030800 chr5D 92.286 2774 132 35 691 3411 40715438 40718182 0.000000e+00 3862.0
13 TraesCS5B01G030800 chr5D 88.953 1729 148 26 1024 2716 40923502 40921781 0.000000e+00 2095.0
14 TraesCS5B01G030800 chr5D 91.561 1185 74 15 3533 4709 40718183 40719349 0.000000e+00 1611.0
15 TraesCS5B01G030800 chr5D 82.872 940 108 20 3655 4580 40921214 40920314 0.000000e+00 795.0
16 TraesCS5B01G030800 chr5D 80.968 888 130 21 1680 2548 40915693 40916560 0.000000e+00 667.0
17 TraesCS5B01G030800 chr5D 83.662 557 71 17 112 659 40714909 40715454 1.630000e-139 507.0
18 TraesCS5B01G030800 chr5D 79.029 577 102 15 1024 1589 40915013 40915581 1.330000e-100 377.0
19 TraesCS5B01G030800 chr5D 83.969 262 23 9 3158 3400 40921604 40921343 3.050000e-57 233.0
20 TraesCS5B01G030800 chr5D 86.111 180 20 5 4706 4883 40719467 40719643 6.700000e-44 189.0
21 TraesCS5B01G030800 chr5D 84.302 172 22 2 4313 4483 40784060 40783893 4.060000e-36 163.0
22 TraesCS5B01G030800 chr5D 96.364 55 1 1 944 998 40924037 40923984 6.990000e-14 89.8
23 TraesCS5B01G030800 chr5D 100.000 31 0 0 5035 5065 50964893 50964863 1.970000e-04 58.4
24 TraesCS5B01G030800 chr5A 92.840 2570 112 23 807 3322 28697112 28699663 0.000000e+00 3661.0
25 TraesCS5B01G030800 chr5A 87.274 1163 119 21 1722 2864 29125915 29124762 0.000000e+00 1301.0
26 TraesCS5B01G030800 chr5A 92.741 675 40 3 3607 4281 28699893 28700558 0.000000e+00 966.0
27 TraesCS5B01G030800 chr5A 91.540 591 39 8 1026 1615 29126505 29125925 0.000000e+00 804.0
28 TraesCS5B01G030800 chr5A 80.906 817 119 18 1749 2548 29119037 29119833 1.210000e-170 610.0
29 TraesCS5B01G030800 chr5A 92.857 322 17 6 4701 5020 28701302 28701619 3.570000e-126 462.0
30 TraesCS5B01G030800 chr5A 85.372 417 53 7 3655 4068 29124234 29123823 4.690000e-115 425.0
31 TraesCS5B01G030800 chr5A 78.510 577 107 14 1024 1590 29118329 29118898 3.730000e-96 363.0
32 TraesCS5B01G030800 chr5A 83.390 295 25 13 1156 1448 28113707 28113435 8.420000e-63 252.0
33 TraesCS5B01G030800 chr5A 83.206 262 25 9 3158 3400 29124607 29124346 6.600000e-54 222.0
34 TraesCS5B01G030800 chr5A 92.233 103 6 1 3323 3423 28699712 28699814 1.470000e-30 145.0
35 TraesCS5B01G030800 chr5A 88.095 126 9 5 874 998 29126802 29126682 1.470000e-30 145.0
36 TraesCS5B01G030800 chr5A 90.566 106 10 0 4604 4709 28701165 28701270 1.900000e-29 141.0
37 TraesCS5B01G030800 chr5A 86.441 118 16 0 3894 4011 28700567 28700684 4.120000e-26 130.0
38 TraesCS5B01G030800 chr5A 100.000 31 0 0 5035 5065 496604432 496604402 1.970000e-04 58.4
39 TraesCS5B01G030800 chr4B 77.645 586 103 20 1024 1589 628579150 628578573 1.050000e-86 331.0
40 TraesCS5B01G030800 chr3B 85.000 320 41 3 2257 2569 754378574 754378893 8.190000e-83 318.0
41 TraesCS5B01G030800 chr3B 82.836 268 27 9 3152 3400 754379845 754380112 6.600000e-54 222.0
42 TraesCS5B01G030800 chr3B 100.000 32 0 0 5034 5065 49570791 49570822 5.480000e-05 60.2
43 TraesCS5B01G030800 chr3B 100.000 31 0 0 5037 5067 20064636 20064606 1.970000e-04 58.4
44 TraesCS5B01G030800 chr7D 86.957 69 4 2 3408 3476 37659003 37659066 7.040000e-09 73.1
45 TraesCS5B01G030800 chr3D 97.500 40 1 0 3410 3449 40869732 40869693 9.100000e-08 69.4
46 TraesCS5B01G030800 chr4D 91.667 48 0 2 3419 3466 478049743 478049700 4.240000e-06 63.9
47 TraesCS5B01G030800 chr4D 94.872 39 2 0 3410 3448 153902373 153902411 1.520000e-05 62.1
48 TraesCS5B01G030800 chr4D 100.000 30 0 0 5036 5065 405469258 405469229 7.090000e-04 56.5
49 TraesCS5B01G030800 chr4D 100.000 28 0 0 3409 3436 1407258 1407285 9.000000e-03 52.8
