Multiple sequence alignment - TraesCS5B01G028100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G028100 chr5B 100.000 3717 0 0 1 3717 27133472 27137188 0.000000e+00 6865
1 TraesCS5B01G028100 chr5B 89.713 1847 150 22 878 2718 26949905 26948093 0.000000e+00 2322
2 TraesCS5B01G028100 chr5B 88.137 1610 155 17 726 2313 50470828 50469233 0.000000e+00 1882
3 TraesCS5B01G028100 chr5B 92.248 387 30 0 2332 2718 50469131 50468745 1.950000e-152 549
4 TraesCS5B01G028100 chr5D 94.926 2562 89 17 464 3017 36177742 36180270 0.000000e+00 3973
5 TraesCS5B01G028100 chr5D 87.038 1705 169 22 630 2313 47334027 47332354 0.000000e+00 1877
6 TraesCS5B01G028100 chr5D 95.317 363 8 2 3355 3717 36201296 36201649 5.390000e-158 568
7 TraesCS5B01G028100 chr5D 91.731 387 32 0 2332 2718 47332252 47331866 4.220000e-149 538
8 TraesCS5B01G028100 chr5D 92.308 221 12 2 3017 3234 36180307 36180525 3.610000e-80 309
9 TraesCS5B01G028100 chr5D 90.533 169 9 4 3231 3395 36201131 36201296 2.250000e-52 217
10 TraesCS5B01G028100 chr5D 87.903 124 9 1 347 470 36177575 36177692 1.390000e-29 141
11 TraesCS5B01G028100 chr5A 88.686 1591 162 11 1211 2798 25118901 25120476 0.000000e+00 1925
12 TraesCS5B01G028100 chr5A 87.008 762 33 26 464 1215 25118019 25118724 0.000000e+00 798
13 TraesCS5B01G028100 chr5A 94.618 353 19 0 2366 2718 25071825 25072177 7.020000e-152 547
14 TraesCS5B01G028100 chr6D 77.049 1037 196 33 1343 2359 16247783 16246769 3.240000e-155 558
15 TraesCS5B01G028100 chr6D 76.011 1138 224 37 1184 2303 16234256 16235362 9.080000e-151 544
16 TraesCS5B01G028100 chr6A 75.730 1199 235 41 1184 2363 16468781 16469942 5.430000e-153 551
17 TraesCS5B01G028100 chr6B 83.471 121 18 2 49 168 682571549 682571668 1.090000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G028100 chr5B 27133472 27137188 3716 False 6865.000000 6865 100.000000 1 3717 1 chr5B.!!$F1 3716
1 TraesCS5B01G028100 chr5B 26948093 26949905 1812 True 2322.000000 2322 89.713000 878 2718 1 chr5B.!!$R1 1840
2 TraesCS5B01G028100 chr5B 50468745 50470828 2083 True 1215.500000 1882 90.192500 726 2718 2 chr5B.!!$R2 1992
3 TraesCS5B01G028100 chr5D 36177575 36180525 2950 False 1474.333333 3973 91.712333 347 3234 3 chr5D.!!$F1 2887
4 TraesCS5B01G028100 chr5D 47331866 47334027 2161 True 1207.500000 1877 89.384500 630 2718 2 chr5D.!!$R1 2088
5 TraesCS5B01G028100 chr5D 36201131 36201649 518 False 392.500000 568 92.925000 3231 3717 2 chr5D.!!$F2 486
6 TraesCS5B01G028100 chr5A 25118019 25120476 2457 False 1361.500000 1925 87.847000 464 2798 2 chr5A.!!$F2 2334
7 TraesCS5B01G028100 chr6D 16246769 16247783 1014 True 558.000000 558 77.049000 1343 2359 1 chr6D.!!$R1 1016
8 TraesCS5B01G028100 chr6D 16234256 16235362 1106 False 544.000000 544 76.011000 1184 2303 1 chr6D.!!$F1 1119
9 TraesCS5B01G028100 chr6A 16468781 16469942 1161 False 551.000000 551 75.730000 1184 2363 1 chr6A.!!$F1 1179

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 292 0.031721 CGGAGTAGGATGTAACCGGC 59.968 60.0 0.00 0.0 37.28 6.13 F
552 613 0.034337 TCCACTTTCGACCTTTCCGG 59.966 55.0 0.00 0.0 39.35 5.14 F
557 618 0.037046 TTTCGACCTTTCCGGCCTAC 60.037 55.0 0.00 0.0 35.61 3.18 F
627 695 0.178990 ACCTCCTGTCAGGGTTTTGC 60.179 55.0 19.11 0.0 37.96 3.68 F
631 699 0.895559 CCTGTCAGGGTTTTGCTCCC 60.896 60.0 11.46 0.0 44.90 4.30 F
718 789 1.049402 ATAAGTAAGAGGGAGCCGCC 58.951 55.0 0.00 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2324 1.108776 AATACCTCTAGCCGTTGCGA 58.891 50.000 0.00 0.0 44.33 5.10 R
2167 2467 2.363306 TGCCTGAGGTGACAAAACAT 57.637 45.000 0.00 0.0 0.00 2.71 R
2174 2474 3.503363 GCGCATGCCTGAGGTGAC 61.503 66.667 13.15 0.0 33.98 3.67 R
2620 3007 0.464452 CTAGGCTAGGGGTTGGTTCG 59.536 60.000 13.92 0.0 0.00 3.95 R
2635 3022 1.957177 TCAAGAGCGGCACTATCTAGG 59.043 52.381 1.45 0.0 0.00 3.02 R
2752 3139 8.904099 AATGTAAGATTTAATCTACTTCCGGG 57.096 34.615 7.98 0.0 39.08 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.963878 GGCAACCGTGGATGATCT 57.036 55.556 0.00 0.00 0.00 2.75
25 26 3.175133 GGCAACCGTGGATGATCTT 57.825 52.632 0.00 0.00 0.00 2.40
26 27 1.017387 GGCAACCGTGGATGATCTTC 58.983 55.000 0.00 0.00 0.00 2.87
27 28 1.678728 GGCAACCGTGGATGATCTTCA 60.679 52.381 10.48 0.00 0.00 3.02
28 29 1.398390 GCAACCGTGGATGATCTTCAC 59.602 52.381 10.48 7.14 0.00 3.18
29 30 2.009774 CAACCGTGGATGATCTTCACC 58.990 52.381 10.48 1.84 0.00 4.02
30 31 1.275666 ACCGTGGATGATCTTCACCA 58.724 50.000 10.48 4.23 0.00 4.17
31 32 1.839994 ACCGTGGATGATCTTCACCAT 59.160 47.619 10.48 0.00 32.87 3.55
32 33 3.038280 ACCGTGGATGATCTTCACCATA 58.962 45.455 10.48 0.00 32.87 2.74
33 34 3.070159 ACCGTGGATGATCTTCACCATAG 59.930 47.826 10.48 5.34 32.87 2.23
34 35 3.062763 CGTGGATGATCTTCACCATAGC 58.937 50.000 10.48 0.00 32.87 2.97
35 36 3.406764 GTGGATGATCTTCACCATAGCC 58.593 50.000 10.48 0.00 32.87 3.93
36 37 3.047857 TGGATGATCTTCACCATAGCCA 58.952 45.455 10.48 0.00 0.00 4.75
37 38 3.459227 TGGATGATCTTCACCATAGCCAA 59.541 43.478 10.48 0.00 0.00 4.52
38 39 4.079844 TGGATGATCTTCACCATAGCCAAA 60.080 41.667 10.48 0.00 0.00 3.28
39 40 4.889409 GGATGATCTTCACCATAGCCAAAA 59.111 41.667 10.48 0.00 0.00 2.44
40 41 5.221126 GGATGATCTTCACCATAGCCAAAAC 60.221 44.000 10.48 0.00 0.00 2.43
41 42 4.661222 TGATCTTCACCATAGCCAAAACA 58.339 39.130 0.00 0.00 0.00 2.83
42 43 4.458989 TGATCTTCACCATAGCCAAAACAC 59.541 41.667 0.00 0.00 0.00 3.32
43 44 2.811431 TCTTCACCATAGCCAAAACACG 59.189 45.455 0.00 0.00 0.00 4.49
44 45 2.264005 TCACCATAGCCAAAACACGT 57.736 45.000 0.00 0.00 0.00 4.49
45 46 2.147958 TCACCATAGCCAAAACACGTC 58.852 47.619 0.00 0.00 0.00 4.34
46 47 1.876799 CACCATAGCCAAAACACGTCA 59.123 47.619 0.00 0.00 0.00 4.35
47 48 2.487762 CACCATAGCCAAAACACGTCAT 59.512 45.455 0.00 0.00 0.00 3.06
48 49 3.687212 CACCATAGCCAAAACACGTCATA 59.313 43.478 0.00 0.00 0.00 2.15
49 50 4.335315 CACCATAGCCAAAACACGTCATAT 59.665 41.667 0.00 0.00 0.00 1.78
50 51 4.947388 ACCATAGCCAAAACACGTCATATT 59.053 37.500 0.00 0.00 0.00 1.28
51 52 5.417580 ACCATAGCCAAAACACGTCATATTT 59.582 36.000 0.00 0.00 0.00 1.40
52 53 6.071616 ACCATAGCCAAAACACGTCATATTTT 60.072 34.615 0.00 0.00 0.00 1.82
53 54 6.253298 CCATAGCCAAAACACGTCATATTTTG 59.747 38.462 13.19 13.19 41.10 2.44
59 60 7.775729 CAAAACACGTCATATTTTGGTAGTC 57.224 36.000 12.64 0.00 38.88 2.59
60 61 6.490566 AAACACGTCATATTTTGGTAGTCC 57.509 37.500 0.00 0.00 0.00 3.85
61 62 5.155278 ACACGTCATATTTTGGTAGTCCA 57.845 39.130 0.00 0.00 42.66 4.02
74 75 5.755409 TGGTAGTCCAATGACATGTTACT 57.245 39.130 0.00 0.42 44.33 2.24
75 76 5.487433 TGGTAGTCCAATGACATGTTACTG 58.513 41.667 0.00 0.00 44.33 2.74
76 77 5.247337 TGGTAGTCCAATGACATGTTACTGA 59.753 40.000 0.00 0.00 44.33 3.41
77 78 6.070251 TGGTAGTCCAATGACATGTTACTGAT 60.070 38.462 0.00 0.00 44.33 2.90
78 79 6.258727 GGTAGTCCAATGACATGTTACTGATG 59.741 42.308 0.00 0.00 44.33 3.07
79 80 4.637534 AGTCCAATGACATGTTACTGATGC 59.362 41.667 0.00 0.00 44.33 3.91
80 81 4.395854 GTCCAATGACATGTTACTGATGCA 59.604 41.667 0.00 0.00 41.37 3.96
