Multiple sequence alignment - TraesCS5B01G027800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G027800 chr5B 100.000 3272 0 0 1 3272 26914154 26917425 0.000000e+00 6043.0
1 TraesCS5B01G027800 chr5D 92.799 3291 170 21 1 3272 35981910 35985152 0.000000e+00 4702.0
2 TraesCS5B01G027800 chr5D 94.444 54 3 0 2069 2122 35984008 35984061 2.090000e-12 84.2
3 TraesCS5B01G027800 chr5A 92.109 2522 142 20 1 2505 24774478 24776959 0.000000e+00 3502.0
4 TraesCS5B01G027800 chr5A 90.181 886 84 3 2204 3088 25027668 25026785 0.000000e+00 1151.0
5 TraesCS5B01G027800 chr5A 91.839 772 50 7 2503 3272 24777210 24777970 0.000000e+00 1064.0
6 TraesCS5B01G027800 chr5A 90.647 139 12 1 3080 3218 25025291 25025154 2.010000e-42 183.0
7 TraesCS5B01G027800 chr5A 84.337 166 26 0 1978 2143 25055361 25055196 2.610000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G027800 chr5B 26914154 26917425 3271 False 6043.0 6043 100.0000 1 3272 1 chr5B.!!$F1 3271
1 TraesCS5B01G027800 chr5D 35981910 35985152 3242 False 2393.1 4702 93.6215 1 3272 2 chr5D.!!$F1 3271
2 TraesCS5B01G027800 chr5A 24774478 24777970 3492 False 2283.0 3502 91.9740 1 3272 2 chr5A.!!$F1 3271
3 TraesCS5B01G027800 chr5A 25025154 25027668 2514 True 667.0 1151 90.4140 2204 3218 2 chr5A.!!$R2 1014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
791 794 0.036306 AAGGCCTTGTTCCTGGTACG 59.964 55.0 19.73 0.0 33.43 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2737 3011 0.603707 AGTTGCTGGTGACGACATGG 60.604 55.0 0.0 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.911053 TCACCATGCATGTGCCTCTA 59.089 50.000 24.58 5.05 41.18 2.43
68 69 2.579207 GTGTCTAGCTGATACGCCAA 57.421 50.000 0.00 0.00 0.00 4.52
93 94 2.125952 CAGCACGATGAGCCACGA 60.126 61.111 0.00 0.00 0.00 4.35
98 99 2.178273 CGATGAGCCACGACGACA 59.822 61.111 0.00 0.00 0.00 4.35
141 142 4.034975 GGAGAGTTGAGCTGCATGATTTAC 59.965 45.833 1.02 0.00 0.00 2.01
225 226 1.078848 AGATCCTCGGCACTGCAAC 60.079 57.895 2.82 0.00 0.00 4.17
357 358 4.808414 CTTGATGAGTGGTCAAGTCCTA 57.192 45.455 7.51 0.00 44.67 2.94
505 506 1.390565 TAGGTACCTCTCTTCGCTGC 58.609 55.000 20.32 0.00 0.00 5.25
548 551 6.100404 TCCCAAGAAAATCAATCAAAGTGG 57.900 37.500 0.00 0.00 0.00 4.00
571 574 5.580297 GGACAGAAGACATTTGTTTGCAAAA 59.420 36.000 14.67 0.00 46.23 2.44
643 646 2.936202 ACTGCCATACATTCCACATCC 58.064 47.619 0.00 0.00 0.00 3.51
