Multiple sequence alignment - TraesCS5B01G026600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G026600 chr5B 100.000 7275 0 0 1 7275 25661241 25668515 0.000000e+00 13435.0
1 TraesCS5B01G026600 chr5B 89.460 389 35 3 5325 5710 25666505 25666890 3.050000e-133 486.0
2 TraesCS5B01G026600 chr5B 89.460 389 35 3 5265 5650 25666565 25666950 3.050000e-133 486.0
3 TraesCS5B01G026600 chr5B 87.048 332 34 4 5385 5710 25666505 25666833 4.150000e-97 366.0
4 TraesCS5B01G026600 chr5B 87.048 332 34 4 5265 5593 25666625 25666950 4.150000e-97 366.0
5 TraesCS5B01G026600 chr5B 83.333 156 23 3 2357 2510 25663533 25663687 2.740000e-29 141.0
6 TraesCS5B01G026600 chr5B 83.333 156 23 3 2293 2447 25663597 25663750 2.740000e-29 141.0
7 TraesCS5B01G026600 chr5B 90.217 92 2 2 2650 2741 25663810 25663894 5.970000e-21 113.0
8 TraesCS5B01G026600 chr5B 90.217 92 2 2 2570 2654 25663890 25663981 5.970000e-21 113.0
9 TraesCS5B01G026600 chr5D 94.206 1657 67 14 3952 5593 34443064 34444706 0.000000e+00 2501.0
10 TraesCS5B01G026600 chr5D 85.592 1985 158 46 484 2383 34439753 34441694 0.000000e+00 1964.0
11 TraesCS5B01G026600 chr5D 91.356 1180 59 23 5325 6497 34444375 34445518 0.000000e+00 1574.0
12 TraesCS5B01G026600 chr5D 88.780 1025 53 29 2650 3635 34441754 34442755 0.000000e+00 1199.0
13 TraesCS5B01G026600 chr5D 92.399 671 19 9 6626 7275 34445653 34446312 0.000000e+00 928.0
14 TraesCS5B01G026600 chr5D 91.379 406 29 2 5385 5784 34444375 34444780 1.070000e-152 551.0
15 TraesCS5B01G026600 chr5D 90.596 319 19 4 2344 2654 34441530 34441845 5.250000e-111 412.0
16 TraesCS5B01G026600 chr5D 87.778 270 27 3 5265 5531 34444435 34444701 1.970000e-80 311.0
17 TraesCS5B01G026600 chr5D 90.698 215 13 4 3627 3839 34442857 34443066 5.560000e-71 279.0
18 TraesCS5B01G026600 chr5D 85.806 155 19 2 2293 2447 34441543 34441694 2.100000e-35 161.0
19 TraesCS5B01G026600 chr5D 82.036 167 27 1 5547 5710 34444366 34444532 9.840000e-29 139.0
20 TraesCS5B01G026600 chr5A 92.126 1778 86 25 5514 7264 22984606 22986356 0.000000e+00 2459.0
21 TraesCS5B01G026600 chr5A 95.028 1408 49 9 4092 5488 22983213 22984610 0.000000e+00 2193.0
22 TraesCS5B01G026600 chr5A 87.446 1633 120 41 264 1832 22975499 22977110 0.000000e+00 1801.0
23 TraesCS5B01G026600 chr5A 88.368 1238 61 39 2650 3839 22981928 22983130 0.000000e+00 1411.0
24 TraesCS5B01G026600 chr5A 90.400 250 13 5 2413 2654 22981771 22982017 1.180000e-82 318.0
25 TraesCS5B01G026600 chr5A 85.030 167 22 1 5265 5431 22984447 22984610 4.510000e-37 167.0
26 TraesCS5B01G026600 chr5A 83.529 85 13 1 102 186 647494076 647494159 2.180000e-10 78.7
27 TraesCS5B01G026600 chr4B 97.458 118 3 0 3837 3954 653049678 653049561 1.240000e-47 202.0
28 TraesCS5B01G026600 chr3B 95.968 124 5 0 3831 3954 31105785 31105662 1.240000e-47 202.0
29 TraesCS5B01G026600 chr3B 94.488 127 7 0 3828 3954 167110146 167110020 5.760000e-46 196.0
30 TraesCS5B01G026600 chr2A 96.667 120 4 0 3835 3954 603855880 603855761 4.450000e-47 200.0
31 TraesCS5B01G026600 chr2B 94.531 128 7 0 3834 3961 653603135 653603262 1.600000e-46 198.0
32 TraesCS5B01G026600 chr2B 92.701 137 8 2 3835 3969 184790568 184790432 5.760000e-46 196.0
33 TraesCS5B01G026600 chr6B 95.868 121 5 0 3834 3954 164882914 164883034 5.760000e-46 196.0
34 TraesCS5B01G026600 chr7B 94.488 127 6 1 3837 3962 535690746 535690872 2.070000e-45 195.0
35 TraesCS5B01G026600 chr7B 79.433 141 23 5 102 239 122427066 122427203 2.160000e-15 95.3
36 TraesCS5B01G026600 chr7B 82.292 96 11 4 149 239 52514044 52513950 2.180000e-10 78.7
37 TraesCS5B01G026600 chr1B 93.798 129 8 0 3835 3963 575712996 575712868 2.070000e-45 195.0
38 TraesCS5B01G026600 chr3A 79.195 149 25 5 102 247 688452757 688452612 1.670000e-16 99.0
39 TraesCS5B01G026600 chr6A 80.315 127 20 5 102 225 171447235 171447359 2.800000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G026600 chr5B 25661241 25668515 7274 False 13435.000000 13435 100.000000 1 7275 1 chr5B.!!$F1 7274
1 TraesCS5B01G026600 chr5B 25663533 25666950 3417 False 276.500000 486 87.514500 2293 5710 8 chr5B.!!$F2 3417
2 TraesCS5B01G026600 chr5D 34439753 34446312 6559 False 910.818182 2501 89.147818 484 7275 11 chr5D.!!$F1 6791
3 TraesCS5B01G026600 chr5A 22975499 22977110 1611 False 1801.000000 1801 87.446000 264 1832 1 chr5A.!!$F1 1568
4 TraesCS5B01G026600 chr5A 22981771 22986356 4585 False 1309.600000 2459 90.190400 2413 7264 5 chr5A.!!$F3 4851

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.035739 TCCACTTAAACAGGGACCGC 59.964 55.0 0.00 0.0 0.00 5.68 F
148 149 0.037605 ACTTAAACAGGGACCGCGAG 60.038 55.0 8.23 0.0 0.00 5.03 F
1990 2079 0.034337 TGGCGAACCTGGTTACACTC 59.966 55.0 12.96 0.0 36.63 3.51 F
2267 2369 0.655733 CGGATGTGTTTATGGCGGAC 59.344 55.0 0.00 0.0 0.00 4.79 F
5760 6087 0.321996 GAAGCTCCTCCGGTGAGTTT 59.678 55.0 19.70 19.7 36.20 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1223 1264 0.100503 GCACAGCAACGGAACAAAGT 59.899 50.000 0.00 0.0 0.0 2.66 R
2063 2152 0.169230 TCGTGTTTGCAAAAGCGTGT 59.831 45.000 25.47 0.0 0.0 4.49 R
5760 6087 3.003173 CTGTCTTCGCCCCCTCCA 61.003 66.667 0.00 0.0 0.0 3.86 R
5787 6114 4.400961 GCTTGCTCGCTGGAGGGT 62.401 66.667 0.00 0.0 40.8 4.34 R
7241 7694 2.637383 GCGGAGATAGGTAGGCGGG 61.637 68.421 0.00 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.056125 GGAGCGTTGGCAAAGGGC 62.056 66.667 14.83 12.33 43.41 5.19
26 27 2.027460 GCAAAGGGCAACGGTGTG 59.973 61.111 0.66 0.00 43.97 3.82
27 28 2.027460 CAAAGGGCAACGGTGTGC 59.973 61.111 0.66 0.15 44.14 4.57
28 29 3.591835 AAAGGGCAACGGTGTGCG 61.592 61.111 0.66 0.00 45.91 5.34
34 35 4.230863 CAACGGTGTGCGCGTGTT 62.231 61.111 8.43 0.00 0.00 3.32
35 36 3.501548 AACGGTGTGCGCGTGTTT 61.502 55.556 8.43 0.00 0.00 2.83
36 37 3.726631 AACGGTGTGCGCGTGTTTG 62.727 57.895 8.43 0.00 0.00 2.93
37 38 4.230863 CGGTGTGCGCGTGTTTGT 62.231 61.111 8.43 0.00 0.00 2.83
38 39 2.650602 GGTGTGCGCGTGTTTGTG 60.651 61.111 8.43 0.00 0.00 3.33
39 40 3.311752 GTGTGCGCGTGTTTGTGC 61.312 61.111 8.43 0.00 45.41 4.57
40 41 3.504273 TGTGCGCGTGTTTGTGCT 61.504 55.556 8.43 0.00 45.42 4.40
41 42 2.174319 TGTGCGCGTGTTTGTGCTA 61.174 52.632 8.43 0.00 45.42 3.49
42 43 1.721133 GTGCGCGTGTTTGTGCTAC 60.721 57.895 8.43 0.00 45.42 3.58
43 44 1.885388 TGCGCGTGTTTGTGCTACT 60.885 52.632 8.43 0.00 45.42 2.57
