Multiple sequence alignment - TraesCS5B01G030300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G030300 chr5B 100.000 3480 0 0 1 3480 33558512 33555033 0.000000e+00 6427.0
1 TraesCS5B01G030300 chr5B 100.000 46 0 0 2865 2910 513402399 513402354 6.190000e-13 86.1
2 TraesCS5B01G030300 chr5A 86.220 2061 121 76 633 2632 28227683 28229641 0.000000e+00 2082.0
3 TraesCS5B01G030300 chr5A 90.149 538 44 6 1 534 28227132 28227664 0.000000e+00 691.0
4 TraesCS5B01G030300 chr5A 81.915 470 33 13 2912 3331 28229854 28230321 1.990000e-92 350.0
5 TraesCS5B01G030300 chr5A 91.667 96 8 0 2635 2730 28229719 28229814 2.180000e-27 134.0
6 TraesCS5B01G030300 chr5D 88.542 1667 63 32 1122 2733 40183040 40184633 0.000000e+00 1903.0
7 TraesCS5B01G030300 chr5D 89.839 807 57 11 1 801 40181732 40182519 0.000000e+00 1013.0
8 TraesCS5B01G030300 chr5D 85.520 442 21 7 2912 3312 40184856 40185295 4.150000e-114 422.0
9 TraesCS5B01G030300 chr5D 87.164 335 21 10 802 1124 40182614 40182938 9.180000e-96 361.0
10 TraesCS5B01G030300 chr5D 92.982 57 3 1 2810 2865 40184815 40184871 8.010000e-12 82.4
11 TraesCS5B01G030300 chr4D 88.600 693 64 12 1 684 291532262 291532948 0.000000e+00 828.0
12 TraesCS5B01G030300 chr4D 78.622 1422 106 78 1153 2534 291586578 291587841 0.000000e+00 760.0
13 TraesCS5B01G030300 chr4D 80.368 326 24 18 809 1124 291578250 291578545 9.790000e-51 211.0
14 TraesCS5B01G030300 chr4D 79.538 303 29 10 3053 3335 291630347 291630636 5.930000e-43 185.0
15 TraesCS5B01G030300 chr7B 78.111 900 107 40 1123 1977 719146548 719147402 4.040000e-134 488.0
16 TraesCS5B01G030300 chr7B 91.213 239 12 5 2026 2258 719147415 719147650 2.020000e-82 316.0
17 TraesCS5B01G030300 chr2D 92.500 80 3 3 1890 1967 64158333 64158411 1.020000e-20 111.0
18 TraesCS5B01G030300 chr2D 88.889 72 7 1 1658 1728 535561664 535561593 1.720000e-13 87.9
19 TraesCS5B01G030300 chr2D 97.826 46 0 1 2866 2910 650879180 650879225 1.040000e-10 78.7
20 TraesCS5B01G030300 chr2A 93.421 76 3 2 1890 1964 65653843 65653917 1.020000e-20 111.0
21 TraesCS5B01G030300 chr2B 92.105 76 4 2 1890 1964 100326801 100326875 4.750000e-19 106.0
22 TraesCS5B01G030300 chr2B 97.826 46 0 1 2866 2910 779865752 779865797 1.040000e-10 78.7
23 TraesCS5B01G030300 chr2B 97.826 46 0 1 2866 2910 779878449 779878494 1.040000e-10 78.7
24 TraesCS5B01G030300 chr1D 88.889 72 7 1 1658 1728 73712824 73712753 1.720000e-13 87.9
25 TraesCS5B01G030300 chr1D 92.453 53 1 3 2861 2910 295143700 295143752 4.820000e-09 73.1
26 TraesCS5B01G030300 chr4A 96.000 50 2 0 2865 2914 72899938 72899889 8.010000e-12 82.4
27 TraesCS5B01G030300 chr7D 95.918 49 1 1 2863 2910 544552651 544552699 1.040000e-10 78.7
28 TraesCS5B01G030300 chr6A 97.826 46 0 1 2866 2910 229103873 229103918 1.040000e-10 78.7
29 TraesCS5B01G030300 chr7A 97.674 43 0 1 2870 2911 643087001 643086959 4.820000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G030300 chr5B 33555033 33558512 3479 True 6427.00 6427 100.00000 1 3480 1 chr5B.!!$R1 3479
1 TraesCS5B01G030300 chr5A 28227132 28230321 3189 False 814.25 2082 87.48775 1 3331 4 chr5A.!!$F1 3330
2 TraesCS5B01G030300 chr5D 40181732 40185295 3563 False 756.28 1903 88.80940 1 3312 5 chr5D.!!$F1 3311
3 TraesCS5B01G030300 chr4D 291532262 291532948 686 False 828.00 828 88.60000 1 684 1 chr4D.!!$F1 683
4 TraesCS5B01G030300 chr4D 291586578 291587841 1263 False 760.00 760 78.62200 1153 2534 1 chr4D.!!$F3 1381
5 TraesCS5B01G030300 chr7B 719146548 719147650 1102 False 402.00 488 84.66200 1123 2258 2 chr7B.!!$F1 1135

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
844 954 0.108472 GCCTGGTAGTACCACGGAAC 60.108 60.0 28.28 15.51 44.79 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2788 3473 0.03601 CACCGGGAGAGCAGTCATTT 60.036 55.0 6.32 0.0 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 98 7.176690 GGGATGGAAGAGTTTAGAACAAATGAA 59.823 37.037 0.00 0.00 0.00 2.57
124 126 5.456548 TTGTGATGTGAGAATTTGTGCAT 57.543 34.783 0.00 0.00 0.00 3.96
253 257 6.312918 AGAATGCATGCATTTTGATGTTTCTC 59.687 34.615 38.66 24.45 45.50 2.87
254 258 4.884247 TGCATGCATTTTGATGTTTCTCA 58.116 34.783 18.46 0.00 0.00 3.27
265 269 9.793252 ATTTTGATGTTTCTCAGTATTATGCAC 57.207 29.630 0.00 0.00 0.00 4.57
268 272 5.801350 TGTTTCTCAGTATTATGCACTGC 57.199 39.130 0.00 0.00 42.58 4.40
281 285 2.488952 TGCACTGCAAATCGTGAAGTA 58.511 42.857 0.00 0.00 45.29 2.24
282 286 2.875317 TGCACTGCAAATCGTGAAGTAA 59.125 40.909 0.00 0.00 45.29 2.24
283 287 3.313803 TGCACTGCAAATCGTGAAGTAAA 59.686 39.130 0.00 0.00 45.29 2.01
448 460 3.189285 GCAGAATTTGTTGTTGTGCAGT 58.811 40.909 3.52 0.00 43.13 4.40
473 485 6.411376 TGATATCCAACGGTCAATAGTGTTT 58.589 36.000 0.00 0.00 0.00 2.83
479 491 5.856455 CCAACGGTCAATAGTGTTTCAAATC 59.144 40.000 0.00 0.00 0.00 2.17
493 505 8.472413 AGTGTTTCAAATCTGCTATATTTGCAT 58.528 29.630 11.67 0.00 41.82 3.96
512 524 1.097232 TTGGCAGATTGGCTTCATCG 58.903 50.000 4.25 0.00 44.10 3.84
652 668 5.050091 GGTAATCATAATCAGTGAACAGCGG 60.050 44.000 0.00 0.00 0.00 5.52
660 676 1.872952 CAGTGAACAGCGGTTTGATGA 59.127 47.619 3.10 0.00 37.36 2.92
673 689 5.849604 GCGGTTTGATGACAACTTTAGTTAC 59.150 40.000 0.00 0.00 36.32 2.50
691 707 2.184322 CGCGTGGATGCCAGTACT 59.816 61.111 0.00 0.00 32.34 2.73
694 710 1.502231 GCGTGGATGCCAGTACTATG 58.498 55.000 0.00 0.00 32.34 2.23
695 711 1.068588 GCGTGGATGCCAGTACTATGA 59.931 52.381 0.00 0.00 32.34 2.15
696 712 2.289072 GCGTGGATGCCAGTACTATGAT 60.289 50.000 0.00 0.00 32.34 2.45
806 916 5.657302 ACTCTCAAATATCAACCTCGGTACT 59.343 40.000 0.00 0.00 0.00 2.73
