Multiple sequence alignment - TraesCS5B01G026400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G026400 chr5B 100.000 6223 0 0 1 6223 25272792 25266570 0.000000e+00 11492.0
1 TraesCS5B01G026400 chr5B 79.849 1062 192 18 3956 5003 551501874 551502927 0.000000e+00 756.0
2 TraesCS5B01G026400 chr5B 92.620 271 20 0 1 271 122465700 122465970 2.100000e-104 390.0
3 TraesCS5B01G026400 chr5B 91.791 268 22 0 1 268 673081759 673081492 2.120000e-99 374.0
4 TraesCS5B01G026400 chr5D 93.207 5403 215 63 649 5979 34080775 34075453 0.000000e+00 7805.0
5 TraesCS5B01G026400 chr5D 79.830 1061 194 16 3956 5003 451674443 451675496 0.000000e+00 756.0
6 TraesCS5B01G026400 chr5D 87.452 263 13 8 5978 6223 34075391 34075132 1.020000e-72 285.0
7 TraesCS5B01G026400 chr5D 79.755 326 23 18 346 631 34081084 34080762 4.920000e-46 196.0
8 TraesCS5B01G026400 chr5A 92.507 5512 238 76 649 6025 22714813 22720284 0.000000e+00 7729.0
9 TraesCS5B01G026400 chr5A 79.642 1061 196 17 3956 5003 570501987 570503040 0.000000e+00 745.0
10 TraesCS5B01G026400 chr5A 90.598 117 8 1 6110 6223 22720355 22720471 1.080000e-32 152.0
11 TraesCS5B01G026400 chr5A 76.119 268 37 17 353 616 22714291 22714535 1.420000e-21 115.0
12 TraesCS5B01G026400 chr5A 100.000 35 0 0 5582 5616 22719903 22719937 1.450000e-06 65.8
13 TraesCS5B01G026400 chr2B 88.263 639 36 24 5519 6125 76528355 76528986 0.000000e+00 728.0
14 TraesCS5B01G026400 chr2B 98.750 80 1 0 4921 5000 76528261 76528340 6.500000e-30 143.0
15 TraesCS5B01G026400 chr4B 92.593 270 20 0 1 270 307892534 307892265 7.560000e-104 388.0
16 TraesCS5B01G026400 chr6A 91.882 271 21 1 1 270 586572994 586572724 1.640000e-100 377.0
17 TraesCS5B01G026400 chr2D 92.135 267 21 0 1 267 105964470 105964204 1.640000e-100 377.0
18 TraesCS5B01G026400 chr1B 91.822 269 22 0 1 269 200915381 200915113 5.890000e-100 375.0
19 TraesCS5B01G026400 chr7B 91.791 268 22 0 1 268 365024531 365024798 2.120000e-99 374.0
20 TraesCS5B01G026400 chr3B 91.791 268 22 0 1 268 78231294 78231561 2.120000e-99 374.0
21 TraesCS5B01G026400 chr3B 90.614 277 24 2 1 276 300350117 300350392 3.540000e-97 366.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G026400 chr5B 25266570 25272792 6222 True 11492.00 11492 100.000000 1 6223 1 chr5B.!!$R1 6222
1 TraesCS5B01G026400 chr5B 551501874 551502927 1053 False 756.00 756 79.849000 3956 5003 1 chr5B.!!$F2 1047
2 TraesCS5B01G026400 chr5D 34075132 34081084 5952 True 2762.00 7805 86.804667 346 6223 3 chr5D.!!$R1 5877
3 TraesCS5B01G026400 chr5D 451674443 451675496 1053 False 756.00 756 79.830000 3956 5003 1 chr5D.!!$F1 1047
4 TraesCS5B01G026400 chr5A 22714291 22720471 6180 False 2015.45 7729 89.806000 353 6223 4 chr5A.!!$F2 5870
5 TraesCS5B01G026400 chr5A 570501987 570503040 1053 False 745.00 745 79.642000 3956 5003 1 chr5A.!!$F1 1047
6 TraesCS5B01G026400 chr2B 76528261 76528986 725 False 435.50 728 93.506500 4921 6125 2 chr2B.!!$F1 1204

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 1252 0.109226 CTTGGACGACGGAGGACTTC 60.109 60.0 0.00 0.0 0.00 3.01 F
1348 1703 0.037303 CAATGTGAGCACACTCCCCT 59.963 55.0 15.43 0.0 45.05 4.79 F
2633 2997 0.796312 ACTAGTGCAAAATGACCGCG 59.204 50.0 0.00 0.0 0.00 6.46 F
2740 3105 0.895559 AGCAGGCTACCAGTTTTGCC 60.896 55.0 0.00 0.0 45.21 4.52 F
3740 4106 1.589414 AGAATGGAGAAGAGGGTGGG 58.411 55.0 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2650 3014 0.901580 CAAAACCAGGAGCCTGCCAT 60.902 55.0 11.07 0.00 42.35 4.40 R
2986 3351 0.976073 GTGATGGGGAAGACTCGGGA 60.976 60.0 0.00 0.00 0.00 5.14 R
3859 4226 1.799933 AACAAAGGGAAATGGGCACA 58.200 45.0 0.00 0.00 0.00 4.57 R
4645 5032 1.237285 AATCCTTGTGGTGTGCGCTC 61.237 55.0 9.73 5.51 34.23 5.03 R
5343 5769 0.033796 CAGGCAGGTCCCATCACAAT 60.034 55.0 0.00 0.00 34.51 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.986929 CTTCTAATTCCTCATAATTCCCTTGT 57.013 34.615 0.00 0.00 31.63 3.16