44 45 1.438710 GCGCGTGTTTGTGCTACTG 60.439 57.895 8.43 0.00 42.01 2.74
45 46 1.204062 CGCGTGTTTGTGCTACTGG 59.796 57.895 0.00 0.00 0.00 4.00
46 47 1.218875 CGCGTGTTTGTGCTACTGGA 61.219 55.000 0.00 0.00 0.00 3.86
47 48 1.156736 GCGTGTTTGTGCTACTGGAT 58.843 50.000 0.00 0.00 0.00 3.41
48 49 2.343101 GCGTGTTTGTGCTACTGGATA 58.657 47.619 0.00 0.00 0.00 2.59
49 50 2.739913 GCGTGTTTGTGCTACTGGATAA 59.260 45.455 0.00 0.00 0.00 1.75
50 51 3.181520 GCGTGTTTGTGCTACTGGATAAG 60.182 47.826 0.00 0.00 0.00 1.73
51 52 4.242475 CGTGTTTGTGCTACTGGATAAGA 58.758 43.478 0.00 0.00 0.00 2.10
52 53 4.870426 CGTGTTTGTGCTACTGGATAAGAT 59.130 41.667 0.00 0.00 0.00 2.40
53 54 6.040247 CGTGTTTGTGCTACTGGATAAGATA 58.960 40.000 0.00 0.00 0.00 1.98
54 55 6.533723 CGTGTTTGTGCTACTGGATAAGATAA 59.466 38.462 0.00 0.00 0.00 1.75
55 56 7.064134 CGTGTTTGTGCTACTGGATAAGATAAA 59.936 37.037 0.00 0.00 0.00 1.40
56 57 8.175716 GTGTTTGTGCTACTGGATAAGATAAAC 58.824 37.037 0.00 0.00 0.00 2.01
57 58 7.880713 TGTTTGTGCTACTGGATAAGATAAACA 59.119 33.333 0.00 0.00 32.69 2.83
58 59 8.726988 GTTTGTGCTACTGGATAAGATAAACAA 58.273 33.333 0.00 0.00 0.00 2.83
59 60 8.856153 TTGTGCTACTGGATAAGATAAACAAA 57.144 30.769 0.00 0.00 0.00 2.83
60 61 8.492673 TGTGCTACTGGATAAGATAAACAAAG 57.507 34.615 0.00 0.00 0.00 2.77
61 62 7.552687 TGTGCTACTGGATAAGATAAACAAAGG 59.447 37.037 0.00 0.00 0.00 3.11
62 63 7.769044 GTGCTACTGGATAAGATAAACAAAGGA 59.231 37.037 0.00 0.00 0.00 3.36
63 64 7.987458 TGCTACTGGATAAGATAAACAAAGGAG 59.013 37.037 0.00 0.00 0.00 3.69
64 65 7.041712 GCTACTGGATAAGATAAACAAAGGAGC 60.042 40.741 0.00 0.00 32.36 4.70
65 66 5.817816 ACTGGATAAGATAAACAAAGGAGCG 59.182 40.000 0.00 0.00 0.00 5.03
66 67 4.574828 TGGATAAGATAAACAAAGGAGCGC 59.425 41.667 0.00 0.00 0.00 5.92
67 68 4.318831 GGATAAGATAAACAAAGGAGCGCG 60.319 45.833 0.00 0.00 0.00 6.86
68 69 1.369625 AGATAAACAAAGGAGCGCGG 58.630 50.000 8.83 0.00 0.00 6.46
69 70 0.377203 GATAAACAAAGGAGCGCGGG 59.623 55.000 8.83 0.00 0.00 6.13
70 71 1.654023 ATAAACAAAGGAGCGCGGGC 61.654 55.000 17.92 17.92 40.37 6.13
79 80 4.778143 AGCGCGGGCGGAATTCTT 62.778 61.111 19.46 0.00 46.35 2.52
80 81 2.893404 GCGCGGGCGGAATTCTTA 60.893 61.111 15.44 0.00 40.19 2.10
81 82 2.251642 GCGCGGGCGGAATTCTTAT 61.252 57.895 15.44 0.00 40.19 1.73
82 83 0.947180 GCGCGGGCGGAATTCTTATA 60.947 55.000 15.44 0.00 40.19 0.98
83 84 1.504359 CGCGGGCGGAATTCTTATAA 58.496 50.000 4.92 0.00 35.56 0.98
84 85 1.868498 CGCGGGCGGAATTCTTATAAA 59.132 47.619 4.92 0.00 35.56 1.40
85 86 2.288458 CGCGGGCGGAATTCTTATAAAA 59.712 45.455 4.92 0.00 35.56 1.52
86 87 3.058501 CGCGGGCGGAATTCTTATAAAAT 60.059 43.478 4.92 0.00 35.56 1.82
87 88 4.226761 GCGGGCGGAATTCTTATAAAATG 58.773 43.478 5.23 0.00 0.00 2.32
88 89 4.226761 CGGGCGGAATTCTTATAAAATGC 58.773 43.478 5.23 0.00 0.00 3.56
89 90 4.261405 CGGGCGGAATTCTTATAAAATGCA 60.261 41.667 5.23 0.00 0.00 3.96
90 91 5.596845 GGGCGGAATTCTTATAAAATGCAA 58.403 37.500 5.23 0.00 0.00 4.08
91 92 5.691754 GGGCGGAATTCTTATAAAATGCAAG 59.308 40.000 5.23 0.00 0.00 4.01
92 93 5.691754 GGCGGAATTCTTATAAAATGCAAGG 59.308 40.000 5.23 0.00 0.00 3.61
93 94 5.691754 GCGGAATTCTTATAAAATGCAAGGG 59.308 40.000 5.23 0.00 0.00 3.95
94 95 6.215845 CGGAATTCTTATAAAATGCAAGGGG 58.784 40.000 5.23 0.00 0.00 4.79
95 96 6.183360 CGGAATTCTTATAAAATGCAAGGGGT 60.183 38.462 5.23 0.00 0.00 4.95
96 97 7.564793 GGAATTCTTATAAAATGCAAGGGGTT 58.435 34.615 5.23 0.00 0.00 4.11
97 98 8.700973 GGAATTCTTATAAAATGCAAGGGGTTA 58.299 33.333 5.23 0.00 0.00 2.85
102 103 9.883142 TCTTATAAAATGCAAGGGGTTAATTTG 57.117 29.630 0.00 0.00 0.00 2.32
103 104 8.499403 TTATAAAATGCAAGGGGTTAATTTGC 57.501 30.769 0.00 1.75 45.53 3.68
108 109 4.481930 GCAAGGGGTTAATTTGCAAAAC 57.518 40.909 17.19 9.93 44.88 2.43
109 110 3.252215 GCAAGGGGTTAATTTGCAAAACC 59.748 43.478 17.19 18.36 44.88 3.27
110 111 3.394674 AGGGGTTAATTTGCAAAACCG 57.605 42.857 17.19 0.00 42.98 4.44
111 112 2.966516 AGGGGTTAATTTGCAAAACCGA 59.033 40.909 17.19 0.00 42.98 4.69
112 113 3.006430 AGGGGTTAATTTGCAAAACCGAG 59.994 43.478 17.19 0.00 42.98 4.63
113 114 3.243941 GGGGTTAATTTGCAAAACCGAGT 60.244 43.478 17.19 0.00 42.98 4.18
114 115 3.985279 GGGTTAATTTGCAAAACCGAGTC 59.015 43.478 17.19 3.18 42.98 3.36
115 116 4.500035 GGGTTAATTTGCAAAACCGAGTCA 60.500 41.667 17.19 0.00 42.98 3.41
116 117 5.227152 GGTTAATTTGCAAAACCGAGTCAT 58.773 37.500 17.19 0.00 33.85 3.06
117 118 5.694458 GGTTAATTTGCAAAACCGAGTCATT 59.306 36.000 17.19 5.08 33.85 2.57
118 119 6.864165 GGTTAATTTGCAAAACCGAGTCATTA 59.136 34.615 17.19 4.07 33.85 1.90
119 120 7.544217 GGTTAATTTGCAAAACCGAGTCATTAT 59.456 33.333 17.19 0.00 33.85 1.28
120 121 8.583765 GTTAATTTGCAAAACCGAGTCATTATC 58.416 33.333 17.19 2.90 0.00 1.75
121 122 4.695217 TTGCAAAACCGAGTCATTATCC 57.305 40.909 0.00 0.00 0.00 2.59
122 123 3.013921 TGCAAAACCGAGTCATTATCCC 58.986 45.455 0.00 0.00 0.00 3.85
123 124 3.013921 GCAAAACCGAGTCATTATCCCA 58.986 45.455 0.00 0.00 0.00 4.37
124 125 3.065371 GCAAAACCGAGTCATTATCCCAG 59.935 47.826 0.00 0.00 0.00 4.45
125 126 4.513442 CAAAACCGAGTCATTATCCCAGA 58.487 43.478 0.00 0.00 0.00 3.86
126 127 5.126067 CAAAACCGAGTCATTATCCCAGAT 58.874 41.667 0.00 0.00 0.00 2.90
127 128 4.608948 AACCGAGTCATTATCCCAGATC 57.391 45.455 0.00 0.00 0.00 2.75
128 129 2.900546 ACCGAGTCATTATCCCAGATCC 59.099 50.000 0.00 0.00 0.00 3.36
129 130 2.899900 CCGAGTCATTATCCCAGATCCA 59.100 50.000 0.00 0.00 0.00 3.41
130 131 3.306364 CCGAGTCATTATCCCAGATCCAC 60.306 52.174 0.00 0.00 0.00 4.02
131 132 3.576118 CGAGTCATTATCCCAGATCCACT 59.424 47.826 0.00 0.00 0.00 4.00
132 133 4.039730 CGAGTCATTATCCCAGATCCACTT 59.960 45.833 0.00 0.00 0.00 3.16
133 134 5.243954 CGAGTCATTATCCCAGATCCACTTA 59.756 44.000 0.00 0.00 0.00 2.24
134 135 6.239317 CGAGTCATTATCCCAGATCCACTTAA 60.239 42.308 0.00 0.00 0.00 1.85
135 136 7.451731 AGTCATTATCCCAGATCCACTTAAA 57.548 36.000 0.00 0.00 0.00 1.52
136 137 7.283329 AGTCATTATCCCAGATCCACTTAAAC 58.717 38.462 0.00 0.00 0.00 2.01
137 138 7.054124 GTCATTATCCCAGATCCACTTAAACA 58.946 38.462 0.00 0.00 0.00 2.83
138 139 7.227512 GTCATTATCCCAGATCCACTTAAACAG 59.772 40.741 0.00 0.00 0.00 3.16
139 140 4.510167 ATCCCAGATCCACTTAAACAGG 57.490 45.455 0.00 0.00 0.00 4.00
140 141 2.576191 TCCCAGATCCACTTAAACAGGG 59.424 50.000 0.00 0.00 35.09 4.45
141 142 2.576191 CCCAGATCCACTTAAACAGGGA 59.424 50.000 0.00 0.00 35.81 4.20