50 TraesCS5B01G030800 chr7B 100.000 30 0 0 5036 5065 112349838 112349809 7.090000e-04 56.5
51 TraesCS5B01G030800 chr2A 96.970 33 1 0 5035 5067 10634118 10634086 7.090000e-04 56.5
52 TraesCS5B01G030800 chr1D 97.059 34 0 1 3402 3434 44647413 44647380 7.090000e-04 56.5
53 TraesCS5B01G030800 chr1B 97.059 34 0 1 3402 3434 63964800 63964767 7.090000e-04 56.5
54 TraesCS5B01G030800 chr6A 100.000 29 0 0 5039 5067 302775387 302775359 3.000000e-03 54.7
55 TraesCS5B01G030800 chr1A 100.000 29 0 0 5037 5065 309792310 309792282 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G030800 chr5B 34037649 34042715 5066 False 9358.00 9358 100.000000 1 5067 1 chr5B.!!$F1 5066
1 TraesCS5B01G030800 chr5B 34248661 34252963 4302 False 3025.50 4835 93.659500 1 4330 2 chr5B.!!$F5 4329
2 TraesCS5B01G030800 chr5B 34742702 34744276 1574 False 874.00 874 77.447000 1024 2578 1 chr5B.!!$F3 1554
3 TraesCS5B01G030800 chr5B 34765110 34768570 3460 True 745.95 2097 89.271500 944 4146 4 chr5B.!!$R2 3202
4 TraesCS5B01G030800 chr5B 34726548 34727133 585 False 359.00 359 78.401000 1303 1866 1 chr5B.!!$F2 563
5 TraesCS5B01G030800 chr5D 40714909 40719643 4734 False 1542.25 3862 88.405000 112 4883 4 chr5D.!!$F1 4771
6 TraesCS5B01G030800 chr5D 40920314 40924037 3723 True 803.20 2095 88.039500 944 4580 4 chr5D.!!$R3 3636
7 TraesCS5B01G030800 chr5D 40915013 40916560 1547 False 522.00 667 79.998500 1024 2548 2 chr5D.!!$F2 1524
8 TraesCS5B01G030800 chr5A 28697112 28701619 4507 False 917.50 3661 91.279667 807 5020 6 chr5A.!!$F1 4213
9 TraesCS5B01G030800 chr5A 29123823 29126802 2979 True 579.40 1301 87.097400 874 4068 5 chr5A.!!$R3 3194
10 TraesCS5B01G030800 chr5A 29118329 29119833 1504 False 486.50 610 79.708000 1024 2548 2 chr5A.!!$F2 1524
11 TraesCS5B01G030800 chr4B 628578573 628579150 577 True 331.00 331 77.645000 1024 1589 1 chr4B.!!$R1 565
12 TraesCS5B01G030800 chr3B 754378574 754380112 1538 False 270.00 318 83.918000 2257 3400 2 chr3B.!!$F2 1143

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 1003 0.672401 TCCCGCAACAGAATTCCGTC 60.672 55.0 0.65 0.0 0.0 4.79 F
2619 3658 0.114954 TACCCCACGGACACCTAAGT 59.885 55.0 0.00 0.0 0.0 2.24 F
2701 4259 0.033503 TCTGCTACCGACCTCCATCA 60.034 55.0 0.00 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2682 4240 0.033503 TGATGGAGGTCGGTAGCAGA 60.034 55.000 0.00 0.00 0.00 4.26 R
3823 5593 0.400670 GGAATCCCTCCCCACTAGCT 60.401 60.000 0.00 0.00 38.44 3.32 R
4500 6281 2.282745 AGAGGCAGCAAGTTGGGC 60.283 61.111 4.75 1.18 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
188 194 2.584391 GCCTAGGCCCGGAATCGAT 61.584 63.158 24.19 0.00 35.03 3.59
197 203 2.027469 GCCCGGAATCGATAACCCTAAT 60.027 50.000 0.73 0.00 39.00 1.73
199 205 3.259876 CCCGGAATCGATAACCCTAATGA 59.740 47.826 0.73 0.00 39.00 2.57
344 350 2.511600 CCTCAACGCTAAGGCCGG 60.512 66.667 0.00 0.00 34.44 6.13
500 506 5.122396 ACAAGCCTATCTAACTCAAAAAGCG 59.878 40.000 0.00 0.00 0.00 4.68
949 1003 0.672401 TCCCGCAACAGAATTCCGTC 60.672 55.000 0.65 0.00 0.00 4.79
1110 1632 1.277557 GAGCAGGACACATCACTCCTT 59.722 52.381 0.00 0.00 34.40 3.36
1140 1662 4.838486 GAGCTCCACCGCGACGAG 62.838 72.222 8.23 10.26 34.40 4.18
1593 2170 2.037367 TCCTCCCTCGACACCCTG 59.963 66.667 0.00 0.00 0.00 4.45
1654 2264 1.288127 CAAACTCTGGCCAAGCAGC 59.712 57.895 7.01 0.00 0.00 5.25
1655 2265 1.152694 AAACTCTGGCCAAGCAGCA 60.153 52.632 7.01 0.00 0.00 4.41
2135 2775 1.303074 ACTGCAGCAGTGTCCATGG 60.303 57.895 27.73 4.97 43.63 3.66
2180 2823 4.972733 AACTGCGGCATGGCACCA 62.973 61.111 20.37 13.99 38.17 4.17