649 652 4.037208 GCCATACATTCCACATCCTTCTTG 59.963 45.833 0.00 0.00 0.00 3.02
650 653 5.195940 CCATACATTCCACATCCTTCTTGT 58.804 41.667 0.00 0.00 0.00 3.16
711 714 6.590656 TGATATTTGATACCCCTCCTTTGT 57.409 37.500 0.00 0.00 0.00 2.83
774 777 7.558161 TGCTCTGATTGAATAATGTGGTAAG 57.442 36.000 0.00 0.00 0.00 2.34
791 794 0.036306 AAGGCCTTGTTCCTGGTACG 59.964 55.000 19.73 0.00 33.43 3.67
803 806 2.629137 TCCTGGTACGTTTTGCTGTCTA 59.371 45.455 0.00 0.00 0.00 2.59
897 903 6.375174 TGTTTCCATTCATCAGGAACTACATG 59.625 38.462 0.00 0.00 43.23 3.21
904 910 2.358957 TCAGGAACTACATGCACATGC 58.641 47.619 10.50 0.00 38.61 4.06
933 940 1.071699 TGTTACCACAGCAAGACCTCC 59.928 52.381 0.00 0.00 0.00 4.30
960 967 3.476552 TCCACTTGAATCTTGACACCAC 58.523 45.455 0.00 0.00 0.00 4.16
1080 1087 1.107114 GCTCGTCCTCCTCTTCATCA 58.893 55.000 0.00 0.00 0.00 3.07
1082 1089 1.680735 CTCGTCCTCCTCTTCATCAGG 59.319 57.143 0.00 0.00 0.00 3.86
1119 1126 5.011090 ACGATGATTTCTTCCAGATCGAA 57.989 39.130 0.00 0.00 36.92 3.71
1152 1159 1.912862 ATACCCAATTCTCCCTGGCT 58.087 50.000 0.00 0.00 0.00 4.75
1167 1174 1.072505 GGCTGGACCAAACCTCGAA 59.927 57.895 6.03 0.00 38.86 3.71
1172 1179 1.702957 TGGACCAAACCTCGAAGGATT 59.297 47.619 7.76 0.21 37.67 3.01
1173 1180 2.107552 TGGACCAAACCTCGAAGGATTT 59.892 45.455 7.76 3.06 37.67 2.17
1184 1191 1.739371 CGAAGGATTTCCAGACCCGAC 60.739 57.143 0.00 0.00 38.89 4.79
1200 1207 1.437986 GACAAGGATCCCCTCGTCG 59.562 63.158 8.55 0.00 43.48 5.12
1239 1246 1.238439 CATTGCAAACCGACTGGAGT 58.762 50.000 1.71 0.00 39.21 3.85
1251 1258 0.959553 ACTGGAGTGTCACGTCGAAT 59.040 50.000 0.00 0.00 0.00 3.34
1518 1534 0.243636 CGACCAACTTTGCATTCCCC 59.756 55.000 0.00 0.00 0.00 4.81
1524 1540 3.368323 CCAACTTTGCATTCCCCATGTAC 60.368 47.826 0.00 0.00 34.98 2.90
1561 1577 2.438021 TGCACCCCCTATTAGCTAACTG 59.562 50.000 8.70 4.50 0.00 3.16
1588 1604 6.576662 TCAGTATGAAGTTCTTTCTCGACT 57.423 37.500 4.17 0.00 45.97 4.18
1604 1620 3.655486 TCGACTTTTTCAGTTATCGCCA 58.345 40.909 0.00 0.00 35.01 5.69
1612 1628 8.959499 ACTTTTTCAGTTATCGCCATACACTGG 61.959 40.741 11.00 0.00 39.62 4.00
1655 1671 9.817809 TTAAATAGCTAACTACCTGTGAAGATG 57.182 33.333 0.00 0.00 0.00 2.90
1793 1810 6.976934 AATGTTTGAATTGTGTTACCTCCT 57.023 33.333 0.00 0.00 0.00 3.69
1801 1818 7.001674 TGAATTGTGTTACCTCCTATTGTTGT 58.998 34.615 0.00 0.00 0.00 3.32
1853 1872 3.011708 ACCCCCAGATGCAAAGAGTTAAT 59.988 43.478 0.00 0.00 0.00 1.40