142 143 3.610911 CCAGATCCACTTAAACAGGGAC 58.389 50.000 0.00 0.00 31.04 4.46
143 144 3.610911 CAGATCCACTTAAACAGGGACC 58.389 50.000 0.00 0.00 31.04 4.46
144 145 2.236395 AGATCCACTTAAACAGGGACCG 59.764 50.000 0.00 0.00 31.04 4.79
145 146 0.035739 TCCACTTAAACAGGGACCGC 59.964 55.000 0.00 0.00 0.00 5.68
146 147 1.296056 CCACTTAAACAGGGACCGCG 61.296 60.000 0.00 0.00 0.00 6.46
147 148 0.320073 CACTTAAACAGGGACCGCGA 60.320 55.000 8.23 0.00 0.00 5.87
148 149 0.037605 ACTTAAACAGGGACCGCGAG 60.038 55.000 8.23 0.00 0.00 5.03
149 150 0.037605 CTTAAACAGGGACCGCGAGT 60.038 55.000 8.23 3.14 0.00 4.18
150 151 0.393820 TTAAACAGGGACCGCGAGTT 59.606 50.000 8.23 0.00 0.00 3.01
151 152 0.037975 TAAACAGGGACCGCGAGTTC 60.038 55.000 8.23 1.90 0.00 3.01
152 153 2.035237 AAACAGGGACCGCGAGTTCA 62.035 55.000 8.23 0.00 0.00 3.18
153 154 2.035237 AACAGGGACCGCGAGTTCAA 62.035 55.000 8.23 0.00 0.00 2.69
154 155 1.079127 CAGGGACCGCGAGTTCAAT 60.079 57.895 8.23 0.00 0.00 2.57
155 156 0.673644 CAGGGACCGCGAGTTCAATT 60.674 55.000 8.23 0.00 0.00 2.32
156 157 0.899720 AGGGACCGCGAGTTCAATTA 59.100 50.000 8.23 0.00 0.00 1.40
157 158 1.485066 AGGGACCGCGAGTTCAATTAT 59.515 47.619 8.23 0.00 0.00 1.28
158 159 1.865340 GGGACCGCGAGTTCAATTATC 59.135 52.381 8.23 0.00 0.00 1.75
159 160 2.546778 GGACCGCGAGTTCAATTATCA 58.453 47.619 8.23 0.00 0.00 2.15
160 161 2.933906 GGACCGCGAGTTCAATTATCAA 59.066 45.455 8.23 0.00 0.00 2.57
161 162 3.372822 GGACCGCGAGTTCAATTATCAAA 59.627 43.478 8.23 0.00 0.00 2.69
162 163 4.142773 GGACCGCGAGTTCAATTATCAAAA 60.143 41.667 8.23 0.00 0.00 2.44
163 164 5.365403 ACCGCGAGTTCAATTATCAAAAA 57.635 34.783 8.23 0.00 0.00 1.94
164 165 5.151389 ACCGCGAGTTCAATTATCAAAAAC 58.849 37.500 8.23 0.00 0.00 2.43
165 166 4.557301 CCGCGAGTTCAATTATCAAAAACC 59.443 41.667 8.23 0.00 0.00 3.27
166 167 5.150683 CGCGAGTTCAATTATCAAAAACCA 58.849 37.500 0.00 0.00 0.00 3.67
167 168 5.059221 CGCGAGTTCAATTATCAAAAACCAC 59.941 40.000 0.00 0.00 0.00 4.16
168 169 5.918011 GCGAGTTCAATTATCAAAAACCACA 59.082 36.000 0.00 0.00 0.00 4.17
169 170 6.419413 GCGAGTTCAATTATCAAAAACCACAA 59.581 34.615 0.00 0.00 0.00 3.33
170 171 7.358352 GCGAGTTCAATTATCAAAAACCACAAG 60.358 37.037 0.00 0.00 0.00 3.16
171 172 7.114811 CGAGTTCAATTATCAAAAACCACAAGG 59.885 37.037 0.00 0.00 42.21 3.61
172 173 8.017418 AGTTCAATTATCAAAAACCACAAGGA 57.983 30.769 0.00 0.00 38.69 3.36
173 174 7.926018 AGTTCAATTATCAAAAACCACAAGGAC 59.074 33.333 0.00 0.00 38.69 3.85
174 175 7.595819 TCAATTATCAAAAACCACAAGGACT 57.404 32.000 0.00 0.00 38.69 3.85
175 176 8.017418 TCAATTATCAAAAACCACAAGGACTT 57.983 30.769 0.00 0.00 38.69 3.01
176 177 8.482128 TCAATTATCAAAAACCACAAGGACTTT 58.518 29.630 0.00 0.00 38.69 2.66
177 178 9.108284 CAATTATCAAAAACCACAAGGACTTTT 57.892 29.630 0.00 0.00 38.69 2.27
178 179 8.661352 ATTATCAAAAACCACAAGGACTTTTG 57.339 30.769 14.59 14.59 44.01 2.44
179 180 5.476091 TCAAAAACCACAAGGACTTTTGT 57.524 34.783 17.53 0.16 43.61 2.83
188 189 5.799681 ACAAGGACTTTTGTGCAAAAATG 57.200 34.783 12.48 12.48 43.65 2.32
189 190 5.244755 ACAAGGACTTTTGTGCAAAAATGT 58.755 33.333 18.14 18.14 43.65 2.71
190 191 5.351189 ACAAGGACTTTTGTGCAAAAATGTC 59.649 36.000 28.13 28.13 43.65 3.06
191 192 5.083533 AGGACTTTTGTGCAAAAATGTCA 57.916 34.783 32.80 10.06 43.65 3.58
192 193 4.869861 AGGACTTTTGTGCAAAAATGTCAC 59.130 37.500 32.80 25.52 43.65 3.67
193 194 4.259770 GGACTTTTGTGCAAAAATGTCACG 60.260 41.667 32.80 14.25 42.03 4.35
194 195 4.489810 ACTTTTGTGCAAAAATGTCACGA 58.510 34.783 13.66 0.00 39.49 4.35
195 196 4.326009 ACTTTTGTGCAAAAATGTCACGAC 59.674 37.500 13.66 0.00 39.49 4.34
196 197 2.098215 TGTGCAAAAATGTCACGACG 57.902 45.000 0.00 0.00 33.69 5.12
197 198 1.268285 TGTGCAAAAATGTCACGACGG 60.268 47.619 0.00 0.00 33.69 4.79
198 199 1.018148 TGCAAAAATGTCACGACGGT 58.982 45.000 0.00 0.00 0.00 4.83
199 200 1.268285 TGCAAAAATGTCACGACGGTG 60.268 47.619 0.00 0.00 45.78 4.94
200 201 1.924191 GCAAAAATGTCACGACGGTGG 60.924 52.381 0.00 0.00 44.50 4.61
201 202 1.600013 CAAAAATGTCACGACGGTGGA 59.400 47.619 0.00 0.00 44.50 4.02
202 203 1.223187 AAAATGTCACGACGGTGGAC 58.777 50.000 0.00 4.75 44.50 4.02
203 204 0.105224 AAATGTCACGACGGTGGACA 59.895 50.000 17.48 17.48 44.50 4.02
204 205 0.319555 AATGTCACGACGGTGGACAG 60.320 55.000 19.13 0.00 44.50 3.51
205 206 1.176619 ATGTCACGACGGTGGACAGA 61.177 55.000 19.13 3.40 44.50 3.41
206 207 1.361271 GTCACGACGGTGGACAGAA 59.639 57.895 0.00 0.00 44.50 3.02
207 208 0.663568 GTCACGACGGTGGACAGAAG 60.664 60.000 0.00 0.00 44.50 2.85
208 209 2.022129 CACGACGGTGGACAGAAGC 61.022 63.158 0.00 0.00 40.58 3.86
209 210 2.338620 CGACGGTGGACAGAAGCA 59.661 61.111 0.00 0.00 0.00 3.91
210 211 1.300620 CGACGGTGGACAGAAGCAA 60.301 57.895 0.00 0.00 0.00 3.91
211 212 0.670546 CGACGGTGGACAGAAGCAAT 60.671 55.000 0.00 0.00 0.00 3.56
212 213 1.403647 CGACGGTGGACAGAAGCAATA 60.404 52.381 0.00 0.00 0.00 1.90
213 214 2.738643 CGACGGTGGACAGAAGCAATAT 60.739 50.000 0.00 0.00 0.00 1.28
214 215 2.609459 GACGGTGGACAGAAGCAATATG 59.391 50.000 0.00 0.00 0.00 1.78
215 216 2.027192 ACGGTGGACAGAAGCAATATGT 60.027 45.455 0.00 0.00 35.82 2.29
216 217 2.352651 CGGTGGACAGAAGCAATATGTG 59.647 50.000 0.00 0.00 32.49 3.21
311 313 4.072839 AGGTTTTCTAGGTAAGCTGTTGC 58.927 43.478 8.14 0.00 40.05 4.17
332 334 3.682377 GCAGTTGCTCTAAGTTCCTCTTC 59.318 47.826 0.00 0.00 36.53 2.87
333 335 4.562552 GCAGTTGCTCTAAGTTCCTCTTCT 60.563 45.833 0.00 0.00 36.53 2.85
354 356 9.436957 TCTTCTAGGATGAATGAAAACTTGTAC 57.563 33.333 0.00 0.00 0.00 2.90
364 366 8.836413 TGAATGAAAACTTGTACAACTAGGAAG 58.164 33.333 3.59 0.00 0.00 3.46
409 417 7.596995 GCACATGTTACTTTATTTTTACCAGCA 59.403 33.333 0.00 0.00 0.00 4.41
410 418 8.911662 CACATGTTACTTTATTTTTACCAGCAC 58.088 33.333 0.00 0.00 0.00 4.40
411 419 8.634444 ACATGTTACTTTATTTTTACCAGCACA 58.366 29.630 0.00 0.00 0.00 4.57
413 421 9.855021 ATGTTACTTTATTTTTACCAGCACATC 57.145 29.630 0.00 0.00 0.00 3.06
417 425 0.519519 TTTTTACCAGCACATCGGCG 59.480 50.000 0.00 0.00 39.27 6.46
456 464 3.822192 CATGGCAGCAGCACGCAT 61.822 61.111 2.65 0.00 46.13 4.73
473 481 1.001974 GCATGGACACGCATCCCTATA 59.998 52.381 3.22 0.00 38.06 1.31
620 649 3.276846 GCCGTTTGCACCACGTCT 61.277 61.111 14.77 0.00 40.77 4.18
621 650 2.935955 CCGTTTGCACCACGTCTC 59.064 61.111 14.77 0.00 35.81 3.36
626 655 0.534203 TTTGCACCACGTCTCCTTCC 60.534 55.000 0.00 0.00 0.00 3.46