26 27 9.413734 CTTCTAATTCCTCATAATTCCCTTGTT 57.586 33.333 0.00 0.00 31.63 2.83
29 30 7.588497 AATTCCTCATAATTCCCTTGTTAGC 57.412 36.000 0.00 0.00 0.00 3.09
30 31 5.048846 TCCTCATAATTCCCTTGTTAGCC 57.951 43.478 0.00 0.00 0.00 3.93
31 32 4.141251 TCCTCATAATTCCCTTGTTAGCCC 60.141 45.833 0.00 0.00 0.00 5.19
32 33 4.141158 CCTCATAATTCCCTTGTTAGCCCT 60.141 45.833 0.00 0.00 0.00 5.19
33 34 5.048846 TCATAATTCCCTTGTTAGCCCTC 57.951 43.478 0.00 0.00 0.00 4.30
34 35 2.828661 AATTCCCTTGTTAGCCCTCC 57.171 50.000 0.00 0.00 0.00 4.30
35 36 1.681229 ATTCCCTTGTTAGCCCTCCA 58.319 50.000 0.00 0.00 0.00 3.86
36 37 0.991920 TTCCCTTGTTAGCCCTCCAG 59.008 55.000 0.00 0.00 0.00 3.86
37 38 0.118346 TCCCTTGTTAGCCCTCCAGA 59.882 55.000 0.00 0.00 0.00 3.86
38 39 0.991920 CCCTTGTTAGCCCTCCAGAA 59.008 55.000 0.00 0.00 0.00 3.02
39 40 1.354368 CCCTTGTTAGCCCTCCAGAAA 59.646 52.381 0.00 0.00 0.00 2.52
40 41 2.225017 CCCTTGTTAGCCCTCCAGAAAA 60.225 50.000 0.00 0.00 0.00 2.29
41 42 3.496331 CCTTGTTAGCCCTCCAGAAAAA 58.504 45.455 0.00 0.00 0.00 1.94
42 43 3.507622 CCTTGTTAGCCCTCCAGAAAAAG 59.492 47.826 0.00 0.00 0.00 2.27
43 44 3.154827 TGTTAGCCCTCCAGAAAAAGG 57.845 47.619 0.00 0.00 0.00 3.11
54 55 7.340122 CCTCCAGAAAAAGGGAAATTATCTC 57.660 40.000 0.00 0.00 31.58 2.75
55 56 7.122048 CCTCCAGAAAAAGGGAAATTATCTCT 58.878 38.462 0.00 0.00 42.20 3.10
56 57 7.284261 CCTCCAGAAAAAGGGAAATTATCTCTC 59.716 40.741 0.00 0.00 38.17 3.20
57 58 7.933223 TCCAGAAAAAGGGAAATTATCTCTCT 58.067 34.615 0.00 0.00 38.17 3.10
58 59 8.049721 TCCAGAAAAAGGGAAATTATCTCTCTC 58.950 37.037 0.00 0.00 38.17 3.20
59 60 7.284261 CCAGAAAAAGGGAAATTATCTCTCTCC 59.716 40.741 0.00 0.00 38.17 3.71
60 61 8.052141 CAGAAAAAGGGAAATTATCTCTCTCCT 58.948 37.037 0.00 0.00 38.17 3.69
61 62 8.052141 AGAAAAAGGGAAATTATCTCTCTCCTG 58.948 37.037 0.00 0.00 38.17 3.86
62 63 7.516450 AAAAGGGAAATTATCTCTCTCCTGA 57.484 36.000 0.00 0.00 38.17 3.86
63 64 7.704359 AAAGGGAAATTATCTCTCTCCTGAT 57.296 36.000 0.00 0.00 38.17 2.90
64 65 7.704359 AAGGGAAATTATCTCTCTCCTGATT 57.296 36.000 0.00 0.00 38.17 2.57
65 66 7.077050 AGGGAAATTATCTCTCTCCTGATTG 57.923 40.000 0.00 0.00 31.13 2.67
66 67 6.619023 AGGGAAATTATCTCTCTCCTGATTGT 59.381 38.462 0.00 0.00 31.13 2.71
67 68 6.934083 GGGAAATTATCTCTCTCCTGATTGTC 59.066 42.308 0.00 0.00 0.00 3.18
68 69 7.202084 GGGAAATTATCTCTCTCCTGATTGTCT 60.202 40.741 0.00 0.00 0.00 3.41
69 70 7.656948 GGAAATTATCTCTCTCCTGATTGTCTG 59.343 40.741 0.00 0.00 0.00 3.51
70 71 7.673641 AATTATCTCTCTCCTGATTGTCTGT 57.326 36.000 0.00 0.00 0.00 3.41
71 72 8.774546 AATTATCTCTCTCCTGATTGTCTGTA 57.225 34.615 0.00 0.00 0.00 2.74
72 73 8.954834 ATTATCTCTCTCCTGATTGTCTGTAT 57.045 34.615 0.00 0.00 0.00 2.29
73 74 6.899393 ATCTCTCTCCTGATTGTCTGTATC 57.101 41.667 0.00 0.00 0.00 2.24
74 75 6.012337 TCTCTCTCCTGATTGTCTGTATCT 57.988 41.667 0.00 0.00 0.00 1.98
75 76 6.061441 TCTCTCTCCTGATTGTCTGTATCTC 58.939 44.000 0.00 0.00 0.00 2.75
76 77 6.012337 TCTCTCCTGATTGTCTGTATCTCT 57.988 41.667 0.00 0.00 0.00 3.10
77 78 6.430864 TCTCTCCTGATTGTCTGTATCTCTT 58.569 40.000 0.00 0.00 0.00 2.85
78 79 6.545666 TCTCTCCTGATTGTCTGTATCTCTTC 59.454 42.308 0.00 0.00 0.00 2.87
79 80 6.430864 TCTCCTGATTGTCTGTATCTCTTCT 58.569 40.000 0.00 0.00 0.00 2.85
80 81 6.894654 TCTCCTGATTGTCTGTATCTCTTCTT 59.105 38.462 0.00 0.00 0.00 2.52
81 82 6.871844 TCCTGATTGTCTGTATCTCTTCTTG 58.128 40.000 0.00 0.00 0.00 3.02
82 83 6.438741 TCCTGATTGTCTGTATCTCTTCTTGT 59.561 38.462 0.00 0.00 0.00 3.16
83 84 7.615757 TCCTGATTGTCTGTATCTCTTCTTGTA 59.384 37.037 0.00 0.00 0.00 2.41
84 85 7.920151 CCTGATTGTCTGTATCTCTTCTTGTAG 59.080 40.741 0.00 0.00 0.00 2.74
85 86 7.261325 TGATTGTCTGTATCTCTTCTTGTAGC 58.739 38.462 0.00 0.00 0.00 3.58
86 87 6.590234 TTGTCTGTATCTCTTCTTGTAGCA 57.410 37.500 0.00 0.00 0.00 3.49
87 88 6.590234 TGTCTGTATCTCTTCTTGTAGCAA 57.410 37.500 0.00 0.00 0.00 3.91