1860 1879 7.198390 CCAGATGCAAAGAGTTAATTGTATGG 58.802 38.462 0.00 0.00 32.99 2.74
1864 1883 9.669353 GATGCAAAGAGTTAATTGTATGGTATG 57.331 33.333 0.00 0.00 32.99 2.39
2097 2117 1.656818 AAGCCGCAATGGAATCACCG 61.657 55.000 0.00 0.00 42.00 4.94
2103 2123 1.202114 GCAATGGAATCACCGAAAGCA 59.798 47.619 0.00 0.00 42.61 3.91
2125 2145 1.818060 CAATGGAATCACCGAAAGCCA 59.182 47.619 0.00 0.00 42.61 4.75
2129 2149 1.068541 GGAATCACCGAAAGCCACAAC 60.069 52.381 0.00 0.00 0.00 3.32
2130 2150 1.606668 GAATCACCGAAAGCCACAACA 59.393 47.619 0.00 0.00 0.00 3.33
2184 2204 0.615331 CTGAAGAAGCCCCAGTAGCA 59.385 55.000 0.00 0.00 0.00 3.49
2185 2205 0.615331 TGAAGAAGCCCCAGTAGCAG 59.385 55.000 0.00 0.00 0.00 4.24
2186 2206 0.905357 GAAGAAGCCCCAGTAGCAGA 59.095 55.000 0.00 0.00 0.00 4.26
2187 2207 1.279271 GAAGAAGCCCCAGTAGCAGAA 59.721 52.381 0.00 0.00 0.00 3.02
2188 2208 0.615850 AGAAGCCCCAGTAGCAGAAC 59.384 55.000 0.00 0.00 0.00 3.01
2189 2209 0.393132 GAAGCCCCAGTAGCAGAACC 60.393 60.000 0.00 0.00 0.00 3.62
2192 2212 2.125106 CCCAGTAGCAGAACCGGC 60.125 66.667 0.00 0.00 0.00 6.13
2283 2303 6.313905 CGTTCTGTTGCTAAGGAGTATTCAAT 59.686 38.462 0.00 0.00 0.00 2.57
2330 2350 5.568685 TGGTTCTTTCTCTAGATGACTCG 57.431 43.478 0.00 0.00 0.00 4.18
2383 2403 4.584325 GGCCTTATACTGATTTGCAATCCA 59.416 41.667 0.00 0.13 0.00 3.41
2387 2407 7.010460 GCCTTATACTGATTTGCAATCCAAAAC 59.990 37.037 0.00 0.00 45.80 2.43
2538 2811 7.288810 TGGGATATTTGTTTTATCATGGAGC 57.711 36.000 0.00 0.00 0.00 4.70
2541 2814 7.373493 GGATATTTGTTTTATCATGGAGCCAG 58.627 38.462 0.00 0.00 0.00 4.85
2589 2862 2.938451 TGAGGATGCGTAGATGCTTTTG 59.062 45.455 0.00 0.00 35.36 2.44
2680 2954 8.552034 GTGTGTAGGTGCTATCTTTTCATATTC 58.448 37.037 0.00 0.00 0.00 1.75
2743 3017 6.006449 AGGACCTAATTATGAATGCCATGTC 58.994 40.000 0.00 0.00 36.71 3.06
2768 3042 6.603095 GTCACCAGCAACTACAGAAAATTAG 58.397 40.000 0.00 0.00 0.00 1.73
2789 3063 9.453572 AATTAGCATCTCACAATCAAGTAAGAA 57.546 29.630 0.00 0.00 0.00 2.52
2821 3095 4.803329 AGGAAGGCAGACCAATCAATAT 57.197 40.909 0.00 0.00 39.06 1.28
2941 3215 4.272489 CAGGGCCTCTGAAACATGAAATA 58.728 43.478 0.95 0.00 46.18 1.40
3013 3288 8.472007 TTTTTAGTTCAACAACCAGGACATAT 57.528 30.769 0.00 0.00 32.22 1.78
3014 3289 9.575868 TTTTTAGTTCAACAACCAGGACATATA 57.424 29.630 0.00 0.00 32.22 0.86
3018 3293 4.460263 TCAACAACCAGGACATATATGCC 58.540 43.478 12.79 13.94 0.00 4.40