819 929 5.721232 ACCTCGGTACTGTAGAATTCTTTG 58.279 41.667 14.36 6.86 0.00 2.77
823 933 4.561606 CGGTACTGTAGAATTCTTTGACGG 59.438 45.833 14.36 13.11 0.00 4.79
833 943 2.047655 TTTGACGGCGCCTGGTAG 60.048 61.111 26.68 11.18 0.00 3.18
834 944 2.781595 CTTTGACGGCGCCTGGTAGT 62.782 60.000 26.68 14.92 0.00 2.73
835 945 1.534336 TTTGACGGCGCCTGGTAGTA 61.534 55.000 26.68 3.27 0.00 1.82
836 946 2.103736 GACGGCGCCTGGTAGTAC 59.896 66.667 26.68 5.13 0.00 2.73
837 947 3.421687 GACGGCGCCTGGTAGTACC 62.422 68.421 26.68 12.80 39.22 3.34
839 949 2.186125 GGCGCCTGGTAGTACCAC 59.814 66.667 22.15 8.79 44.79 4.16
840 950 2.202703 GCGCCTGGTAGTACCACG 60.203 66.667 21.92 21.92 44.79 4.94
841 951 2.493030 CGCCTGGTAGTACCACGG 59.507 66.667 18.45 21.54 44.79 4.94
842 952 2.048023 CGCCTGGTAGTACCACGGA 61.048 63.158 28.28 8.86 44.79 4.69
843 953 1.597797 CGCCTGGTAGTACCACGGAA 61.598 60.000 28.28 8.55 44.79 4.30
844 954 0.108472 GCCTGGTAGTACCACGGAAC 60.108 60.000 28.28 15.51 44.79 3.62
889 999 1.515081 GCCGCCTGTGTACTAACAAA 58.485 50.000 0.00 0.00 37.36 2.83
890 1000 1.196127 GCCGCCTGTGTACTAACAAAC 59.804 52.381 0.00 0.00 37.36 2.93
892 1002 3.071479 CCGCCTGTGTACTAACAAACAT 58.929 45.455 0.00 0.00 37.36 2.71
902 1012 1.465387 CTAACAAACATTACGGCCGCA 59.535 47.619 28.58 10.63 0.00 5.69
964 1074 2.043752 TCGTACTCCATCCCCGCA 60.044 61.111 0.00 0.00 0.00 5.69
968 1078 1.841556 TACTCCATCCCCGCATCCC 60.842 63.158 0.00 0.00 0.00 3.85
978 1088 1.358152 CCCGCATCCCCCTCTATAAA 58.642 55.000 0.00 0.00 0.00 1.40
1010 1120 2.836672 ATCTGCTGCCTCCCCTGAGT 62.837 60.000 0.00 0.00 36.86 3.41
1019 1129 4.785453 CCCCTGAGTTCCCAGCGC 62.785 72.222 0.00 0.00 32.97 5.92
1023 1138 3.672295 CTGAGTTCCCAGCGCCCTC 62.672 68.421 2.29 0.66 0.00 4.30
1393 1643 0.174389 GACGCTCATCAAGAGGCTCA 59.826 55.000 18.26 0.00 44.86 4.26
1401 1651 3.326006 TCATCAAGAGGCTCAACAAGTCT 59.674 43.478 18.26 0.00 44.72 3.24
1588 1895 2.202810 CGGCCTCGGAGAAGAAGC 60.203 66.667 6.58 0.35 34.09 3.86
1589 1896 2.188207 GGCCTCGGAGAAGAAGCC 59.812 66.667 6.58 6.53 34.09 4.35
1594 1901 2.202810 CGGAGAAGAAGCCGGAGC 60.203 66.667 5.05 0.00 43.67 4.70
1595 1902 2.982130 GGAGAAGAAGCCGGAGCA 59.018 61.111 5.05 0.00 43.56 4.26
1596 1903 1.153469 GGAGAAGAAGCCGGAGCAG 60.153 63.158 5.05 0.00 43.56 4.24
1597 1904 1.153469 GAGAAGAAGCCGGAGCAGG 60.153 63.158 5.05 0.00 43.56 4.85
1598 1905 1.608717 GAGAAGAAGCCGGAGCAGGA 61.609 60.000 5.05 0.00 43.56 3.86
1599 1906 1.153469 GAAGAAGCCGGAGCAGGAG 60.153 63.158 5.05 0.00 43.56 3.69
1600 1907 1.608717 GAAGAAGCCGGAGCAGGAGA 61.609 60.000 5.05 0.00 43.56 3.71
1837 2183 2.838225 ACGCGGATAGGTCCCTGG 60.838 66.667 12.47 0.00 41.83 4.45
2020 2390 1.350071 CTCCTCCTCCTCCATGATGG 58.650 60.000 4.74 4.74 39.43 3.51
2024 2394 1.415659 CTCCTCCTCCATGATGGTGAC 59.584 57.143 14.69 0.00 39.03 3.67
2217 2593 1.452651 CCAGGACTCGTACCGCCTA 60.453 63.158 0.00 0.00 0.00 3.93
2263 2639 1.526041 GCAGCGTCATGTGATCTGATC 59.474 52.381 10.72 10.72 32.77 2.92
2264 2640 2.817901 CAGCGTCATGTGATCTGATCA 58.182 47.619 16.06 16.06 36.84 2.92
2292 2668 1.294138 CCACCGGCGGAAAAGTAGA 59.706 57.895 35.78 0.00 0.00 2.59
2293 2669 0.739813 CCACCGGCGGAAAAGTAGAG 60.740 60.000 35.78 9.69 0.00 2.43
2294 2670 0.739813 CACCGGCGGAAAAGTAGAGG 60.740 60.000 35.78 0.55 0.00 3.69
2295 2671 1.814169 CCGGCGGAAAAGTAGAGGC 60.814 63.158 24.41 0.00 0.00 4.70
2296 2672 2.165301 CGGCGGAAAAGTAGAGGCG 61.165 63.158 0.00 0.00 43.73 5.52
2298 2677 2.461945 GCGGAAAAGTAGAGGCGGC 61.462 63.158 0.00 0.00 0.00 6.53
2301 2680 1.079336 GAAAAGTAGAGGCGGCCGT 60.079 57.895 28.70 7.71 0.00 5.68
2315 2694 1.001048 CGGCCGTCCTCATAATCGTAA 60.001 52.381 19.50 0.00 0.00 3.18
2316 2695 2.352421 CGGCCGTCCTCATAATCGTAAT 60.352 50.000 19.50 0.00 0.00 1.89
2318 2697 4.421948 GGCCGTCCTCATAATCGTAATAG 58.578 47.826 0.00 0.00 0.00 1.73
2320 2699 5.333513 GCCGTCCTCATAATCGTAATAGAG 58.666 45.833 0.00 0.00 0.00 2.43
2321 2700 5.123502 GCCGTCCTCATAATCGTAATAGAGA 59.876 44.000 0.00 0.00 0.00 3.10
2322 2701 6.544622 CCGTCCTCATAATCGTAATAGAGAC 58.455 44.000 0.00 0.00 0.00 3.36
2408 2804 5.770162 TCCTTGACCAATCCTTTTTCTTCTC 59.230 40.000 0.00 0.00 0.00 2.87
2409 2805 5.536161 CCTTGACCAATCCTTTTTCTTCTCA 59.464 40.000 0.00 0.00 0.00 3.27
2526 2944 3.567397 TGAGATCTTCCACCCTACTAGC 58.433 50.000 0.00 0.00 0.00 3.42
2530 2948 3.185880 TCTTCCACCCTACTAGCACTT 57.814 47.619 0.00 0.00 0.00 3.16
2581 3000 7.098477 ACATGAGAGAGAGAAACATGAAAGAG 58.902 38.462 0.00 0.00 40.13 2.85
2587 3006 8.835439 AGAGAGAGAAACATGAAAGAGAAAAAC 58.165 33.333 0.00 0.00 0.00 2.43
2684 3185 5.563876 ATCCAATCATGCATGTCTAGAGT 57.436 39.130 25.43 2.92 0.00 3.24
2730 3415 2.125753 CGTGAGCAGCCTCTGACC 60.126 66.667 0.00 0.00 38.93 4.02
2731 3416 2.935740 CGTGAGCAGCCTCTGACCA 61.936 63.158 0.00 0.00 38.93 4.02
2732 3417 1.372683 GTGAGCAGCCTCTGACCAA 59.627 57.895 0.00 0.00 38.93 3.67
2733 3418 0.952984 GTGAGCAGCCTCTGACCAAC 60.953 60.000 0.00 0.00 38.93 3.77
2734 3419 1.376553 GAGCAGCCTCTGACCAACC 60.377 63.158 0.00 0.00 35.16 3.77
2735 3420 2.743928 GCAGCCTCTGACCAACCG 60.744 66.667 0.00 0.00 32.44 4.44
2736 3421 2.743928 CAGCCTCTGACCAACCGC 60.744 66.667 0.00 0.00 32.44 5.68
2737 3422 2.925170 AGCCTCTGACCAACCGCT 60.925 61.111 0.00 0.00 0.00 5.52
2738 3423 2.032681 GCCTCTGACCAACCGCTT 59.967 61.111 0.00 0.00 0.00 4.68
2739 3424 1.192146 AGCCTCTGACCAACCGCTTA 61.192 55.000 0.00 0.00 0.00 3.09
2740 3425 0.321298 GCCTCTGACCAACCGCTTAA 60.321 55.000 0.00 0.00 0.00 1.85
2741 3426 1.880646 GCCTCTGACCAACCGCTTAAA 60.881 52.381 0.00 0.00 0.00 1.52