88 89 6.993079 TGTCTGTATCTCTTCTTGTAGCAAA 58.007 36.000 0.00 0.00 0.00 3.68
89 90 7.441836 TGTCTGTATCTCTTCTTGTAGCAAAA 58.558 34.615 0.00 0.00 0.00 2.44
90 91 7.600375 TGTCTGTATCTCTTCTTGTAGCAAAAG 59.400 37.037 0.00 0.00 0.00 2.27
91 92 7.815068 GTCTGTATCTCTTCTTGTAGCAAAAGA 59.185 37.037 0.00 0.00 31.85 2.52
92 93 8.367911 TCTGTATCTCTTCTTGTAGCAAAAGAA 58.632 33.333 7.86 7.86 40.46 2.52
101 102 8.691661 TTCTTGTAGCAAAAGAAGGAAAGTAT 57.308 30.769 4.84 0.00 38.43 2.12
102 103 8.324163 TCTTGTAGCAAAAGAAGGAAAGTATC 57.676 34.615 0.00 0.00 30.79 2.24
103 104 8.157476 TCTTGTAGCAAAAGAAGGAAAGTATCT 58.843 33.333 0.00 0.00 30.79 1.98
104 105 7.907214 TGTAGCAAAAGAAGGAAAGTATCTC 57.093 36.000 0.00 0.00 0.00 2.75
105 106 7.680730 TGTAGCAAAAGAAGGAAAGTATCTCT 58.319 34.615 0.00 0.00 0.00 3.10
106 107 7.819900 TGTAGCAAAAGAAGGAAAGTATCTCTC 59.180 37.037 0.00 0.00 0.00 3.20
107 108 7.014988 AGCAAAAGAAGGAAAGTATCTCTCT 57.985 36.000 0.00 0.00 0.00 3.10
108 109 7.102993 AGCAAAAGAAGGAAAGTATCTCTCTC 58.897 38.462 0.00 0.00 0.00 3.20
109 110 7.038373 AGCAAAAGAAGGAAAGTATCTCTCTCT 60.038 37.037 0.00 0.00 0.00 3.10
110 111 7.277760 GCAAAAGAAGGAAAGTATCTCTCTCTC 59.722 40.741 0.00 0.00 0.00 3.20
111 112 6.693315 AAGAAGGAAAGTATCTCTCTCTCG 57.307 41.667 0.00 0.00 0.00 4.04
112 113 5.996644 AGAAGGAAAGTATCTCTCTCTCGA 58.003 41.667 0.00 0.00 0.00 4.04
113 114 6.601332 AGAAGGAAAGTATCTCTCTCTCGAT 58.399 40.000 0.00 0.00 0.00 3.59
114 115 7.060421 AGAAGGAAAGTATCTCTCTCTCGATT 58.940 38.462 0.00 0.00 0.00 3.34
115 116 6.633500 AGGAAAGTATCTCTCTCTCGATTG 57.367 41.667 0.00 0.00 0.00 2.67
116 117 5.009610 AGGAAAGTATCTCTCTCTCGATTGC 59.990 44.000 0.00 0.00 0.00 3.56
117 118 5.221145 GGAAAGTATCTCTCTCTCGATTGCA 60.221 44.000 0.00 0.00 0.00 4.08
118 119 6.403866 AAAGTATCTCTCTCTCGATTGCAT 57.596 37.500 0.00 0.00 0.00 3.96
119 120 5.375417 AGTATCTCTCTCTCGATTGCATG 57.625 43.478 0.00 0.00 0.00 4.06
120 121 4.826733 AGTATCTCTCTCTCGATTGCATGT 59.173 41.667 0.00 0.00 0.00 3.21
121 122 6.000840 AGTATCTCTCTCTCGATTGCATGTA 58.999 40.000 0.00 0.00 0.00 2.29
122 123 5.981088 ATCTCTCTCTCGATTGCATGTAT 57.019 39.130 0.00 0.00 0.00 2.29
123 124 5.369685 TCTCTCTCTCGATTGCATGTATC 57.630 43.478 0.00 0.00 0.00 2.24
124 125 5.069318 TCTCTCTCTCGATTGCATGTATCT 58.931 41.667 0.00 0.00 0.00 1.98
125 126 5.181056 TCTCTCTCTCGATTGCATGTATCTC 59.819 44.000 0.00 0.00 0.00 2.75
126 127 4.823989 TCTCTCTCGATTGCATGTATCTCA 59.176 41.667 0.00 0.00 0.00 3.27
127 128 5.476254 TCTCTCTCGATTGCATGTATCTCAT 59.524 40.000 0.00 0.00 37.22 2.90
128 129 6.656693 TCTCTCTCGATTGCATGTATCTCATA 59.343 38.462 0.00 0.00 34.67 2.15
129 130 6.616017 TCTCTCGATTGCATGTATCTCATAC 58.384 40.000 0.00 0.00 34.67 2.39
130 131 6.432472 TCTCTCGATTGCATGTATCTCATACT 59.568 38.462 0.00 0.00 36.70 2.12
131 132 6.986250 TCTCGATTGCATGTATCTCATACTT 58.014 36.000 0.00 0.00 36.70 2.24
132 133 7.436933 TCTCGATTGCATGTATCTCATACTTT 58.563 34.615 0.00 0.00 36.70 2.66
133 134 7.596621 TCTCGATTGCATGTATCTCATACTTTC 59.403 37.037 0.00 0.00 36.70 2.62
134 135 6.646653 TCGATTGCATGTATCTCATACTTTCC 59.353 38.462 0.00 0.00 36.70 3.13
135 136 6.648310 CGATTGCATGTATCTCATACTTTCCT 59.352 38.462 0.00 0.00 36.70 3.36
136 137 7.148672 CGATTGCATGTATCTCATACTTTCCTC 60.149 40.741 0.00 0.00 36.70 3.71
137 138 6.484364 TGCATGTATCTCATACTTTCCTCA 57.516 37.500 0.00 0.00 36.70 3.86
138 139 6.888105 TGCATGTATCTCATACTTTCCTCAA 58.112 36.000 0.00 0.00 36.70 3.02
139 140 6.763135 TGCATGTATCTCATACTTTCCTCAAC 59.237 38.462 0.00 0.00 36.70 3.18
140 141 6.989169 GCATGTATCTCATACTTTCCTCAACT 59.011 38.462 0.00 0.00 36.70 3.16
141 142 8.144478 GCATGTATCTCATACTTTCCTCAACTA 58.856 37.037 0.00 0.00 36.70 2.24
188 189 9.919348 CAAATAAATTTGCCAAGGATAATTTCG 57.081 29.630 0.00 0.00 40.42 3.46
189 190 9.665719 AAATAAATTTGCCAAGGATAATTTCGT 57.334 25.926 0.00 4.35 33.59 3.85