718 747 2.964925 GTCCACGCGACTGCACAA 60.965 61.111 15.93 0.00 42.97 3.33
720 749 2.967076 CCACGCGACTGCACAACT 60.967 61.111 15.93 0.00 42.97 3.16
779 808 2.668280 GCTTTGTCCTGACCGACGC 61.668 63.158 0.00 0.00 35.40 5.19
809 838 1.218316 CCAGACCGCTTACCTCACC 59.782 63.158 0.00 0.00 0.00 4.02
822 851 1.268283 CCTCACCACCCTCCCTTCTC 61.268 65.000 0.00 0.00 0.00 2.87
844 873 4.115199 ACAGAAGGGCCCGGCATC 62.115 66.667 18.44 13.79 0.00 3.91
856 885 1.069765 CGGCATCGGGATAGCAGTT 59.930 57.895 0.00 0.00 0.00 3.16
859 888 0.394565 GCATCGGGATAGCAGTTCCT 59.605 55.000 0.00 0.00 33.53 3.36
864 893 1.501582 GGGATAGCAGTTCCTGTCCT 58.498 55.000 5.20 0.00 41.38 3.85
878 907 1.248785 TGTCCTAGCCGTCAGTGACC 61.249 60.000 17.57 4.58 0.00 4.02
889 918 2.203451 AGTGACCTCGTGGGACGT 60.203 61.111 8.63 0.00 43.14 4.34
937 966 1.203065 GGTTTATCTACCGAACGGCG 58.797 55.000 13.32 4.80 39.32 6.46
1188 1229 2.029844 GCCTCGTCGAGCTGCTTTT 61.030 57.895 17.02 0.00 0.00 2.27
1210 1251 1.137675 CCTTACCTACCGGCTAACACC 59.862 57.143 0.00 0.00 0.00 4.16
1211 1252 1.137675 CTTACCTACCGGCTAACACCC 59.862 57.143 0.00 0.00 0.00 4.61
1216 1257 4.796495 CCGGCTAACACCCAGGGC 62.796 72.222 4.91 0.00 0.00 5.19
1223 1264 1.481901 TAACACCCAGGGCGCTTGTA 61.482 55.000 4.91 0.00 0.00 2.41
1235 1276 1.003223 GCGCTTGTACTTTGTTCCGTT 60.003 47.619 0.00 0.00 0.00 4.44
1281 1323 1.287425 GGCGGTCTAAGTCGGAATTG 58.713 55.000 0.20 0.00 0.00 2.32
1370 1412 1.009997 TCCGGGGTCTAGGGTTCTAA 58.990 55.000 0.00 0.00 0.00 2.10
1408 1450 3.699134 CTAGGGTTTGGGCGCCTCC 62.699 68.421 28.56 21.70 0.00 4.30
1484 1526 1.065928 CTCGTGGTGGTATCTCGGC 59.934 63.158 0.00 0.00 0.00 5.54
1523 1565 1.596477 GGCTAGATTGGAGCTGCGG 60.596 63.158 0.00 0.00 39.98 5.69
1575 1617 2.550606 GCGAAATGGTTGGTGAACAGTA 59.449 45.455 0.00 0.00 33.27 2.74
1579 1621 0.533308 TGGTTGGTGAACAGTACCGC 60.533 55.000 0.00 0.00 41.18 5.68
1582 1624 1.697082 TTGGTGAACAGTACCGCCCA 61.697 55.000 0.00 0.00 41.18 5.36
1588 1630 0.250597 AACAGTACCGCCCACTTTCC 60.251 55.000 0.00 0.00 0.00 3.13
1609 1651 1.525077 TCTGTTGGTGTTGGGCGTC 60.525 57.895 0.00 0.00 0.00 5.19
1739 1802 2.194201 CTGGCTAGGAAAACGGGAAA 57.806 50.000 0.00 0.00 0.00 3.13
1740 1803 2.723273 CTGGCTAGGAAAACGGGAAAT 58.277 47.619 0.00 0.00 0.00 2.17
1742 1805 2.823154 TGGCTAGGAAAACGGGAAATTG 59.177 45.455 0.00 0.00 0.00 2.32
1743 1806 2.165641 GGCTAGGAAAACGGGAAATTGG 59.834 50.000 0.00 0.00 0.00 3.16
1745 1808 3.699538 GCTAGGAAAACGGGAAATTGGAT 59.300 43.478 0.00 0.00 0.00 3.41
1746 1809 4.159693 GCTAGGAAAACGGGAAATTGGATT 59.840 41.667 0.00 0.00 0.00 3.01
1749 1812 4.220602 AGGAAAACGGGAAATTGGATTCTG 59.779 41.667 0.00 0.00 0.00 3.02
1751 1814 2.899303 ACGGGAAATTGGATTCTGGT 57.101 45.000 0.00 0.00 0.00 4.00
1753 1816 2.024414 CGGGAAATTGGATTCTGGTCC 58.976 52.381 0.00 0.00 38.81 4.46
1754 1817 2.620367 CGGGAAATTGGATTCTGGTCCA 60.620 50.000 0.00 0.00 46.28 4.02
1795 1874 1.180456 TGCTGCACTTTGTGGGATGG 61.180 55.000 0.00 0.00 33.64 3.51
1797 1876 0.251297 CTGCACTTTGTGGGATGGGA 60.251 55.000 0.00 0.00 33.64 4.37
1798 1877 0.251297 TGCACTTTGTGGGATGGGAG 60.251 55.000 0.00 0.00 33.64 4.30
1799 1878 0.251341 GCACTTTGTGGGATGGGAGT 60.251 55.000 0.00 0.00 33.64 3.85
1800 1879 1.004277 GCACTTTGTGGGATGGGAGTA 59.996 52.381 0.00 0.00 33.64 2.59
1824 1903 3.906660 CCGTCTGGCTTCAAGTGTA 57.093 52.632 0.00 0.00 0.00 2.90
1832 1911 3.153919 TGGCTTCAAGTGTACCCATTTC 58.846 45.455 0.00 0.00 0.00 2.17
1842 1921 4.160252 AGTGTACCCATTTCAATTCCATGC 59.840 41.667 0.00 0.00 0.00 4.06
1843 1922 4.160252 GTGTACCCATTTCAATTCCATGCT 59.840 41.667 0.00 0.00 0.00 3.79
1881 1970 6.500910 GTTTTAGTTGGTTGAGTTTACCTGG 58.499 40.000 0.00 0.00 36.60 4.45
1886 1975 4.081322 TGGTTGAGTTTACCTGGAGAAC 57.919 45.455 0.00 4.77 36.60 3.01
1913 2002 1.935199 GCATTTGCAGTTTTGTGCTGT 59.065 42.857 0.00 0.00 44.32 4.40
1915 2004 3.786161 GCATTTGCAGTTTTGTGCTGTTG 60.786 43.478 0.00 0.00 44.32 3.33
1917 2006 0.531657 TGCAGTTTTGTGCTGTTGCT 59.468 45.000 0.00 0.00 44.32 3.91
1939 2028 3.328382 TTAGTTGGATTCAGTGTCCCG 57.672 47.619 0.00 0.00 34.76 5.14
1948 2037 4.095932 GGATTCAGTGTCCCGATTTTAACC 59.904 45.833 0.00 0.00 0.00 2.85
1949 2038 4.360951 TTCAGTGTCCCGATTTTAACCT 57.639 40.909 0.00 0.00 0.00 3.50
1963 2052 7.391786 CGATTTTAACCTGTAGTTGATTCGAG 58.608 38.462 0.00 0.00 39.67 4.04
1965 2054 2.674796 ACCTGTAGTTGATTCGAGGC 57.325 50.000 0.00 0.00 0.00 4.70
1974 2063 0.732571 TGATTCGAGGCGATTTTGGC 59.267 50.000 0.00 0.00 35.23 4.52
1990 2079 0.034337 TGGCGAACCTGGTTACACTC 59.966 55.000 12.96 0.00 36.63 3.51
1994 2083 2.805657 GCGAACCTGGTTACACTCTGTT 60.806 50.000 12.96 0.00 0.00 3.16
2029 2118 2.972625 TGCTGTAGTTAGACATGGCAC 58.027 47.619 0.00 0.00 28.69 5.01
2041 2130 1.133823 ACATGGCACTTTGTCAGGACA 60.134 47.619 0.00 0.00 35.56 4.02
2063 2152 5.822519 ACAAATTGCTTCAACTGAGTCAGTA 59.177 36.000 25.71 8.97 44.62 2.74
2066 2155 3.717707 TGCTTCAACTGAGTCAGTACAC 58.282 45.455 25.71 13.88 44.62 2.90
2148 2239 1.425066 TCTCCTGTTTGCTGGGAATGT 59.575 47.619 0.00 0.00 34.83 2.71
2149 2240 2.158475 TCTCCTGTTTGCTGGGAATGTT 60.158 45.455 0.00 0.00 34.83 2.71
2162 2264 5.567423 GCTGGGAATGTTATTTGAGTGCTTT 60.567 40.000 0.00 0.00 0.00 3.51
2188 2290 2.837532 TGGCTTTTTCATGGCCTTTC 57.162 45.000 3.32 0.00 45.45 2.62
2199 2301 6.764308 TTCATGGCCTTTCTGATTTTCTAG 57.236 37.500 3.32 0.00 0.00 2.43
2211 2313 3.073798 TGATTTTCTAGGGTTGCACCAGA 59.926 43.478 7.49 0.95 41.02 3.86
2223 2325 2.564771 TGCACCAGAAAGTCTCAACAG 58.435 47.619 0.00 0.00 0.00 3.16
2228 2330 3.910627 ACCAGAAAGTCTCAACAGGGTAT 59.089 43.478 0.00 0.00 0.00 2.73
2229 2331 5.046591 CACCAGAAAGTCTCAACAGGGTATA 60.047 44.000 0.00 0.00 0.00 1.47
2230 2332 5.726793 ACCAGAAAGTCTCAACAGGGTATAT 59.273 40.000 0.00 0.00 0.00 0.86
2255 2357 5.109210 TGTCTTAGTTCATTAGCGGATGTG 58.891 41.667 2.91 0.00 0.00 3.21
2266 2368 1.092921 GCGGATGTGTTTATGGCGGA 61.093 55.000 0.00 0.00 0.00 5.54
2267 2369 0.655733 CGGATGTGTTTATGGCGGAC 59.344 55.000 0.00 0.00 0.00 4.79
5760 6087 0.321996 GAAGCTCCTCCGGTGAGTTT 59.678 55.000 19.70 19.70 36.20 2.66
5787 6114 2.093106 GGCGAAGACAGAGGAAGTAGA 58.907 52.381 0.00 0.00 31.66 2.59
5893 6220 3.211963 AAATCAGATGCCGCCGCC 61.212 61.111 0.00 0.00 0.00 6.13
6001 6328 4.357279 ACCTGAAGCAGCTGCCCC 62.357 66.667 34.39 25.31 43.38 5.80