2742 3427 2.500229 CCTCTGACCAACCGCTTAAAA 58.500 47.619 0.00 0.00 0.00 1.52
2743 3428 2.882137 CCTCTGACCAACCGCTTAAAAA 59.118 45.455 0.00 0.00 0.00 1.94
2744 3429 3.304458 CCTCTGACCAACCGCTTAAAAAC 60.304 47.826 0.00 0.00 0.00 2.43
2745 3430 2.288458 TCTGACCAACCGCTTAAAAACG 59.712 45.455 0.00 0.00 0.00 3.60
2746 3431 1.268640 TGACCAACCGCTTAAAAACGC 60.269 47.619 0.00 0.00 0.00 4.84
2760 3445 4.957266 ACGCGAGTCATCAACGAA 57.043 50.000 15.93 0.00 44.19 3.85
2761 3446 3.188773 ACGCGAGTCATCAACGAAA 57.811 47.368 15.93 0.00 44.19 3.46
2762 3447 1.060713 ACGCGAGTCATCAACGAAAG 58.939 50.000 15.93 0.00 44.19 2.62
2763 3448 1.335597 ACGCGAGTCATCAACGAAAGA 60.336 47.619 15.93 0.00 44.19 2.52
2764 3449 1.057847 CGCGAGTCATCAACGAAAGAC 59.942 52.381 0.00 0.00 0.00 3.01
2765 3450 2.329379 GCGAGTCATCAACGAAAGACT 58.671 47.619 0.00 0.00 43.50 3.24
2766 3451 2.731976 GCGAGTCATCAACGAAAGACTT 59.268 45.455 0.00 0.00 41.10 3.01
2767 3452 3.184581 GCGAGTCATCAACGAAAGACTTT 59.815 43.478 0.00 0.00 41.10 2.66
2768 3453 4.692135 CGAGTCATCAACGAAAGACTTTG 58.308 43.478 4.85 0.81 41.10 2.77
2769 3454 4.444388 CGAGTCATCAACGAAAGACTTTGA 59.556 41.667 4.85 0.00 41.10 2.69
2770 3455 5.610552 CGAGTCATCAACGAAAGACTTTGAC 60.611 44.000 4.85 5.56 41.10 3.18
2771 3456 5.116180 AGTCATCAACGAAAGACTTTGACA 58.884 37.500 4.85 0.00 39.05 3.58
2772 3457 5.235186 AGTCATCAACGAAAGACTTTGACAG 59.765 40.000 4.85 0.00 39.05 3.51
2773 3458 5.234329 GTCATCAACGAAAGACTTTGACAGA 59.766 40.000 4.85 0.00 39.05 3.41
2774 3459 5.815222 TCATCAACGAAAGACTTTGACAGAA 59.185 36.000 4.85 0.00 39.05 3.02
2775 3460 5.718649 TCAACGAAAGACTTTGACAGAAG 57.281 39.130 4.85 0.00 33.02 2.85
2776 3461 4.570772 TCAACGAAAGACTTTGACAGAAGG 59.429 41.667 4.85 0.00 33.02 3.46
2777 3462 4.138487 ACGAAAGACTTTGACAGAAGGT 57.862 40.909 4.85 0.00 0.00 3.50
2778 3463 5.272283 ACGAAAGACTTTGACAGAAGGTA 57.728 39.130 4.85 0.00 0.00 3.08
2779 3464 5.667466 ACGAAAGACTTTGACAGAAGGTAA 58.333 37.500 4.85 0.00 0.00 2.85
2780 3465 6.110707 ACGAAAGACTTTGACAGAAGGTAAA 58.889 36.000 4.85 0.00 0.00 2.01
2781 3466 6.596497 ACGAAAGACTTTGACAGAAGGTAAAA 59.404 34.615 4.85 0.00 0.00 1.52
2782 3467 7.120138 ACGAAAGACTTTGACAGAAGGTAAAAA 59.880 33.333 4.85 0.00 29.25 1.94
2783 3468 8.129211 CGAAAGACTTTGACAGAAGGTAAAAAT 58.871 33.333 4.85 0.00 29.25 1.82
2804 3489 6.867662 AATAAATAAATGACTGCTCTCCCG 57.132 37.500 0.00 0.00 0.00 5.14
2805 3490 2.918712 ATAAATGACTGCTCTCCCGG 57.081 50.000 0.00 0.00 0.00 5.73
2806 3491 1.568504 TAAATGACTGCTCTCCCGGT 58.431 50.000 0.00 0.00 0.00 5.28
2807 3492 0.036010 AAATGACTGCTCTCCCGGTG 60.036 55.000 0.00 0.00 0.00 4.94
2808 3493 1.194781 AATGACTGCTCTCCCGGTGT 61.195 55.000 0.00 0.00 0.00 4.16
2812 3497 1.194781 ACTGCTCTCCCGGTGTGATT 61.195 55.000 0.00 0.00 0.00 2.57
2823 3508 1.692411 GGTGTGATTGATAAGGCCCC 58.308 55.000 0.00 0.00 0.00 5.80
2824 3509 1.308998 GTGTGATTGATAAGGCCCCG 58.691 55.000 0.00 0.00 0.00 5.73
2853 3539 1.613437 CCTTTTGCCACCGATCAAGTT 59.387 47.619 0.00 0.00 0.00 2.66
2854 3540 2.817258 CCTTTTGCCACCGATCAAGTTA 59.183 45.455 0.00 0.00 0.00 2.24
2855 3541 3.119849 CCTTTTGCCACCGATCAAGTTAG 60.120 47.826 0.00 0.00 0.00 2.34
2856 3542 1.448985 TTGCCACCGATCAAGTTAGC 58.551 50.000 0.00 0.00 0.00 3.09
2857 3543 0.323302 TGCCACCGATCAAGTTAGCA 59.677 50.000 0.00 0.00 0.00 3.49
2858 3544 0.727398 GCCACCGATCAAGTTAGCAC 59.273 55.000 0.00 0.00 0.00 4.40
2859 3545 0.999406 CCACCGATCAAGTTAGCACG 59.001 55.000 0.00 0.00 0.00 5.34
2860 3546 1.403647 CCACCGATCAAGTTAGCACGA 60.404 52.381 0.00 0.00 0.00 4.35
2861 3547 2.540515 CACCGATCAAGTTAGCACGAT 58.459 47.619 0.00 0.00 0.00 3.73
2862 3548 3.490249 CCACCGATCAAGTTAGCACGATA 60.490 47.826 0.00 0.00 0.00 2.92
2863 3549 4.109766 CACCGATCAAGTTAGCACGATAA 58.890 43.478 0.00 0.00 0.00 1.75
2864 3550 4.745125 CACCGATCAAGTTAGCACGATAAT 59.255 41.667 0.00 0.00 0.00 1.28
2865 3551 5.918576 CACCGATCAAGTTAGCACGATAATA 59.081 40.000 0.00 0.00 0.00 0.98
2866 3552 5.919141 ACCGATCAAGTTAGCACGATAATAC 59.081 40.000 0.00 0.00 0.00 1.89
2867 3553 5.345202 CCGATCAAGTTAGCACGATAATACC 59.655 44.000 0.00 0.00 0.00 2.73
2868 3554 5.918576 CGATCAAGTTAGCACGATAATACCA 59.081 40.000 0.00 0.00 0.00 3.25
2869 3555 6.129168 CGATCAAGTTAGCACGATAATACCAC 60.129 42.308 0.00 0.00 0.00 4.16
2870 3556 5.038683 TCAAGTTAGCACGATAATACCACG 58.961 41.667 0.00 0.00 0.00 4.94
2871 3557 4.644103 AGTTAGCACGATAATACCACGT 57.356 40.909 0.00 0.00 40.87 4.49
2878 3564 4.025015 ACGATAATACCACGTGACACTC 57.975 45.455 19.30 5.04 38.79 3.51
2879 3565 3.033873 CGATAATACCACGTGACACTCG 58.966 50.000 19.30 13.08 0.00 4.18
2880 3566 3.486375 CGATAATACCACGTGACACTCGT 60.486 47.826 19.30 7.66 42.33 4.18
2886 3572 3.859650 ACGTGACACTCGTGGTAAG 57.140 52.632 3.68 0.00 40.07 2.34
2887 3573 0.318445 ACGTGACACTCGTGGTAAGC 60.318 55.000 3.68 0.00 40.07 3.09
2888 3574 0.318360 CGTGACACTCGTGGTAAGCA 60.318 55.000 3.68 0.00 34.19 3.91
2889 3575 1.860676 GTGACACTCGTGGTAAGCAA 58.139 50.000 0.00 0.00 34.19 3.91
2890 3576 2.413837 GTGACACTCGTGGTAAGCAAT 58.586 47.619 0.00 0.00 34.19 3.56
2891 3577 2.412089 GTGACACTCGTGGTAAGCAATC 59.588 50.000 0.00 0.00 34.19 2.67
2892 3578 2.000447 GACACTCGTGGTAAGCAATCC 59.000 52.381 1.77 0.00 34.19 3.01
2893 3579 1.346395 ACACTCGTGGTAAGCAATCCA 59.654 47.619 1.77 0.00 34.19 3.41
2894 3580 2.224426 ACACTCGTGGTAAGCAATCCAA 60.224 45.455 1.77 0.00 35.38 3.53
2895 3581 2.811431 CACTCGTGGTAAGCAATCCAAA 59.189 45.455 0.00 0.00 35.38 3.28
2896 3582 2.812011 ACTCGTGGTAAGCAATCCAAAC 59.188 45.455 0.00 0.00 35.38 2.93