190 191 8.871686 ATAAATTTGCCAAGGATAATTTCGTC 57.128 30.769 0.00 0.00 33.59 4.20
191 192 4.712122 TTTGCCAAGGATAATTTCGTCC 57.288 40.909 0.00 0.00 34.64 4.79
192 193 3.644966 TGCCAAGGATAATTTCGTCCT 57.355 42.857 0.00 1.97 46.63 3.85
193 194 4.764050 TGCCAAGGATAATTTCGTCCTA 57.236 40.909 7.04 0.00 43.94 2.94
194 195 5.105567 TGCCAAGGATAATTTCGTCCTAA 57.894 39.130 7.04 0.00 43.94 2.69
195 196 4.879545 TGCCAAGGATAATTTCGTCCTAAC 59.120 41.667 7.04 2.52 43.94 2.34
196 197 4.879545 GCCAAGGATAATTTCGTCCTAACA 59.120 41.667 7.04 0.00 43.94 2.41
197 198 5.531287 GCCAAGGATAATTTCGTCCTAACAT 59.469 40.000 7.04 0.00 43.94 2.71
198 199 6.513393 GCCAAGGATAATTTCGTCCTAACATG 60.513 42.308 7.04 0.00 43.94 3.21
199 200 6.542370 CCAAGGATAATTTCGTCCTAACATGT 59.458 38.462 0.00 0.00 43.94 3.21
200 201 7.067008 CCAAGGATAATTTCGTCCTAACATGTT 59.933 37.037 16.68 16.68 43.94 2.71
201 202 8.458843 CAAGGATAATTTCGTCCTAACATGTTT 58.541 33.333 17.78 0.95 43.94 2.83
202 203 9.675464 AAGGATAATTTCGTCCTAACATGTTTA 57.325 29.630 17.78 0.00 43.94 2.01
203 204 9.847224 AGGATAATTTCGTCCTAACATGTTTAT 57.153 29.630 17.78 4.17 42.93 1.40
210 211 7.703298 TCGTCCTAACATGTTTATAATTCCG 57.297 36.000 17.78 8.72 0.00 4.30
211 212 7.267128 TCGTCCTAACATGTTTATAATTCCGT 58.733 34.615 17.78 0.00 0.00 4.69
212 213 7.223193 TCGTCCTAACATGTTTATAATTCCGTG 59.777 37.037 17.78 0.00 0.00 4.94
213 214 7.223193 CGTCCTAACATGTTTATAATTCCGTGA 59.777 37.037 17.78 0.00 0.00 4.35
214 215 8.333186 GTCCTAACATGTTTATAATTCCGTGAC 58.667 37.037 17.78 4.12 0.00 3.67
215 216 8.262227 TCCTAACATGTTTATAATTCCGTGACT 58.738 33.333 17.78 0.00 0.00 3.41
216 217 8.889717 CCTAACATGTTTATAATTCCGTGACTT 58.110 33.333 17.78 0.00 0.00 3.01
217 218 9.702726 CTAACATGTTTATAATTCCGTGACTTG 57.297 33.333 17.78 2.69 0.00 3.16
218 219 7.083875 ACATGTTTATAATTCCGTGACTTGG 57.916 36.000 0.00 0.00 0.00 3.61
219 220 6.657541 ACATGTTTATAATTCCGTGACTTGGT 59.342 34.615 0.00 0.00 0.00 3.67
220 221 6.730960 TGTTTATAATTCCGTGACTTGGTC 57.269 37.500 0.00 0.00 0.00 4.02
221 222 6.231951 TGTTTATAATTCCGTGACTTGGTCA 58.768 36.000 0.00 0.00 40.50 4.02
228 229 2.110213 TGACTTGGTCACCGTGCC 59.890 61.111 0.00 0.00 37.67 5.01
229 230 2.110213 GACTTGGTCACCGTGCCA 59.890 61.111 9.74 9.74 32.09 4.92
230 231 1.525077 GACTTGGTCACCGTGCCAA 60.525 57.895 19.72 19.72 41.90 4.52
231 232 1.077357 ACTTGGTCACCGTGCCAAA 60.077 52.632 20.67 0.00 43.29 3.28
232 233 0.681564 ACTTGGTCACCGTGCCAAAA 60.682 50.000 20.67 7.24 43.29 2.44
233 234 0.457851 CTTGGTCACCGTGCCAAAAA 59.542 50.000 20.67 6.72 43.29 1.94
234 235 1.068434 CTTGGTCACCGTGCCAAAAAT 59.932 47.619 20.67 0.00 43.29 1.82
235 236 1.982660 TGGTCACCGTGCCAAAAATA 58.017 45.000 10.99 0.00 0.00 1.40
236 237 2.307768 TGGTCACCGTGCCAAAAATAA 58.692 42.857 10.99 0.00 0.00 1.40
237 238 2.894126 TGGTCACCGTGCCAAAAATAAT 59.106 40.909 10.99 0.00 0.00 1.28
238 239 4.079970 TGGTCACCGTGCCAAAAATAATA 58.920 39.130 10.99 0.00 0.00 0.98
239 240 4.082679 TGGTCACCGTGCCAAAAATAATAC 60.083 41.667 10.99 0.00 0.00 1.89
240 241 4.082679 GGTCACCGTGCCAAAAATAATACA 60.083 41.667 7.01 0.00 0.00 2.29
241 242 4.854839 GTCACCGTGCCAAAAATAATACAC 59.145 41.667 0.00 0.00 0.00 2.90
242 243 4.082679 TCACCGTGCCAAAAATAATACACC 60.083 41.667 0.00 0.00 0.00 4.16
243 244 4.082463 CACCGTGCCAAAAATAATACACCT 60.082 41.667 0.00 0.00 0.00 4.00
244 245 4.525100 ACCGTGCCAAAAATAATACACCTT 59.475 37.500 0.00 0.00 0.00 3.50
245 246 5.711036 ACCGTGCCAAAAATAATACACCTTA 59.289 36.000 0.00 0.00 0.00 2.69
246 247 6.031471 CCGTGCCAAAAATAATACACCTTAC 58.969 40.000 0.00 0.00 0.00 2.34
247 248 6.349445 CCGTGCCAAAAATAATACACCTTACA 60.349 38.462 0.00 0.00 0.00 2.41
248 249 7.254852 CGTGCCAAAAATAATACACCTTACAT 58.745 34.615 0.00 0.00 0.00 2.29
249 250 8.399425 CGTGCCAAAAATAATACACCTTACATA 58.601 33.333 0.00 0.00 0.00 2.29
260 261 8.488651 AATACACCTTACATAAAGAAACGGAG 57.511 34.615 0.00 0.00 37.38 4.63