2335 2993 0.893270 TTTCCGTTCCACTGGCATGG 60.893 55.000 0.00 0.00 41.57 3.66
2440 3098 6.825721 GGCTCATAAAAGAATCTCCAGAAAGA 59.174 38.462 0.00 0.00 0.00 2.52
2444 3102 9.610705 TCATAAAAGAATCTCCAGAAAGATCAG 57.389 33.333 0.00 0.00 34.90 2.90
2477 3135 4.789807 AGCAGATATGAGGTGCAGAATTT 58.210 39.130 0.00 0.00 39.80 1.82
2500 3158 4.469945 TGGTGAGTTAGTTTATCCCTCAGG 59.530 45.833 0.00 0.00 33.16 3.86
2504 3165 6.154021 GTGAGTTAGTTTATCCCTCAGGTACA 59.846 42.308 0.00 0.00 33.16 2.90
2596 3627 7.432148 TGCTACTGACCTCCTTTGATTAATA 57.568 36.000 0.00 0.00 0.00 0.98
2598 3629 8.494433 TGCTACTGACCTCCTTTGATTAATAAT 58.506 33.333 0.00 0.00 0.00 1.28
2619 3658 0.114954 TACCCCACGGACACCTAAGT 59.885 55.000 0.00 0.00 0.00 2.24
2664 4218 3.201708 AGTTAGAAGGCCTGCTTGATCAT 59.798 43.478 21.57 0.00 0.00 2.45
2682 4240 6.009589 TGATCATAACATGTGGTGGAACTTT 58.990 36.000 0.00 0.00 36.74 2.66
2701 4259 0.033503 TCTGCTACCGACCTCCATCA 60.034 55.000 0.00 0.00 0.00 3.07
2899 4464 0.251608 AATGGGTTGGGTGGCAGTAC 60.252 55.000 0.00 0.00 0.00 2.73
2944 4509 8.272545 TGTAGAGTAGTTCGCAAATAAGTAGA 57.727 34.615 0.00 0.00 0.00 2.59
3028 4615 6.195613 CACATTTGCTGATTTGCTTGTTTTTG 59.804 34.615 0.00 0.00 0.00 2.44
3242 4829 3.748568 CAGTTCCAGTACTCTTCTTTGCC 59.251 47.826 0.00 0.00 0.00 4.52
3275 4865 2.125773 AGAACGACGACCAGGATAGT 57.874 50.000 0.00 0.00 0.00 2.12
3330 4968 0.323957 AGGGGCTGGTACGTTCTTTC 59.676 55.000 0.00 0.00 0.00 2.62
3392 5040 8.791327 TTCATTAACTGTTCTGATGCTCATAA 57.209 30.769 0.00 0.00 0.00 1.90
3419 5085 1.187087 GGCTCCATATACTCCCTCCG 58.813 60.000 0.00 0.00 0.00 4.63
3425 5091 2.605257 CATATACTCCCTCCGTCCCAA 58.395 52.381 0.00 0.00 0.00 4.12
3428 5094 1.732117 TACTCCCTCCGTCCCAAAAA 58.268 50.000 0.00 0.00 0.00 1.94
3429 5095 0.400594 ACTCCCTCCGTCCCAAAAAG 59.599 55.000 0.00 0.00 0.00 2.27
3430 5096 0.960861 CTCCCTCCGTCCCAAAAAGC 60.961 60.000 0.00 0.00 0.00 3.51
3434 5100 1.318576 CTCCGTCCCAAAAAGCTTGT 58.681 50.000 0.00 0.00 0.00 3.16
3448 5114 2.184385 GCTTGTCGCTCAAATGGATG 57.816 50.000 0.00 0.00 35.48 3.51
3449 5115 1.202222 GCTTGTCGCTCAAATGGATGG 60.202 52.381 0.00 0.00 35.48 3.51
3452 5118 3.836365 TGTCGCTCAAATGGATGGATA 57.164 42.857 0.00 0.00 0.00 2.59
3454 5120 5.482163 TGTCGCTCAAATGGATGGATATA 57.518 39.130 0.00 0.00 0.00 0.86
3455 5121 6.053632 TGTCGCTCAAATGGATGGATATAT 57.946 37.500 0.00 0.00 0.00 0.86
3456 5122 6.108687 TGTCGCTCAAATGGATGGATATATC 58.891 40.000 3.96 3.96 0.00 1.63
3458 5124 7.124147 TGTCGCTCAAATGGATGGATATATCTA 59.876 37.037 12.42 6.97 0.00 1.98
3459 5125 7.651304 GTCGCTCAAATGGATGGATATATCTAG 59.349 40.741 12.42 0.00 0.00 2.43
3460 5126 6.423302 CGCTCAAATGGATGGATATATCTAGC 59.577 42.308 12.42 9.13 0.00 3.42
3461 5127 7.278135 GCTCAAATGGATGGATATATCTAGCA 58.722 38.462 15.15 4.90 0.00 3.49
3462 5128 7.226325 GCTCAAATGGATGGATATATCTAGCAC 59.774 40.741 15.15 6.34 0.00 4.40
3464 5130 9.492730 TCAAATGGATGGATATATCTAGCACTA 57.507 33.333 15.15 2.93 0.00 2.74
3467 5133 9.499369 AATGGATGGATATATCTAGCACTAAGT 57.501 33.333 15.15 0.00 0.00 2.24
3469 5135 9.326489 TGGATGGATATATCTAGCACTAAGTTT 57.674 33.333 15.15 0.00 0.00 2.66
3476 5142 3.834610 TCTAGCACTAAGTTTGTCGCTC 58.165 45.455 14.03 0.00 0.00 5.03
3477 5143 2.526304 AGCACTAAGTTTGTCGCTCA 57.474 45.000 7.97 0.00 0.00 4.26
3478 5144 2.833794 AGCACTAAGTTTGTCGCTCAA 58.166 42.857 7.97 0.00 0.00 3.02
3479 5145 3.202906 AGCACTAAGTTTGTCGCTCAAA 58.797 40.909 7.97 2.42 42.79 2.69
3480 5146 3.815401 AGCACTAAGTTTGTCGCTCAAAT 59.185 39.130 8.36 0.00 45.88 2.32
3481 5147 3.908382 GCACTAAGTTTGTCGCTCAAATG 59.092 43.478 8.36 4.78 45.88 2.32