6098 6425 1.180029 TTAGCCAGTCTGACGGTACC 58.820 55.000 16.20 0.16 0.00 3.34
6198 6525 1.217916 CATACATGTACCCCACCCCA 58.782 55.000 7.96 0.00 0.00 4.96
6199 6526 1.133915 CATACATGTACCCCACCCCAC 60.134 57.143 7.96 0.00 0.00 4.61
6200 6527 0.915387 TACATGTACCCCACCCCACC 60.915 60.000 0.08 0.00 0.00 4.61
6201 6528 2.615929 ATGTACCCCACCCCACCC 60.616 66.667 0.00 0.00 0.00 4.61
6280 6607 3.261580 TGTCTGTTTGTCTGTGTCTGTG 58.738 45.455 0.00 0.00 0.00 3.66
6281 6608 3.262420 GTCTGTTTGTCTGTGTCTGTGT 58.738 45.455 0.00 0.00 0.00 3.72
6298 6625 3.601435 TGTGTTTATCATGTACCCGTGG 58.399 45.455 0.00 0.00 0.00 4.94
6348 6677 4.576463 CCCTCTGTATGTTGCTGTTTATCC 59.424 45.833 0.00 0.00 0.00 2.59
6376 6705 8.472413 CAATGAATAATGATGAGGGTTTCTGTT 58.528 33.333 0.00 0.00 0.00 3.16
6385 6714 3.265995 TGAGGGTTTCTGTTTATCCTCCC 59.734 47.826 0.00 0.00 39.83 4.30
6437 6766 2.708051 TGAATTCTCTCAAGCTGCCAG 58.292 47.619 7.05 0.00 0.00 4.85
6491 6820 9.032624 AGACTGTATAAGGTGTGTATGTAGTTT 57.967 33.333 0.00 0.00 0.00 2.66
6507 6927 9.662947 GTATGTAGTTTAAGTAGATGGTTTGGT 57.337 33.333 0.42 0.00 0.00 3.67
6516 6936 1.203038 AGATGGTTTGGTGATGTGCCA 60.203 47.619 0.00 0.00 0.00 4.92
6583 7003 1.545582 CGCCCTCATCACCAAAACATT 59.454 47.619 0.00 0.00 0.00 2.71
6584 7004 2.752354 CGCCCTCATCACCAAAACATTA 59.248 45.455 0.00 0.00 0.00 1.90
6624 7044 4.127171 CGATTTTCTGGATACCCACGAAT 58.873 43.478 0.00 0.00 37.58 3.34
6697 7117 4.789095 CGAGAGTTTCGGAACAAAAGAA 57.211 40.909 9.76 0.00 45.54 2.52
6698 7118 4.762809 CGAGAGTTTCGGAACAAAAGAAG 58.237 43.478 9.76 0.00 45.54 2.85
6699 7119 4.506654 CGAGAGTTTCGGAACAAAAGAAGA 59.493 41.667 9.76 0.00 45.54 2.87
7079 7520 0.107654 AGGAAGTAGGCAATGGCGAC 60.108 55.000 11.80 11.80 42.47 5.19
7207 7660 3.386237 GGAGGTGAGCTGAGCCGT 61.386 66.667 0.00 0.00 0.00 5.68
7241 7694 2.050077 GCCAGGCAAAGTCAACGC 60.050 61.111 6.55 0.00 0.00 4.84
7246 7699 4.700365 GCAAAGTCAACGCCCGCC 62.700 66.667 0.00 0.00 0.00 6.13
7249 7702 1.670083 AAAGTCAACGCCCGCCTAC 60.670 57.895 0.00 0.00 0.00 3.18
7265 7718 2.234908 GCCTACCTATCTCCGCATCAAT 59.765 50.000 0.00 0.00 0.00 2.57
7266 7719 3.677424 GCCTACCTATCTCCGCATCAATC 60.677 52.174 0.00 0.00 0.00 2.67
7268 7721 4.021104 CCTACCTATCTCCGCATCAATCAA 60.021 45.833 0.00 0.00 0.00 2.57
7269 7722 3.733337 ACCTATCTCCGCATCAATCAAC 58.267 45.455 0.00 0.00 0.00 3.18
7270 7723 3.389329 ACCTATCTCCGCATCAATCAACT 59.611 43.478 0.00 0.00 0.00 3.16
7274 7727 6.483307 CCTATCTCCGCATCAATCAACTAAAA 59.517 38.462 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.056125 GCCCTTTGCCAACGCTCC 62.056 66.667 0.00 0.00 35.36 4.70
1 2 2.855514 TTGCCCTTTGCCAACGCTC 61.856 57.895 0.00 0.00 40.16 5.03
2 3 2.837291 TTGCCCTTTGCCAACGCT 60.837 55.556 0.00 0.00 40.16 5.07
3 4 2.661537 GTTGCCCTTTGCCAACGC 60.662 61.111 0.00 0.00 40.16 4.84
4 5 2.354539 CGTTGCCCTTTGCCAACG 60.355 61.111 10.80 10.80 43.00 4.10
5 6 2.028925 CCGTTGCCCTTTGCCAAC 59.971 61.111 0.00 0.00 40.16 3.77
6 7 2.443016 ACCGTTGCCCTTTGCCAA 60.443 55.556 0.00 0.00 40.16 4.52
7 8 3.222855 CACCGTTGCCCTTTGCCA 61.223 61.111 0.00 0.00 40.16 4.92
8 9 3.223589 ACACCGTTGCCCTTTGCC 61.224 61.111 0.00 0.00 40.16 4.52
9 10 2.027460 CACACCGTTGCCCTTTGC 59.973 61.111 0.00 0.00 41.77 3.68
10 11 2.027460 GCACACCGTTGCCCTTTG 59.973 61.111 0.00 0.00 36.42 2.77
11 12 3.591835 CGCACACCGTTGCCCTTT 61.592 61.111 0.00 0.00 39.53 3.11
17 18 3.726631 AAACACGCGCACACCGTTG 62.727 57.895 5.73 0.00 36.69 4.10
18 19 3.501548 AAACACGCGCACACCGTT 61.502 55.556 5.73 0.00 36.69 4.44
19 20 4.230863 CAAACACGCGCACACCGT 62.231 61.111 5.73 0.00 39.91 4.83
20 21 4.230863 ACAAACACGCGCACACCG 62.231 61.111 5.73 0.00 40.75 4.94
21 22 2.650602 CACAAACACGCGCACACC 60.651 61.111 5.73 0.00 0.00 4.16
22 23 2.368131 TAGCACAAACACGCGCACAC 62.368 55.000 5.73 0.00 0.00 3.82
23 24 2.174319 TAGCACAAACACGCGCACA 61.174 52.632 5.73 0.00 0.00 4.57
24 25 1.721133 GTAGCACAAACACGCGCAC 60.721 57.895 5.73 0.00 0.00 5.34
25 26 1.885388 AGTAGCACAAACACGCGCA 60.885 52.632 5.73 0.00 0.00 6.09
26 27 1.438710 CAGTAGCACAAACACGCGC 60.439 57.895 5.73 0.00 0.00 6.86
27 28 1.204062 CCAGTAGCACAAACACGCG 59.796 57.895 3.53 3.53 0.00 6.01
28 29 1.156736 ATCCAGTAGCACAAACACGC 58.843 50.000 0.00 0.00 0.00 5.34
29 30 4.242475 TCTTATCCAGTAGCACAAACACG 58.758 43.478 0.00 0.00 0.00 4.49
30 31 7.843490 TTATCTTATCCAGTAGCACAAACAC 57.157 36.000 0.00 0.00 0.00 3.32
31 32 7.880713 TGTTTATCTTATCCAGTAGCACAAACA 59.119 33.333 0.00 0.00 0.00 2.83
32 33 8.263940 TGTTTATCTTATCCAGTAGCACAAAC 57.736 34.615 0.00 0.00 0.00 2.93
33 34 8.856153 TTGTTTATCTTATCCAGTAGCACAAA 57.144 30.769 0.00 0.00 0.00 2.83
34 35 8.856153 TTTGTTTATCTTATCCAGTAGCACAA 57.144 30.769 0.00 0.00 0.00 3.33
35 36 7.552687 CCTTTGTTTATCTTATCCAGTAGCACA 59.447 37.037 0.00 0.00 0.00 4.57
36 37 7.769044 TCCTTTGTTTATCTTATCCAGTAGCAC 59.231 37.037 0.00 0.00 0.00 4.40
37 38 7.857456 TCCTTTGTTTATCTTATCCAGTAGCA 58.143 34.615 0.00 0.00 0.00 3.49
38 39 7.041712 GCTCCTTTGTTTATCTTATCCAGTAGC 60.042 40.741 0.00 0.00 0.00 3.58
39 40 7.169982 CGCTCCTTTGTTTATCTTATCCAGTAG 59.830 40.741 0.00 0.00 0.00 2.57
40 41 6.984474 CGCTCCTTTGTTTATCTTATCCAGTA 59.016 38.462 0.00 0.00 0.00 2.74
41 42 5.817816 CGCTCCTTTGTTTATCTTATCCAGT 59.182 40.000 0.00 0.00 0.00 4.00
42 43 5.277538 GCGCTCCTTTGTTTATCTTATCCAG 60.278 44.000 0.00 0.00 0.00 3.86
43 44 4.574828 GCGCTCCTTTGTTTATCTTATCCA 59.425 41.667 0.00 0.00 0.00 3.41
44 45 4.318831 CGCGCTCCTTTGTTTATCTTATCC 60.319 45.833 5.56 0.00 0.00 2.59
45 46 4.318831 CCGCGCTCCTTTGTTTATCTTATC 60.319 45.833 5.56 0.00 0.00 1.75
46 47 3.560068 CCGCGCTCCTTTGTTTATCTTAT 59.440 43.478 5.56 0.00 0.00 1.73
47 48 2.933906 CCGCGCTCCTTTGTTTATCTTA 59.066 45.455 5.56 0.00 0.00 2.10
48 49 1.737793 CCGCGCTCCTTTGTTTATCTT 59.262 47.619 5.56 0.00 0.00 2.40
49 50 1.369625 CCGCGCTCCTTTGTTTATCT 58.630 50.000 5.56 0.00 0.00 1.98
50 51 0.377203 CCCGCGCTCCTTTGTTTATC 59.623 55.000 5.56 0.00 0.00 1.75
51 52 1.654023 GCCCGCGCTCCTTTGTTTAT 61.654 55.000 5.56 0.00 0.00 1.40
52 53 2.329614 GCCCGCGCTCCTTTGTTTA 61.330 57.895 5.56 0.00 0.00 2.01
53 54 3.670377 GCCCGCGCTCCTTTGTTT 61.670 61.111 5.56 0.00 0.00 2.83
62 63 2.660258 ATAAGAATTCCGCCCGCGCT 62.660 55.000 5.56 0.00 38.24 5.92
63 64 0.947180 TATAAGAATTCCGCCCGCGC 60.947 55.000 0.00 0.00 38.24 6.86
64 65 1.504359 TTATAAGAATTCCGCCCGCG 58.496 50.000 0.00 0.00 39.44 6.46