2897 3583 3.074412 CTCGTGGTAAGCAATCCAAACT 58.926 45.455 0.00 0.00 35.38 2.66
2898 3584 3.482436 TCGTGGTAAGCAATCCAAACTT 58.518 40.909 0.00 0.00 35.38 2.66
2899 3585 3.252215 TCGTGGTAAGCAATCCAAACTTG 59.748 43.478 0.00 0.00 35.38 3.16
2900 3586 3.252215 CGTGGTAAGCAATCCAAACTTGA 59.748 43.478 0.00 0.00 35.38 3.02
2901 3587 4.082787 CGTGGTAAGCAATCCAAACTTGAT 60.083 41.667 0.00 0.00 35.38 2.57
2902 3588 5.163513 GTGGTAAGCAATCCAAACTTGATG 58.836 41.667 0.00 0.00 35.38 3.07
2903 3589 5.048083 GTGGTAAGCAATCCAAACTTGATGA 60.048 40.000 0.00 0.00 35.38 2.92
2904 3590 5.538053 TGGTAAGCAATCCAAACTTGATGAA 59.462 36.000 0.00 0.00 0.00 2.57
2905 3591 6.041409 TGGTAAGCAATCCAAACTTGATGAAA 59.959 34.615 0.00 0.00 0.00 2.69
2906 3592 6.928492 GGTAAGCAATCCAAACTTGATGAAAA 59.072 34.615 0.00 0.00 0.00 2.29
2907 3593 7.440856 GGTAAGCAATCCAAACTTGATGAAAAA 59.559 33.333 0.00 0.00 0.00 1.94
2942 3632 6.358030 GCACGATAATGATGTTTAATCAGTGC 59.642 38.462 11.43 11.43 41.09 4.40
2971 3661 0.038251 GCAGCCCAACTTGTTTAGGC 60.038 55.000 13.48 13.48 44.20 3.93
3012 3702 1.244019 GCTGGCCGGTTTGTCTGAAT 61.244 55.000 14.55 0.00 0.00 2.57
3013 3703 0.523072 CTGGCCGGTTTGTCTGAATG 59.477 55.000 2.29 0.00 0.00 2.67
3037 3727 8.276271 ATGCTTTTCATATAGCTCATCGCTCAT 61.276 37.037 0.00 0.00 40.24 2.90
3078 3791 5.682212 GCTTTTGAATATAAGCAAGGGGGTG 60.682 44.000 3.54 0.00 44.70 4.61
3086 3799 2.198426 CAAGGGGGTGGTGCTTGT 59.802 61.111 0.00 0.00 0.00 3.16
3090 3803 3.580319 GGGGTGGTGCTTGTCCCT 61.580 66.667 0.00 0.00 39.80 4.20
3092 3805 2.358737 GGTGGTGCTTGTCCCTCG 60.359 66.667 0.00 0.00 0.00 4.63
3136 3871 3.118629 TCTCAGCTTGGGTGATCATGTAC 60.119 47.826 0.00 0.00 39.36 2.90
3202 3941 8.547967 TCATTAGAGTAAGCTAAACTGGTTTG 57.452 34.615 6.38 1.05 34.33 2.93
3218 3957 3.900601 TGGTTTGATTATTGTGGGTTGCT 59.099 39.130 0.00 0.00 0.00 3.91
3225 3964 0.709992 ATTGTGGGTTGCTGGGGTAT 59.290 50.000 0.00 0.00 0.00 2.73
3226 3965 0.251564 TTGTGGGTTGCTGGGGTATG 60.252 55.000 0.00 0.00 0.00 2.39
3245 3993 5.221244 GGTATGATAATGGAAAAGTGGTGGC 60.221 44.000 0.00 0.00 0.00 5.01
3313 4061 3.051581 AGGACAATGCATGGAGGTAGAT 58.948 45.455 8.45 0.00 0.00 1.98
3314 4062 3.072184 AGGACAATGCATGGAGGTAGATC 59.928 47.826 8.45 0.00 0.00 2.75
3324 4073 5.323581 CATGGAGGTAGATCAGAGAGATGA 58.676 45.833 0.00 0.00 37.00 2.92
3325 4074 4.984295 TGGAGGTAGATCAGAGAGATGAG 58.016 47.826 0.00 0.00 37.00 2.90
3328 4077 2.825532 GGTAGATCAGAGAGATGAGGGC 59.174 54.545 0.00 0.00 37.00 5.19
3329 4078 2.771562 AGATCAGAGAGATGAGGGCA 57.228 50.000 0.00 0.00 37.00 5.36
3330 4079 2.600790 AGATCAGAGAGATGAGGGCAG 58.399 52.381 0.00 0.00 37.00 4.85
3332 4081 0.398239 TCAGAGAGATGAGGGCAGGG 60.398 60.000 0.00 0.00 0.00 4.45
3333 4082 1.765657 AGAGAGATGAGGGCAGGGC 60.766 63.158 0.00 0.00 0.00 5.19
3334 4083 2.041762 AGAGATGAGGGCAGGGCA 59.958 61.111 0.00 0.00 0.00 5.36
3335 4084 2.042404 GAGAGATGAGGGCAGGGCAG 62.042 65.000 0.00 0.00 0.00 4.85
3336 4085 3.095163 AGATGAGGGCAGGGCAGG 61.095 66.667 0.00 0.00 0.00 4.85
3337 4086 4.201122 GATGAGGGCAGGGCAGGG 62.201 72.222 0.00 0.00 0.00 4.45
3368 4117 3.197790 CTGGCTCGATTGGCGGTG 61.198 66.667 0.00 0.00 41.33 4.94
3369 4118 4.776322 TGGCTCGATTGGCGGTGG 62.776 66.667 0.00 0.00 41.33 4.61
3370 4119 4.778143 GGCTCGATTGGCGGTGGT 62.778 66.667 0.00 0.00 41.33 4.16
3371 4120 2.746277 GCTCGATTGGCGGTGGTT 60.746 61.111 0.00 0.00 41.33 3.67
3372 4121 2.332654 GCTCGATTGGCGGTGGTTT 61.333 57.895 0.00 0.00 41.33 3.27
3373 4122 1.501741 CTCGATTGGCGGTGGTTTG 59.498 57.895 0.00 0.00 41.33 2.93
3374 4123 1.228003 TCGATTGGCGGTGGTTTGT 60.228 52.632 0.00 0.00 41.33 2.83
3375 4124 1.081509 CGATTGGCGGTGGTTTGTG 60.082 57.895 0.00 0.00 36.03 3.33
3376 4125 1.372872 GATTGGCGGTGGTTTGTGC 60.373 57.895 0.00 0.00 0.00 4.57
3377 4126 2.081425 GATTGGCGGTGGTTTGTGCA 62.081 55.000 0.00 0.00 0.00 4.57
3378 4127 1.470996 ATTGGCGGTGGTTTGTGCAT 61.471 50.000 0.00 0.00 0.00 3.96
3379 4128 2.049248 GGCGGTGGTTTGTGCATG 60.049 61.111 0.00 0.00 0.00 4.06
3380 4129 2.727544 GCGGTGGTTTGTGCATGT 59.272 55.556 0.00 0.00 0.00 3.21
3381 4130 1.067250 GCGGTGGTTTGTGCATGTT 59.933 52.632 0.00 0.00 0.00 2.71
3382 4131 1.214373 GCGGTGGTTTGTGCATGTTG 61.214 55.000 0.00 0.00 0.00 3.33
3383 4132 0.597118 CGGTGGTTTGTGCATGTTGG 60.597 55.000 0.00 0.00 0.00 3.77
3384 4133 0.249826 GGTGGTTTGTGCATGTTGGG 60.250 55.000 0.00 0.00 0.00 4.12
3385 4134 0.879839 GTGGTTTGTGCATGTTGGGC 60.880 55.000 0.00 0.00 0.00 5.36
3386 4135 1.332889 TGGTTTGTGCATGTTGGGCA 61.333 50.000 0.00 0.00 39.32 5.36
3387 4136 0.035176 GGTTTGTGCATGTTGGGCAT 59.965 50.000 0.00 0.00 44.11 4.40
3388 4137 1.274728 GGTTTGTGCATGTTGGGCATA 59.725 47.619 0.00 0.00 44.11 3.14
3389 4138 2.093553 GGTTTGTGCATGTTGGGCATAT 60.094 45.455 0.00 0.00 44.11 1.78
3390 4139 2.931325 GTTTGTGCATGTTGGGCATATG 59.069 45.455 0.00 0.00 44.11 1.78
3391 4140 1.849977 TGTGCATGTTGGGCATATGT 58.150 45.000 4.29 0.00 44.11 2.29
3392 4141 3.010200 TGTGCATGTTGGGCATATGTA 57.990 42.857 4.29 0.00 44.11 2.29
3393 4142 3.359950 TGTGCATGTTGGGCATATGTAA 58.640 40.909 4.29 0.00 44.11 2.41
3394 4143 3.130164 TGTGCATGTTGGGCATATGTAAC 59.870 43.478 4.29 8.31 44.11 2.50
3395 4144 2.692557 TGCATGTTGGGCATATGTAACC 59.307 45.455 4.29 5.52 36.11 2.85
3396 4145 2.692557 GCATGTTGGGCATATGTAACCA 59.307 45.455 4.29 8.06 35.74 3.67
3397 4146 3.490761 GCATGTTGGGCATATGTAACCAC 60.491 47.826 13.24 10.15 35.74 4.16
3398 4147 3.730215 TGTTGGGCATATGTAACCACT 57.270 42.857 13.24 0.00 31.65 4.00
3399 4148 3.351740 TGTTGGGCATATGTAACCACTG 58.648 45.455 13.24 0.00 31.65 3.66