3482 5148 4.466828 CACTAAGTTTGTCGCTCAAATGG 58.533 43.478 8.36 0.84 45.88 3.16
3483 5149 4.213270 CACTAAGTTTGTCGCTCAAATGGA 59.787 41.667 8.36 0.00 45.88 3.41
3485 5151 3.837213 AGTTTGTCGCTCAAATGGATG 57.163 42.857 8.36 0.00 45.88 3.51
3486 5152 2.489329 AGTTTGTCGCTCAAATGGATGG 59.511 45.455 8.36 0.00 45.88 3.51
3487 5153 2.487762 GTTTGTCGCTCAAATGGATGGA 59.512 45.455 8.36 0.00 45.88 3.41
3488 5154 2.715749 TGTCGCTCAAATGGATGGAT 57.284 45.000 0.00 0.00 0.00 3.41
3489 5155 3.836365 TGTCGCTCAAATGGATGGATA 57.164 42.857 0.00 0.00 0.00 2.59
3490 5156 4.356405 TGTCGCTCAAATGGATGGATAT 57.644 40.909 0.00 0.00 0.00 1.63
3491 5157 5.482163 TGTCGCTCAAATGGATGGATATA 57.518 39.130 0.00 0.00 0.00 0.86
3492 5158 6.053632 TGTCGCTCAAATGGATGGATATAT 57.946 37.500 0.00 0.00 0.00 0.86
3493 5159 6.108687 TGTCGCTCAAATGGATGGATATATC 58.891 40.000 3.96 3.96 0.00 1.63
3494 5160 8.277329 TTGTCGCTCAAATGGATGGATATATCC 61.277 40.741 22.92 22.92 38.99 2.59
3544 5210 7.011382 GGGACGGAGGGAGTATATGATAATAT 58.989 42.308 0.00 0.00 0.00 1.28
3545 5211 7.509659 GGGACGGAGGGAGTATATGATAATATT 59.490 40.741 0.00 0.00 0.00 1.28
3546 5212 8.925338 GGACGGAGGGAGTATATGATAATATTT 58.075 37.037 0.00 0.00 0.00 1.40
3585 5251 2.135933 GACTCACAGTCCTTGGAAACG 58.864 52.381 0.00 0.00 39.28 3.60
3586 5252 1.202651 ACTCACAGTCCTTGGAAACGG 60.203 52.381 0.00 0.00 0.00 4.44
3596 5262 4.212004 GTCCTTGGAAACGGTACAGTTTAC 59.788 45.833 22.52 22.52 43.54 2.01
3597 5263 3.184986 CCTTGGAAACGGTACAGTTTACG 59.815 47.826 23.29 13.21 45.44 3.18
3600 5266 4.295051 TGGAAACGGTACAGTTTACGTAC 58.705 43.478 23.29 12.15 45.44 3.67
3695 5464 4.810191 GGTTAAATACCAATGTTGCCCA 57.190 40.909 0.00 0.00 46.92 5.36
3764 5534 4.575885 ACTAATTGTGGTCTGCATACGTT 58.424 39.130 0.00 0.00 0.00 3.99
3823 5593 1.843851 GGGATCAGGATTGTACACCCA 59.156 52.381 14.05 0.00 36.47 4.51
4343 6124 0.239347 GTGTGTTGCTGATGCCTGAC 59.761 55.000 0.00 0.00 38.71 3.51
4395 6176 1.555075 GCTGTGGTCCATTGGTCTCTA 59.445 52.381 1.86 0.00 0.00 2.43
4398 6179 4.040952 GCTGTGGTCCATTGGTCTCTATAT 59.959 45.833 1.86 0.00 0.00 0.86
4455 6236 0.598065 GCAGGTGGTAGCAGGTTTTG 59.402 55.000 0.00 0.00 0.00 2.44
4485 6266 0.105593 AGTGCTTCGATGCCGATCAT 59.894 50.000 19.40 0.00 45.10 2.45
4500 6281 3.295553 GATCATTCAGAGCGTGTTTCG 57.704 47.619 0.00 0.00 43.12 3.46
4587 6374 4.688874 CGATTATTGGAAAGGGGTTAGCCT 60.689 45.833 0.00 0.00 34.45 4.58
4624 6686 7.856145 AAACTAGCTTGTTTCATAGGATGAG 57.144 36.000 18.72 0.00 40.94 2.90
4630 6692 5.586243 GCTTGTTTCATAGGATGAGCAAGTA 59.414 40.000 22.42 0.00 45.35 2.24
4674 6736 9.125026 GATATACAGGTTGACATCAAAAGGATT 57.875 33.333 0.00 0.00 37.63 3.01
4689 6751 5.453567 AAAGGATTTTGCTAAGTCACACC 57.546 39.130 5.83 0.00 31.62 4.16
4704 6766 3.502211 GTCACACCTAGTGGTTTTGATGG 59.498 47.826 0.00 0.00 46.05 3.51
4709 6771 3.826729 ACCTAGTGGTTTTGATGGAAAGC 59.173 43.478 0.00 0.00 46.05 3.51
4751 6935 9.914131 ATTAAAGACCTGTTTGCTAAAAGATTC 57.086 29.630 0.00 0.00 0.00 2.52
4784 6968 9.713684 TGGAATGAAAAATATCTTTCTATGGGT 57.286 29.630 3.30 0.00 36.46 4.51
4786 6970 9.971922 GAATGAAAAATATCTTTCTATGGGTGG 57.028 33.333 3.30 0.00 36.46 4.61
4796 6980 5.131142 TCTTTCTATGGGTGGAAAGGAGATC 59.869 44.000 12.34 0.00 46.80 2.75
4814 6998 5.760743 GGAGATCCTTGTTAAATCTGTAGCC 59.239 44.000 0.00 0.00 30.04 3.93
4816 7000 6.352516 AGATCCTTGTTAAATCTGTAGCCTG 58.647 40.000 0.00 0.00 0.00 4.85
4818 7002 3.378427 CCTTGTTAAATCTGTAGCCTGGC 59.622 47.826 11.65 11.65 0.00 4.85
4819 7003 4.265073 CTTGTTAAATCTGTAGCCTGGCT 58.735 43.478 26.52 26.52 43.41 4.75