3040 3315 3.128589 CGGGGAACACAAAGATACCATTG 59.871 47.826 0.00 0.00 0.00 2.82
3076 3355 3.694734 CAAAACACAACAGTAGGCACAG 58.305 45.455 0.00 0.00 0.00 3.66
3094 4876 3.508793 CACAGAAGAAACATTGGCAGGAT 59.491 43.478 0.00 0.00 0.00 3.24
3130 4912 6.968904 CCACACTACATTGTCATAGCATTTTC 59.031 38.462 0.00 0.00 0.00 2.29
3136 4918 4.514545 TTGTCATAGCATTTTCGTAGCG 57.485 40.909 0.00 0.00 0.00 4.26
3166 4948 3.181496 GGCAATCTCCGGAATGACTTTTC 60.181 47.826 5.23 0.00 28.20 2.29
3169 4951 1.066430 TCTCCGGAATGACTTTTCCCG 60.066 52.381 5.23 0.00 41.87 5.14
3187 4969 1.723608 CGTGCCCAGCAAACTCACAA 61.724 55.000 0.00 0.00 41.47 3.33
3190 4972 0.675633 GCCCAGCAAACTCACAACAT 59.324 50.000 0.00 0.00 0.00 2.71
3218 5000 1.327303 TCAGCCGCCAACAAAATTCT 58.673 45.000 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.608130 TAGACACGAAGCAGGCATGT 59.392 50.000 0.00 0.00 0.00 3.21
68 69 1.945394 GCTCATCGTGCTGGATTCAAT 59.055 47.619 0.00 0.00 0.00 2.57
93 94 0.179127 CTGTCATCGGAGCATGTCGT 60.179 55.000 0.00 0.00 0.00 4.34
118 119 2.328819 ATCATGCAGCTCAACTCTCC 57.671 50.000 0.00 0.00 0.00 3.71
141 142 2.815647 GCCTCCGCTTGTTCCGAG 60.816 66.667 0.00 0.00 0.00 4.63
281 282 9.899661 AACACTACACTATAATTAGCCAATCAA 57.100 29.630 0.00 0.00 0.00 2.57
303 304 2.438434 CGGAGGATGGGCCAACAC 60.438 66.667 11.89 5.31 40.02 3.32
357 358 1.710244 TCACCCACTCATTCCCATTGT 59.290 47.619 0.00 0.00 0.00 2.71
505 506 0.251916 TGTGGGGCCGAAGATAACAG 59.748 55.000 0.00 0.00 0.00 3.16
548 551 6.311200 ACTTTTGCAAACAAATGTCTTCTGTC 59.689 34.615 12.39 0.00 45.79 3.51
571 574 2.972713 TGACAGGCTTACCTCTTTCACT 59.027 45.455 0.00 0.00 46.34 3.41
601 604 7.377131 GCAGTACAGAAAGAACAATCAAAGAAC 59.623 37.037 0.00 0.00 0.00 3.01
667 670 6.726258 TCAATACTACTGCACATTTCACAG 57.274 37.500 0.00 0.00 37.45 3.66
711 714 4.069304 CCCAGGTCAATTTCTGTACGAAA 58.931 43.478 12.85 12.85 45.08 3.46
774 777 0.250597 AACGTACCAGGAACAAGGCC 60.251 55.000 0.00 0.00 0.00 5.19
791 794 7.913297 TGTGAACAAAACTATAGACAGCAAAAC 59.087 33.333 6.78 0.00 0.00 2.43
803 806 5.642063 CCTCCGTACATGTGAACAAAACTAT 59.358 40.000 9.11 0.00 0.00 2.12
897 903 0.604578 AACACTTCATGGGCATGTGC 59.395 50.000 0.00 0.00 39.72 4.57
933 940 5.916883 GTGTCAAGATTCAAGTGGATTTGTG 59.083 40.000 0.00 0.00 0.00 3.33
960 967 2.682352 TCCGTGTTAATGTGCCATCATG 59.318 45.455 0.00 0.00 0.00 3.07