3400 4149 3.245087 TGTTGGGCATATGTAACCACTGT 60.245 43.478 13.24 0.00 31.65 3.55
3401 4150 2.997980 TGGGCATATGTAACCACTGTG 58.002 47.619 4.29 0.00 0.00 3.66
3402 4151 2.307392 TGGGCATATGTAACCACTGTGT 59.693 45.455 7.08 0.00 0.00 3.72
3403 4152 3.245087 TGGGCATATGTAACCACTGTGTT 60.245 43.478 7.08 4.24 0.00 3.32
3404 4153 3.377172 GGGCATATGTAACCACTGTGTTC 59.623 47.826 7.08 0.00 0.00 3.18
3405 4154 4.261801 GGCATATGTAACCACTGTGTTCT 58.738 43.478 7.08 0.00 0.00 3.01
3406 4155 5.424757 GGCATATGTAACCACTGTGTTCTA 58.575 41.667 7.08 0.00 0.00 2.10
3407 4156 5.293569 GGCATATGTAACCACTGTGTTCTAC 59.706 44.000 7.08 5.78 0.00 2.59
3408 4157 6.106673 GCATATGTAACCACTGTGTTCTACT 58.893 40.000 7.08 0.00 0.00 2.57
3409 4158 7.262772 GCATATGTAACCACTGTGTTCTACTA 58.737 38.462 7.08 1.70 0.00 1.82
3410 4159 7.926555 GCATATGTAACCACTGTGTTCTACTAT 59.073 37.037 7.08 4.91 0.00 2.12
3411 4160 9.817809 CATATGTAACCACTGTGTTCTACTATT 57.182 33.333 7.08 0.00 0.00 1.73
3413 4162 7.956420 TGTAACCACTGTGTTCTACTATTTG 57.044 36.000 7.08 0.00 0.00 2.32
3414 4163 7.502696 TGTAACCACTGTGTTCTACTATTTGT 58.497 34.615 7.08 0.00 0.00 2.83
3415 4164 7.988599 TGTAACCACTGTGTTCTACTATTTGTT 59.011 33.333 7.08 2.06 0.00 2.83
3416 4165 7.875327 AACCACTGTGTTCTACTATTTGTTT 57.125 32.000 7.08 0.00 0.00 2.83
3417 4166 8.967664 AACCACTGTGTTCTACTATTTGTTTA 57.032 30.769 7.08 0.00 0.00 2.01
3418 4167 9.569122 AACCACTGTGTTCTACTATTTGTTTAT 57.431 29.630 7.08 0.00 0.00 1.40
3419 4168 9.569122 ACCACTGTGTTCTACTATTTGTTTATT 57.431 29.630 7.08 0.00 0.00 1.40
3462 4211 7.659186 AGACTAGACAACAAACTAGTAAGTGG 58.341 38.462 0.00 0.00 45.89 4.00
3463 4212 7.287235 AGACTAGACAACAAACTAGTAAGTGGT 59.713 37.037 7.23 7.23 45.89 4.16
3464 4213 7.208080 ACTAGACAACAAACTAGTAAGTGGTG 58.792 38.462 14.48 14.48 44.66 4.17
3465 4214 5.365619 AGACAACAAACTAGTAAGTGGTGG 58.634 41.667 18.33 0.02 35.62 4.61
3466 4215 4.457466 ACAACAAACTAGTAAGTGGTGGG 58.543 43.478 18.33 1.42 35.62 4.61
3467 4216 4.080186 ACAACAAACTAGTAAGTGGTGGGT 60.080 41.667 18.33 1.96 35.62 4.51
3468 4217 4.081322 ACAAACTAGTAAGTGGTGGGTG 57.919 45.455 0.00 0.00 35.62 4.61
3469 4218 3.181448 ACAAACTAGTAAGTGGTGGGTGG 60.181 47.826 0.00 0.00 35.62 4.61
3470 4219 2.410790 ACTAGTAAGTGGTGGGTGGT 57.589 50.000 0.00 0.00 33.57 4.16
3471 4220 1.975680 ACTAGTAAGTGGTGGGTGGTG 59.024 52.381 0.00 0.00 33.57 4.17
3472 4221 0.688487 TAGTAAGTGGTGGGTGGTGC 59.312 55.000 0.00 0.00 0.00 5.01
3473 4222 1.060163 AGTAAGTGGTGGGTGGTGCT 61.060 55.000 0.00 0.00 0.00 4.40
3474 4223 0.688487 GTAAGTGGTGGGTGGTGCTA 59.312 55.000 0.00 0.00 0.00 3.49
3475 4224 1.280998 GTAAGTGGTGGGTGGTGCTAT 59.719 52.381 0.00 0.00 0.00 2.97
3476 4225 0.777446 AAGTGGTGGGTGGTGCTATT 59.223 50.000 0.00 0.00 0.00 1.73
3477 4226 1.663911 AGTGGTGGGTGGTGCTATTA 58.336 50.000 0.00 0.00 0.00 0.98
3478 4227 1.989586 AGTGGTGGGTGGTGCTATTAA 59.010 47.619 0.00 0.00 0.00 1.40
3479 4228 2.377193 AGTGGTGGGTGGTGCTATTAAA 59.623 45.455 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.740290 AGCACTAGTGTAGAAAAGCCTAA 57.260 39.130 23.44 0.00 0.00 2.69
63 65 7.808279 TCTAAACTCTTCCATCCCTAAAGAA 57.192 36.000 0.00 0.00 0.00 2.52
96 98 5.829924 ACAAATTCTCACATCACAAACCTCT 59.170 36.000 0.00 0.00 0.00 3.69
124 126 5.581479 ACGATTTACCGTACAATGCACAATA 59.419 36.000 0.00 0.00 41.44 1.90
253 257 4.965762 CACGATTTGCAGTGCATAATACTG 59.034 41.667 20.50 14.94 46.37 2.74
254 258 4.875536 TCACGATTTGCAGTGCATAATACT 59.124 37.500 20.50 0.00 38.76 2.12
325 335 8.948853 TTGTTCTAAAATCTTTCATGCTTACG 57.051 30.769 0.00 0.00 0.00 3.18
414 426 7.609918 ACAACAAATTCTGCCACATGTAGTATA 59.390 33.333 0.00 0.00 0.00 1.47
418 430 5.125100 ACAACAAATTCTGCCACATGTAG 57.875 39.130 0.00 0.00 0.00 2.74
448 460 5.984725 ACACTATTGACCGTTGGATATCAA 58.015 37.500 4.83 0.00 35.64 2.57
473 485 6.183360 TGCCAATGCAAATATAGCAGATTTGA 60.183 34.615 17.31 7.11 46.66 2.69
493 505 1.097232 CGATGAAGCCAATCTGCCAA 58.903 50.000 0.00 0.00 0.00 4.52
536 549 5.215252 ACATCACCATGTAGCCTATGTAC 57.785 43.478 0.00 0.00 41.81 2.90
537 550 6.987403 TTACATCACCATGTAGCCTATGTA 57.013 37.500 0.00 0.00 44.64 2.29
538 551 5.887214 TTACATCACCATGTAGCCTATGT 57.113 39.130 0.00 0.00 44.64 2.29
579 592 9.567776 TGTTACTATCCAATTCAGACTTTTTCA 57.432 29.630 0.00 0.00 0.00 2.69
627 643 5.755375 CGCTGTTCACTGATTATGATTACCT 59.245 40.000 0.00 0.00 0.00 3.08
652 668 5.849604 GCGGTAACTAAAGTTGTCATCAAAC 59.150 40.000 5.62 0.00 38.90 2.93
660 676 2.137523 CCACGCGGTAACTAAAGTTGT 58.862 47.619 12.47 0.00 38.90 3.32
673 689 2.011741 TAGTACTGGCATCCACGCGG 62.012 60.000 12.47 0.00 0.00 6.46
695 711 8.715088 GCAGCTCTGTTTTTCATCAAAATTTAT 58.285 29.630 0.00 0.00 36.72 1.40
696 712 7.710044 TGCAGCTCTGTTTTTCATCAAAATTTA 59.290 29.630 0.00 0.00 36.72 1.40
717 733 3.730761 CGGCAACTCCACTGCAGC 61.731 66.667 15.27 0.00 41.78 5.25
718 734 2.281070 ACGGCAACTCCACTGCAG 60.281 61.111 13.48 13.48 41.78 4.41
796 812 5.479375 TCAAAGAATTCTACAGTACCGAGGT 59.521 40.000 8.75 0.00 0.00 3.85
806 916 1.730064 GCGCCGTCAAAGAATTCTACA 59.270 47.619 8.75 0.00 0.00 2.74
819 929 2.103736 GTACTACCAGGCGCCGTC 59.896 66.667 23.20 0.00 0.00 4.79
833 943 1.734117 CCGTTCCGTTCCGTGGTAC 60.734 63.158 0.00 0.00 0.00 3.34
834 944 1.459455 TTCCGTTCCGTTCCGTGGTA 61.459 55.000 0.00 0.00 0.00 3.25
835 945 2.795110 TTCCGTTCCGTTCCGTGGT 61.795 57.895 0.00 0.00 0.00 4.16
836 946 2.029369 TTCCGTTCCGTTCCGTGG 59.971 61.111 0.00 0.00 0.00 4.94
837 947 2.651137 CGTTCCGTTCCGTTCCGTG 61.651 63.158 0.00 0.00 0.00 4.94
838 948 2.355009 CGTTCCGTTCCGTTCCGT 60.355 61.111 0.00 0.00 0.00 4.69
839 949 2.824071 ATCCGTTCCGTTCCGTTCCG 62.824 60.000 0.00 0.00 0.00 4.30