65 66 3.974871 TTTTATAAGAATTCCGCCCGC 57.025 42.857 0.65 0.00 0.00 6.13
66 67 4.226761 GCATTTTATAAGAATTCCGCCCG 58.773 43.478 0.65 0.00 0.00 6.13
67 68 5.195001 TGCATTTTATAAGAATTCCGCCC 57.805 39.130 0.65 0.00 0.00 6.13
68 69 5.691754 CCTTGCATTTTATAAGAATTCCGCC 59.308 40.000 0.65 0.00 0.00 6.13
69 70 5.691754 CCCTTGCATTTTATAAGAATTCCGC 59.308 40.000 0.65 0.00 0.00 5.54
70 71 6.183360 ACCCCTTGCATTTTATAAGAATTCCG 60.183 38.462 0.65 0.00 0.00 4.30
71 72 7.124573 ACCCCTTGCATTTTATAAGAATTCC 57.875 36.000 0.65 0.00 0.00 3.01
76 77 9.883142 CAAATTAACCCCTTGCATTTTATAAGA 57.117 29.630 0.00 0.00 0.00 2.10
77 78 8.611757 GCAAATTAACCCCTTGCATTTTATAAG 58.388 33.333 1.34 0.00 43.89 1.73
78 79 8.499403 GCAAATTAACCCCTTGCATTTTATAA 57.501 30.769 1.34 0.00 43.89 0.98
87 88 3.252215 GGTTTTGCAAATTAACCCCTTGC 59.748 43.478 17.32 0.00 44.54 4.01
88 89 3.496507 CGGTTTTGCAAATTAACCCCTTG 59.503 43.478 20.66 7.53 38.44 3.61
89 90 3.388350 TCGGTTTTGCAAATTAACCCCTT 59.612 39.130 20.66 0.00 38.44 3.95
90 91 2.966516 TCGGTTTTGCAAATTAACCCCT 59.033 40.909 20.66 0.00 38.44 4.79
91 92 3.243941 ACTCGGTTTTGCAAATTAACCCC 60.244 43.478 20.66 10.58 38.44 4.95
92 93 3.985008 ACTCGGTTTTGCAAATTAACCC 58.015 40.909 20.66 11.97 38.44 4.11
93 94 4.612943 TGACTCGGTTTTGCAAATTAACC 58.387 39.130 17.92 17.92 38.33 2.85
94 95 6.763303 AATGACTCGGTTTTGCAAATTAAC 57.237 33.333 13.65 8.33 0.00 2.01
95 96 7.757624 GGATAATGACTCGGTTTTGCAAATTAA 59.242 33.333 13.65 0.00 0.00 1.40
96 97 7.254852 GGATAATGACTCGGTTTTGCAAATTA 58.745 34.615 13.65 5.68 0.00 1.40
97 98 6.099341 GGATAATGACTCGGTTTTGCAAATT 58.901 36.000 13.65 3.47 0.00 1.82
98 99 5.394115 GGGATAATGACTCGGTTTTGCAAAT 60.394 40.000 13.65 0.00 0.00 2.32
99 100 4.082463 GGGATAATGACTCGGTTTTGCAAA 60.082 41.667 8.05 8.05 0.00 3.68
100 101 3.442273 GGGATAATGACTCGGTTTTGCAA 59.558 43.478 0.00 0.00 0.00 4.08
101 102 3.013921 GGGATAATGACTCGGTTTTGCA 58.986 45.455 0.00 0.00 0.00 4.08
102 103 3.013921 TGGGATAATGACTCGGTTTTGC 58.986 45.455 0.00 0.00 0.00 3.68
103 104 4.513442 TCTGGGATAATGACTCGGTTTTG 58.487 43.478 0.00 0.00 0.00 2.44
104 105 4.837093 TCTGGGATAATGACTCGGTTTT 57.163 40.909 0.00 0.00 0.00 2.43
105 106 4.202367 GGATCTGGGATAATGACTCGGTTT 60.202 45.833 0.00 0.00 0.00 3.27
106 107 3.325135 GGATCTGGGATAATGACTCGGTT 59.675 47.826 0.00 0.00 0.00 4.44
107 108 2.900546 GGATCTGGGATAATGACTCGGT 59.099 50.000 0.00 0.00 0.00 4.69
108 109 2.899900 TGGATCTGGGATAATGACTCGG 59.100 50.000 0.00 0.00 0.00 4.63
109 110 3.576118 AGTGGATCTGGGATAATGACTCG 59.424 47.826 0.00 0.00 0.00 4.18
110 111 5.559148 AAGTGGATCTGGGATAATGACTC 57.441 43.478 0.00 0.00 0.00 3.36
111 112 7.092444 TGTTTAAGTGGATCTGGGATAATGACT 60.092 37.037 0.00 0.00 0.00 3.41
112 113 7.054124 TGTTTAAGTGGATCTGGGATAATGAC 58.946 38.462 0.00 0.00 0.00 3.06
113 114 7.206789 TGTTTAAGTGGATCTGGGATAATGA 57.793 36.000 0.00 0.00 0.00 2.57
114 115 6.488006 CCTGTTTAAGTGGATCTGGGATAATG 59.512 42.308 0.00 0.00 0.00 1.90
115 116 6.410853 CCCTGTTTAAGTGGATCTGGGATAAT 60.411 42.308 0.00 0.00 38.84 1.28
116 117 5.104109 CCCTGTTTAAGTGGATCTGGGATAA 60.104 44.000 0.00 0.00 38.84 1.75
117 118 4.412199 CCCTGTTTAAGTGGATCTGGGATA 59.588 45.833 0.00 0.00 38.84 2.59
118 119 3.203040 CCCTGTTTAAGTGGATCTGGGAT 59.797 47.826 0.00 0.00 38.84 3.85
119 120 2.576191 CCCTGTTTAAGTGGATCTGGGA 59.424 50.000 0.00 0.00 38.84 4.37
120 121 2.576191 TCCCTGTTTAAGTGGATCTGGG 59.424 50.000 0.00 0.00 38.20 4.45
121 122 3.610911 GTCCCTGTTTAAGTGGATCTGG 58.389 50.000 0.00 0.00 30.70 3.86
122 123 3.610911 GGTCCCTGTTTAAGTGGATCTG 58.389 50.000 0.00 0.00 30.70 2.90
123 124 2.236395 CGGTCCCTGTTTAAGTGGATCT 59.764 50.000 0.00 0.00 30.70 2.75
124 125 2.629051 CGGTCCCTGTTTAAGTGGATC 58.371 52.381 0.00 0.00 30.70 3.36
125 126 1.339727 GCGGTCCCTGTTTAAGTGGAT 60.340 52.381 0.00 0.00 30.70 3.41
126 127 0.035739 GCGGTCCCTGTTTAAGTGGA 59.964 55.000 0.00 0.00 0.00 4.02
127 128 1.296056 CGCGGTCCCTGTTTAAGTGG 61.296 60.000 0.00 0.00 0.00 4.00
128 129 0.320073 TCGCGGTCCCTGTTTAAGTG 60.320 55.000 6.13 0.00 0.00 3.16
129 130 0.037605 CTCGCGGTCCCTGTTTAAGT 60.038 55.000 6.13 0.00 0.00 2.24
130 131 0.037605 ACTCGCGGTCCCTGTTTAAG 60.038 55.000 6.13 0.00 0.00 1.85
131 132 0.393820 AACTCGCGGTCCCTGTTTAA 59.606 50.000 6.13 0.00 0.00 1.52
132 133 0.037975 GAACTCGCGGTCCCTGTTTA 60.038 55.000 6.13 0.00 0.00 2.01
133 134 1.301479 GAACTCGCGGTCCCTGTTT 60.301 57.895 6.13 0.00 0.00 2.83
134 135 2.035237 TTGAACTCGCGGTCCCTGTT 62.035 55.000 6.13 2.30 0.00 3.16
135 136 1.827399 ATTGAACTCGCGGTCCCTGT 61.827 55.000 6.13 0.00 0.00 4.00
136 137 0.673644 AATTGAACTCGCGGTCCCTG 60.674 55.000 6.13 0.00 0.00 4.45
137 138 0.899720 TAATTGAACTCGCGGTCCCT 59.100 50.000 6.13 0.00 0.00 4.20
138 139 1.865340 GATAATTGAACTCGCGGTCCC 59.135 52.381 6.13 0.03 0.00 4.46
139 140 2.546778 TGATAATTGAACTCGCGGTCC 58.453 47.619 6.13 0.00 0.00 4.46
140 141 4.593597 TTTGATAATTGAACTCGCGGTC 57.406 40.909 6.13 1.95 0.00 4.79
141 142 5.151389 GTTTTTGATAATTGAACTCGCGGT 58.849 37.500 6.13 0.00 0.00 5.68
142 143 4.557301 GGTTTTTGATAATTGAACTCGCGG 59.443 41.667 6.13 0.00 0.00 6.46
143 144 5.059221 GTGGTTTTTGATAATTGAACTCGCG 59.941 40.000 0.00 0.00 0.00 5.87
144 145 5.918011 TGTGGTTTTTGATAATTGAACTCGC 59.082 36.000 0.00 0.00 0.00 5.03
145 146 7.114811 CCTTGTGGTTTTTGATAATTGAACTCG 59.885 37.037 0.00 0.00 0.00 4.18
146 147 8.141268 TCCTTGTGGTTTTTGATAATTGAACTC 58.859 33.333 0.00 0.00 34.23 3.01
147 148 7.926018 GTCCTTGTGGTTTTTGATAATTGAACT 59.074 33.333 0.00 0.00 34.23 3.01
148 149 7.926018 AGTCCTTGTGGTTTTTGATAATTGAAC 59.074 33.333 0.00 0.00 34.23 3.18
149 150 8.017418 AGTCCTTGTGGTTTTTGATAATTGAA 57.983 30.769 0.00 0.00 34.23 2.69
150 151 7.595819 AGTCCTTGTGGTTTTTGATAATTGA 57.404 32.000 0.00 0.00 34.23 2.57
151 152 8.661352 AAAGTCCTTGTGGTTTTTGATAATTG 57.339 30.769 0.00 0.00 34.23 2.32
152 153 9.108284 CAAAAGTCCTTGTGGTTTTTGATAATT 57.892 29.630 15.33 0.00 43.29 1.40
153 154 8.264347 ACAAAAGTCCTTGTGGTTTTTGATAAT 58.736 29.630 21.51 7.71 43.29 1.28
154 155 7.616313 ACAAAAGTCCTTGTGGTTTTTGATAA 58.384 30.769 21.51 0.00 43.29 1.75
155 156 7.176589 ACAAAAGTCCTTGTGGTTTTTGATA 57.823 32.000 21.51 0.00 43.29 2.15
156 157 6.048732 ACAAAAGTCCTTGTGGTTTTTGAT 57.951 33.333 21.51 11.36 43.29 2.57
157 158 5.476091 ACAAAAGTCCTTGTGGTTTTTGA 57.524 34.783 21.51 0.00 43.29 2.69