81 82 5.066893 GTCCAATGACATGTTACTGATGCAT 59.933 40.000 0.00 0.00 41.37 3.96
82 83 6.260714 GTCCAATGACATGTTACTGATGCATA 59.739 38.462 0.00 0.00 41.37 3.14
83 84 6.999871 TCCAATGACATGTTACTGATGCATAT 59.000 34.615 0.00 0.00 0.00 1.78
84 85 7.173735 TCCAATGACATGTTACTGATGCATATC 59.826 37.037 0.00 0.00 0.00 1.63
85 86 7.303261 CAATGACATGTTACTGATGCATATCC 58.697 38.462 0.00 0.00 32.09 2.59
86 87 5.927819 TGACATGTTACTGATGCATATCCA 58.072 37.500 0.00 0.00 32.09 3.41
87 88 5.993441 TGACATGTTACTGATGCATATCCAG 59.007 40.000 11.31 11.31 32.09 3.86
88 89 6.178607 ACATGTTACTGATGCATATCCAGA 57.821 37.500 18.02 2.56 32.09 3.86
89 90 5.994054 ACATGTTACTGATGCATATCCAGAC 59.006 40.000 18.02 9.02 32.09 3.51
90 91 4.620982 TGTTACTGATGCATATCCAGACG 58.379 43.478 18.02 0.00 32.09 4.18
91 92 4.340950 TGTTACTGATGCATATCCAGACGA 59.659 41.667 18.02 3.35 32.09 4.20
92 93 5.011023 TGTTACTGATGCATATCCAGACGAT 59.989 40.000 18.02 1.60 32.09 3.73
93 94 3.922910 ACTGATGCATATCCAGACGATG 58.077 45.455 18.02 0.00 32.09 3.84
94 95 3.323115 ACTGATGCATATCCAGACGATGT 59.677 43.478 18.02 0.00 32.09 3.06
95 96 3.656559 TGATGCATATCCAGACGATGTG 58.343 45.455 0.00 0.00 41.69 3.21
96 97 3.070015 TGATGCATATCCAGACGATGTGT 59.930 43.478 0.00 0.00 41.05 3.72
97 98 2.825205 TGCATATCCAGACGATGTGTG 58.175 47.619 0.00 0.00 41.05 3.82
98 99 2.168313 TGCATATCCAGACGATGTGTGT 59.832 45.455 0.00 0.00 41.05 3.72
99 100 3.383185 TGCATATCCAGACGATGTGTGTA 59.617 43.478 0.00 0.00 41.05 2.90
100 101 4.142049 TGCATATCCAGACGATGTGTGTAA 60.142 41.667 0.00 0.00 41.05 2.41
101 102 4.991056 GCATATCCAGACGATGTGTGTAAT 59.009 41.667 0.00 0.00 41.05 1.89
102 103 5.107337 GCATATCCAGACGATGTGTGTAATG 60.107 44.000 0.00 0.00 41.05 1.90
103 104 2.616960 TCCAGACGATGTGTGTAATGC 58.383 47.619 0.00 0.00 0.00 3.56
104 105 2.028567 TCCAGACGATGTGTGTAATGCA 60.029 45.455 0.00 0.00 0.00 3.96
105 106 2.938451 CCAGACGATGTGTGTAATGCAT 59.062 45.455 0.00 0.00 0.00 3.96
106 107 3.001634 CCAGACGATGTGTGTAATGCATC 59.998 47.826 0.00 0.00 36.57 3.91
111 112 4.598406 GATGTGTGTAATGCATCGTTCA 57.402 40.909 0.00 0.00 31.25 3.18
112 113 3.804518 TGTGTGTAATGCATCGTTCAC 57.195 42.857 0.00 8.66 0.00 3.18
113 114 3.134458 TGTGTGTAATGCATCGTTCACA 58.866 40.909 17.46 17.46 34.23 3.58
114 115 3.750652 TGTGTGTAATGCATCGTTCACAT 59.249 39.130 20.44 0.31 37.93 3.21
115 116 4.932200 TGTGTGTAATGCATCGTTCACATA 59.068 37.500 20.44 17.19 37.93 2.29
116 117 5.063312 TGTGTGTAATGCATCGTTCACATAG 59.937 40.000 20.44 0.00 37.93 2.23
117 118 5.063438 GTGTGTAATGCATCGTTCACATAGT 59.937 40.000 20.44 0.00 37.93 2.12
118 119 5.641636 TGTGTAATGCATCGTTCACATAGTT 59.358 36.000 16.45 0.00 32.19 2.24
119 120 5.959527 GTGTAATGCATCGTTCACATAGTTG 59.040 40.000 0.00 0.00 0.00 3.16
120 121 3.680642 ATGCATCGTTCACATAGTTGC 57.319 42.857 0.00 0.00 0.00 4.17
121 122 2.421619 TGCATCGTTCACATAGTTGCA 58.578 42.857 0.00 0.00 37.99 4.08
122 123 3.009026 TGCATCGTTCACATAGTTGCAT 58.991 40.909 0.00 0.00 36.18 3.96
123 124 3.181508 TGCATCGTTCACATAGTTGCATG 60.182 43.478 0.00 0.00 36.18 4.06
124 125 3.181507 GCATCGTTCACATAGTTGCATGT 60.182 43.478 0.00 0.00 39.76 3.21
134 135 6.816134 ACATAGTTGCATGTGTTTGTATGA 57.184 33.333 0.00 0.00 37.74 2.15
135 136 7.213216 ACATAGTTGCATGTGTTTGTATGAA 57.787 32.000 0.00 0.00 37.74 2.57
136 137 7.829725 ACATAGTTGCATGTGTTTGTATGAAT 58.170 30.769 0.00 0.00 37.74 2.57
137 138 8.306038 ACATAGTTGCATGTGTTTGTATGAATT 58.694 29.630 0.00 0.00 37.74 2.17
138 139 9.142515 CATAGTTGCATGTGTTTGTATGAATTT 57.857 29.630 0.00 0.00 0.00 1.82
139 140 7.410800 AGTTGCATGTGTTTGTATGAATTTG 57.589 32.000 0.00 0.00 0.00 2.32
140 141 6.424509 AGTTGCATGTGTTTGTATGAATTTGG 59.575 34.615 0.00 0.00 0.00 3.28
141 142 4.689812 TGCATGTGTTTGTATGAATTTGGC 59.310 37.500 0.00 0.00 0.00 4.52
142 143 4.201608 GCATGTGTTTGTATGAATTTGGCG 60.202 41.667 0.00 0.00 0.00 5.69
143 144 4.576216 TGTGTTTGTATGAATTTGGCGT 57.424 36.364 0.00 0.00 0.00 5.68
144 145 5.690997 TGTGTTTGTATGAATTTGGCGTA 57.309 34.783 0.00 0.00 0.00 4.42
145 146 5.453648 TGTGTTTGTATGAATTTGGCGTAC 58.546 37.500 0.00 0.00 0.00 3.67
146 147 4.551892 GTGTTTGTATGAATTTGGCGTACG 59.448 41.667 11.84 11.84 31.87 3.67
147 148 4.092816 GTTTGTATGAATTTGGCGTACGG 58.907 43.478 18.39 0.00 31.87 4.02
148 149 2.975266 TGTATGAATTTGGCGTACGGT 58.025 42.857 18.39 0.00 31.87 4.83
149 150 2.673862 TGTATGAATTTGGCGTACGGTG 59.326 45.455 18.39 0.00 31.87 4.94
150 151 2.102070 ATGAATTTGGCGTACGGTGA 57.898 45.000 18.39 0.00 0.00 4.02
151 152 2.102070 TGAATTTGGCGTACGGTGAT 57.898 45.000 18.39 0.00 0.00 3.06
152 153 2.428491 TGAATTTGGCGTACGGTGATT 58.572 42.857 18.39 0.00 0.00 2.57
153 154 2.160615 TGAATTTGGCGTACGGTGATTG 59.839 45.455 18.39 0.00 0.00 2.67
154 155 2.102070 ATTTGGCGTACGGTGATTGA 57.898 45.000 18.39 0.00 0.00 2.57
155 156 1.434555 TTTGGCGTACGGTGATTGAG 58.565 50.000 18.39 0.00 0.00 3.02
156 157 0.604073 TTGGCGTACGGTGATTGAGA 59.396 50.000 18.39 0.00 0.00 3.27
157 158 0.821517 TGGCGTACGGTGATTGAGAT 59.178 50.000 18.39 0.00 0.00 2.75
158 159 1.209128 GGCGTACGGTGATTGAGATG 58.791 55.000 18.39 0.00 0.00 2.90
159 160 1.470979 GGCGTACGGTGATTGAGATGT 60.471 52.381 18.39 0.00 0.00 3.06
160 161 2.268298 GCGTACGGTGATTGAGATGTT 58.732 47.619 18.39 0.00 0.00 2.71
161 162 2.281762 GCGTACGGTGATTGAGATGTTC 59.718 50.000 18.39 0.00 0.00 3.18
162 163 2.530297 CGTACGGTGATTGAGATGTTCG 59.470 50.000 7.57 0.00 0.00 3.95
163 164 2.010145 ACGGTGATTGAGATGTTCGG 57.990 50.000 0.00 0.00 0.00 4.30
164 165 1.275291 ACGGTGATTGAGATGTTCGGT 59.725 47.619 0.00 0.00 0.00 4.69
165 166 2.289444 ACGGTGATTGAGATGTTCGGTT 60.289 45.455 0.00 0.00 0.00 4.44
166 167 2.094258 CGGTGATTGAGATGTTCGGTTG 59.906 50.000 0.00 0.00 0.00 3.77
167 168 3.074412 GGTGATTGAGATGTTCGGTTGT 58.926 45.455 0.00 0.00 0.00 3.32
168 169 3.502211 GGTGATTGAGATGTTCGGTTGTT 59.498 43.478 0.00 0.00 0.00 2.83
169 170 4.693566 GGTGATTGAGATGTTCGGTTGTTA 59.306 41.667 0.00 0.00 0.00 2.41
170 171 5.163854 GGTGATTGAGATGTTCGGTTGTTAG 60.164 44.000 0.00 0.00 0.00 2.34
171 172 4.391830 TGATTGAGATGTTCGGTTGTTAGC 59.608 41.667 0.00 0.00 0.00 3.09
172 173 2.333926 TGAGATGTTCGGTTGTTAGCG 58.666 47.619 0.00 0.00 46.15 4.26
173 174 2.288579 TGAGATGTTCGGTTGTTAGCGT 60.289 45.455 0.00 0.00 45.09 5.07
174 175 2.735134 GAGATGTTCGGTTGTTAGCGTT 59.265 45.455 0.00 0.00 45.09 4.84
175 176 2.735134 AGATGTTCGGTTGTTAGCGTTC 59.265 45.455 0.00 0.00 45.09 3.95
176 177 2.228138 TGTTCGGTTGTTAGCGTTCT 57.772 45.000 0.00 0.00 45.09 3.01
177 178 2.553086 TGTTCGGTTGTTAGCGTTCTT 58.447 42.857 0.00 0.00 45.09 2.52
178 179 2.937799 TGTTCGGTTGTTAGCGTTCTTT 59.062 40.909 0.00 0.00 45.09 2.52
179 180 3.242478 TGTTCGGTTGTTAGCGTTCTTTG 60.242 43.478 0.00 0.00 45.09 2.77
180 181 2.823984 TCGGTTGTTAGCGTTCTTTGA 58.176 42.857 0.00 0.00 45.09 2.69
181 182 2.540931 TCGGTTGTTAGCGTTCTTTGAC 59.459 45.455 0.00 0.00 45.09 3.18
182 183 2.658224 CGGTTGTTAGCGTTCTTTGACG 60.658 50.000 0.00 0.00 45.40 4.35
193 194 5.480281 CGTTCTTTGACGCCTTTAAAATG 57.520 39.130 0.00 0.00 36.12 2.32
194 195 4.381566 CGTTCTTTGACGCCTTTAAAATGG 59.618 41.667 0.00 0.00 36.12 3.16