261 262 6.105397 ACACCTTACATAAAGAAACGGAGA 57.895 37.500 0.00 0.00 37.38 3.71
262 263 6.164176 ACACCTTACATAAAGAAACGGAGAG 58.836 40.000 0.00 0.00 37.38 3.20
263 264 6.014840 ACACCTTACATAAAGAAACGGAGAGA 60.015 38.462 0.00 0.00 37.38 3.10
264 265 6.531948 CACCTTACATAAAGAAACGGAGAGAG 59.468 42.308 0.00 0.00 37.38 3.20
265 266 6.210984 ACCTTACATAAAGAAACGGAGAGAGT 59.789 38.462 0.00 0.00 37.38 3.24
266 267 7.395489 ACCTTACATAAAGAAACGGAGAGAGTA 59.605 37.037 0.00 0.00 37.38 2.59
267 268 8.414778 CCTTACATAAAGAAACGGAGAGAGTAT 58.585 37.037 0.00 0.00 37.38 2.12
271 272 8.291032 ACATAAAGAAACGGAGAGAGTATATCG 58.709 37.037 0.00 0.00 0.00 2.92
272 273 4.752661 AGAAACGGAGAGAGTATATCGC 57.247 45.455 0.00 0.00 0.00 4.58
273 274 4.135306 AGAAACGGAGAGAGTATATCGCA 58.865 43.478 0.00 0.00 0.00 5.10
274 275 4.579340 AGAAACGGAGAGAGTATATCGCAA 59.421 41.667 0.00 0.00 0.00 4.85
275 276 4.491234 AACGGAGAGAGTATATCGCAAG 57.509 45.455 0.00 0.00 0.00 4.01
276 277 2.814919 ACGGAGAGAGTATATCGCAAGG 59.185 50.000 0.00 0.00 38.47 3.61
277 278 3.075148 CGGAGAGAGTATATCGCAAGGA 58.925 50.000 0.00 0.00 38.47 3.36
278 279 3.502595 CGGAGAGAGTATATCGCAAGGAA 59.497 47.826 0.00 0.00 38.47 3.36
279 280 4.156922 CGGAGAGAGTATATCGCAAGGAAT 59.843 45.833 0.00 0.00 38.47 3.01
280 281 5.336055 CGGAGAGAGTATATCGCAAGGAATT 60.336 44.000 0.00 0.00 38.47 2.17
281 282 6.127980 CGGAGAGAGTATATCGCAAGGAATTA 60.128 42.308 0.00 0.00 38.47 1.40
282 283 7.415765 CGGAGAGAGTATATCGCAAGGAATTAT 60.416 40.741 0.00 0.00 38.47 1.28
283 284 7.918562 GGAGAGAGTATATCGCAAGGAATTATC 59.081 40.741 0.00 0.00 38.47 1.75
284 285 7.777095 AGAGAGTATATCGCAAGGAATTATCC 58.223 38.462 0.00 0.00 46.98 2.59
300 301 8.754230 GGAATTATCCATAGTAACTAACCGTC 57.246 38.462 0.00 0.00 45.79 4.79
301 302 7.816513 GGAATTATCCATAGTAACTAACCGTCC 59.183 40.741 0.00 0.00 45.79 4.79
302 303 7.844493 ATTATCCATAGTAACTAACCGTCCA 57.156 36.000 0.00 0.00 0.00 4.02
303 304 7.844493 TTATCCATAGTAACTAACCGTCCAT 57.156 36.000 0.00 0.00 0.00 3.41
304 305 8.938801 TTATCCATAGTAACTAACCGTCCATA 57.061 34.615 0.00 0.00 0.00 2.74
305 306 7.844493 ATCCATAGTAACTAACCGTCCATAA 57.156 36.000 0.00 0.00 0.00 1.90
306 307 7.042797 TCCATAGTAACTAACCGTCCATAAC 57.957 40.000 0.00 0.00 0.00 1.89
307 308 6.040842 TCCATAGTAACTAACCGTCCATAACC 59.959 42.308 0.00 0.00 0.00 2.85
308 309 4.376340 AGTAACTAACCGTCCATAACCG 57.624 45.455 0.00 0.00 0.00 4.44
309 310 3.763897 AGTAACTAACCGTCCATAACCGT 59.236 43.478 0.00 0.00 0.00 4.83
310 311 3.683365 AACTAACCGTCCATAACCGTT 57.317 42.857 0.00 0.00 34.38 4.44
311 312 3.683365 ACTAACCGTCCATAACCGTTT 57.317 42.857 0.00 0.00 32.59 3.60
312 313 3.328505 ACTAACCGTCCATAACCGTTTG 58.671 45.455 0.00 0.00 32.59 2.93
313 314 1.525941 AACCGTCCATAACCGTTTGG 58.474 50.000 0.00 0.00 42.84 3.28
314 315 0.686224 ACCGTCCATAACCGTTTGGA 59.314 50.000 9.71 9.71 39.70 3.53
315 316 1.338389 ACCGTCCATAACCGTTTGGAG 60.338 52.381 12.65 7.37 42.55 3.86
316 317 1.338389 CCGTCCATAACCGTTTGGAGT 60.338 52.381 12.65 0.00 42.55 3.85
317 318 2.419667 CGTCCATAACCGTTTGGAGTT 58.580 47.619 12.65 0.00 42.55 3.01
318 319 2.158841 CGTCCATAACCGTTTGGAGTTG 59.841 50.000 12.65 5.70 42.55 3.16
319 320 2.486592 GTCCATAACCGTTTGGAGTTGG 59.513 50.000 12.65 0.00 42.55 3.77
320 321 1.201414 CCATAACCGTTTGGAGTTGGC 59.799 52.381 6.63 0.00 39.21 4.52
321 322 1.201414 CATAACCGTTTGGAGTTGGCC 59.799 52.381 0.00 0.00 39.21 5.36
322 323 0.537828 TAACCGTTTGGAGTTGGCCC 60.538 55.000 0.00 0.00 39.21 5.80
323 324 2.203422 CCGTTTGGAGTTGGCCCA 60.203 61.111 0.00 0.00 37.49 5.36
324 325 1.830408 CCGTTTGGAGTTGGCCCAA 60.830 57.895 0.00 0.00 41.53 4.12
325 326 1.659794 CGTTTGGAGTTGGCCCAAG 59.340 57.895 0.00 0.00 43.72 3.61
326 327 1.805428 CGTTTGGAGTTGGCCCAAGG 61.805 60.000 0.00 0.00 43.72 3.61
327 328 1.152355 TTTGGAGTTGGCCCAAGGG 60.152 57.895 0.00 0.00 43.72 3.95