166 167 5.244755 ACATTTTTGCACAAAAGTCCTTGT 58.755 33.333 1.52 0.00 40.83 3.16
167 168 5.350914 TGACATTTTTGCACAAAAGTCCTTG 59.649 36.000 23.45 10.69 40.83 3.61
168 169 5.351189 GTGACATTTTTGCACAAAAGTCCTT 59.649 36.000 23.45 0.00 40.83 3.36
169 170 4.869861 GTGACATTTTTGCACAAAAGTCCT 59.130 37.500 23.45 0.00 40.83 3.85
170 171 4.259770 CGTGACATTTTTGCACAAAAGTCC 60.260 41.667 23.45 16.24 40.83 3.85
171 172 4.560819 TCGTGACATTTTTGCACAAAAGTC 59.439 37.500 21.00 21.00 40.83 3.01
172 173 4.326009 GTCGTGACATTTTTGCACAAAAGT 59.674 37.500 5.94 5.94 40.83 2.66
173 174 4.546081 CGTCGTGACATTTTTGCACAAAAG 60.546 41.667 1.52 0.32 40.83 2.27
174 175 3.301906 CGTCGTGACATTTTTGCACAAAA 59.698 39.130 1.52 4.47 38.40 2.44
175 176 2.848887 CGTCGTGACATTTTTGCACAAA 59.151 40.909 0.00 0.00 32.96 2.83
176 177 2.445316 CGTCGTGACATTTTTGCACAA 58.555 42.857 0.41 0.00 32.96 3.33
177 178 1.268285 CCGTCGTGACATTTTTGCACA 60.268 47.619 0.41 0.00 32.96 4.57
178 179 1.268335 ACCGTCGTGACATTTTTGCAC 60.268 47.619 0.41 0.00 0.00 4.57
179 180 1.018148 ACCGTCGTGACATTTTTGCA 58.982 45.000 0.41 0.00 0.00 4.08
180 181 1.394697 CACCGTCGTGACATTTTTGC 58.605 50.000 0.41 0.00 43.14 3.68
181 182 1.600013 TCCACCGTCGTGACATTTTTG 59.400 47.619 0.41 0.00 43.14 2.44
182 183 1.600485 GTCCACCGTCGTGACATTTTT 59.400 47.619 0.41 0.00 43.14 1.94
183 184 1.223187 GTCCACCGTCGTGACATTTT 58.777 50.000 0.41 0.00 43.14 1.82
184 185 0.105224 TGTCCACCGTCGTGACATTT 59.895 50.000 0.41 0.00 43.14 2.32
185 186 0.319555 CTGTCCACCGTCGTGACATT 60.320 55.000 9.13 0.00 43.14 2.71
186 187 1.176619 TCTGTCCACCGTCGTGACAT 61.177 55.000 9.13 0.00 43.14 3.06
187 188 1.385756 TTCTGTCCACCGTCGTGACA 61.386 55.000 8.57 8.57 43.14 3.58
188 189 0.663568 CTTCTGTCCACCGTCGTGAC 60.664 60.000 0.00 0.00 43.14 3.67
189 190 1.658114 CTTCTGTCCACCGTCGTGA 59.342 57.895 0.00 0.00 43.14 4.35
190 191 2.022129 GCTTCTGTCCACCGTCGTG 61.022 63.158 0.00 0.00 39.91 4.35
191 192 2.023414 TTGCTTCTGTCCACCGTCGT 62.023 55.000 0.00 0.00 0.00 4.34
192 193 0.670546 ATTGCTTCTGTCCACCGTCG 60.671 55.000 0.00 0.00 0.00 5.12
193 194 2.380084 TATTGCTTCTGTCCACCGTC 57.620 50.000 0.00 0.00 0.00 4.79
194 195 2.027192 ACATATTGCTTCTGTCCACCGT 60.027 45.455 0.00 0.00 0.00 4.83
195 196 2.352651 CACATATTGCTTCTGTCCACCG 59.647 50.000 0.00 0.00 0.00 4.94
284 285 6.362248 ACAGCTTACCTAGAAAACCTTTTCA 58.638 36.000 12.02 0.00 46.81 2.69
285 286 6.879276 ACAGCTTACCTAGAAAACCTTTTC 57.121 37.500 2.76 2.76 45.22 2.29
286 287 6.461092 GCAACAGCTTACCTAGAAAACCTTTT 60.461 38.462 0.00 0.00 0.00 2.27
287 288 5.009710 GCAACAGCTTACCTAGAAAACCTTT 59.990 40.000 0.00 0.00 0.00 3.11
290 291 3.818773 TGCAACAGCTTACCTAGAAAACC 59.181 43.478 0.00 0.00 0.00 3.27
291 292 4.515567 ACTGCAACAGCTTACCTAGAAAAC 59.484 41.667 0.00 0.00 34.37 2.43
296 298 2.160417 GCAACTGCAACAGCTTACCTAG 59.840 50.000 0.00 0.00 41.59 3.02
301 303 2.260844 AGAGCAACTGCAACAGCTTA 57.739 45.000 4.22 0.00 45.16 3.09
311 313 5.146010 AGAAGAGGAACTTAGAGCAACTG 57.854 43.478 0.00 0.00 41.55 3.16
332 334 9.003658 AGTTGTACAAGTTTTCATTCATCCTAG 57.996 33.333 8.98 0.00 0.00 3.02
333 335 8.918202 AGTTGTACAAGTTTTCATTCATCCTA 57.082 30.769 8.98 0.00 0.00 2.94
337 339 8.918202 TCCTAGTTGTACAAGTTTTCATTCAT 57.082 30.769 20.60 0.00 0.00 2.57
340 342 8.974060 TCTTCCTAGTTGTACAAGTTTTCATT 57.026 30.769 20.60 0.00 0.00 2.57
342 344 8.795842 TTTCTTCCTAGTTGTACAAGTTTTCA 57.204 30.769 20.60 2.55 0.00 2.69
345 347 8.630037 CCATTTTCTTCCTAGTTGTACAAGTTT 58.370 33.333 20.60 6.82 0.00 2.66
346 348 7.230712 CCCATTTTCTTCCTAGTTGTACAAGTT 59.769 37.037 20.60 9.24 0.00 2.66
347 349 6.715264 CCCATTTTCTTCCTAGTTGTACAAGT 59.285 38.462 19.44 19.44 0.00 3.16
348 350 6.715264 ACCCATTTTCTTCCTAGTTGTACAAG 59.285 38.462 8.98 0.00 0.00 3.16
354 356 4.280677 TGCAACCCATTTTCTTCCTAGTTG 59.719 41.667 0.00 0.00 37.12 3.16
386 390 9.638239 ATGTGCTGGTAAAAATAAAGTAACATG 57.362 29.630 0.00 0.00 0.00 3.21
392 396 5.621329 GCCGATGTGCTGGTAAAAATAAAGT 60.621 40.000 0.00 0.00 0.00 2.66
395 399 3.181505 CGCCGATGTGCTGGTAAAAATAA 60.182 43.478 0.00 0.00 0.00 1.40
396 400 2.353269 CGCCGATGTGCTGGTAAAAATA 59.647 45.455 0.00 0.00 0.00 1.40
397 401 1.132262 CGCCGATGTGCTGGTAAAAAT 59.868 47.619 0.00 0.00 0.00 1.82
398 402 0.519519 CGCCGATGTGCTGGTAAAAA 59.480 50.000 0.00 0.00 0.00 1.94
409 417 4.412933 CGTGGATAACGCCGATGT 57.587 55.556 0.00 0.00 46.99 3.06
451 459 2.819595 GGATGCGTGTCCATGCGT 60.820 61.111 5.92 5.92 45.93 5.24
455 463 2.703536 TGTTATAGGGATGCGTGTCCAT 59.296 45.455 9.85 5.74 40.17 3.41
456 464 2.112190 TGTTATAGGGATGCGTGTCCA 58.888 47.619 9.85 0.00 40.17 4.02
620 649 1.246056 CGGACCGTGTGTAGGAAGGA 61.246 60.000 5.48 0.00 0.00 3.36
621 650 1.214589 CGGACCGTGTGTAGGAAGG 59.785 63.158 5.48 0.00 0.00 3.46
757 786 2.317609 CGGTCAGGACAAAGCGGTG 61.318 63.158 1.41 0.00 33.05 4.94
809 838 0.610687 GTCAGTGAGAAGGGAGGGTG 59.389 60.000 0.00 0.00 0.00 4.61
822 851 2.046892 CGGGCCCTTCTGTCAGTG 60.047 66.667 22.43 0.00 0.00 3.66
856 885 0.965866 CACTGACGGCTAGGACAGGA 60.966 60.000 0.00 0.00 34.45 3.86
859 888 1.248785 GGTCACTGACGGCTAGGACA 61.249 60.000 3.04 0.00 32.65 4.02
864 893 1.303074 ACGAGGTCACTGACGGCTA 60.303 57.895 3.04 0.00 32.65 3.93
912 941 1.766494 TCGGTAGATAAACCCTGCGA 58.234 50.000 0.00 0.00 36.03 5.10
960 989 9.250246 GGATTTGGGGATTTTTATATCGGAATA 57.750 33.333 0.00 0.00 0.00 1.75
961 990 7.180229 GGGATTTGGGGATTTTTATATCGGAAT 59.820 37.037 0.00 0.00 0.00 3.01
962 991 6.495526 GGGATTTGGGGATTTTTATATCGGAA 59.504 38.462 0.00 0.00 0.00 4.30
963 992 6.014012 GGGATTTGGGGATTTTTATATCGGA 58.986 40.000 0.00 0.00 0.00 4.55
964 993 5.186992 GGGGATTTGGGGATTTTTATATCGG 59.813 44.000 0.00 0.00 0.00 4.18
1173 1214 0.601558 AGGTAAAAGCAGCTCGACGA 59.398 50.000 0.00 0.00 0.00 4.20
1188 1229 3.023832 GTGTTAGCCGGTAGGTAAGGTA 58.976 50.000 1.90 0.00 39.06 3.08
1210 1251 0.889186 ACAAAGTACAAGCGCCCTGG 60.889 55.000 2.29 0.00 0.00 4.45
1211 1252 0.951558 AACAAAGTACAAGCGCCCTG 59.048 50.000 2.29 4.31 0.00 4.45
1216 1257 2.635444 CAACGGAACAAAGTACAAGCG 58.365 47.619 0.00 0.00 0.00 4.68
1223 1264 0.100503 GCACAGCAACGGAACAAAGT 59.899 50.000 0.00 0.00 0.00 2.66
1235 1276 1.207339 CGCAATTCGAAGCACAGCA 59.793 52.632 3.35 0.00 41.67 4.41
1370 1412 5.604650 CCTAGAATCTGACCCCTAAATCTGT 59.395 44.000 0.00 0.00 0.00 3.41
1484 1526 3.162154 GGAGGGGCTCCGGTAAGG 61.162 72.222 0.00 0.00 41.08 2.69