195 196 5.286438 GTTCTTTGACGCCTTTAAAATGGT 58.714 37.500 0.00 0.00 0.00 3.55
196 197 5.116069 TCTTTGACGCCTTTAAAATGGTC 57.884 39.130 5.63 5.63 0.00 4.02
197 198 3.546002 TTGACGCCTTTAAAATGGTCG 57.454 42.857 7.99 7.99 0.00 4.79
198 199 1.807742 TGACGCCTTTAAAATGGTCGG 59.192 47.619 11.84 1.55 31.86 4.79
199 200 2.078392 GACGCCTTTAAAATGGTCGGA 58.922 47.619 11.84 0.00 31.86 4.55
200 201 2.681344 GACGCCTTTAAAATGGTCGGAT 59.319 45.455 11.84 0.00 31.86 4.18
201 202 3.086282 ACGCCTTTAAAATGGTCGGATT 58.914 40.909 11.84 0.00 31.86 3.01
202 203 3.508402 ACGCCTTTAAAATGGTCGGATTT 59.492 39.130 11.84 0.00 31.86 2.17
203 204 3.857093 CGCCTTTAAAATGGTCGGATTTG 59.143 43.478 0.00 0.00 0.00 2.32
204 205 3.616821 GCCTTTAAAATGGTCGGATTTGC 59.383 43.478 0.00 0.00 0.00 3.68
205 206 4.620567 GCCTTTAAAATGGTCGGATTTGCT 60.621 41.667 0.00 0.00 0.00 3.91
206 207 5.393678 GCCTTTAAAATGGTCGGATTTGCTA 60.394 40.000 0.00 0.00 0.00 3.49
207 208 6.626302 CCTTTAAAATGGTCGGATTTGCTAA 58.374 36.000 0.00 0.00 0.00 3.09
208 209 6.751888 CCTTTAAAATGGTCGGATTTGCTAAG 59.248 38.462 0.00 0.00 0.00 2.18
209 210 6.827586 TTAAAATGGTCGGATTTGCTAAGT 57.172 33.333 0.00 0.00 0.00 2.24
210 211 4.965119 AAATGGTCGGATTTGCTAAGTC 57.035 40.909 0.00 0.00 0.00 3.01
211 212 2.396590 TGGTCGGATTTGCTAAGTCC 57.603 50.000 0.00 0.00 0.00 3.85
212 213 1.906574 TGGTCGGATTTGCTAAGTCCT 59.093 47.619 8.17 0.00 0.00 3.85
213 214 2.280628 GGTCGGATTTGCTAAGTCCTG 58.719 52.381 8.17 3.90 0.00 3.86
214 215 1.666189 GTCGGATTTGCTAAGTCCTGC 59.334 52.381 8.17 0.00 0.00 4.85
215 216 1.017387 CGGATTTGCTAAGTCCTGCC 58.983 55.000 8.17 0.00 0.00 4.85
216 217 1.017387 GGATTTGCTAAGTCCTGCCG 58.983 55.000 0.00 0.00 0.00 5.69
217 218 1.679032 GGATTTGCTAAGTCCTGCCGT 60.679 52.381 0.00 0.00 0.00 5.68
218 219 2.419574 GGATTTGCTAAGTCCTGCCGTA 60.420 50.000 0.00 0.00 0.00 4.02
219 220 2.380084 TTTGCTAAGTCCTGCCGTAG 57.620 50.000 0.00 0.00 0.00 3.51
220 221 1.552578 TTGCTAAGTCCTGCCGTAGA 58.447 50.000 0.00 0.00 0.00 2.59
221 222 1.776662 TGCTAAGTCCTGCCGTAGAT 58.223 50.000 0.00 0.00 0.00 1.98
222 223 1.409064 TGCTAAGTCCTGCCGTAGATG 59.591 52.381 0.00 0.00 0.00 2.90
223 224 1.409427 GCTAAGTCCTGCCGTAGATGT 59.591 52.381 0.00 0.00 0.00 3.06
224 225 2.159085 GCTAAGTCCTGCCGTAGATGTT 60.159 50.000 0.00 0.00 0.00 2.71
225 226 2.674796 AAGTCCTGCCGTAGATGTTC 57.325 50.000 0.00 0.00 0.00 3.18
226 227 1.853963 AGTCCTGCCGTAGATGTTCT 58.146 50.000 0.00 0.00 0.00 3.01
227 228 3.014304 AGTCCTGCCGTAGATGTTCTA 57.986 47.619 0.00 0.00 0.00 2.10
228 229 3.362706 AGTCCTGCCGTAGATGTTCTAA 58.637 45.455 0.00 0.00 29.58 2.10
229 230 3.767673 AGTCCTGCCGTAGATGTTCTAAA 59.232 43.478 0.00 0.00 29.58 1.85
230 231 4.406003 AGTCCTGCCGTAGATGTTCTAAAT 59.594 41.667 0.00 0.00 29.58 1.40
231 232 4.508124 GTCCTGCCGTAGATGTTCTAAATG 59.492 45.833 0.00 0.00 29.58 2.32
232 233 4.161565 TCCTGCCGTAGATGTTCTAAATGT 59.838 41.667 0.00 0.00 29.58 2.71
233 234 4.876107 CCTGCCGTAGATGTTCTAAATGTT 59.124 41.667 0.00 0.00 29.58 2.71
234 235 5.006746 CCTGCCGTAGATGTTCTAAATGTTC 59.993 44.000 0.00 0.00 29.58 3.18
235 236 4.565166 TGCCGTAGATGTTCTAAATGTTCG 59.435 41.667 0.00 0.00 29.58 3.95
236 237 4.550255 GCCGTAGATGTTCTAAATGTTCGC 60.550 45.833 0.00 0.00 29.58 4.70
237 238 4.025979 CCGTAGATGTTCTAAATGTTCGCC 60.026 45.833 0.00 0.00 29.58 5.54
238 239 4.025979 CGTAGATGTTCTAAATGTTCGCCC 60.026 45.833 0.00 0.00 29.58 6.13
239 240 3.279434 AGATGTTCTAAATGTTCGCCCC 58.721 45.455 0.00 0.00 0.00 5.80
240 241 1.444836 TGTTCTAAATGTTCGCCCCG 58.555 50.000 0.00 0.00 0.00 5.73
241 242 1.002201 TGTTCTAAATGTTCGCCCCGA 59.998 47.619 0.00 0.00 0.00 5.14
242 243 1.395954 GTTCTAAATGTTCGCCCCGAC 59.604 52.381 0.00 0.00 34.89 4.79
243 244 0.108041 TCTAAATGTTCGCCCCGACC 60.108 55.000 0.00 0.00 34.89 4.79
244 245 0.391927 CTAAATGTTCGCCCCGACCA 60.392 55.000 0.00 0.00 34.89 4.02
245 246 0.036448 TAAATGTTCGCCCCGACCAA 59.964 50.000 0.00 0.00 31.32 3.67
246 247 1.241315 AAATGTTCGCCCCGACCAAG 61.241 55.000 0.00 0.00 31.32 3.61
247 248 2.406002 AATGTTCGCCCCGACCAAGT 62.406 55.000 0.00 0.00 31.32 3.16
248 249 2.281276 GTTCGCCCCGACCAAGTT 60.281 61.111 0.00 0.00 34.89 2.66
249 250 2.281208 TTCGCCCCGACCAAGTTG 60.281 61.111 0.00 0.00 34.89 3.16
250 251 2.809307 TTCGCCCCGACCAAGTTGA 61.809 57.895 3.87 0.00 34.89 3.18
251 252 2.999739 TTCGCCCCGACCAAGTTGAC 63.000 60.000 3.87 0.00 34.89 3.18
252 253 2.430367 GCCCCGACCAAGTTGACT 59.570 61.111 3.87 0.00 0.00 3.41
253 254 1.228154 GCCCCGACCAAGTTGACTT 60.228 57.895 3.87 0.00 36.45 3.01
254 255 1.235281 GCCCCGACCAAGTTGACTTC 61.235 60.000 3.87 0.00 33.11 3.01
255 256 0.605589 CCCCGACCAAGTTGACTTCC 60.606 60.000 3.87 0.00 33.11 3.46
256 257 0.396811 CCCGACCAAGTTGACTTCCT 59.603 55.000 3.87 0.00 33.11 3.36
257 258 1.621814 CCCGACCAAGTTGACTTCCTA 59.378 52.381 3.87 0.00 33.11 2.94
258 259 2.038033 CCCGACCAAGTTGACTTCCTAA 59.962 50.000 3.87 0.00 33.11 2.69
259 260 3.495453 CCCGACCAAGTTGACTTCCTAAA 60.495 47.826 3.87 0.00 33.11 1.85
260 261 4.324267 CCGACCAAGTTGACTTCCTAAAT 58.676 43.478 3.87 0.00 33.11 1.40
261 262 4.392138 CCGACCAAGTTGACTTCCTAAATC 59.608 45.833 3.87 0.00 33.11 2.17
262 263 4.392138 CGACCAAGTTGACTTCCTAAATCC 59.608 45.833 3.87 0.00 33.11 3.01
263 264 4.324267 ACCAAGTTGACTTCCTAAATCCG 58.676 43.478 3.87 0.00 33.11 4.18
264 265 3.127030 CCAAGTTGACTTCCTAAATCCGC 59.873 47.826 3.87 0.00 33.11 5.54
265 266 2.618053 AGTTGACTTCCTAAATCCGCG 58.382 47.619 0.00 0.00 0.00 6.46
266 267 1.664151 GTTGACTTCCTAAATCCGCGG 59.336 52.381 22.12 22.12 0.00 6.46
267 268 0.461339 TGACTTCCTAAATCCGCGGC 60.461 55.000 23.51 1.51 0.00 6.53
268 269 0.179081 GACTTCCTAAATCCGCGGCT 60.179 55.000 23.51 8.48 0.00 5.52
269 270 0.462047 ACTTCCTAAATCCGCGGCTG 60.462 55.000 23.51 7.97 0.00 4.85
270 271 0.179084 CTTCCTAAATCCGCGGCTGA 60.179 55.000 23.51 3.06 0.00 4.26
271 272 0.250793 TTCCTAAATCCGCGGCTGAA 59.749 50.000 23.51 12.92 0.00 3.02
272 273 0.461339 TCCTAAATCCGCGGCTGAAC 60.461 55.000 23.51 0.00 0.00 3.18
273 274 1.636340 CTAAATCCGCGGCTGAACG 59.364 57.895 23.51 2.75 0.00 3.95
279 280 2.579787 CGCGGCTGAACGGAGTAG 60.580 66.667 0.00 0.00 45.00 2.57
280 281 2.202756 GCGGCTGAACGGAGTAGG 60.203 66.667 0.00 0.00 45.00 3.18
281 282 2.707849 GCGGCTGAACGGAGTAGGA 61.708 63.158 0.00 0.00 45.00 2.94
282 283 2.017559 GCGGCTGAACGGAGTAGGAT 62.018 60.000 0.00 0.00 45.00 3.24
283 284 0.249073 CGGCTGAACGGAGTAGGATG 60.249 60.000 0.00 0.00 45.00 3.51
284 285 0.824759 GGCTGAACGGAGTAGGATGT 59.175 55.000 0.00 0.00 45.00 3.06
285 286 2.029623 GGCTGAACGGAGTAGGATGTA 58.970 52.381 0.00 0.00 45.00 2.29
286 287 2.429610 GGCTGAACGGAGTAGGATGTAA 59.570 50.000 0.00 0.00 45.00 2.41
287 288 3.445857 GCTGAACGGAGTAGGATGTAAC 58.554 50.000 0.00 0.00 45.00 2.50
288 289 3.737355 GCTGAACGGAGTAGGATGTAACC 60.737 52.174 0.00 0.00 45.00 2.85
289 290 2.424601 TGAACGGAGTAGGATGTAACCG 59.575 50.000 0.00 0.00 45.00 4.44
290 291 1.396653 ACGGAGTAGGATGTAACCGG 58.603 55.000 0.00 0.00 41.94 5.28
291 292 0.031721 CGGAGTAGGATGTAACCGGC 59.968 60.000 0.00 0.00 37.28 6.13