1008 1015 1.202290 GCAGGGTTGGCATTTGTATCG 60.202 52.381 0.00 0.00 0.00 2.92
1080 1087 2.203788 TCTTCGTCCAGGTGCCCT 60.204 61.111 0.00 0.00 0.00 5.19
1082 1089 2.227089 ATCGTCTTCGTCCAGGTGCC 62.227 60.000 0.00 0.00 38.33 5.01
1152 1159 1.358152 ATCCTTCGAGGTTTGGTCCA 58.642 50.000 0.00 0.00 36.53 4.02
1167 1174 1.279271 CTTGTCGGGTCTGGAAATCCT 59.721 52.381 0.44 0.00 36.82 3.24
1172 1179 0.902531 GATCCTTGTCGGGTCTGGAA 59.097 55.000 0.00 0.00 40.00 3.53
1173 1180 0.976073 GGATCCTTGTCGGGTCTGGA 60.976 60.000 3.84 0.00 42.95 3.86
1184 1191 2.017559 GACCGACGAGGGGATCCTTG 62.018 65.000 12.58 0.00 45.05 3.61
1200 1207 0.599204 TTGACGTCCTTGCGAAGACC 60.599 55.000 14.12 0.00 35.59 3.85
1239 1246 0.109272 GAGCCTCATTCGACGTGACA 60.109 55.000 0.00 0.00 0.00 3.58
1251 1258 1.565067 TGATGCTGAAGAGAGCCTCA 58.435 50.000 0.00 0.00 40.15 3.86
1479 1495 0.673644 CGCTTCCTTCGGAATGGTGT 60.674 55.000 0.00 0.00 41.23 4.16
1484 1500 1.810030 GTCGCGCTTCCTTCGGAAT 60.810 57.895 5.56 0.00 41.23 3.01
1518 1534 3.154710 TGGTATAGAGAGGCCGTACATG 58.845 50.000 0.00 0.00 0.00 3.21
1524 1540 0.969149 TGCATGGTATAGAGAGGCCG 59.031 55.000 0.00 0.00 0.00 6.13
1561 1577 8.004905 GTCGAGAAAGAACTTCATACTGAAAAC 58.995 37.037 0.00 0.00 35.73 2.43
1588 1604 5.123186 CCAGTGTATGGCGATAACTGAAAAA 59.877 40.000 21.29 0.00 43.83 1.94
1604 1620 6.069963 AGGAGATAAAAAGAGTGCCAGTGTAT 60.070 38.462 0.00 0.00 0.00 2.29
1612 1628 9.114952 AGCTATTTAAGGAGATAAAAAGAGTGC 57.885 33.333 0.00 0.00 0.00 4.40
1689 1705 9.601971 CGATTACGAGGAAAACAATTTTAAAGA 57.398 29.630 0.00 0.00 42.66 2.52
1690 1706 9.389570 ACGATTACGAGGAAAACAATTTTAAAG 57.610 29.630 0.00 0.00 42.66 1.85
1691 1707 9.733219 AACGATTACGAGGAAAACAATTTTAAA 57.267 25.926 0.00 0.00 42.66 1.52
1692 1708 9.384682 GAACGATTACGAGGAAAACAATTTTAA 57.615 29.630 0.00 0.00 42.66 1.52
1693 1709 8.557864 TGAACGATTACGAGGAAAACAATTTTA 58.442 29.630 0.00 0.00 42.66 1.52
1706 1722 2.098607 TGCCTAGGTGAACGATTACGAG 59.901 50.000 11.31 0.00 42.66 4.18
1707 1723 2.093890 TGCCTAGGTGAACGATTACGA 58.906 47.619 11.31 0.00 42.66 3.43
1829 1846 1.992557 ACTCTTTGCATCTGGGGGTAA 59.007 47.619 0.00 0.00 0.00 2.85
1840 1857 8.574251 ACATACCATACAATTAACTCTTTGCA 57.426 30.769 0.00 0.00 0.00 4.08
1841 1858 8.893727 AGACATACCATACAATTAACTCTTTGC 58.106 33.333 0.00 0.00 0.00 3.68
1853 1872 6.429692 CACCAAGTGAAAGACATACCATACAA 59.570 38.462 0.00 0.00 35.23 2.41