4820 7004 3.609853 TGTTAAATCTGTAGCCTGGCTG 58.390 45.455 30.83 14.67 40.10 4.85
4822 7006 4.224147 TGTTAAATCTGTAGCCTGGCTGTA 59.776 41.667 30.83 17.65 40.10 2.74
4825 7009 5.832539 AAATCTGTAGCCTGGCTGTATAT 57.167 39.130 30.83 15.63 40.10 0.86
4832 7016 4.510167 AGCCTGGCTGTATATGAACTTT 57.490 40.909 22.71 0.00 37.57 2.66
4852 7036 9.214957 GAACTTTTGTAATGGGGATTTTTAAGG 57.785 33.333 0.00 0.00 0.00 2.69
4855 7039 7.857404 TTTGTAATGGGGATTTTTAAGGTGA 57.143 32.000 0.00 0.00 0.00 4.02
4926 7110 0.689080 GGAGAGGATGAGGGTCAGCA 60.689 60.000 0.00 0.00 33.81 4.41
4935 7119 1.064758 TGAGGGTCAGCAAAGTGTTGT 60.065 47.619 0.00 0.00 37.06 3.32
5020 7204 5.087323 AGACACCACTCTCTTTAATCAGGA 58.913 41.667 0.00 0.00 0.00 3.86
5021 7205 5.723887 AGACACCACTCTCTTTAATCAGGAT 59.276 40.000 0.00 0.00 0.00 3.24
5022 7206 6.214412 AGACACCACTCTCTTTAATCAGGATT 59.786 38.462 0.00 0.00 34.93 3.01
5023 7207 6.410540 ACACCACTCTCTTTAATCAGGATTC 58.589 40.000 0.00 0.00 32.50 2.52
5024 7208 5.819901 CACCACTCTCTTTAATCAGGATTCC 59.180 44.000 0.00 0.00 32.50 3.01
5025 7209 5.488919 ACCACTCTCTTTAATCAGGATTCCA 59.511 40.000 5.29 0.00 32.50 3.53
5026 7210 6.054295 CCACTCTCTTTAATCAGGATTCCAG 58.946 44.000 5.29 0.00 32.50 3.86
5027 7211 6.054295 CACTCTCTTTAATCAGGATTCCAGG 58.946 44.000 5.29 0.00 32.50 4.45
5028 7212 5.131809 ACTCTCTTTAATCAGGATTCCAGGG 59.868 44.000 5.29 0.00 32.50 4.45
5029 7213 5.288687 TCTCTTTAATCAGGATTCCAGGGA 58.711 41.667 5.29 0.00 32.50 4.20
5030 7214 5.913534 TCTCTTTAATCAGGATTCCAGGGAT 59.086 40.000 5.29 2.33 32.50 3.85
5031 7215 5.945310 TCTTTAATCAGGATTCCAGGGATG 58.055 41.667 5.29 0.00 32.50 3.51
5032 7216 5.671735 TCTTTAATCAGGATTCCAGGGATGA 59.328 40.000 5.29 0.00 32.50 2.92
5033 7217 6.333702 TCTTTAATCAGGATTCCAGGGATGAT 59.666 38.462 5.29 2.14 32.50 2.45
5034 7218 6.535161 TTAATCAGGATTCCAGGGATGATT 57.465 37.500 16.75 16.75 39.81 2.57
5035 7219 4.654389 ATCAGGATTCCAGGGATGATTC 57.346 45.455 5.29 0.00 0.00 2.52
5036 7220 3.673343 TCAGGATTCCAGGGATGATTCT 58.327 45.455 5.29 0.00 0.00 2.40
5037 7221 4.831314 TCAGGATTCCAGGGATGATTCTA 58.169 43.478 5.29 0.00 0.00 2.10
5038 7222 5.226803 TCAGGATTCCAGGGATGATTCTAA 58.773 41.667 5.29 0.00 0.00 2.10
5039 7223 5.309020 TCAGGATTCCAGGGATGATTCTAAG 59.691 44.000 5.29 0.00 0.00 2.18
5040 7224 4.600983 AGGATTCCAGGGATGATTCTAAGG 59.399 45.833 5.29 0.00 0.00 2.69
5041 7225 3.864789 TTCCAGGGATGATTCTAAGGC 57.135 47.619 0.00 0.00 0.00 4.35
5042 7226 2.057922 TCCAGGGATGATTCTAAGGCC 58.942 52.381 0.00 0.00 0.00 5.19
5043 7227 2.061061 CCAGGGATGATTCTAAGGCCT 58.939 52.381 0.00 0.00 0.00 5.19
5044 7228 2.444766 CCAGGGATGATTCTAAGGCCTT 59.555 50.000 24.18 24.18 0.00 4.35
5045 7229 3.484407 CAGGGATGATTCTAAGGCCTTG 58.516 50.000 28.77 17.30 0.00 3.61
5046 7230 3.117738 CAGGGATGATTCTAAGGCCTTGT 60.118 47.826 28.77 11.07 0.00 3.16
5047 7231 4.103153 CAGGGATGATTCTAAGGCCTTGTA 59.897 45.833 28.77 12.88 0.00 2.41
5048 7232 4.916424 AGGGATGATTCTAAGGCCTTGTAT 59.084 41.667 28.77 17.16 0.00 2.29
5049 7233 6.013379 CAGGGATGATTCTAAGGCCTTGTATA 60.013 42.308 28.77 6.91 0.00 1.47
5050 7234 6.562608 AGGGATGATTCTAAGGCCTTGTATAA 59.437 38.462 28.77 15.81 0.00 0.98
5051 7235 7.240616 AGGGATGATTCTAAGGCCTTGTATAAT 59.759 37.037 28.77 19.47 0.00 1.28
5052 7236 7.337942 GGGATGATTCTAAGGCCTTGTATAATG 59.662 40.741 28.77 8.90 0.00 1.90
5053 7237 7.337942 GGATGATTCTAAGGCCTTGTATAATGG 59.662 40.741 28.77 1.25 0.00 3.16
5054 7238 6.542821 TGATTCTAAGGCCTTGTATAATGGG 58.457 40.000 28.77 6.59 0.00 4.00