292 293 0.031721 GGAGTAGGATGTAACCGGCG 59.968 60.000 0.00 0.00 34.73 6.46
293 294 0.031721 GAGTAGGATGTAACCGGCGG 59.968 60.000 27.06 27.06 34.73 6.13
294 295 1.593479 GTAGGATGTAACCGGCGGC 60.593 63.158 28.71 10.89 34.73 6.53
295 296 2.059190 TAGGATGTAACCGGCGGCA 61.059 57.895 28.71 17.10 34.73 5.69
296 297 2.300850 TAGGATGTAACCGGCGGCAC 62.301 60.000 28.71 24.05 34.73 5.01
297 298 3.199891 GATGTAACCGGCGGCACC 61.200 66.667 28.71 14.25 0.00 5.01
298 299 3.961838 GATGTAACCGGCGGCACCA 62.962 63.158 28.71 19.82 39.03 4.17
299 300 4.992511 TGTAACCGGCGGCACCAC 62.993 66.667 28.71 18.41 39.03 4.16
300 301 4.992511 GTAACCGGCGGCACCACA 62.993 66.667 28.71 1.24 39.03 4.17
301 302 4.023234 TAACCGGCGGCACCACAT 62.023 61.111 28.71 0.15 39.03 3.21
314 315 4.429212 CACATGGTCCGACGGCGA 62.429 66.667 15.16 2.00 40.82 5.54
315 316 4.430765 ACATGGTCCGACGGCGAC 62.431 66.667 15.16 8.71 40.82 5.19
424 425 1.135721 GTCCGACCTGGCGTAATAAGT 59.864 52.381 9.11 0.00 37.80 2.24
425 426 1.406539 TCCGACCTGGCGTAATAAGTC 59.593 52.381 9.11 0.00 37.80 3.01
426 427 1.407979 CCGACCTGGCGTAATAAGTCT 59.592 52.381 9.11 0.00 0.00 3.24
427 428 2.543238 CCGACCTGGCGTAATAAGTCTC 60.543 54.545 9.11 0.00 0.00 3.36
428 429 2.098607 CGACCTGGCGTAATAAGTCTCA 59.901 50.000 0.00 0.00 0.00 3.27
429 430 3.707793 GACCTGGCGTAATAAGTCTCAG 58.292 50.000 0.00 0.00 0.00 3.35
459 460 2.398498 CGAATCAGATACGGAGGCAAG 58.602 52.381 0.00 0.00 0.00 4.01
460 461 2.034685 CGAATCAGATACGGAGGCAAGA 59.965 50.000 0.00 0.00 0.00 3.02
476 533 3.303791 GGCAAGATAATAAAAGGACGCCG 60.304 47.826 0.00 0.00 0.00 6.46
499 560 1.494721 TGGGAAGGCTCTGTTTCTTGT 59.505 47.619 0.00 0.00 0.00 3.16
548 609 0.250166 CCCGTCCACTTTCGACCTTT 60.250 55.000 0.00 0.00 0.00 3.11
549 610 1.145803 CCGTCCACTTTCGACCTTTC 58.854 55.000 0.00 0.00 0.00 2.62
551 612 1.145803 GTCCACTTTCGACCTTTCCG 58.854 55.000 0.00 0.00 0.00 4.30
552 613 0.034337 TCCACTTTCGACCTTTCCGG 59.966 55.000 0.00 0.00 39.35 5.14
555 616 1.003718 CTTTCGACCTTTCCGGCCT 60.004 57.895 0.00 0.00 35.61 5.19
556 617 0.248289 CTTTCGACCTTTCCGGCCTA 59.752 55.000 0.00 0.00 35.61 3.93
557 618 0.037046 TTTCGACCTTTCCGGCCTAC 60.037 55.000 0.00 0.00 35.61 3.18
560 621 2.204029 ACCTTTCCGGCCTACCCA 60.204 61.111 0.00 0.00 35.61 4.51
561 622 2.271173 CCTTTCCGGCCTACCCAC 59.729 66.667 0.00 0.00 0.00 4.61
562 623 2.271173 CTTTCCGGCCTACCCACC 59.729 66.667 0.00 0.00 0.00 4.61
614 682 3.248248 TTCGGCCTACCCACCTCCT 62.248 63.158 0.00 0.00 0.00 3.69
627 695 0.178990 ACCTCCTGTCAGGGTTTTGC 60.179 55.000 19.11 0.00 37.96 3.68
631 699 0.895559 CCTGTCAGGGTTTTGCTCCC 60.896 60.000 11.46 0.00 44.90 4.30
706 777 2.589798 CGCGAGTGGGGAATAAGTAA 57.410 50.000 0.00 0.00 0.00 2.24
709 780 3.718815 GCGAGTGGGGAATAAGTAAGAG 58.281 50.000 0.00 0.00 0.00 2.85
710 781 3.492829 GCGAGTGGGGAATAAGTAAGAGG 60.493 52.174 0.00 0.00 0.00 3.69
711 782 3.069729 CGAGTGGGGAATAAGTAAGAGGG 59.930 52.174 0.00 0.00 0.00 4.30
712 783 4.296056 GAGTGGGGAATAAGTAAGAGGGA 58.704 47.826 0.00 0.00 0.00 4.20
713 784 4.299485 AGTGGGGAATAAGTAAGAGGGAG 58.701 47.826 0.00 0.00 0.00 4.30
714 785 3.046374 TGGGGAATAAGTAAGAGGGAGC 58.954 50.000 0.00 0.00 0.00 4.70
715 786 2.372504 GGGGAATAAGTAAGAGGGAGCC 59.627 54.545 0.00 0.00 0.00 4.70
716 787 2.037381 GGGAATAAGTAAGAGGGAGCCG 59.963 54.545 0.00 0.00 0.00 5.52
717 788 2.548280 GGAATAAGTAAGAGGGAGCCGC 60.548 54.545 0.00 0.00 0.00 6.53
718 789 1.049402 ATAAGTAAGAGGGAGCCGCC 58.951 55.000 0.00 0.00 0.00 6.13
719 790 1.389609 TAAGTAAGAGGGAGCCGCCG 61.390 60.000 0.00 0.00 37.63 6.46
720 791 4.893601 GTAAGAGGGAGCCGCCGC 62.894 72.222 0.00 0.00 37.63 6.53
808 881 2.351924 TTTCCTCTTTGCCCCGCTGT 62.352 55.000 0.00 0.00 0.00 4.40
952 1034 6.758806 TTATCTCAAGTCCCTATTAACCCC 57.241 41.667 0.00 0.00 0.00 4.95
987 1082 4.455533 TCCAATGTTCCTCGATGTTCTTTG 59.544 41.667 0.00 0.00 0.00 2.77
988 1083 4.455533 CCAATGTTCCTCGATGTTCTTTGA 59.544 41.667 0.00 0.00 0.00 2.69
1139 1238 2.031683 AGTTTTGCCTTTCGACTTGACG 59.968 45.455 0.00 0.00 0.00 4.35
1152 1251 3.335579 GACTTGACGCTCAGGGTAAATT 58.664 45.455 0.00 0.00 0.00 1.82
1206 1305 1.995484 CTCAAGGATGTACTGTGCACG 59.005 52.381 13.13 9.67 0.00 5.34
1368 1648 1.154205 CCCAGATGTTCATCGACCGC 61.154 60.000 7.08 0.00 0.00 5.68
1448 1728 8.707938 AAATTTATATTTGAGACCAAGCTTGC 57.292 30.769 21.43 8.45 32.79 4.01
1495 1775 2.772739 GCTATGTCAGCCCACACAG 58.227 57.895 0.00 0.00 45.23 3.66
1539 1819 2.089201 CCACCTAACAATTTCCCGGAC 58.911 52.381 0.73 0.00 0.00 4.79
1800 2083 5.779241 AGGATGAAATGAAGGTGGTTCTA 57.221 39.130 0.00 0.00 35.99 2.10
2041 2324 2.880443 ACCTGACATTGCAACTTGGAT 58.120 42.857 0.00 0.00 0.00 3.41
2099 2383 7.581476 ACATTCGAGTTATGGTTTAGTTTGTG 58.419 34.615 0.97 0.00 0.00 3.33
2101 2385 5.302360 TCGAGTTATGGTTTAGTTTGTGCT 58.698 37.500 0.00 0.00 0.00 4.40
2102 2386 5.178623 TCGAGTTATGGTTTAGTTTGTGCTG 59.821 40.000 0.00 0.00 0.00 4.41
2104 2388 4.022329 AGTTATGGTTTAGTTTGTGCTGCC 60.022 41.667 0.00 0.00 0.00 4.85
2118 2418 3.196039 TGTGCTGCCAATCTTGCAATAAT 59.804 39.130 0.00 0.00 38.46 1.28
2167 2467 1.410153 GGACGTTAAATAGCCCTCGGA 59.590 52.381 0.00 0.00 0.00 4.55
2174 2474 5.578776 GTTAAATAGCCCTCGGATGTTTTG 58.421 41.667 0.00 0.00 34.52 2.44
2213 2513 6.950428 GCGCAGATACTTTTGATTATACATCG 59.050 38.462 0.30 0.00 0.00 3.84
2364 2751 1.377594 TGCATGTAGGTGGCAGCAG 60.378 57.895 20.04 4.27 32.95 4.24
2620 3007 1.211457 ACTGATGCTTGGGATCCAGAC 59.789 52.381 15.23 0.00 33.81 3.51
2635 3022 0.391263 CAGACGAACCAACCCCTAGC 60.391 60.000 0.00 0.00 0.00 3.42
2719 3106 9.546428 AATGCAAAACTTTCACTTATTTAAGCT 57.454 25.926 0.00 0.00 36.79 3.74
2831 3218 4.390909 AGCGTTGATTTACCCTTTTACGAG 59.609 41.667 0.00 0.00 0.00 4.18
2853 3240 0.385390 CGGGTGCTGCTTGTTTTCTT 59.615 50.000 0.00 0.00 0.00 2.52
2870 3257 8.761575 TGTTTTCTTTATGGCTGATTCATTTC 57.238 30.769 0.00 0.00 0.00 2.17
2873 3260 5.192927 TCTTTATGGCTGATTCATTTCGGT 58.807 37.500 0.00 0.00 0.00 4.69
2887 3274 5.817784 TCATTTCGGTATACAAAGGGGAAA 58.182 37.500 5.01 4.94 0.00 3.13
2888 3275 5.883673 TCATTTCGGTATACAAAGGGGAAAG 59.116 40.000 5.01 0.90 0.00 2.62
2889 3276 4.914177 TTCGGTATACAAAGGGGAAAGT 57.086 40.909 5.01 0.00 0.00 2.66
2894 3286 5.503002 GGTATACAAAGGGGAAAGTAGCAA 58.497 41.667 5.01 0.00 0.00 3.91
2901 3293 1.628846 GGGGAAAGTAGCAACAGGAGA 59.371 52.381 0.00 0.00 0.00 3.71
2912 3304 6.663953 AGTAGCAACAGGAGAGAATAACTACA 59.336 38.462 0.00 0.00 31.05 2.74
2925 3317 9.978044 AGAGAATAACTACAACTACGAGTTTTT 57.022 29.630 0.00 0.00 36.03 1.94
2969 3361 0.037326 TGCTCTTCAAGTGGTAGCCG 60.037 55.000 0.00 0.00 32.14 5.52
2972 3364 1.546476 CTCTTCAAGTGGTAGCCGTCT 59.454 52.381 0.00 0.00 0.00 4.18
3002 3394 0.411452 TTGGCCCTGCATCCCTTAAA 59.589 50.000 0.00 0.00 0.00 1.52
3021 3450 3.541996 AAAAACCCTGTCTTGCCTTTG 57.458 42.857 0.00 0.00 0.00 2.77
3029 3458 1.682854 TGTCTTGCCTTTGAAAGCAGG 59.317 47.619 0.00 2.72 40.73 4.85
3034 3466 0.884514 GCCTTTGAAAGCAGGTCCTC 59.115 55.000 0.00 0.00 32.06 3.71
3059 3491 2.148916 TGACCTTTGTAGTGCAGACG 57.851 50.000 0.00 0.00 0.00 4.18