328 329 1.660019 TTTGGAGTTGGCCCAAGGGA 61.660 55.000 9.92 0.00 43.72 4.20
329 330 2.080336 TTGGAGTTGGCCCAAGGGAG 62.080 60.000 9.92 0.00 38.64 4.30
330 331 2.356667 GAGTTGGCCCAAGGGAGG 59.643 66.667 9.92 0.00 37.50 4.30
338 339 3.998560 CCCAAGGGAGGCAATAACA 57.001 52.632 0.00 0.00 37.50 2.41
339 340 2.230130 CCCAAGGGAGGCAATAACAA 57.770 50.000 0.00 0.00 37.50 2.83
340 341 2.534990 CCCAAGGGAGGCAATAACAAA 58.465 47.619 0.00 0.00 37.50 2.83
341 342 2.233676 CCCAAGGGAGGCAATAACAAAC 59.766 50.000 0.00 0.00 37.50 2.93
342 343 2.896685 CCAAGGGAGGCAATAACAAACA 59.103 45.455 0.00 0.00 0.00 2.83
343 344 3.323403 CCAAGGGAGGCAATAACAAACAA 59.677 43.478 0.00 0.00 0.00 2.83
344 345 4.020307 CCAAGGGAGGCAATAACAAACAAT 60.020 41.667 0.00 0.00 0.00 2.71
373 374 2.994995 TGCTCCATCGGTCCACGT 60.995 61.111 0.00 0.00 44.69 4.49
374 375 2.509336 GCTCCATCGGTCCACGTG 60.509 66.667 9.08 9.08 44.69 4.49
375 376 2.970639 CTCCATCGGTCCACGTGT 59.029 61.111 15.65 0.00 44.69 4.49
387 388 3.766691 ACGTGTATCGCGGCCCTT 61.767 61.111 6.13 0.00 41.96 3.95
389 390 2.125269 GTGTATCGCGGCCCTTGT 60.125 61.111 6.13 0.00 0.00 3.16
392 393 1.153429 GTATCGCGGCCCTTGTTCT 60.153 57.895 6.13 0.00 0.00 3.01
433 434 3.942115 TCAATCCAAACACGTCACAGAAA 59.058 39.130 0.00 0.00 0.00 2.52
434 435 3.963383 ATCCAAACACGTCACAGAAAC 57.037 42.857 0.00 0.00 0.00 2.78
435 436 2.701107 TCCAAACACGTCACAGAAACA 58.299 42.857 0.00 0.00 0.00 2.83
479 481 7.781324 ACTTATCCACAACCAAAGATTCAAT 57.219 32.000 0.00 0.00 0.00 2.57
489 522 6.544928 ACCAAAGATTCAATCAATAACCCC 57.455 37.500 0.00 0.00 0.00 4.95
492 525 6.127479 CCAAAGATTCAATCAATAACCCCGAA 60.127 38.462 0.00 0.00 0.00 4.30
534 567 1.937899 CGCCCTGGAGTAAATTTACCG 59.062 52.381 21.92 13.65 34.19 4.02
539 572 3.340034 CTGGAGTAAATTTACCGTGCCA 58.660 45.455 21.92 20.68 34.19 4.92
551 586 3.636282 ACCGTGCCACTTTTTCATAAC 57.364 42.857 0.00 0.00 0.00 1.89
553 588 3.004315 ACCGTGCCACTTTTTCATAACAG 59.996 43.478 0.00 0.00 0.00 3.16
631 950 5.851177 CGCGTGTGTGATTATTTCTTTCTTT 59.149 36.000 0.00 0.00 0.00 2.52
632 951 6.359617 CGCGTGTGTGATTATTTCTTTCTTTT 59.640 34.615 0.00 0.00 0.00 2.27
633 952 7.408290 CGCGTGTGTGATTATTTCTTTCTTTTC 60.408 37.037 0.00 0.00 0.00 2.29
634 953 7.148967 GCGTGTGTGATTATTTCTTTCTTTTCC 60.149 37.037 0.00 0.00 0.00 3.13
635 954 7.326063 CGTGTGTGATTATTTCTTTCTTTTCCC 59.674 37.037 0.00 0.00 0.00 3.97
636 955 8.360390 GTGTGTGATTATTTCTTTCTTTTCCCT 58.640 33.333 0.00 0.00 0.00 4.20
637 956 8.576442 TGTGTGATTATTTCTTTCTTTTCCCTC 58.424 33.333 0.00 0.00 0.00 4.30
638 957 8.576442 GTGTGATTATTTCTTTCTTTTCCCTCA 58.424 33.333 0.00 0.00 0.00 3.86
639 958 9.142014 TGTGATTATTTCTTTCTTTTCCCTCAA 57.858 29.630 0.00 0.00 0.00 3.02
640 959 9.981114 GTGATTATTTCTTTCTTTTCCCTCAAA 57.019 29.630 0.00 0.00 0.00 2.69
670 989 8.485976 AAGATTATTTCTTTCTTCCTCACTCG 57.514 34.615 0.00 0.00 42.15 4.18
702 1027 4.925861 GCCCGCTGCATCTCCTCC 62.926 72.222 0.00 0.00 40.77 4.30
739 1065 1.576272 CTTCTTCCTCCTCCCCTCCTA 59.424 57.143 0.00 0.00 0.00 2.94
741 1067 0.938192 CTTCCTCCTCCCCTCCTACT 59.062 60.000 0.00 0.00 0.00 2.57
907 1238 2.391724 AAAGCGCCCTTCTTGGACGA 62.392 55.000 2.29 0.00 38.35 4.20
908 1239 3.119096 GCGCCCTTCTTGGACGAC 61.119 66.667 0.00 0.00 38.35 4.34
913 1247 1.215647 CCTTCTTGGACGACGGAGG 59.784 63.158 0.00 0.00 38.35 4.30
914 1248 1.248785 CCTTCTTGGACGACGGAGGA 61.249 60.000 0.00 0.00 38.35 3.71
916 1250 0.538977 TTCTTGGACGACGGAGGACT 60.539 55.000 0.00 0.00 0.00 3.85
917 1251 0.538977 TCTTGGACGACGGAGGACTT 60.539 55.000 0.00 0.00 0.00 3.01
918 1252 0.109226 CTTGGACGACGGAGGACTTC 60.109 60.000 0.00 0.00 0.00 3.01
919 1253 1.530013 TTGGACGACGGAGGACTTCC 61.530 60.000 0.00 0.00 43.04 3.46
920 1254 2.708865 GGACGACGGAGGACTTCCC 61.709 68.421 0.00 0.00 43.63 3.97
935 1269 0.177141 TTCCCTGTTCGATTAGGCGG 59.823 55.000 9.39 0.00 32.58 6.13
937 1271 0.529992 CCCTGTTCGATTAGGCGGTC 60.530 60.000 9.39 0.00 32.58 4.79