5055 7239 6.331572 TGATTCTAAGGCCTTGTATAATGGGA 59.668 38.462 28.77 2.40 0.00 4.37
5056 7240 5.825593 TCTAAGGCCTTGTATAATGGGAG 57.174 43.478 28.77 12.95 0.00 4.30
5057 7241 3.884037 AAGGCCTTGTATAATGGGAGG 57.116 47.619 19.73 0.00 0.00 4.30
5058 7242 2.789219 AGGCCTTGTATAATGGGAGGT 58.211 47.619 0.00 0.00 0.00 3.85
5059 7243 2.443255 AGGCCTTGTATAATGGGAGGTG 59.557 50.000 0.00 0.00 0.00 4.00
5060 7244 2.230660 GCCTTGTATAATGGGAGGTGC 58.769 52.381 0.00 0.00 0.00 5.01
5061 7245 2.158608 GCCTTGTATAATGGGAGGTGCT 60.159 50.000 0.00 0.00 0.00 4.40
5062 7246 3.688414 GCCTTGTATAATGGGAGGTGCTT 60.688 47.826 0.00 0.00 0.00 3.91
5063 7247 4.445735 GCCTTGTATAATGGGAGGTGCTTA 60.446 45.833 0.00 0.00 0.00 3.09
5064 7248 5.308825 CCTTGTATAATGGGAGGTGCTTAG 58.691 45.833 0.00 0.00 0.00 2.18
5065 7249 4.974645 TGTATAATGGGAGGTGCTTAGG 57.025 45.455 0.00 0.00 0.00 2.69
5066 7250 3.650942 TGTATAATGGGAGGTGCTTAGGG 59.349 47.826 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.419791 TCTAACCAATACACCCTATGTTTGG 58.580 40.000 14.23 14.23 45.43 3.28
6 7 9.273016 CTATCTAACCAATACACCCTATGTTTG 57.727 37.037 0.00 0.00 43.19 2.93
12 13 8.645110 GTTTAGCTATCTAACCAATACACCCTA 58.355 37.037 0.00 0.00 34.71 3.53
18 19 8.712285 TGTGTGTTTAGCTATCTAACCAATAC 57.288 34.615 0.00 0.00 34.71 1.89
40 44 9.974980 TCAATCAATTTGATTCATCCATATGTG 57.025 29.630 19.34 7.16 43.03 3.21
186 192 5.516768 GGGAGGGGATTTCATTAGGGTTATC 60.517 48.000 0.00 0.00 0.00 1.75
188 194 3.725267 GGGAGGGGATTTCATTAGGGTTA 59.275 47.826 0.00 0.00 0.00 2.85
197 203 0.919289 GTGAGGGGGAGGGGATTTCA 60.919 60.000 0.00 0.00 0.00 2.69
199 205 0.479589 TTGTGAGGGGGAGGGGATTT 60.480 55.000 0.00 0.00 0.00 2.17
298 304 1.384191 CCTTGCCAAAGCCCTAGGT 59.616 57.895 8.29 0.00 38.69 3.08
323 329 2.577059 CCTTAGCGTTGAGGCCGA 59.423 61.111 0.00 0.00 0.00 5.54
344 350 0.391263 CCTTGGTAGAAGGTCGGTGC 60.391 60.000 0.00 0.00 32.78 5.01
419 425 6.203723 GGCCACTTAACATTGCAAAATAAACA 59.796 34.615 1.71 0.00 0.00 2.83
500 506 1.242076 GATGGCCCATATGAGCACAC 58.758 55.000 11.64 0.00 0.00 3.82
514 520 6.677913 ACTTTGTTGTAGTAAATGTGATGGC 58.322 36.000 0.00 0.00 0.00 4.40
949 1003 0.617535 GAGGTTTGGGGGATTTGGGG 60.618 60.000 0.00 0.00 0.00 4.96
1110 1632 1.729470 GGAGCTCGATCTTGCGGAGA 61.729 60.000 7.83 0.00 39.13 3.71
1470 2047 4.939368 CCGTTGGTGGCCGTGGAA 62.939 66.667 0.00 0.00 0.00 3.53
2133 2773 2.224621 CCTGAAGGCTTCTTGTTCTCCA 60.225 50.000 26.26 4.21 0.00 3.86
2135 2775 2.431454 CCCTGAAGGCTTCTTGTTCTC 58.569 52.381 26.26 0.00 0.00 2.87
2157 2800 4.789075 CATGCCGCAGTTGCAGCC 62.789 66.667 9.60 0.00 43.42 4.85
2180 2823 1.001641 GCTTGGGCATCAGGTCTGT 60.002 57.895 0.00 0.00 38.54 3.41
2335 2993 1.340017 TGGTTGCTTCTGATGGGCTAC 60.340 52.381 0.00 0.00 0.00 3.58
2382 3040 2.102588 ACGTCCCTCATACATGGTAAGC 59.897 50.000 0.00 0.00 0.00 3.09
2440 3098 4.972875 GCTTAGTGCAGCCCTGAT 57.027 55.556 0.00 0.00 42.31 2.90
2477 3135 4.469945 CCTGAGGGATAAACTAACTCACCA 59.530 45.833 0.00 0.00 34.73 4.17
2596 3627 1.069775 AGGTGTCCGTGGGGTAAATT 58.930 50.000 0.00 0.00 33.83 1.82
2598 3629 1.624813 CTTAGGTGTCCGTGGGGTAAA 59.375 52.381 0.00 0.00 33.83 2.01
2664 4218 3.568007 GCAGAAAGTTCCACCACATGTTA 59.432 43.478 0.00 0.00 0.00 2.41
2682 4240 0.033503 TGATGGAGGTCGGTAGCAGA 60.034 55.000 0.00 0.00 0.00 4.26
2838 4398 6.456447 AATCATGCACTCAAACAAAAATCG 57.544 33.333 0.00 0.00 0.00 3.34
2899 4464 1.619654 TCTCCCACCAACAATGCTTG 58.380 50.000 0.00 0.00 0.00 4.01
3028 4615 6.036470 GCTTGTTCCTATAAGATGGCAAAAC 58.964 40.000 0.00 0.00 0.00 2.43
3156 4743 5.738619 TGTGTGTGATGGTAGTAGTCATT 57.261 39.130 0.00 0.00 0.00 2.57