3061 3493 0.602905 ACCTTTGTAGTGCAGACGGC 60.603 55.000 0.00 0.00 45.13 5.68
3091 3523 2.526304 TCAGGGTTGTTCGTTCTCAG 57.474 50.000 0.00 0.00 0.00 3.35
3107 3539 5.696724 CGTTCTCAGTTCTTGGTCATAGTTT 59.303 40.000 0.00 0.00 0.00 2.66
3136 3568 3.951037 TGGTTGTACTGTTGTGCTTCATT 59.049 39.130 0.00 0.00 0.00 2.57
3138 3570 4.976116 GGTTGTACTGTTGTGCTTCATTTC 59.024 41.667 0.00 0.00 0.00 2.17
3141 3573 4.826733 TGTACTGTTGTGCTTCATTTCCAT 59.173 37.500 0.00 0.00 0.00 3.41
3212 3644 3.471680 AGGCAACAACTTGAACTCTCTC 58.528 45.455 0.00 0.00 41.41 3.20
3213 3645 3.135530 AGGCAACAACTTGAACTCTCTCT 59.864 43.478 0.00 0.00 41.41 3.10
3217 3649 4.142609 ACAACTTGAACTCTCTCTGCAA 57.857 40.909 0.00 0.00 0.00 4.08
3226 3658 6.294473 TGAACTCTCTCTGCAATTTCTTCTT 58.706 36.000 0.00 0.00 0.00 2.52
3234 3666 9.125906 CTCTCTGCAATTTCTTCTTAAATGTTG 57.874 33.333 0.00 0.00 0.00 3.33
3235 3667 8.632679 TCTCTGCAATTTCTTCTTAAATGTTGT 58.367 29.630 0.00 0.00 0.00 3.32
3236 3668 9.252962 CTCTGCAATTTCTTCTTAAATGTTGTT 57.747 29.630 0.00 0.00 0.00 2.83
3285 3717 3.270877 ACTCCTCAATAAATCCGTGTGC 58.729 45.455 0.00 0.00 0.00 4.57
3286 3718 3.270027 CTCCTCAATAAATCCGTGTGCA 58.730 45.455 0.00 0.00 0.00 4.57
3300 3732 3.980775 CCGTGTGCAAGAATTTTAACAGG 59.019 43.478 0.00 0.00 0.00 4.00
3317 3749 8.740123 TTTAACAGGTGAGACACTTTGAATAA 57.260 30.769 0.00 0.00 34.40 1.40
3319 3751 7.823745 AACAGGTGAGACACTTTGAATAAAT 57.176 32.000 0.00 0.00 34.40 1.40
3332 3764 9.458374 CACTTTGAATAAATTACCTTTTGACGT 57.542 29.630 0.00 0.00 0.00 4.34
3336 3768 7.932335 TGAATAAATTACCTTTTGACGTGTGT 58.068 30.769 0.00 0.00 0.00 3.72
3353 3789 3.342627 TGTGCGCCGTTGTACTGC 61.343 61.111 4.18 0.00 0.00 4.40
3399 3875 2.484264 GGCATCCTTGTGAACACAGTAC 59.516 50.000 7.67 0.00 42.94 2.73
3460 3936 2.738846 CACAGTGTAGGCATTCAGTGTC 59.261 50.000 14.48 0.00 43.50 3.67
3514 3990 2.899256 ACCAACCCTGAACATTGGATTG 59.101 45.455 9.15 0.00 44.84 2.67
3548 4024 2.225467 GCATTGTAGGCCCTGAATCTC 58.775 52.381 0.00 0.00 0.00 2.75
3549 4025 2.158696 GCATTGTAGGCCCTGAATCTCT 60.159 50.000 0.00 0.00 0.00 3.10
3550 4026 3.071602 GCATTGTAGGCCCTGAATCTCTA 59.928 47.826 0.00 0.00 0.00 2.43
3591 4067 8.630917 CAAATTCTGCTTTGGATAGATTCAGAT 58.369 33.333 0.00 0.00 33.42 2.90
3592 4068 7.982761 ATTCTGCTTTGGATAGATTCAGATC 57.017 36.000 0.00 0.00 0.00 2.75
3593 4069 6.490241 TCTGCTTTGGATAGATTCAGATCA 57.510 37.500 0.00 0.00 34.60 2.92
3594 4070 7.075851 TCTGCTTTGGATAGATTCAGATCAT 57.924 36.000 0.00 0.00 34.60 2.45
3595 4071 7.160049 TCTGCTTTGGATAGATTCAGATCATC 58.840 38.462 0.00 0.00 34.60 2.92
3596 4072 6.834107 TGCTTTGGATAGATTCAGATCATCA 58.166 36.000 0.00 0.00 34.60 3.07
3618 4094 6.002082 TCATCATCATCATCATCCAAAGGAC 58.998 40.000 0.00 0.00 32.98 3.85
3673 4149 6.806751 TGTTATCACCTACTTCTGCATCTAC 58.193 40.000 0.00 0.00 0.00 2.59
3674 4150 6.607600 TGTTATCACCTACTTCTGCATCTACT 59.392 38.462 0.00 0.00 0.00 2.57
3680 4156 5.717178 ACCTACTTCTGCATCTACTTTCTCA 59.283 40.000 0.00 0.00 0.00 3.27
3709 4185 5.133999 ACAAATCCTCATCCAGATCTTCCAT 59.866 40.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.676471 ATCCACGGTTGCCCTTGC 60.676 61.111 0.00 0.00 38.26 4.01
3 4 0.680921 ATCATCCACGGTTGCCCTTG 60.681 55.000 0.00 0.00 0.00 3.61
6 7 0.394352 AAGATCATCCACGGTTGCCC 60.394 55.000 0.00 0.00 0.00 5.36
7 8 1.017387 GAAGATCATCCACGGTTGCC 58.983 55.000 0.00 0.00 0.00 4.52
8 9 1.398390 GTGAAGATCATCCACGGTTGC 59.602 52.381 0.00 0.00 0.00 4.17
9 10 2.009774 GGTGAAGATCATCCACGGTTG 58.990 52.381 0.00 0.00 0.00 3.77
10 11 1.628340 TGGTGAAGATCATCCACGGTT 59.372 47.619 0.00 0.00 0.00 4.44
11 12 1.275666 TGGTGAAGATCATCCACGGT 58.724 50.000 0.00 0.00 0.00 4.83
12 13 2.627515 ATGGTGAAGATCATCCACGG 57.372 50.000 0.00 0.00 32.98 4.94
13 14 3.062763 GCTATGGTGAAGATCATCCACG 58.937 50.000 0.00 0.00 32.98 4.94
14 15 3.181451 TGGCTATGGTGAAGATCATCCAC 60.181 47.826 0.00 0.00 32.98 4.02
15 16 3.047857 TGGCTATGGTGAAGATCATCCA 58.952 45.455 0.00 0.00 34.05 3.41
16 17 3.777106 TGGCTATGGTGAAGATCATCC 57.223 47.619 0.00 0.00 0.00 3.51
17 18 5.357878 TGTTTTGGCTATGGTGAAGATCATC 59.642 40.000 0.00 0.00 0.00 2.92
18 19 5.126061 GTGTTTTGGCTATGGTGAAGATCAT 59.874 40.000 0.00 0.00 0.00 2.45
19 20 4.458989 GTGTTTTGGCTATGGTGAAGATCA 59.541 41.667 0.00 0.00 0.00 2.92
20 21 4.437390 CGTGTTTTGGCTATGGTGAAGATC 60.437 45.833 0.00 0.00 0.00 2.75
21 22 3.440173 CGTGTTTTGGCTATGGTGAAGAT 59.560 43.478 0.00 0.00 0.00 2.40
22 23 2.811431 CGTGTTTTGGCTATGGTGAAGA 59.189 45.455 0.00 0.00 0.00 2.87
23 24 2.552315 ACGTGTTTTGGCTATGGTGAAG 59.448 45.455 0.00 0.00 0.00 3.02
24 25 2.550606 GACGTGTTTTGGCTATGGTGAA 59.449 45.455 0.00 0.00 0.00 3.18
25 26 2.147958 GACGTGTTTTGGCTATGGTGA 58.852 47.619 0.00 0.00 0.00 4.02
26 27 1.876799 TGACGTGTTTTGGCTATGGTG 59.123 47.619 0.00 0.00 0.00 4.17
27 28 2.264005 TGACGTGTTTTGGCTATGGT 57.736 45.000 0.00 0.00 0.00 3.55
28 29 5.499139 AATATGACGTGTTTTGGCTATGG 57.501 39.130 0.00 0.00 0.00 2.74
29 30 7.208379 CAAAATATGACGTGTTTTGGCTATG 57.792 36.000 17.38 0.00 42.09 2.23
35 36 6.799925 GGACTACCAAAATATGACGTGTTTTG 59.200 38.462 17.94 17.94 44.08 2.44
36 37 6.487331 TGGACTACCAAAATATGACGTGTTTT 59.513 34.615 0.00 0.00 43.91 2.43
37 38 5.998981 TGGACTACCAAAATATGACGTGTTT 59.001 36.000 0.00 0.00 43.91 2.83
38 39 5.553123 TGGACTACCAAAATATGACGTGTT 58.447 37.500 0.00 0.00 43.91 3.32
39 40 5.155278 TGGACTACCAAAATATGACGTGT 57.845 39.130 0.00 0.00 43.91 4.49
52 53 5.247337 TCAGTAACATGTCATTGGACTACCA 59.753 40.000 0.00 0.00 44.61 3.25
53 54 5.730550 TCAGTAACATGTCATTGGACTACC 58.269 41.667 0.00 0.00 44.61 3.18
54 55 6.238211 GCATCAGTAACATGTCATTGGACTAC 60.238 42.308 0.00 0.00 44.61 2.73
55 56 5.817296 GCATCAGTAACATGTCATTGGACTA 59.183 40.000 0.00 0.00 44.61 2.59
56 57 4.637534 GCATCAGTAACATGTCATTGGACT 59.362 41.667 0.00 0.00 44.61 3.85
57 58 4.395854 TGCATCAGTAACATGTCATTGGAC 59.604 41.667 0.00 0.00 44.57 4.02
58 59 4.587891 TGCATCAGTAACATGTCATTGGA 58.412 39.130 0.00 0.00 0.00 3.53
59 60 4.968812 TGCATCAGTAACATGTCATTGG 57.031 40.909 0.00 0.00 0.00 3.16
60 61 7.040961 TGGATATGCATCAGTAACATGTCATTG 60.041 37.037 0.19 0.00 34.65 2.82
61 62 6.999871 TGGATATGCATCAGTAACATGTCATT 59.000 34.615 0.19 0.00 34.65 2.57
62 63 6.536447 TGGATATGCATCAGTAACATGTCAT 58.464 36.000 0.19 0.00 34.65 3.06
63 64 5.927819 TGGATATGCATCAGTAACATGTCA 58.072 37.500 0.19 0.00 34.65 3.58
64 65 6.146837 GTCTGGATATGCATCAGTAACATGTC 59.853 42.308 0.19 0.00 32.87 3.06
65 66 5.994054 GTCTGGATATGCATCAGTAACATGT 59.006 40.000 0.19 0.00 32.32 3.21
66 67 5.119743 CGTCTGGATATGCATCAGTAACATG 59.880 44.000 0.19 0.00 32.32 3.21
67 68 5.011023 TCGTCTGGATATGCATCAGTAACAT 59.989 40.000 0.19 0.00 32.32 2.71
68 69 4.340950 TCGTCTGGATATGCATCAGTAACA 59.659 41.667 0.19 0.00 32.32 2.41
69 70 4.871513 TCGTCTGGATATGCATCAGTAAC 58.128 43.478 0.19 0.00 32.32 2.50
70 71 5.011023 ACATCGTCTGGATATGCATCAGTAA 59.989 40.000 0.19 0.00 32.85 2.24
71 72 4.524328 ACATCGTCTGGATATGCATCAGTA 59.476 41.667 0.19 0.00 32.85 2.74