840 950 0.173255 TATCCGTTCCGTTCCGTTCC 59.827 55.000 0.00 0.00 0.00 3.62
841 951 1.271876 GTATCCGTTCCGTTCCGTTC 58.728 55.000 0.00 0.00 0.00 3.95
842 952 0.456653 CGTATCCGTTCCGTTCCGTT 60.457 55.000 0.00 0.00 0.00 4.44
843 953 1.137404 CGTATCCGTTCCGTTCCGT 59.863 57.895 0.00 0.00 0.00 4.69
844 954 2.226225 GCGTATCCGTTCCGTTCCG 61.226 63.158 0.00 0.00 36.15 4.30
889 999 2.819595 CTGCTGCGGCCGTAATGT 60.820 61.111 28.70 0.00 37.74 2.71
890 1000 4.241999 GCTGCTGCGGCCGTAATG 62.242 66.667 28.70 12.92 37.74 1.90
941 1051 0.460311 GGGATGGAGTACGACCACAG 59.540 60.000 15.01 0.00 40.36 3.66
964 1074 4.103311 GTGCTCAACTTTATAGAGGGGGAT 59.897 45.833 0.00 0.00 0.00 3.85
968 1078 3.458189 CGGTGCTCAACTTTATAGAGGG 58.542 50.000 0.00 0.00 0.00 4.30
978 1088 2.037136 GCAGATGCGGTGCTCAACT 61.037 57.895 0.00 0.00 37.96 3.16
1010 1120 3.393970 CTCTGAGGGCGCTGGGAA 61.394 66.667 8.56 0.00 0.00 3.97
1019 1129 1.896694 GAGTCTGTGGCTCTGAGGG 59.103 63.158 6.83 0.00 0.00 4.30
1023 1138 1.153862 GCTCGAGTCTGTGGCTCTG 60.154 63.158 15.13 0.00 0.00 3.35
1055 1170 2.335712 CGCTTCTTGGTTGGGGAGC 61.336 63.158 0.00 0.00 0.00 4.70
1056 1171 0.674895 CTCGCTTCTTGGTTGGGGAG 60.675 60.000 0.00 0.00 33.74 4.30
1393 1643 1.458639 GCCTGCTTGCCAGACTTGTT 61.459 55.000 0.00 0.00 44.64 2.83
1548 1855 1.294780 CTGCTCCGGCTTCTTGTCT 59.705 57.895 0.00 0.00 39.59 3.41
1590 1897 3.844090 GAGGCCGTCTCCTGCTCC 61.844 72.222 0.00 0.00 36.38 4.70
1591 1898 4.200283 CGAGGCCGTCTCCTGCTC 62.200 72.222 0.00 0.00 39.30 4.26
1594 1901 3.522731 CTCCGAGGCCGTCTCCTG 61.523 72.222 0.00 0.00 39.30 3.86
1595 1902 3.283812 TTCTCCGAGGCCGTCTCCT 62.284 63.158 0.00 0.00 39.30 3.69
1596 1903 2.754658 TTCTCCGAGGCCGTCTCC 60.755 66.667 0.00 0.00 39.30 3.71
1597 1904 1.313812 TTCTTCTCCGAGGCCGTCTC 61.314 60.000 0.00 0.00 39.10 3.36
1598 1905 1.304217 TTCTTCTCCGAGGCCGTCT 60.304 57.895 0.00 0.00 0.00 4.18
1599 1906 1.139947 CTTCTTCTCCGAGGCCGTC 59.860 63.158 0.00 0.00 0.00 4.79
1600 1907 3.007973 GCTTCTTCTCCGAGGCCGT 62.008 63.158 0.00 0.00 30.59 5.68
1604 1911 0.459489 CTCAGGCTTCTTCTCCGAGG 59.541 60.000 0.00 0.00 0.00 4.63
1606 1913 1.178276 GTCTCAGGCTTCTTCTCCGA 58.822 55.000 0.00 0.00 0.00 4.55
1723 2039 0.108396 CCCTTTGCTTTGGGTTTGGG 59.892 55.000 0.00 0.00 38.65 4.12
1724 2040 0.534877 GCCCTTTGCTTTGGGTTTGG 60.535 55.000 9.54 0.00 45.06 3.28
1725 2041 0.179936 TGCCCTTTGCTTTGGGTTTG 59.820 50.000 9.54 0.00 45.06 2.93
1726 2042 0.180171 GTGCCCTTTGCTTTGGGTTT 59.820 50.000 9.54 0.00 45.06 3.27
1727 2043 1.695114 GGTGCCCTTTGCTTTGGGTT 61.695 55.000 9.54 0.00 45.06 4.11
1728 2044 2.140138 GGTGCCCTTTGCTTTGGGT 61.140 57.895 9.54 0.00 45.06 4.51
2217 2593 1.246056 TGGGGTTCTCGTCGTCGAAT 61.246 55.000 6.19 0.00 45.61 3.34
2292 2668 2.100879 GATTATGAGGACGGCCGCCT 62.101 60.000 32.37 32.37 39.96 5.52
2293 2669 1.668151 GATTATGAGGACGGCCGCC 60.668 63.158 28.58 26.64 39.96 6.13
2294 2670 2.022129 CGATTATGAGGACGGCCGC 61.022 63.158 28.58 18.35 39.96 6.53
2295 2671 0.594602 TACGATTATGAGGACGGCCG 59.405 55.000 26.86 26.86 39.96 6.13
2296 2672 2.806608 TTACGATTATGAGGACGGCC 57.193 50.000 0.00 0.00 0.00 6.13
2298 2677 6.544622 GTCTCTATTACGATTATGAGGACGG 58.455 44.000 0.00 0.00 0.00 4.79
2301 2680 6.370994 GTCCGTCTCTATTACGATTATGAGGA 59.629 42.308 0.00 0.00 42.90 3.71
2492 2904 7.385267 GTGGAAGATCTCATTGATGCTACTAT 58.615 38.462 0.00 0.00 35.14 2.12
2587 3006 9.877178 AAGATTCTTTAGCTGTATATAATCCGG 57.123 33.333 0.00 0.00 0.00 5.14
2650 3147 4.430007 CATGATTGGATTGGAGCACAAAG 58.570 43.478 0.00 0.00 43.46 2.77
2684 3185 5.827797 GGCCACAAGAATCAACAAGGATATA 59.172 40.000 0.00 0.00 0.00 0.86
2735 3420 3.449322 TGATGACTCGCGTTTTTAAGC 57.551 42.857 5.77 0.00 0.00 3.09
2736 3421 3.833061 CGTTGATGACTCGCGTTTTTAAG 59.167 43.478 5.77 0.00 0.00 1.85
2737 3422 3.490155 TCGTTGATGACTCGCGTTTTTAA 59.510 39.130 5.77 0.00 0.00 1.52
2738 3423 3.051327 TCGTTGATGACTCGCGTTTTTA 58.949 40.909 5.77 0.00 0.00 1.52
2739 3424 1.862201 TCGTTGATGACTCGCGTTTTT 59.138 42.857 5.77 0.00 0.00 1.94
2740 3425 1.493772 TCGTTGATGACTCGCGTTTT 58.506 45.000 5.77 0.00 0.00 2.43
2741 3426 1.493772 TTCGTTGATGACTCGCGTTT 58.506 45.000 5.77 0.00 0.00 3.60
2742 3427 1.455786 CTTTCGTTGATGACTCGCGTT 59.544 47.619 5.77 0.00 0.00 4.84
2743 3428 1.060713 CTTTCGTTGATGACTCGCGT 58.939 50.000 5.77 0.00 0.00 6.01
2744 3429 1.057847 GTCTTTCGTTGATGACTCGCG 59.942 52.381 0.00 0.00 0.00 5.87
2745 3430 2.329379 AGTCTTTCGTTGATGACTCGC 58.671 47.619 0.00 0.00 35.13 5.03
2746 3431 4.444388 TCAAAGTCTTTCGTTGATGACTCG 59.556 41.667 0.00 0.00 39.00 4.18
2747 3432 5.234329 TGTCAAAGTCTTTCGTTGATGACTC 59.766 40.000 10.93 0.00 43.73 3.36
2748 3433 5.116180 TGTCAAAGTCTTTCGTTGATGACT 58.884 37.500 10.93 0.00 43.73 3.41
2749 3434 5.234329 TCTGTCAAAGTCTTTCGTTGATGAC 59.766 40.000 0.00 0.00 43.73 3.06
2750 3435 5.356426 TCTGTCAAAGTCTTTCGTTGATGA 58.644 37.500 0.00 0.00 43.73 2.92
2751 3436 5.657470 TCTGTCAAAGTCTTTCGTTGATG 57.343 39.130 0.00 0.00 43.73 3.07
2752 3437 5.237344 CCTTCTGTCAAAGTCTTTCGTTGAT 59.763 40.000 0.00 0.00 43.73 2.57
2753 3438 4.570772 CCTTCTGTCAAAGTCTTTCGTTGA 59.429 41.667 0.00 0.00 40.90 3.18
2754 3439 4.332819 ACCTTCTGTCAAAGTCTTTCGTTG 59.667 41.667 0.00 0.00 36.98 4.10
2755 3440 4.514401 ACCTTCTGTCAAAGTCTTTCGTT 58.486 39.130 0.00 0.00 0.00 3.85
2756 3441 4.138487 ACCTTCTGTCAAAGTCTTTCGT 57.862 40.909 0.00 0.00 0.00 3.85
2757 3442 6.598753 TTTACCTTCTGTCAAAGTCTTTCG 57.401 37.500 0.00 0.00 0.00 3.46
2778 3463 8.190784 CGGGAGAGCAGTCATTTATTTATTTTT 58.809 33.333 0.00 0.00 0.00 1.94