3242 4829 2.058798 TCGTTCTTGTTGCTAAGCTCG 58.941 47.619 0.00 0.00 0.00 5.03
3392 5040 2.100916 GAGTATATGGAGCCGTGTGTGT 59.899 50.000 0.00 0.00 0.00 3.72
3419 5085 3.179433 GCGACAAGCTTTTTGGGAC 57.821 52.632 0.00 0.00 44.04 4.46
3430 5096 2.358957 TCCATCCATTTGAGCGACAAG 58.641 47.619 0.00 0.00 39.77 3.16
3434 5100 6.550938 AGATATATCCATCCATTTGAGCGA 57.449 37.500 9.18 0.00 0.00 4.93
3438 5104 8.384693 AGTGCTAGATATATCCATCCATTTGA 57.615 34.615 9.18 0.00 0.00 2.69
3441 5107 9.499369 ACTTAGTGCTAGATATATCCATCCATT 57.501 33.333 9.18 2.29 0.00 3.16
3442 5108 9.499369 AACTTAGTGCTAGATATATCCATCCAT 57.501 33.333 9.18 0.00 0.00 3.41
3443 5109 8.901472 AACTTAGTGCTAGATATATCCATCCA 57.099 34.615 9.18 0.00 0.00 3.41
3444 5110 9.593134 CAAACTTAGTGCTAGATATATCCATCC 57.407 37.037 9.18 0.00 0.00 3.51
3447 5113 8.297426 CGACAAACTTAGTGCTAGATATATCCA 58.703 37.037 9.18 0.00 0.00 3.41
3448 5114 7.273815 GCGACAAACTTAGTGCTAGATATATCC 59.726 40.741 9.18 0.00 0.00 2.59
3449 5115 8.024285 AGCGACAAACTTAGTGCTAGATATATC 58.976 37.037 4.42 4.42 0.00 1.63
3452 5118 6.150396 AGCGACAAACTTAGTGCTAGATAT 57.850 37.500 0.00 0.00 0.00 1.63
3454 5120 4.082190 TGAGCGACAAACTTAGTGCTAGAT 60.082 41.667 0.00 0.00 31.88 1.98
3455 5121 3.254903 TGAGCGACAAACTTAGTGCTAGA 59.745 43.478 0.00 0.00 31.88 2.43
3456 5122 3.575630 TGAGCGACAAACTTAGTGCTAG 58.424 45.455 0.00 0.00 31.88 3.42
3458 5124 2.526304 TGAGCGACAAACTTAGTGCT 57.474 45.000 0.00 0.00 34.96 4.40
3459 5125 3.602390 TTTGAGCGACAAACTTAGTGC 57.398 42.857 7.75 0.00 42.57 4.40
3469 5135 2.715749 ATCCATCCATTTGAGCGACA 57.284 45.000 0.00 0.00 0.00 4.35
3471 5137 5.674525 GGATATATCCATCCATTTGAGCGA 58.325 41.667 24.41 0.00 46.38 4.93
3472 5138 5.998454 GGATATATCCATCCATTTGAGCG 57.002 43.478 24.41 0.00 46.38 5.03
3485 5151 8.277329 TTGTCGCTCAAATGGATGGATATATCC 61.277 40.741 22.92 22.92 38.99 2.59
3486 5152 6.108687 TGTCGCTCAAATGGATGGATATATC 58.891 40.000 3.96 3.96 0.00 1.63
3487 5153 6.053632 TGTCGCTCAAATGGATGGATATAT 57.946 37.500 0.00 0.00 0.00 0.86
3488 5154 5.482163 TGTCGCTCAAATGGATGGATATA 57.518 39.130 0.00 0.00 0.00 0.86
3489 5155 4.356405 TGTCGCTCAAATGGATGGATAT 57.644 40.909 0.00 0.00 0.00 1.63
3490 5156 3.836365 TGTCGCTCAAATGGATGGATA 57.164 42.857 0.00 0.00 0.00 2.59
3491 5157 2.715749 TGTCGCTCAAATGGATGGAT 57.284 45.000 0.00 0.00 0.00 3.41
3492 5158 2.358957 CTTGTCGCTCAAATGGATGGA 58.641 47.619 0.00 0.00 35.48 3.41
3493 5159 1.202222 GCTTGTCGCTCAAATGGATGG 60.202 52.381 0.00 0.00 35.48 3.51
3494 5160 2.184385 GCTTGTCGCTCAAATGGATG 57.816 50.000 0.00 0.00 35.48 3.51
3597 5263 1.347320 GCTGACTGTGTTAGCGGTAC 58.653 55.000 0.00 0.00 35.61 3.34
3670 5439 5.068591 GGGCAACATTGGTATTTAACCTAGG 59.931 44.000 7.41 7.41 44.74 3.02
3671 5440 5.654650 TGGGCAACATTGGTATTTAACCTAG 59.345 40.000 0.00 0.00 44.74 3.02
3726 5495 8.456471 CCACAATTAGTAATCATAGCATGGATG 58.544 37.037 0.00 0.00 0.00 3.51
3823 5593 0.400670 GGAATCCCTCCCCACTAGCT 60.401 60.000 0.00 0.00 38.44 3.32
4343 6124 2.908634 CAGAAAAACTACAGCACAGCG 58.091 47.619 0.00 0.00 0.00 5.18
4395 6176 9.196139 AGTTCAAAGCAGTAGAGAGAACTATAT 57.804 33.333 0.00 0.00 41.47 0.86
4398 6179 6.717540 AGAGTTCAAAGCAGTAGAGAGAACTA 59.282 38.462 0.00 0.00 42.79 2.24
4500 6281 2.282745 AGAGGCAGCAAGTTGGGC 60.283 61.111 4.75 1.18 0.00 5.36
4622 6684 3.118592 AGGACTAGCCAACATACTTGCTC 60.119 47.826 6.07 0.00 40.02 4.26
4624 6686 3.268023 AGGACTAGCCAACATACTTGC 57.732 47.619 6.07 0.00 40.02 4.01
4630 6692 7.010771 TGTATATCTGTAGGACTAGCCAACAT 58.989 38.462 6.07 0.00 40.02 2.71