72 73 3.323115 ACATCGTCTGGATATGCATCAGT 59.677 43.478 0.19 0.00 32.85 3.41
73 74 3.678548 CACATCGTCTGGATATGCATCAG 59.321 47.826 0.19 4.84 32.85 2.90
74 75 3.070015 ACACATCGTCTGGATATGCATCA 59.930 43.478 0.19 0.00 32.62 3.07
75 76 3.431233 CACACATCGTCTGGATATGCATC 59.569 47.826 0.19 0.00 32.62 3.91
76 77 3.181462 ACACACATCGTCTGGATATGCAT 60.181 43.478 3.79 3.79 32.62 3.96
77 78 2.168313 ACACACATCGTCTGGATATGCA 59.832 45.455 0.00 0.00 32.62 3.96
78 79 2.826428 ACACACATCGTCTGGATATGC 58.174 47.619 0.00 0.00 32.62 3.14
79 80 5.107337 GCATTACACACATCGTCTGGATATG 60.107 44.000 0.00 0.00 35.62 1.78
80 81 4.991056 GCATTACACACATCGTCTGGATAT 59.009 41.667 0.00 0.00 32.85 1.63
81 82 4.142049 TGCATTACACACATCGTCTGGATA 60.142 41.667 0.00 0.00 32.85 2.59
82 83 3.198068 GCATTACACACATCGTCTGGAT 58.802 45.455 0.00 0.00 35.09 3.41
83 84 2.028567 TGCATTACACACATCGTCTGGA 60.029 45.455 0.00 0.00 0.00 3.86
84 85 2.345876 TGCATTACACACATCGTCTGG 58.654 47.619 0.00 0.00 0.00 3.86
85 86 4.187594 GATGCATTACACACATCGTCTG 57.812 45.455 0.00 0.00 31.70 3.51
90 91 4.142924 TGTGAACGATGCATTACACACATC 60.143 41.667 19.09 0.00 37.44 3.06
91 92 3.750652 TGTGAACGATGCATTACACACAT 59.249 39.130 19.09 0.00 34.19 3.21
92 93 3.134458 TGTGAACGATGCATTACACACA 58.866 40.909 19.09 19.09 34.19 3.72
93 94 3.804518 TGTGAACGATGCATTACACAC 57.195 42.857 18.10 16.94 34.19 3.82
94 95 5.175127 ACTATGTGAACGATGCATTACACA 58.825 37.500 21.57 21.57 41.28 3.72
95 96 5.718649 ACTATGTGAACGATGCATTACAC 57.281 39.130 0.00 9.68 0.00 2.90
96 97 5.447144 GCAACTATGTGAACGATGCATTACA 60.447 40.000 0.00 2.54 32.80 2.41
97 98 4.963953 GCAACTATGTGAACGATGCATTAC 59.036 41.667 0.00 0.00 32.80 1.89
98 99 4.633565 TGCAACTATGTGAACGATGCATTA 59.366 37.500 0.00 0.00 37.40 1.90
99 100 3.439825 TGCAACTATGTGAACGATGCATT 59.560 39.130 0.00 0.00 37.40 3.56
100 101 3.009026 TGCAACTATGTGAACGATGCAT 58.991 40.909 0.00 0.00 37.40 3.96
101 102 2.421619 TGCAACTATGTGAACGATGCA 58.578 42.857 0.00 0.00 39.73 3.96
102 103 3.181507 ACATGCAACTATGTGAACGATGC 60.182 43.478 0.00 0.00 39.68 3.91
103 104 4.604843 ACATGCAACTATGTGAACGATG 57.395 40.909 0.00 0.00 39.68 3.84
111 112 6.816134 TCATACAAACACATGCAACTATGT 57.184 33.333 0.00 0.00 41.77 2.29
112 113 8.692110 AATTCATACAAACACATGCAACTATG 57.308 30.769 0.00 0.00 0.00 2.23
113 114 9.142515 CAAATTCATACAAACACATGCAACTAT 57.857 29.630 0.00 0.00 0.00 2.12
114 115 7.598118 CCAAATTCATACAAACACATGCAACTA 59.402 33.333 0.00 0.00 0.00 2.24
115 116 6.424509 CCAAATTCATACAAACACATGCAACT 59.575 34.615 0.00 0.00 0.00 3.16
116 117 6.592166 CCAAATTCATACAAACACATGCAAC 58.408 36.000 0.00 0.00 0.00 4.17
117 118 5.178996 GCCAAATTCATACAAACACATGCAA 59.821 36.000 0.00 0.00 0.00 4.08
118 119 4.689812 GCCAAATTCATACAAACACATGCA 59.310 37.500 0.00 0.00 0.00 3.96
119 120 4.201608 CGCCAAATTCATACAAACACATGC 60.202 41.667 0.00 0.00 0.00 4.06
120 121 4.922692 ACGCCAAATTCATACAAACACATG 59.077 37.500 0.00 0.00 0.00 3.21
121 122 5.132897 ACGCCAAATTCATACAAACACAT 57.867 34.783 0.00 0.00 0.00 3.21
122 123 4.576216 ACGCCAAATTCATACAAACACA 57.424 36.364 0.00 0.00 0.00 3.72
123 124 4.551892 CGTACGCCAAATTCATACAAACAC 59.448 41.667 0.52 0.00 0.00 3.32
124 125 4.378563 CCGTACGCCAAATTCATACAAACA 60.379 41.667 10.49 0.00 0.00 2.83
125 126 4.092816 CCGTACGCCAAATTCATACAAAC 58.907 43.478 10.49 0.00 0.00 2.93
126 127 3.752222 ACCGTACGCCAAATTCATACAAA 59.248 39.130 10.49 0.00 0.00 2.83
127 128 3.125487 CACCGTACGCCAAATTCATACAA 59.875 43.478 10.49 0.00 0.00 2.41
128 129 2.673862 CACCGTACGCCAAATTCATACA 59.326 45.455 10.49 0.00 0.00 2.29
129 130 2.931325 TCACCGTACGCCAAATTCATAC 59.069 45.455 10.49 0.00 0.00 2.39
130 131 3.248495 TCACCGTACGCCAAATTCATA 57.752 42.857 10.49 0.00 0.00 2.15
131 132 2.102070 TCACCGTACGCCAAATTCAT 57.898 45.000 10.49 0.00 0.00 2.57
132 133 2.102070 ATCACCGTACGCCAAATTCA 57.898 45.000 10.49 0.00 0.00 2.57
133 134 2.417239 TCAATCACCGTACGCCAAATTC 59.583 45.455 10.49 0.00 0.00 2.17
134 135 2.418628 CTCAATCACCGTACGCCAAATT 59.581 45.455 10.49 3.82 0.00 1.82
135 136 2.006888 CTCAATCACCGTACGCCAAAT 58.993 47.619 10.49 0.00 0.00 2.32
136 137 1.001068 TCTCAATCACCGTACGCCAAA 59.999 47.619 10.49 0.00 0.00 3.28
137 138 0.604073 TCTCAATCACCGTACGCCAA 59.396 50.000 10.49 0.00 0.00 4.52
138 139 0.821517 ATCTCAATCACCGTACGCCA 59.178 50.000 10.49 0.00 0.00 5.69
139 140 1.209128 CATCTCAATCACCGTACGCC 58.791 55.000 10.49 0.00 0.00 5.68
140 141 1.922570 ACATCTCAATCACCGTACGC 58.077 50.000 10.49 0.00 0.00 4.42
141 142 2.530297 CGAACATCTCAATCACCGTACG 59.470 50.000 8.69 8.69 0.00 3.67
142 143 2.858344 CCGAACATCTCAATCACCGTAC 59.142 50.000 0.00 0.00 0.00 3.67
143 144 2.494471 ACCGAACATCTCAATCACCGTA 59.506 45.455 0.00 0.00 0.00 4.02
144 145 1.275291 ACCGAACATCTCAATCACCGT 59.725 47.619 0.00 0.00 0.00 4.83
145 146 2.010145 ACCGAACATCTCAATCACCG 57.990 50.000 0.00 0.00 0.00 4.94
146 147 3.074412 ACAACCGAACATCTCAATCACC 58.926 45.455 0.00 0.00 0.00 4.02
147 148 4.749245 AACAACCGAACATCTCAATCAC 57.251 40.909 0.00 0.00 0.00 3.06
148 149 4.391830 GCTAACAACCGAACATCTCAATCA 59.608 41.667 0.00 0.00 0.00 2.57
149 150 4.492570 CGCTAACAACCGAACATCTCAATC 60.493 45.833 0.00 0.00 0.00 2.67
150 151 3.370978 CGCTAACAACCGAACATCTCAAT 59.629 43.478 0.00 0.00 0.00 2.57
151 152 2.734606 CGCTAACAACCGAACATCTCAA 59.265 45.455 0.00 0.00 0.00 3.02
152 153 2.288579 ACGCTAACAACCGAACATCTCA 60.289 45.455 0.00 0.00 0.00 3.27
153 154 2.334838 ACGCTAACAACCGAACATCTC 58.665 47.619 0.00 0.00 0.00 2.75
154 155 2.450609 ACGCTAACAACCGAACATCT 57.549 45.000 0.00 0.00 0.00 2.90
155 156 2.735134 AGAACGCTAACAACCGAACATC 59.265 45.455 0.00 0.00 0.00 3.06
156 157 2.762745 AGAACGCTAACAACCGAACAT 58.237 42.857 0.00 0.00 0.00 2.71
157 158 2.228138 AGAACGCTAACAACCGAACA 57.772 45.000 0.00 0.00 0.00 3.18
158 159 3.001533 TCAAAGAACGCTAACAACCGAAC 59.998 43.478 0.00 0.00 0.00 3.95
159 160 3.001533 GTCAAAGAACGCTAACAACCGAA 59.998 43.478 0.00 0.00 0.00 4.30
160 161 2.540931 GTCAAAGAACGCTAACAACCGA 59.459 45.455 0.00 0.00 0.00 4.69
161 162 2.658224 CGTCAAAGAACGCTAACAACCG 60.658 50.000 0.00 0.00 35.64 4.44
162 163 2.899977 CGTCAAAGAACGCTAACAACC 58.100 47.619 0.00 0.00 35.64 3.77
171 172 4.381566 CCATTTTAAAGGCGTCAAAGAACG 59.618 41.667 0.00 0.00 45.31 3.95
172 173 5.286438 ACCATTTTAAAGGCGTCAAAGAAC 58.714 37.500 0.00 0.00 0.00 3.01
173 174 5.523438 ACCATTTTAAAGGCGTCAAAGAA 57.477 34.783 0.00 0.00 0.00 2.52
174 175 4.319911 CGACCATTTTAAAGGCGTCAAAGA 60.320 41.667 9.97 0.00 0.00 2.52
175 176 3.911964 CGACCATTTTAAAGGCGTCAAAG 59.088 43.478 9.97 0.00 0.00 2.77
176 177 3.304794 CCGACCATTTTAAAGGCGTCAAA 60.305 43.478 9.97 0.00 0.00 2.69
177 178 2.226912 CCGACCATTTTAAAGGCGTCAA 59.773 45.455 9.97 0.00 0.00 3.18
178 179 1.807742 CCGACCATTTTAAAGGCGTCA 59.192 47.619 9.97 0.00 0.00 4.35
179 180 2.078392 TCCGACCATTTTAAAGGCGTC 58.922 47.619 1.15 1.76 0.00 5.19
180 181 2.188062 TCCGACCATTTTAAAGGCGT 57.812 45.000 1.15 0.00 0.00 5.68
181 182 3.775661 AATCCGACCATTTTAAAGGCG 57.224 42.857 0.00 0.00 0.00 5.52
182 183 3.616821 GCAAATCCGACCATTTTAAAGGC 59.383 43.478 0.00 0.00 0.00 4.35