2779 3464 7.201821 CCGGGAGAGCAGTCATTTATTTATTTT 60.202 37.037 0.00 0.00 0.00 1.82
2780 3465 6.263168 CCGGGAGAGCAGTCATTTATTTATTT 59.737 38.462 0.00 0.00 0.00 1.40
2781 3466 5.765182 CCGGGAGAGCAGTCATTTATTTATT 59.235 40.000 0.00 0.00 0.00 1.40
2782 3467 5.163195 ACCGGGAGAGCAGTCATTTATTTAT 60.163 40.000 6.32 0.00 0.00 1.40
2783 3468 4.163458 ACCGGGAGAGCAGTCATTTATTTA 59.837 41.667 6.32 0.00 0.00 1.40
2784 3469 3.054361 ACCGGGAGAGCAGTCATTTATTT 60.054 43.478 6.32 0.00 0.00 1.40
2785 3470 2.505819 ACCGGGAGAGCAGTCATTTATT 59.494 45.455 6.32 0.00 0.00 1.40
2786 3471 2.119495 ACCGGGAGAGCAGTCATTTAT 58.881 47.619 6.32 0.00 0.00 1.40
2787 3472 1.207089 CACCGGGAGAGCAGTCATTTA 59.793 52.381 6.32 0.00 0.00 1.40
2788 3473 0.036010 CACCGGGAGAGCAGTCATTT 60.036 55.000 6.32 0.00 0.00 2.32
2789 3474 1.194781 ACACCGGGAGAGCAGTCATT 61.195 55.000 6.32 0.00 0.00 2.57
2790 3475 1.610673 ACACCGGGAGAGCAGTCAT 60.611 57.895 6.32 0.00 0.00 3.06
2791 3476 2.203640 ACACCGGGAGAGCAGTCA 60.204 61.111 6.32 0.00 0.00 3.41
2792 3477 1.608717 ATCACACCGGGAGAGCAGTC 61.609 60.000 6.32 0.00 0.00 3.51
2793 3478 1.194781 AATCACACCGGGAGAGCAGT 61.195 55.000 6.32 0.00 0.00 4.40
2794 3479 0.742281 CAATCACACCGGGAGAGCAG 60.742 60.000 6.32 0.00 0.00 4.24
2795 3480 1.191489 TCAATCACACCGGGAGAGCA 61.191 55.000 6.32 0.00 0.00 4.26
2796 3481 0.179000 ATCAATCACACCGGGAGAGC 59.821 55.000 6.32 0.00 0.00 4.09
2797 3482 3.493350 CCTTATCAATCACACCGGGAGAG 60.493 52.174 6.32 0.00 0.00 3.20
2798 3483 2.434336 CCTTATCAATCACACCGGGAGA 59.566 50.000 6.32 0.00 0.00 3.71
2799 3484 2.838736 CCTTATCAATCACACCGGGAG 58.161 52.381 6.32 0.00 0.00 4.30
2800 3485 1.134220 GCCTTATCAATCACACCGGGA 60.134 52.381 6.32 0.00 0.00 5.14
2801 3486 1.308998 GCCTTATCAATCACACCGGG 58.691 55.000 6.32 0.00 0.00 5.73
2802 3487 1.308998 GGCCTTATCAATCACACCGG 58.691 55.000 0.00 0.00 0.00 5.28
2803 3488 1.308998 GGGCCTTATCAATCACACCG 58.691 55.000 0.84 0.00 0.00 4.94
2804 3489 1.692411 GGGGCCTTATCAATCACACC 58.308 55.000 0.84 0.00 0.00 4.16
2805 3490 1.308998 CGGGGCCTTATCAATCACAC 58.691 55.000 0.84 0.00 0.00 3.82
2806 3491 0.916086 ACGGGGCCTTATCAATCACA 59.084 50.000 0.84 0.00 0.00 3.58
2807 3492 1.134220 TGACGGGGCCTTATCAATCAC 60.134 52.381 0.84 0.00 0.00 3.06
2808 3493 1.134220 GTGACGGGGCCTTATCAATCA 60.134 52.381 0.84 0.00 0.00 2.57
2812 3497 1.306654 AGGTGACGGGGCCTTATCA 60.307 57.895 0.84 1.78 0.00 2.15
2823 3508 0.250295 TGGCAAAAGGAGAGGTGACG 60.250 55.000 0.00 0.00 0.00 4.35
2824 3509 1.239347 GTGGCAAAAGGAGAGGTGAC 58.761 55.000 0.00 0.00 0.00 3.67
2857 3543 3.486375 CGAGTGTCACGTGGTATTATCGT 60.486 47.826 17.00 0.00 38.34 3.73
2858 3544 3.033873 CGAGTGTCACGTGGTATTATCG 58.966 50.000 17.00 13.85 0.00 2.92
2859 3545 4.025015 ACGAGTGTCACGTGGTATTATC 57.975 45.455 17.00 6.08 42.37 1.75
2868 3554 0.318445 GCTTACCACGAGTGTCACGT 60.318 55.000 2.36 0.00 44.83 4.49
2869 3555 0.318360 TGCTTACCACGAGTGTCACG 60.318 55.000 2.36 0.00 0.00 4.35
2870 3556 1.860676 TTGCTTACCACGAGTGTCAC 58.139 50.000 2.36 0.00 0.00 3.67
2871 3557 2.611971 GGATTGCTTACCACGAGTGTCA 60.612 50.000 2.36 0.00 0.00 3.58
2872 3558 2.000447 GGATTGCTTACCACGAGTGTC 59.000 52.381 2.36 0.00 0.00 3.67
2873 3559 1.346395 TGGATTGCTTACCACGAGTGT 59.654 47.619 2.36 0.00 0.00 3.55
2874 3560 2.093306 TGGATTGCTTACCACGAGTG 57.907 50.000 0.00 0.00 0.00 3.51
2875 3561 2.812011 GTTTGGATTGCTTACCACGAGT 59.188 45.455 0.00 0.00 35.81 4.18
2876 3562 3.074412 AGTTTGGATTGCTTACCACGAG 58.926 45.455 0.00 0.00 35.81 4.18
2877 3563 3.134574 AGTTTGGATTGCTTACCACGA 57.865 42.857 0.00 0.00 35.81 4.35
2878 3564 3.252215 TCAAGTTTGGATTGCTTACCACG 59.748 43.478 0.00 0.00 35.81 4.94
2879 3565 4.846779 TCAAGTTTGGATTGCTTACCAC 57.153 40.909 0.00 0.00 35.81 4.16
2880 3566 5.076182 TCATCAAGTTTGGATTGCTTACCA 58.924 37.500 0.00 0.00 0.00 3.25
2881 3567 5.643379 TCATCAAGTTTGGATTGCTTACC 57.357 39.130 0.00 0.00 0.00 2.85
2882 3568 7.945033 TTTTCATCAAGTTTGGATTGCTTAC 57.055 32.000 0.00 0.00 0.00 2.34
2905 3591 8.730680 ACATCATTATCGTGCTAACTTCTTTTT 58.269 29.630 0.00 0.00 0.00 1.94
2906 3592 8.268850 ACATCATTATCGTGCTAACTTCTTTT 57.731 30.769 0.00 0.00 0.00 2.27
2907 3593 7.849804 ACATCATTATCGTGCTAACTTCTTT 57.150 32.000 0.00 0.00 0.00 2.52
2908 3594 7.849804 AACATCATTATCGTGCTAACTTCTT 57.150 32.000 0.00 0.00 0.00 2.52
2909 3595 7.849804 AAACATCATTATCGTGCTAACTTCT 57.150 32.000 0.00 0.00 0.00 2.85
2912 3598 9.325198 TGATTAAACATCATTATCGTGCTAACT 57.675 29.630 0.00 0.00 0.00 2.24
2913 3599 9.586150 CTGATTAAACATCATTATCGTGCTAAC 57.414 33.333 0.00 0.00 0.00 2.34
2942 3632 1.144716 TTGGGCTGCTGAGCTATCG 59.855 57.895 5.83 0.00 45.44 2.92
2971 3661 4.039092 CCTCACCCCAGGCACCAG 62.039 72.222 0.00 0.00 0.00 4.00
2978 3668 3.655211 AGCTTGGCCTCACCCCAG 61.655 66.667 3.32 0.00 37.83 4.45
3012 3702 4.997905 GCGATGAGCTATATGAAAAGCA 57.002 40.909 0.00 0.00 44.04 3.91
3037 3727 1.040339 AGCCTTCAAACAAACCGGCA 61.040 50.000 0.00 0.00 39.91 5.69
3078 3791 0.034337 TAACACGAGGGACAAGCACC 59.966 55.000 0.00 0.00 0.00 5.01
3086 3799 3.680490 TGCAAATCATTAACACGAGGGA 58.320 40.909 0.00 0.00 0.00 4.20
3090 3803 4.155644 TCAGCATGCAAATCATTAACACGA 59.844 37.500 21.98 0.00 34.76 4.35
3092 3805 6.270815 AGATCAGCATGCAAATCATTAACAC 58.729 36.000 25.25 5.58 34.76 3.32
3194 3933 4.262420 GCAACCCACAATAATCAAACCAGT 60.262 41.667 0.00 0.00 0.00 4.00
3202 3941 1.756538 CCCCAGCAACCCACAATAATC 59.243 52.381 0.00 0.00 0.00 1.75
3218 3957 5.043732 ACCACTTTTCCATTATCATACCCCA 60.044 40.000 0.00 0.00 0.00 4.96
3225 3964 3.096092 GGCCACCACTTTTCCATTATCA 58.904 45.455 0.00 0.00 0.00 2.15