2031 2051 1.451567 CTCTGGCTCTGGTGCATGG 60.452 63.158 0.00 0.00 34.04 3.66
2097 2117 2.733227 CGGTGATTCCATTGCTGCTTTC 60.733 50.000 0.00 0.00 35.57 2.62
2103 2123 1.474077 GCTTTCGGTGATTCCATTGCT 59.526 47.619 0.00 0.00 35.57 3.91
2125 2145 2.549754 CAGCTTTCGGTGATTCTGTTGT 59.450 45.455 0.00 0.00 41.05 3.32
2129 2149 4.201851 CCATTACAGCTTTCGGTGATTCTG 60.202 45.833 0.00 0.00 41.05 3.02
2130 2150 3.941483 CCATTACAGCTTTCGGTGATTCT 59.059 43.478 0.00 0.00 41.05 2.40
2283 2303 1.971505 ATTCGGATTGAGAGCGCCCA 61.972 55.000 2.29 0.00 0.00 5.36
2383 2403 7.175641 CCAGTTCCTGATCTGATTTACAGTTTT 59.824 37.037 0.38 0.00 39.49 2.43
2387 2407 5.982356 TCCAGTTCCTGATCTGATTTACAG 58.018 41.667 0.38 0.00 39.68 2.74
2509 2782 9.701098 CCATGATAAAACAAATATCCCAATCAG 57.299 33.333 0.00 0.00 0.00 2.90
2641 2915 7.826690 AGCACCTACACACCTTAATTTTATTG 58.173 34.615 0.00 0.00 0.00 1.90
2737 3011 0.603707 AGTTGCTGGTGACGACATGG 60.604 55.000 0.00 0.00 0.00 3.66
2743 3017 2.148916 TTCTGTAGTTGCTGGTGACG 57.851 50.000 0.00 0.00 0.00 4.35
2789 3063 5.104569 TGGTCTGCCTTCCTTTTTCATTTTT 60.105 36.000 0.00 0.00 35.27 1.94
2821 3095 7.759489 AGGAAGTGTTTTATGTGCAGATTAA 57.241 32.000 0.00 0.00 0.00 1.40
2933 3207 9.537192 AATGTAACAAGATGGCAATATTTCATG 57.463 29.630 0.00 0.00 0.00 3.07
2941 3215 5.149973 TGCAAATGTAACAAGATGGCAAT 57.850 34.783 0.00 0.00 0.00 3.56
2978 3252 9.313118 GGTTGTTGAACTAAAAATTCAGAACAT 57.687 29.630 0.00 0.00 37.38 2.71
3013 3288 0.693622 TCTTTGTGTTCCCCGGCATA 59.306 50.000 0.00 0.00 0.00 3.14
3014 3289 0.039618 ATCTTTGTGTTCCCCGGCAT 59.960 50.000 0.00 0.00 0.00 4.40
3018 3293 2.483014 TGGTATCTTTGTGTTCCCCG 57.517 50.000 0.00 0.00 0.00 5.73
3040 3315 1.202348 GTTTTGCTATGTGCCCAGGTC 59.798 52.381 0.00 0.00 42.00 3.85
3076 3355 4.400251 TCATGATCCTGCCAATGTTTCTTC 59.600 41.667 0.00 0.00 0.00 2.87
3094 4876 2.187100 TGTAGTGTGGGCATCTCATGA 58.813 47.619 0.00 0.00 0.00 3.07
3130 4912 2.257286 ATTGCCTGCTTTGCGCTACG 62.257 55.000 9.73 0.00 40.11 3.51
3136 4918 1.138247 CGGAGATTGCCTGCTTTGC 59.862 57.895 0.00 0.00 0.00 3.68
3166 4948 3.365265 GAGTTTGCTGGGCACGGG 61.365 66.667 0.00 0.00 38.71 5.28
3169 4951 0.249031 GTTGTGAGTTTGCTGGGCAC 60.249 55.000 0.00 0.00 38.71 5.01
3218 5000 3.084039 GAGTGGATTTTGCCTGATGTGA 58.916 45.455 0.00 0.00 0.00 3.58
3249 5031 2.697751 TCCAGAGCTGCTATTTCCTCTC 59.302 50.000 0.15 0.00 32.65 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.