4689 6751 4.278170 TGTGCTTTCCATCAAAACCACTAG 59.722 41.667 0.00 0.00 31.84 2.57
4704 6766 2.224018 TGGGCTGAAAACATGTGCTTTC 60.224 45.455 13.74 13.74 32.42 2.62
4709 6771 5.634859 GTCTTTAATGGGCTGAAAACATGTG 59.365 40.000 0.00 0.00 0.00 3.21
4712 6774 5.047092 CAGGTCTTTAATGGGCTGAAAACAT 60.047 40.000 0.00 0.00 0.00 2.71
4713 6775 4.280677 CAGGTCTTTAATGGGCTGAAAACA 59.719 41.667 0.00 0.00 0.00 2.83
4751 6935 8.530804 AAAGATATTTTTCATTCCAGGGAGAG 57.469 34.615 0.00 0.00 0.00 3.20
4796 6980 3.378427 GCCAGGCTACAGATTTAACAAGG 59.622 47.826 3.29 0.00 0.00 3.61
4814 6998 8.131100 CCATTACAAAAGTTCATATACAGCCAG 58.869 37.037 0.00 0.00 0.00 4.85
4816 7000 7.425606 CCCATTACAAAAGTTCATATACAGCC 58.574 38.462 0.00 0.00 0.00 4.85
4818 7002 8.746052 TCCCCATTACAAAAGTTCATATACAG 57.254 34.615 0.00 0.00 0.00 2.74
4819 7003 9.707957 AATCCCCATTACAAAAGTTCATATACA 57.292 29.630 0.00 0.00 0.00 2.29
4825 7009 9.771534 CTTAAAAATCCCCATTACAAAAGTTCA 57.228 29.630 0.00 0.00 0.00 3.18
4832 7016 7.013834 AGTCACCTTAAAAATCCCCATTACAA 58.986 34.615 0.00 0.00 0.00 2.41
4852 7036 4.832248 TCATCATGGAACCTTGTAGTCAC 58.168 43.478 0.00 0.00 0.00 3.67
4855 7039 6.957631 TGTAATCATCATGGAACCTTGTAGT 58.042 36.000 0.00 0.00 0.00 2.73
4904 7088 1.460497 GACCCTCATCCTCTCCCCC 60.460 68.421 0.00 0.00 0.00 5.40
4926 7110 1.671901 CCCACGCCCAACAACACTTT 61.672 55.000 0.00 0.00 0.00 2.66
4935 7119 0.693622 TCAAAGTATCCCACGCCCAA 59.306 50.000 0.00 0.00 0.00 4.12
5020 7204 3.075134 GGCCTTAGAATCATCCCTGGAAT 59.925 47.826 0.00 0.00 0.00 3.01
5021 7205 2.443255 GGCCTTAGAATCATCCCTGGAA 59.557 50.000 0.00 0.00 0.00 3.53
5022 7206 2.057922 GGCCTTAGAATCATCCCTGGA 58.942 52.381 0.00 0.00 0.00 3.86
5023 7207 2.061061 AGGCCTTAGAATCATCCCTGG 58.939 52.381 0.00 0.00 0.00 4.45
5024 7208 3.117738 ACAAGGCCTTAGAATCATCCCTG 60.118 47.826 20.00 3.95 0.00 4.45
5025 7209 3.126453 ACAAGGCCTTAGAATCATCCCT 58.874 45.455 20.00 0.00 0.00 4.20
5026 7210 3.584733 ACAAGGCCTTAGAATCATCCC 57.415 47.619 20.00 0.00 0.00 3.85
5027 7211 7.337942 CCATTATACAAGGCCTTAGAATCATCC 59.662 40.741 20.00 0.00 0.00 3.51
5028 7212 7.337942 CCCATTATACAAGGCCTTAGAATCATC 59.662 40.741 20.00 0.00 0.00 2.92
5029 7213 7.018550 TCCCATTATACAAGGCCTTAGAATCAT 59.981 37.037 20.00 6.25 0.00 2.45
5030 7214 6.331572 TCCCATTATACAAGGCCTTAGAATCA 59.668 38.462 20.00 4.04 0.00 2.57
5031 7215 6.779860 TCCCATTATACAAGGCCTTAGAATC 58.220 40.000 20.00 0.00 0.00 2.52
5032 7216 6.240292 CCTCCCATTATACAAGGCCTTAGAAT 60.240 42.308 20.00 10.05 0.00 2.40
5033 7217 5.073144 CCTCCCATTATACAAGGCCTTAGAA 59.927 44.000 20.00 7.83 0.00 2.10
5034 7218 4.597507 CCTCCCATTATACAAGGCCTTAGA 59.402 45.833 20.00 9.52 0.00 2.10
5035 7219 4.351111 ACCTCCCATTATACAAGGCCTTAG 59.649 45.833 20.00 15.05 0.00 2.18
5036 7220 4.104102 CACCTCCCATTATACAAGGCCTTA 59.896 45.833 20.00 3.48 0.00 2.69
5037 7221 3.117512 CACCTCCCATTATACAAGGCCTT 60.118 47.826 13.78 13.78 0.00 4.35
5038 7222 2.443255 CACCTCCCATTATACAAGGCCT 59.557 50.000 0.00 0.00 0.00 5.19
5039 7223 2.863809 CACCTCCCATTATACAAGGCC 58.136 52.381 0.00 0.00 0.00 5.19
5040 7224 2.158608 AGCACCTCCCATTATACAAGGC 60.159 50.000 0.00 0.00 0.00 4.35
5041 7225 3.864789 AGCACCTCCCATTATACAAGG 57.135 47.619 0.00 0.00 0.00 3.61
5042 7226 5.308825 CCTAAGCACCTCCCATTATACAAG 58.691 45.833 0.00 0.00 0.00 3.16
5043 7227 4.104102 CCCTAAGCACCTCCCATTATACAA 59.896 45.833 0.00 0.00 0.00 2.41
5044 7228 3.650942 CCCTAAGCACCTCCCATTATACA 59.349 47.826 0.00 0.00 0.00 2.29
5045 7229 4.287766 CCCTAAGCACCTCCCATTATAC 57.712 50.000 0.00 0.00 0.00 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.