3226 3965 3.096092 TGGCCACCACTTTTCCATTATC 58.904 45.455 0.00 0.00 0.00 1.75
3245 3993 3.559238 ACTAAGCAAAGCACGATTTGG 57.441 42.857 9.57 0.00 39.94 3.28
3313 4061 0.398239 CCCTGCCCTCATCTCTCTGA 60.398 60.000 0.00 0.00 0.00 3.27
3314 4062 2.042404 GCCCTGCCCTCATCTCTCTG 62.042 65.000 0.00 0.00 0.00 3.35
3351 4100 3.197790 CACCGCCAATCGAGCCAG 61.198 66.667 0.00 0.00 41.67 4.85
3352 4101 4.776322 CCACCGCCAATCGAGCCA 62.776 66.667 0.00 0.00 41.67 4.75
3353 4102 4.778143 ACCACCGCCAATCGAGCC 62.778 66.667 0.00 0.00 41.67 4.70
3354 4103 2.332654 AAACCACCGCCAATCGAGC 61.333 57.895 0.00 0.00 41.67 5.03
3355 4104 1.234615 ACAAACCACCGCCAATCGAG 61.235 55.000 0.00 0.00 41.67 4.04
3356 4105 1.228003 ACAAACCACCGCCAATCGA 60.228 52.632 0.00 0.00 41.67 3.59
3357 4106 1.081509 CACAAACCACCGCCAATCG 60.082 57.895 0.00 0.00 38.08 3.34
3358 4107 1.372872 GCACAAACCACCGCCAATC 60.373 57.895 0.00 0.00 0.00 2.67
3359 4108 1.470996 ATGCACAAACCACCGCCAAT 61.471 50.000 0.00 0.00 0.00 3.16
3360 4109 2.130426 ATGCACAAACCACCGCCAA 61.130 52.632 0.00 0.00 0.00 4.52
3361 4110 2.520500 ATGCACAAACCACCGCCA 60.521 55.556 0.00 0.00 0.00 5.69
3362 4111 2.049248 CATGCACAAACCACCGCC 60.049 61.111 0.00 0.00 0.00 6.13
3363 4112 1.067250 AACATGCACAAACCACCGC 59.933 52.632 0.00 0.00 0.00 5.68
3364 4113 0.597118 CCAACATGCACAAACCACCG 60.597 55.000 0.00 0.00 0.00 4.94
3365 4114 0.249826 CCCAACATGCACAAACCACC 60.250 55.000 0.00 0.00 0.00 4.61
3366 4115 0.879839 GCCCAACATGCACAAACCAC 60.880 55.000 0.00 0.00 0.00 4.16
3367 4116 1.332889 TGCCCAACATGCACAAACCA 61.333 50.000 0.00 0.00 32.85 3.67
3368 4117 0.035176 ATGCCCAACATGCACAAACC 59.965 50.000 0.00 0.00 42.38 3.27
3369 4118 2.739885 TATGCCCAACATGCACAAAC 57.260 45.000 0.00 0.00 42.38 2.93
3370 4119 2.566279 ACATATGCCCAACATGCACAAA 59.434 40.909 1.58 0.00 42.38 2.83
3371 4120 2.177734 ACATATGCCCAACATGCACAA 58.822 42.857 1.58 0.00 42.38 3.33
3372 4121 1.849977 ACATATGCCCAACATGCACA 58.150 45.000 1.58 0.00 42.38 4.57
3373 4122 3.490761 GGTTACATATGCCCAACATGCAC 60.491 47.826 1.58 0.00 42.38 4.57
3374 4123 2.692557 GGTTACATATGCCCAACATGCA 59.307 45.455 1.58 0.00 43.97 3.96
3375 4124 2.692557 TGGTTACATATGCCCAACATGC 59.307 45.455 1.58 0.00 40.06 4.06
3376 4125 3.953612 AGTGGTTACATATGCCCAACATG 59.046 43.478 1.58 0.00 40.06 3.21
3377 4126 3.953612 CAGTGGTTACATATGCCCAACAT 59.046 43.478 1.58 0.00 43.18 2.71
3378 4127 3.245087 ACAGTGGTTACATATGCCCAACA 60.245 43.478 1.58 0.00 0.00 3.33
3379 4128 3.128589 CACAGTGGTTACATATGCCCAAC 59.871 47.826 1.58 4.89 0.00 3.77
3380 4129 3.245087 ACACAGTGGTTACATATGCCCAA 60.245 43.478 5.31 0.00 0.00 4.12
3381 4130 2.307392 ACACAGTGGTTACATATGCCCA 59.693 45.455 5.31 3.94 0.00 5.36
3382 4131 2.999331 ACACAGTGGTTACATATGCCC 58.001 47.619 5.31 1.11 0.00 5.36
3383 4132 4.261801 AGAACACAGTGGTTACATATGCC 58.738 43.478 5.31 0.00 0.00 4.40
3384 4133 6.106673 AGTAGAACACAGTGGTTACATATGC 58.893 40.000 5.31 0.00 0.00 3.14
3385 4134 9.817809 AATAGTAGAACACAGTGGTTACATATG 57.182 33.333 5.31 0.00 0.00 1.78
3387 4136 9.647797 CAAATAGTAGAACACAGTGGTTACATA 57.352 33.333 5.31 0.00 0.00 2.29
3388 4137 8.154856 ACAAATAGTAGAACACAGTGGTTACAT 58.845 33.333 5.31 0.00 0.00 2.29
3389 4138 7.502696 ACAAATAGTAGAACACAGTGGTTACA 58.497 34.615 5.31 0.00 0.00 2.41
3390 4139 7.958053 ACAAATAGTAGAACACAGTGGTTAC 57.042 36.000 5.31 4.41 0.00 2.50
3391 4140 8.967664 AAACAAATAGTAGAACACAGTGGTTA 57.032 30.769 5.31 0.00 0.00 2.85
3392 4141 7.875327 AAACAAATAGTAGAACACAGTGGTT 57.125 32.000 5.31 0.00 0.00 3.67
3393 4142 9.569122 AATAAACAAATAGTAGAACACAGTGGT 57.431 29.630 5.31 0.00 0.00 4.16
3436 4185 8.790718 CCACTTACTAGTTTGTTGTCTAGTCTA 58.209 37.037 0.00 0.00 43.57 2.59
3437 4186 7.287235 ACCACTTACTAGTTTGTTGTCTAGTCT 59.713 37.037 0.00 0.00 43.57 3.24
3438 4187 7.381678 CACCACTTACTAGTTTGTTGTCTAGTC 59.618 40.741 0.00 0.00 43.57 2.59
3439 4188 7.208080 CACCACTTACTAGTTTGTTGTCTAGT 58.792 38.462 0.00 9.29 45.57 2.57
3440 4189 6.645415 CCACCACTTACTAGTTTGTTGTCTAG 59.355 42.308 0.00 0.00 39.37 2.43
3441 4190 6.463331 CCCACCACTTACTAGTTTGTTGTCTA 60.463 42.308 0.00 0.00 30.26 2.59
3442 4191 5.365619 CCACCACTTACTAGTTTGTTGTCT 58.634 41.667 0.00 0.00 30.26 3.41
3443 4192 4.514066 CCCACCACTTACTAGTTTGTTGTC 59.486 45.833 0.00 0.00 30.26 3.18
3444 4193 4.080186 ACCCACCACTTACTAGTTTGTTGT 60.080 41.667 0.00 0.00 30.26 3.32
3445 4194 4.274950 CACCCACCACTTACTAGTTTGTTG 59.725 45.833 0.00 0.00 30.26 3.33
3446 4195 4.457466 CACCCACCACTTACTAGTTTGTT 58.543 43.478 0.00 0.00 30.26 2.83
3447 4196 3.181448 CCACCCACCACTTACTAGTTTGT 60.181 47.826 0.00 0.00 30.26 2.83
3448 4197 3.181448 ACCACCCACCACTTACTAGTTTG 60.181 47.826 0.00 0.00 30.26 2.93
3449 4198 3.050835 ACCACCCACCACTTACTAGTTT 58.949 45.455 0.00 0.00 30.26 2.66
3450 4199 2.370849 CACCACCCACCACTTACTAGTT 59.629 50.000 0.00 0.00 30.26 2.24
3451 4200 1.975680 CACCACCCACCACTTACTAGT 59.024 52.381 0.00 0.00 34.00 2.57
3452 4201 1.338769 GCACCACCCACCACTTACTAG 60.339 57.143 0.00 0.00 0.00 2.57
3453 4202 0.688487 GCACCACCCACCACTTACTA 59.312 55.000 0.00 0.00 0.00 1.82
3454 4203 1.060163 AGCACCACCCACCACTTACT 61.060 55.000 0.00 0.00 0.00 2.24
3455 4204 0.688487 TAGCACCACCCACCACTTAC 59.312 55.000 0.00 0.00 0.00 2.34
3456 4205 1.663911 ATAGCACCACCCACCACTTA 58.336 50.000 0.00 0.00 0.00 2.24
3457 4206 0.777446 AATAGCACCACCCACCACTT 59.223 50.000 0.00 0.00 0.00 3.16
3458 4207 1.663911 TAATAGCACCACCCACCACT 58.336 50.000 0.00 0.00 0.00 4.00
3459 4208 2.500392 TTAATAGCACCACCCACCAC 57.500 50.000 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.