183 184 5.072040 AGCAAATCCGACCATTTTAAAGG 57.928 39.130 0.00 0.00 0.00 3.11
184 185 7.312899 ACTTAGCAAATCCGACCATTTTAAAG 58.687 34.615 0.00 0.00 0.00 1.85
185 186 7.222000 ACTTAGCAAATCCGACCATTTTAAA 57.778 32.000 0.00 0.00 0.00 1.52
186 187 6.127842 GGACTTAGCAAATCCGACCATTTTAA 60.128 38.462 0.00 0.00 0.00 1.52
187 188 5.355910 GGACTTAGCAAATCCGACCATTTTA 59.644 40.000 0.00 0.00 0.00 1.52
188 189 4.157840 GGACTTAGCAAATCCGACCATTTT 59.842 41.667 0.00 0.00 0.00 1.82
189 190 3.694566 GGACTTAGCAAATCCGACCATTT 59.305 43.478 0.00 0.00 0.00 2.32
190 191 3.054361 AGGACTTAGCAAATCCGACCATT 60.054 43.478 0.00 0.00 37.60 3.16
191 192 2.505819 AGGACTTAGCAAATCCGACCAT 59.494 45.455 0.00 0.00 37.60 3.55
192 193 1.906574 AGGACTTAGCAAATCCGACCA 59.093 47.619 0.00 0.00 37.60 4.02
193 194 2.280628 CAGGACTTAGCAAATCCGACC 58.719 52.381 0.00 0.00 37.60 4.79
194 195 1.666189 GCAGGACTTAGCAAATCCGAC 59.334 52.381 0.00 0.00 37.60 4.79
195 196 1.406887 GGCAGGACTTAGCAAATCCGA 60.407 52.381 0.00 0.00 37.60 4.55
196 197 1.017387 GGCAGGACTTAGCAAATCCG 58.983 55.000 0.00 0.00 37.60 4.18
197 198 1.017387 CGGCAGGACTTAGCAAATCC 58.983 55.000 0.00 0.00 0.00 3.01
198 199 1.739067 ACGGCAGGACTTAGCAAATC 58.261 50.000 0.00 0.00 0.00 2.17
199 200 2.500098 TCTACGGCAGGACTTAGCAAAT 59.500 45.455 0.00 0.00 0.00 2.32
200 201 1.897133 TCTACGGCAGGACTTAGCAAA 59.103 47.619 0.00 0.00 0.00 3.68
201 202 1.552578 TCTACGGCAGGACTTAGCAA 58.447 50.000 0.00 0.00 0.00 3.91
202 203 1.409064 CATCTACGGCAGGACTTAGCA 59.591 52.381 0.00 0.00 0.00 3.49
203 204 1.409427 ACATCTACGGCAGGACTTAGC 59.591 52.381 0.00 0.00 0.00 3.09
204 205 3.381908 AGAACATCTACGGCAGGACTTAG 59.618 47.826 0.00 0.00 0.00 2.18
205 206 3.362706 AGAACATCTACGGCAGGACTTA 58.637 45.455 0.00 0.00 0.00 2.24
206 207 2.180276 AGAACATCTACGGCAGGACTT 58.820 47.619 0.00 0.00 0.00 3.01
207 208 1.853963 AGAACATCTACGGCAGGACT 58.146 50.000 0.00 0.00 0.00 3.85
208 209 3.795623 TTAGAACATCTACGGCAGGAC 57.204 47.619 0.00 0.00 0.00 3.85
209 210 4.161565 ACATTTAGAACATCTACGGCAGGA 59.838 41.667 0.00 0.00 0.00 3.86
210 211 4.442706 ACATTTAGAACATCTACGGCAGG 58.557 43.478 0.00 0.00 0.00 4.85
211 212 5.276395 CGAACATTTAGAACATCTACGGCAG 60.276 44.000 0.00 0.00 0.00 4.85
212 213 4.565166 CGAACATTTAGAACATCTACGGCA 59.435 41.667 0.00 0.00 0.00 5.69
213 214 4.550255 GCGAACATTTAGAACATCTACGGC 60.550 45.833 0.00 0.00 0.00 5.68
214 215 4.025979 GGCGAACATTTAGAACATCTACGG 60.026 45.833 0.00 0.00 0.00 4.02
215 216 4.025979 GGGCGAACATTTAGAACATCTACG 60.026 45.833 0.00 0.00 0.00 3.51
216 217 4.272748 GGGGCGAACATTTAGAACATCTAC 59.727 45.833 0.00 0.00 0.00 2.59
217 218 4.448210 GGGGCGAACATTTAGAACATCTA 58.552 43.478 0.00 0.00 0.00 1.98
218 219 3.279434 GGGGCGAACATTTAGAACATCT 58.721 45.455 0.00 0.00 0.00 2.90
219 220 2.031683 CGGGGCGAACATTTAGAACATC 59.968 50.000 0.00 0.00 0.00 3.06
220 221 2.014128 CGGGGCGAACATTTAGAACAT 58.986 47.619 0.00 0.00 0.00 2.71
221 222 1.002201 TCGGGGCGAACATTTAGAACA 59.998 47.619 0.00 0.00 31.06 3.18
222 223 1.395954 GTCGGGGCGAACATTTAGAAC 59.604 52.381 0.00 0.00 37.72 3.01
223 224 1.676615 GGTCGGGGCGAACATTTAGAA 60.677 52.381 0.00 0.00 43.67 2.10
224 225 0.108041 GGTCGGGGCGAACATTTAGA 60.108 55.000 0.00 0.00 43.67 2.10
225 226 2.390427 GGTCGGGGCGAACATTTAG 58.610 57.895 0.00 0.00 43.67 1.85
226 227 4.621832 GGTCGGGGCGAACATTTA 57.378 55.556 0.00 0.00 43.67 1.40
231 232 2.281276 AACTTGGTCGGGGCGAAC 60.281 61.111 0.00 0.00 44.56 3.95
232 233 2.281208 CAACTTGGTCGGGGCGAA 60.281 61.111 0.00 0.00 37.72 4.70
233 234 3.235481 TCAACTTGGTCGGGGCGA 61.235 61.111 0.00 0.00 0.00 5.54
234 235 3.047877 GTCAACTTGGTCGGGGCG 61.048 66.667 0.00 0.00 0.00 6.13
235 236 1.228154 AAGTCAACTTGGTCGGGGC 60.228 57.895 0.00 0.00 34.38 5.80
236 237 0.605589 GGAAGTCAACTTGGTCGGGG 60.606 60.000 0.00 0.00 36.11 5.73
237 238 0.396811 AGGAAGTCAACTTGGTCGGG 59.603 55.000 0.00 0.00 36.11 5.14
238 239 3.396260 TTAGGAAGTCAACTTGGTCGG 57.604 47.619 0.00 0.00 36.11 4.79
239 240 4.392138 GGATTTAGGAAGTCAACTTGGTCG 59.608 45.833 0.00 0.00 36.11 4.79
240 241 4.392138 CGGATTTAGGAAGTCAACTTGGTC 59.608 45.833 0.00 0.00 36.11 4.02
241 242 4.324267 CGGATTTAGGAAGTCAACTTGGT 58.676 43.478 0.00 0.00 36.11 3.67
242 243 3.127030 GCGGATTTAGGAAGTCAACTTGG 59.873 47.826 0.00 0.00 36.11 3.61
243 244 3.181520 CGCGGATTTAGGAAGTCAACTTG 60.182 47.826 0.00 0.00 36.11 3.16
244 245 3.000727 CGCGGATTTAGGAAGTCAACTT 58.999 45.455 0.00 0.00 39.23 2.66
245 246 2.618053 CGCGGATTTAGGAAGTCAACT 58.382 47.619 0.00 0.00 0.00 3.16
246 247 1.664151 CCGCGGATTTAGGAAGTCAAC 59.336 52.381 24.07 0.00 0.00 3.18
247 248 2.010043 GCCGCGGATTTAGGAAGTCAA 61.010 52.381 33.48 0.00 0.00 3.18
248 249 0.461339 GCCGCGGATTTAGGAAGTCA 60.461 55.000 33.48 0.00 0.00 3.41
249 250 0.179081 AGCCGCGGATTTAGGAAGTC 60.179 55.000 33.48 6.03 0.00 3.01
250 251 0.462047 CAGCCGCGGATTTAGGAAGT 60.462 55.000 33.48 0.00 0.00 3.01
251 252 0.179084 TCAGCCGCGGATTTAGGAAG 60.179 55.000 33.48 9.19 0.00 3.46
252 253 0.250793 TTCAGCCGCGGATTTAGGAA 59.749 50.000 33.48 19.99 0.00 3.36
253 254 0.461339 GTTCAGCCGCGGATTTAGGA 60.461 55.000 33.48 14.17 0.00 2.94
254 255 1.762222 CGTTCAGCCGCGGATTTAGG 61.762 60.000 33.48 14.66 0.00 2.69
255 256 1.636340 CGTTCAGCCGCGGATTTAG 59.364 57.895 33.48 11.91 0.00 1.85
256 257 3.788817 CGTTCAGCCGCGGATTTA 58.211 55.556 33.48 10.91 0.00 1.40
262 263 2.579787 CTACTCCGTTCAGCCGCG 60.580 66.667 0.00 0.00 0.00 6.46
263 264 2.017559 ATCCTACTCCGTTCAGCCGC 62.018 60.000 0.00 0.00 0.00 6.53
264 265 0.249073 CATCCTACTCCGTTCAGCCG 60.249 60.000 0.00 0.00 0.00 5.52
265 266 0.824759 ACATCCTACTCCGTTCAGCC 59.175 55.000 0.00 0.00 0.00 4.85
266 267 3.445857 GTTACATCCTACTCCGTTCAGC 58.554 50.000 0.00 0.00 0.00 4.26
267 268 3.488721 CGGTTACATCCTACTCCGTTCAG 60.489 52.174 0.00 0.00 34.38 3.02
268 269 2.424601 CGGTTACATCCTACTCCGTTCA 59.575 50.000 0.00 0.00 34.38 3.18
269 270 2.223665 CCGGTTACATCCTACTCCGTTC 60.224 54.545 0.00 0.00 36.84 3.95
270 271 1.753073 CCGGTTACATCCTACTCCGTT 59.247 52.381 0.00 0.00 36.84 4.44
271 272 1.396653 CCGGTTACATCCTACTCCGT 58.603 55.000 0.00 0.00 36.84 4.69
272 273 0.031721 GCCGGTTACATCCTACTCCG 59.968 60.000 1.90 0.00 38.05 4.63
273 274 0.031721 CGCCGGTTACATCCTACTCC 59.968 60.000 1.90 0.00 0.00 3.85
274 275 0.031721 CCGCCGGTTACATCCTACTC 59.968 60.000 1.90 0.00 0.00 2.59
275 276 2.024590 GCCGCCGGTTACATCCTACT 62.025 60.000 4.45 0.00 0.00 2.57
276 277 1.593479 GCCGCCGGTTACATCCTAC 60.593 63.158 4.45 0.00 0.00 3.18
277 278 2.059190 TGCCGCCGGTTACATCCTA 61.059 57.895 4.45 0.00 0.00 2.94
278 279 3.395702 TGCCGCCGGTTACATCCT 61.396 61.111 4.45 0.00 0.00 3.24
279 280 3.199891 GTGCCGCCGGTTACATCC 61.200 66.667 4.45 0.00 0.00 3.51
280 281 3.199891 GGTGCCGCCGGTTACATC 61.200 66.667 4.45 0.00 0.00 3.06
281 282 4.023234 TGGTGCCGCCGGTTACAT 62.023 61.111 4.45 0.00 41.21 2.29
282 283 4.992511 GTGGTGCCGCCGGTTACA 62.993 66.667 4.45 0.00 41.21 2.41
283 284 4.992511 TGTGGTGCCGCCGGTTAC 62.993 66.667 4.45 4.43 41.21 2.50