939 1273 0.460311 CTGTTCGATTAGGCGGTCCT 59.540 55.000 0.00 0.00 46.57 3.85
972 1306 2.522193 GAGGTAGAGGCCGAGGGG 60.522 72.222 0.00 0.00 0.00 4.79
973 1307 4.159108 AGGTAGAGGCCGAGGGGG 62.159 72.222 0.00 0.00 39.58 5.40
974 1308 4.477119 GGTAGAGGCCGAGGGGGT 62.477 72.222 0.00 0.00 38.44 4.95
975 1309 3.155167 GTAGAGGCCGAGGGGGTG 61.155 72.222 0.00 0.00 38.44 4.61
994 1331 1.427592 GCTCTGAGGCTCGTTGATGC 61.428 60.000 10.42 9.45 0.00 3.91
1348 1703 0.037303 CAATGTGAGCACACTCCCCT 59.963 55.000 15.43 0.00 45.05 4.79
1349 1704 0.037303 AATGTGAGCACACTCCCCTG 59.963 55.000 15.43 0.00 45.05 4.45
1350 1705 2.359230 GTGAGCACACTCCCCTGC 60.359 66.667 7.06 0.00 42.74 4.85
1351 1706 2.848679 TGAGCACACTCCCCTGCA 60.849 61.111 0.00 0.00 42.74 4.41
1352 1707 2.359230 GAGCACACTCCCCTGCAC 60.359 66.667 0.00 0.00 36.90 4.57
1353 1708 3.909086 GAGCACACTCCCCTGCACC 62.909 68.421 0.00 0.00 36.90 5.01
1355 1710 4.351054 CACACTCCCCTGCACCCC 62.351 72.222 0.00 0.00 0.00 4.95
1382 1743 2.651232 CGCGTACTGCTACCGCTC 60.651 66.667 0.00 0.00 43.27 5.03
1471 1832 8.702163 ATGGATTTGTTATTTTGACGATTTCC 57.298 30.769 0.00 0.00 0.00 3.13
1563 1926 9.874205 TTGAATCATTCCTGTTTGGATATTTTC 57.126 29.630 0.00 0.00 45.68 2.29
1566 1929 9.880157 AATCATTCCTGTTTGGATATTTTCTTG 57.120 29.630 0.00 0.00 45.68 3.02
1594 1957 2.516930 CCCGGTCATGGTGATGGC 60.517 66.667 0.00 0.00 32.98 4.40
1695 2058 7.442969 TCGTTTAGATCTTGCCTTTTAGAACAA 59.557 33.333 0.00 0.00 0.00 2.83
1696 2059 7.534239 CGTTTAGATCTTGCCTTTTAGAACAAC 59.466 37.037 0.00 0.00 0.00 3.32
1697 2060 8.349983 GTTTAGATCTTGCCTTTTAGAACAACA 58.650 33.333 0.00 0.00 0.00 3.33
1698 2061 6.959639 AGATCTTGCCTTTTAGAACAACAA 57.040 33.333 0.00 0.00 0.00 2.83
1740 2103 5.106515 GCAACAAACCCAAGCTTTTAACAAA 60.107 36.000 0.00 0.00 0.00 2.83
1748 2111 7.158697 ACCCAAGCTTTTAACAAAATATGACC 58.841 34.615 0.00 0.00 0.00 4.02
1852 2215 1.152963 AGTGTGGTTGGTGCTGGTC 60.153 57.895 0.00 0.00 0.00 4.02
1876 2239 8.682016 GTCTTTATTTCAGTTTTTGTGACGATG 58.318 33.333 0.00 0.00 0.00 3.84
1904 2267 8.814038 ATTATTGATCTTAGCCACTTTTCTGT 57.186 30.769 0.00 0.00 0.00 3.41
1965 2329 3.343941 TGGTTAGGCCATGTAGTTGTC 57.656 47.619 5.01 0.00 43.61 3.18
1972 2336 2.166254 GGCCATGTAGTTGTCATTTGGG 59.834 50.000 0.00 0.00 0.00 4.12
1976 2340 4.035558 CCATGTAGTTGTCATTTGGGATCG 59.964 45.833 0.00 0.00 0.00 3.69
2006 2370 7.954788 TCGGTTTAGCTTTATTGCAAATTTT 57.045 28.000 1.71 0.00 34.99 1.82
2007 2371 8.013236 TCGGTTTAGCTTTATTGCAAATTTTC 57.987 30.769 1.71 0.00 34.99 2.29
2100 2464 5.730296 ATATATGAAAGCCTAGCTGTCGT 57.270 39.130 6.71 6.71 45.19 4.34
2199 2563 9.098355 GGAGAAAGCGATATAATGCAATATACA 57.902 33.333 3.59 0.00 0.00 2.29
2606 2970 1.746991 GCAGGCTACCAGTTCTGCC 60.747 63.158 0.00 0.00 44.70 4.85
2633 2997 0.796312 ACTAGTGCAAAATGACCGCG 59.204 50.000 0.00 0.00 0.00 6.46
2650 3014 4.751060 ACCGCGTCATTTAAATCTCTACA 58.249 39.130 4.92 0.00 0.00 2.74
2660 3024 2.926778 AATCTCTACATGGCAGGCTC 57.073 50.000 0.00 0.00 0.00 4.70
2706 3070 5.351233 TGTAAAGTAAATTGACCACAGCG 57.649 39.130 0.00 0.00 0.00 5.18
2740 3105 0.895559 AGCAGGCTACCAGTTTTGCC 60.896 55.000 0.00 0.00 45.21 4.52
2750 3115 3.018149 ACCAGTTTTGCCGAGTTAAACA 58.982 40.909 0.00 0.00 34.93 2.83
2927 3292 4.371855 TCACTGAACCTAGCAGATTACG 57.628 45.455 0.00 0.00 36.86 3.18
2968 3333 7.008941 AGGAAATTGAGATTATCCTCCCATTG 58.991 38.462 0.00 0.00 32.27 2.82
2973 3338 2.039084 AGATTATCCTCCCATTGTCGGC 59.961 50.000 0.00 0.00 0.00 5.54
3057 3423 1.867233 CCAGTGACACTTTCTTGTCCG 59.133 52.381 5.04 0.00 44.63 4.79
3126 3492 7.506328 ACCAGTTTGTTAATTACTGTCCTTC 57.494 36.000 11.31 0.00 38.04 3.46
3320 3686 2.152016 ACAGATCTTGTGTCGACTCGA 58.848 47.619 17.92 12.18 38.99 4.04
3333 3699 2.419324 TCGACTCGAAGGTCTAAGAAGC 59.581 50.000 0.00 0.00 34.38 3.86
3740 4106 1.589414 AGAATGGAGAAGAGGGTGGG 58.411 55.000 0.00 0.00 0.00 4.61