1503 1545 1.596477 GCAGCTCCAATCTAGCCCG 60.596 63.158 0.00 0.00 41.02 6.13
1505 1547 1.596477 CCGCAGCTCCAATCTAGCC 60.596 63.158 0.00 0.00 41.02 3.93
1523 1565 3.127533 GGCGCATCCACACAGACC 61.128 66.667 10.83 0.00 34.01 3.85
1553 1595 0.671251 TGTTCACCAACCATTTCGCC 59.329 50.000 0.00 0.00 0.00 5.54
1575 1617 4.324991 GACCGGAAAGTGGGCGGT 62.325 66.667 9.46 0.00 35.48 5.68
1579 1621 0.889186 CCAACAGACCGGAAAGTGGG 60.889 60.000 9.46 6.17 0.00 4.61
1582 1624 0.544697 ACACCAACAGACCGGAAAGT 59.455 50.000 9.46 0.00 0.00 2.66
1588 1630 2.551912 GCCCAACACCAACAGACCG 61.552 63.158 0.00 0.00 0.00 4.79
1619 1661 2.824041 CAAGCCCAATCGACCCCG 60.824 66.667 0.00 0.00 37.07 5.73
1707 1770 0.326143 TAGCCAGGCCAGACCACATA 60.326 55.000 8.22 0.00 43.14 2.29
1708 1771 1.616327 TAGCCAGGCCAGACCACAT 60.616 57.895 8.22 0.00 43.14 3.21
1732 1795 2.620627 GGACCAGAATCCAATTTCCCGT 60.621 50.000 0.00 0.00 38.77 5.28
1733 1796 2.024414 GGACCAGAATCCAATTTCCCG 58.976 52.381 0.00 0.00 38.77 5.14
1742 1805 1.177401 GGCAAACTGGACCAGAATCC 58.823 55.000 28.56 17.44 39.45 3.01
1743 1806 1.815003 CAGGCAAACTGGACCAGAATC 59.185 52.381 28.56 12.79 43.70 2.52
1745 1808 3.419793 CAGGCAAACTGGACCAGAA 57.580 52.632 28.56 0.00 43.70 3.02
1824 1903 3.443052 TGAGCATGGAATTGAAATGGGT 58.557 40.909 0.00 0.00 0.00 4.51
1832 1911 5.068234 ACAAACAGATGAGCATGGAATTG 57.932 39.130 0.00 0.00 0.00 2.32
1842 1921 7.069569 CCAACTAAAACGTACAAACAGATGAG 58.930 38.462 0.00 0.00 0.00 2.90
1843 1922 6.539464 ACCAACTAAAACGTACAAACAGATGA 59.461 34.615 0.00 0.00 0.00 2.92
1913 2002 5.009610 GGACACTGAATCCAACTAAAAGCAA 59.990 40.000 0.00 0.00 36.15 3.91
1915 2004 4.082733 GGGACACTGAATCCAACTAAAAGC 60.083 45.833 4.74 0.00 38.06 3.51
1917 2006 4.069304 CGGGACACTGAATCCAACTAAAA 58.931 43.478 4.74 0.00 38.06 1.52
1939 2028 7.676572 GCCTCGAATCAACTACAGGTTAAAATC 60.677 40.741 0.00 0.00 36.23 2.17
1948 2037 2.561733 TCGCCTCGAATCAACTACAG 57.438 50.000 0.00 0.00 31.06 2.74
1949 2038 3.520290 AATCGCCTCGAATCAACTACA 57.480 42.857 0.00 0.00 39.99 2.74
1963 2052 1.154035 CAGGTTCGCCAAAATCGCC 60.154 57.895 0.00 0.00 40.60 5.54
1965 2054 0.596082 AACCAGGTTCGCCAAAATCG 59.404 50.000 0.00 0.00 40.60 3.34
1974 2063 2.814280 ACAGAGTGTAACCAGGTTCG 57.186 50.000 8.57 0.00 37.80 3.95
2000 2089 8.946085 CCATGTCTAACTACAGCAAAATAAGAA 58.054 33.333 0.00 0.00 31.70 2.52
2001 2090 7.065803 GCCATGTCTAACTACAGCAAAATAAGA 59.934 37.037 0.00 0.00 31.70 2.10
2002 2091 7.148255 TGCCATGTCTAACTACAGCAAAATAAG 60.148 37.037 0.00 0.00 30.35 1.73
2016 2105 3.189287 CCTGACAAAGTGCCATGTCTAAC 59.811 47.826 7.35 0.00 44.86 2.34
2017 2106 3.072330 TCCTGACAAAGTGCCATGTCTAA 59.928 43.478 7.35 0.00 44.86 2.10
2041 2130 5.822519 TGTACTGACTCAGTTGAAGCAATTT 59.177 36.000 16.89 0.00 42.59 1.82
2042 2131 5.237344 GTGTACTGACTCAGTTGAAGCAATT 59.763 40.000 16.89 0.00 42.59 2.32
2063 2152 0.169230 TCGTGTTTGCAAAAGCGTGT 59.831 45.000 25.47 0.00 0.00 4.49
2066 2155 1.476074 ACATCGTGTTTGCAAAAGCG 58.524 45.000 22.67 22.67 0.00 4.68
2077 2166 0.662619 CTGTTGTGCCAACATCGTGT 59.337 50.000 17.45 0.00 35.83 4.49
2080 2169 1.081242 GCCTGTTGTGCCAACATCG 60.081 57.895 17.45 12.88 35.83 3.84
2137 2228 3.193267 GCACTCAAATAACATTCCCAGCA 59.807 43.478 0.00 0.00 0.00 4.41
2148 2239 5.782047 CCAATGGACAAAGCACTCAAATAA 58.218 37.500 0.00 0.00 0.00 1.40
2149 2240 4.321899 GCCAATGGACAAAGCACTCAAATA 60.322 41.667 2.05 0.00 0.00 1.40
2162 2264 2.289569 GCCATGAAAAAGCCAATGGACA 60.290 45.455 2.05 0.00 0.00 4.02
2211 2313 8.554490 AGACATATATACCCTGTTGAGACTTT 57.446 34.615 0.00 0.00 0.00 2.66
2223 2325 9.517609 CGCTAATGAACTAAGACATATATACCC 57.482 37.037 0.00 0.00 0.00 3.69
2228 2330 8.803235 ACATCCGCTAATGAACTAAGACATATA 58.197 33.333 2.55 0.00 0.00 0.86
2229 2331 7.600375 CACATCCGCTAATGAACTAAGACATAT 59.400 37.037 2.55 0.00 0.00 1.78
2230 2332 6.923508 CACATCCGCTAATGAACTAAGACATA 59.076 38.462 2.55 0.00 0.00 2.29
2255 2357 1.653151 GGAGTCTGTCCGCCATAAAC 58.347 55.000 0.00 0.00 34.84 2.01
2266 2368 1.831652 CGGAAGCTTGGGGAGTCTGT 61.832 60.000 2.10 0.00 0.00 3.41
2267 2369 1.078848 CGGAAGCTTGGGGAGTCTG 60.079 63.158 2.10 0.00 0.00 3.51
5760 6087 3.003173 CTGTCTTCGCCCCCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
5787 6114 4.400961 GCTTGCTCGCTGGAGGGT 62.401 66.667 0.00 0.00 40.80 4.34
5893 6220 4.598257 CCAGGTTGGCTGTCTACG 57.402 61.111 0.00 0.00 0.00 3.51
6098 6425 2.882927 TTACCGGTTCTCATCATCCG 57.117 50.000 15.04 0.00 42.22 4.18
6198 6525 2.138179 CGATATGGTGGGGTCGGGT 61.138 63.158 0.00 0.00 0.00 5.28
6199 6526 2.095978 GACGATATGGTGGGGTCGGG 62.096 65.000 0.00 0.00 38.33 5.14
6200 6527 1.113517 AGACGATATGGTGGGGTCGG 61.114 60.000 0.00 0.00 38.33 4.79
6201 6528 0.032130 CAGACGATATGGTGGGGTCG 59.968 60.000 0.00 0.00 39.78 4.79
6202 6529 1.120530 ACAGACGATATGGTGGGGTC 58.879 55.000 0.00 0.00 0.00 4.46
6280 6607 3.602483 ACACCACGGGTACATGATAAAC 58.398 45.455 0.00 0.00 32.11 2.01
6281 6608 3.985019 ACACCACGGGTACATGATAAA 57.015 42.857 0.00 0.00 32.11 1.40
6298 6625 6.854496 TTCAGGTCTAACAACACAATACAC 57.146 37.500 0.00 0.00 0.00 2.90
6348 6677 6.552350 AGAAACCCTCATCATTATTCATTGGG 59.448 38.462 0.00 0.00 38.13 4.12
6385 6714 3.128242 GCCTGATGAATGAACTGTTCCAG 59.872 47.826 17.26 14.45 37.52 3.86
6465 6794 8.591114 AACTACATACACACCTTATACAGTCT 57.409 34.615 0.00 0.00 0.00 3.24
6491 6820 4.941263 GCACATCACCAAACCATCTACTTA 59.059 41.667 0.00 0.00 0.00 2.24
6507 6927 2.353903 GCACCATCAAATTGGCACATCA 60.354 45.455 0.00 0.00 40.68 3.07
6545 6965 3.731653 GAGCCAGCCGGAGAGAAGC 62.732 68.421 5.05 0.00 0.00 3.86
6546 6966 2.498726 GAGCCAGCCGGAGAGAAG 59.501 66.667 5.05 0.00 0.00 2.85
6547 6967 3.452786 CGAGCCAGCCGGAGAGAA 61.453 66.667 5.05 0.00 0.00 2.87
6583 7003 4.642445 TCGGTCGCATTCTAAATCACTA 57.358 40.909 0.00 0.00 0.00 2.74
6584 7004 3.520290 TCGGTCGCATTCTAAATCACT 57.480 42.857 0.00 0.00 0.00 3.41
7079 7520 4.829518 TCAGCGTCGCGGTCATCG 62.830 66.667 16.84 5.27 42.76 3.84
7181 7622 3.827898 CTCACCTCCCTCGCCGTC 61.828 72.222 0.00 0.00 0.00 4.79
7190 7637 3.386237 ACGGCTCAGCTCACCTCC 61.386 66.667 0.00 0.00 0.00 4.30
7241 7694 2.637383 GCGGAGATAGGTAGGCGGG 61.637 68.421 0.00 0.00 0.00 6.13
7246 7699 4.790765 TGATTGATGCGGAGATAGGTAG 57.209 45.455 0.00 0.00 0.00 3.18
7249 7702 4.000331 AGTTGATTGATGCGGAGATAGG 58.000 45.455 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.