284 285 4.023234 ATGTGGTGCCGCCGGTTA 62.023 61.111 4.45 0.00 41.21 2.85
297 298 4.429212 TCGCCGTCGGACCATGTG 62.429 66.667 17.49 0.00 36.13 3.21
298 299 4.430765 GTCGCCGTCGGACCATGT 62.431 66.667 17.49 0.00 36.13 3.21
351 352 4.974721 ACCTGTTGGCCCGGCAAG 62.975 66.667 12.58 2.80 36.63 4.01
362 363 3.382832 CTCGGGCTCGGACCTGTT 61.383 66.667 5.94 0.00 37.37 3.16
412 413 3.819564 ATGCTGAGACTTATTACGCCA 57.180 42.857 0.00 0.00 0.00 5.69
424 425 2.874648 ATTCGCGCCCAATGCTGAGA 62.875 55.000 0.00 0.00 38.05 3.27
425 426 2.384391 GATTCGCGCCCAATGCTGAG 62.384 60.000 0.00 0.00 38.05 3.35
426 427 2.438254 ATTCGCGCCCAATGCTGA 60.438 55.556 0.00 0.00 38.05 4.26
427 428 2.025156 GATTCGCGCCCAATGCTG 59.975 61.111 0.00 0.00 38.05 4.41
428 429 2.438254 TGATTCGCGCCCAATGCT 60.438 55.556 0.00 0.00 38.05 3.79
429 430 1.789078 ATCTGATTCGCGCCCAATGC 61.789 55.000 0.00 0.00 0.00 3.56
459 460 2.223377 CAGCCGGCGTCCTTTTATTATC 59.777 50.000 23.20 0.00 0.00 1.75
460 461 2.218603 CAGCCGGCGTCCTTTTATTAT 58.781 47.619 23.20 0.00 0.00 1.28
476 533 0.962855 GAAACAGAGCCTTCCCAGCC 60.963 60.000 0.00 0.00 0.00 4.85
484 541 2.224402 GGACAGACAAGAAACAGAGCCT 60.224 50.000 0.00 0.00 0.00 4.58
499 560 2.915659 AACGCAGGGACGGACAGA 60.916 61.111 0.00 0.00 37.37 3.41
597 665 3.680196 AGGAGGTGGGTAGGCCGA 61.680 66.667 0.00 0.00 34.97 5.54
614 682 0.260230 TTGGGAGCAAAACCCTGACA 59.740 50.000 0.00 0.00 46.82 3.58
627 695 3.092301 GGTTTCCTTTGAGGATTGGGAG 58.908 50.000 0.00 0.00 45.34 4.30
631 699 6.095440 ACGATATTGGTTTCCTTTGAGGATTG 59.905 38.462 0.00 0.00 45.34 2.67
845 926 4.860352 TGCATCAGAAAAATCGCATCTTTG 59.140 37.500 0.00 0.00 0.00 2.77
951 1033 1.355720 ACATTGGAGAACAAGAGGGGG 59.644 52.381 0.00 0.00 43.48 5.40
952 1034 2.887151 ACATTGGAGAACAAGAGGGG 57.113 50.000 0.00 0.00 43.48 4.79
987 1082 0.548031 TCCCCATTCCAGTGCTGATC 59.452 55.000 0.02 0.00 0.00 2.92
988 1083 1.002069 TTCCCCATTCCAGTGCTGAT 58.998 50.000 0.02 0.00 0.00 2.90
1115 1214 5.205565 GTCAAGTCGAAAGGCAAAACTAAG 58.794 41.667 0.00 0.00 38.99 2.18
1139 1238 7.051000 AGTAGAGAAATCAATTTACCCTGAGC 58.949 38.462 0.00 0.00 0.00 4.26
1206 1305 9.651913 TCTTTTGCAGGTAATTTGGATAAAATC 57.348 29.630 0.00 0.00 37.51 2.17
1448 1728 2.710377 TCCAATTGTTGAGGTGATCGG 58.290 47.619 4.43 0.00 0.00 4.18
1495 1775 4.201763 CGCCAAATCAAAAGCTAGACTCTC 60.202 45.833 0.00 0.00 0.00 3.20
1539 1819 5.251468 TGGGAATCTGTAATGATCCCCATAG 59.749 44.000 6.69 0.00 44.53 2.23
1800 2083 1.531748 CAGGTGGGATAATGGCCGT 59.468 57.895 0.00 0.00 0.00 5.68
2041 2324 1.108776 AATACCTCTAGCCGTTGCGA 58.891 50.000 0.00 0.00 44.33 5.10
2118 2418 5.563475 GCTCTGAAAGATAAAACAGCAAGCA 60.563 40.000 0.00 0.00 45.62 3.91
2120 2420 5.397326 GGCTCTGAAAGATAAAACAGCAAG 58.603 41.667 0.00 0.00 45.62 4.01
2167 2467 2.363306 TGCCTGAGGTGACAAAACAT 57.637 45.000 0.00 0.00 0.00 2.71
2174 2474 3.503363 GCGCATGCCTGAGGTGAC 61.503 66.667 13.15 0.00 33.98 3.67
2213 2513 8.254508 AGTAGAGGATTTTGTCACTATCTTCAC 58.745 37.037 7.71 5.12 29.62 3.18
2364 2751 6.890293 AGTCATCAAGATTAGTAGGGTTTCC 58.110 40.000 0.00 0.00 0.00 3.13
2595 2982 2.158696 GGATCCCAAGCATCAGTTAGCT 60.159 50.000 0.00 0.00 44.31 3.32
2620 3007 0.464452 CTAGGCTAGGGGTTGGTTCG 59.536 60.000 13.92 0.00 0.00 3.95
2635 3022 1.957177 TCAAGAGCGGCACTATCTAGG 59.043 52.381 1.45 0.00 0.00 3.02
2752 3139 8.904099 AATGTAAGATTTAATCTACTTCCGGG 57.096 34.615 7.98 0.00 39.08 5.73
2798 3185 3.319137 AAATCAACGCTGCTCTCAGTA 57.681 42.857 0.00 0.00 42.29 2.74
2831 3218 1.734388 AAAACAAGCAGCACCCGGAC 61.734 55.000 0.73 0.00 0.00 4.79
2853 3240 7.220740 TGTATACCGAAATGAATCAGCCATAA 58.779 34.615 0.00 0.00 0.00 1.90
2870 3257 4.124970 GCTACTTTCCCCTTTGTATACCG 58.875 47.826 0.00 0.00 0.00 4.02
2873 3260 6.129414 TGTTGCTACTTTCCCCTTTGTATA 57.871 37.500 0.00 0.00 0.00 1.47
2887 3274 6.663953 TGTAGTTATTCTCTCCTGTTGCTACT 59.336 38.462 0.00 0.00 0.00 2.57
2888 3275 6.864342 TGTAGTTATTCTCTCCTGTTGCTAC 58.136 40.000 0.00 0.00 0.00 3.58
2889 3276 7.178628 AGTTGTAGTTATTCTCTCCTGTTGCTA 59.821 37.037 0.00 0.00 0.00 3.49
2894 3286 6.883217 TCGTAGTTGTAGTTATTCTCTCCTGT 59.117 38.462 0.00 0.00 0.00 4.00
2901 3293 8.985805 CCAAAAACTCGTAGTTGTAGTTATTCT 58.014 33.333 1.80 0.00 38.66 2.40
2912 3304 4.612264 TCCTAGCCAAAAACTCGTAGTT 57.388 40.909 0.00 0.00 40.80 2.24
2969 3361 5.534654 TGCAGGGCCAATAATATTTGTAGAC 59.465 40.000 6.18 0.00 0.00 2.59
2972 3364 5.480073 GGATGCAGGGCCAATAATATTTGTA 59.520 40.000 6.18 0.00 0.00 2.41
3002 3394 2.745968 TCAAAGGCAAGACAGGGTTTT 58.254 42.857 0.00 0.00 0.00 2.43
3010 3402 1.683385 ACCTGCTTTCAAAGGCAAGAC 59.317 47.619 0.00 0.00 38.02 3.01
3029 3458 1.700186 ACAAAGGTCAAGGAGGAGGAC 59.300 52.381 0.00 0.00 0.00 3.85
3034 3466 2.224523 TGCACTACAAAGGTCAAGGAGG 60.225 50.000 0.00 0.00 0.00 4.30
3059 3491 1.680338 ACCCTGATAGCAAATTCGCC 58.320 50.000 0.00 0.00 0.00 5.54
3061 3493 4.662145 GAACAACCCTGATAGCAAATTCG 58.338 43.478 0.00 0.00 0.00 3.34
3091 3523 6.128634 CCAGTTACGAAACTATGACCAAGAAC 60.129 42.308 0.00 0.00 44.28 3.01
3107 3539 4.114073 CACAACAGTACAACCAGTTACGA 58.886 43.478 0.00 0.00 0.00 3.43
3136 3568 5.003160 CGGCACTTGATATAATCCATGGAA 58.997 41.667 20.67 2.92 0.00 3.53
3138 3570 3.127548 GCGGCACTTGATATAATCCATGG 59.872 47.826 4.97 4.97 0.00 3.66
3141 3573 2.371841 AGGCGGCACTTGATATAATCCA 59.628 45.455 13.08 0.00 0.00 3.41
3237 3669 9.639563 TCAGAGATAATCAGAAGATAGACACTT 57.360 33.333 0.00 0.00 33.08 3.16
3238 3670 9.639563 TTCAGAGATAATCAGAAGATAGACACT 57.360 33.333 0.00 0.00 33.08 3.55
3239 3671 9.677567 GTTCAGAGATAATCAGAAGATAGACAC 57.322 37.037 0.00 0.00 34.45 3.67
3240 3672 9.639563 AGTTCAGAGATAATCAGAAGATAGACA 57.360 33.333 0.00 0.00 34.45 3.41
3285 3717 7.264373 AGTGTCTCACCTGTTAAAATTCTTG 57.736 36.000 0.00 0.00 34.49 3.02
3286 3718 7.881775 AAGTGTCTCACCTGTTAAAATTCTT 57.118 32.000 0.00 0.00 34.49 2.52
3317 3749 4.732355 GCACACACACGTCAAAAGGTAATT 60.732 41.667 0.00 0.00 0.00 1.40
3319 3751 2.096174 GCACACACACGTCAAAAGGTAA 59.904 45.455 0.00 0.00 0.00 2.85
3330 3762 4.936248 CAACGGCGCACACACACG 62.936 66.667 10.83 3.69 0.00 4.49
3332 3764 2.202892 TACAACGGCGCACACACA 60.203 55.556 10.83 0.00 0.00 3.72
3336 3768 3.342627 GCAGTACAACGGCGCACA 61.343 61.111 10.83 0.00 28.26 4.57
3344 3780 2.230660 AGCTTCAAAGGGCAGTACAAC 58.769 47.619 0.00 0.00 0.00 3.32
3460 3936 7.452880 TGGTGAAATGAAAGAACTAAGGATG 57.547 36.000 0.00 0.00 0.00 3.51
3514 3990 1.542915 ACAATGCAGAAGGTGACATGC 59.457 47.619 0.00 0.00 37.16 4.06
3591 4067 6.659242 CCTTTGGATGATGATGATGATGATGA 59.341 38.462 0.00 0.00 0.00 2.92
3592 4068 6.659242 TCCTTTGGATGATGATGATGATGATG 59.341 38.462 0.00 0.00 0.00 3.07
3593 4069 6.659668 GTCCTTTGGATGATGATGATGATGAT 59.340 38.462 0.00 0.00 32.73 2.45
3594 4070 6.002082 GTCCTTTGGATGATGATGATGATGA 58.998 40.000 0.00 0.00 32.73 2.92
3595 4071 5.183331 GGTCCTTTGGATGATGATGATGATG 59.817 44.000 0.00 0.00 32.73 3.07
3596 4072 5.163023 TGGTCCTTTGGATGATGATGATGAT 60.163 40.000 0.00 0.00 32.73 2.45
3618 4094 9.434420 GAAGGAATGATATGTAGAAGAAGATGG 57.566 37.037 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.