3761 4127 5.053145 GGGGATGATATTGACTATGATCGC 58.947 45.833 0.00 0.00 40.41 4.58
3781 4147 2.807108 GCCGGCTATTAACCTCTTCTGG 60.807 54.545 22.15 0.00 0.00 3.86
3835 4202 9.465199 TTTCATATCTTGGACATGATTCTTGAA 57.535 29.630 0.00 9.75 0.00 2.69
3836 4203 9.636789 TTCATATCTTGGACATGATTCTTGAAT 57.363 29.630 0.00 0.00 0.00 2.57
3859 4226 9.087424 GAATTTCACTTTCTGTTTACTGCTTTT 57.913 29.630 0.00 0.00 0.00 2.27
3860 4227 7.810766 TTTCACTTTCTGTTTACTGCTTTTG 57.189 32.000 0.00 0.00 0.00 2.44
4279 4660 3.496130 ACAAGCACTTTGATCTTGAGACG 59.504 43.478 8.03 0.00 39.48 4.18
4387 4768 2.618709 CAGTGGGTTTGACTTCCTTGAC 59.381 50.000 0.00 0.00 0.00 3.18
4516 4900 4.421479 AAGGTCGAGGCTGACGCG 62.421 66.667 3.53 3.53 44.16 6.01
4645 5032 0.393537 AAGAAGGCAGCCCTGATTCG 60.394 55.000 8.22 0.00 41.90 3.34
4702 5089 2.659610 GAGCAGGACAGCGGAACT 59.340 61.111 0.00 0.00 40.15 3.01
4831 5221 4.115199 AAGGGGCTCATGGCGTCC 62.115 66.667 0.00 0.00 42.94 4.79
5058 5451 3.508762 CGGCGTTTAACATACAGAGAGT 58.491 45.455 0.00 0.00 0.00 3.24
5064 5457 6.613233 CGTTTAACATACAGAGAGTGAGAGT 58.387 40.000 0.00 0.00 0.00 3.24
5089 5496 2.437281 AGAGAGAGAGAGAGAGAGCCTG 59.563 54.545 0.00 0.00 0.00 4.85
5173 5580 3.120649 GCCGTTTGCTGTCTAGTTAGTTG 60.121 47.826 0.00 0.00 36.87 3.16
5216 5623 0.525761 TAGGTAACCGAACCGAACCG 59.474 55.000 0.00 0.00 44.77 4.44
5217 5624 1.178534 AGGTAACCGAACCGAACCGA 61.179 55.000 0.00 0.00 44.77 4.69
5218 5625 0.319469 GGTAACCGAACCGAACCGAA 60.319 55.000 0.00 0.00 0.00 4.30
5219 5626 0.784178 GTAACCGAACCGAACCGAAC 59.216 55.000 0.00 0.00 0.00 3.95
5220 5627 0.387202 TAACCGAACCGAACCGAACA 59.613 50.000 0.00 0.00 0.00 3.18
5247 5672 1.653114 CCGTTTTGCTGTGTGTGTTTG 59.347 47.619 0.00 0.00 0.00 2.93
5332 5758 1.139947 GTCTGCTCCTACCTGTCGC 59.860 63.158 0.00 0.00 0.00 5.19
5343 5769 0.400213 ACCTGTCGCCCTGAATTGAA 59.600 50.000 0.00 0.00 0.00 2.69
5359 5785 1.838112 TGAATTGTGATGGGACCTGC 58.162 50.000 0.00 0.00 0.00 4.85
5360 5786 1.106285 GAATTGTGATGGGACCTGCC 58.894 55.000 0.00 0.00 0.00 4.85
5361 5787 0.706433 AATTGTGATGGGACCTGCCT 59.294 50.000 0.00 0.00 36.66 4.75
5362 5788 0.033796 ATTGTGATGGGACCTGCCTG 60.034 55.000 0.00 0.00 36.66 4.85
5363 5789 1.426251 TTGTGATGGGACCTGCCTGT 61.426 55.000 0.00 0.00 36.66 4.00
5364 5790 0.546507 TGTGATGGGACCTGCCTGTA 60.547 55.000 0.00 0.00 36.66 2.74
5365 5791 0.618458 GTGATGGGACCTGCCTGTAA 59.382 55.000 0.00 0.00 36.66 2.41
5366 5792 1.212935 GTGATGGGACCTGCCTGTAAT 59.787 52.381 0.00 0.00 36.66 1.89
5367 5793 1.490490 TGATGGGACCTGCCTGTAATC 59.510 52.381 0.00 0.00 36.66 1.75
5371 5797 1.202818 GGGACCTGCCTGTAATCATCC 60.203 57.143 0.00 0.00 36.66 3.51
5377 5803 3.474600 CTGCCTGTAATCATCCTCCTTG 58.525 50.000 0.00 0.00 0.00 3.61
5443 5869 6.631314 GCCATGTTCCTTTCTTCTGAGAGATA 60.631 42.308 0.00 0.00 32.44 1.98
5449 5879 6.857956 TCCTTTCTTCTGAGAGATACTTTCG 58.142 40.000 0.00 0.00 32.44 3.46
5476 5910 2.157738 CTTTGAGCTTCCAGTTCAGGG 58.842 52.381 0.00 0.00 36.80 4.45
5487 5921 0.615850 AGTTCAGGGGAGCTTGTAGC 59.384 55.000 0.00 0.00 42.84 3.58
5500 5934 3.462021 GCTTGTAGCTTCATAGGTCTGG 58.538 50.000 0.00 0.00 38.45 3.86
5536 5970 4.911390 AGAAGGGGACATGTTTAGTTCAG 58.089 43.478 0.00 0.00 0.00 3.02
5568 6024 4.322198 GGAAGTGGACATGTGAATGCAAAT 60.322 41.667 1.15 0.00 0.00 2.32
5672 6131 7.660059 CATCAGTGCAAAGATTTATCAAAACG 58.340 34.615 0.00 0.00 0.00 3.60
5710 6202 0.661020 CAACGACTGCTTTTCCGGTT 59.339 50.000 0.00 0.00 0.00 4.44
5720 6212 1.200020 CTTTTCCGGTTCATGACAGGC 59.800 52.381 0.00 0.00 42.63 4.85
5744 6236 3.527253 ACTGATCCCATCCACCACAAATA 59.473 43.478 0.00 0.00 0.00 1.40
5758 6256 8.875168 TCCACCACAAATATATTTCTTTTTGGT 58.125 29.630 7.76 11.69 34.23 3.67
5849 6359 4.464008 ACATGTGACAGGTCAAAGTCAAT 58.536 39.130 3.28 0.00 45.38 2.57
5925 6441 1.742761 TGCTAGCTGGCATCACTTTC 58.257 50.000 22.10 0.00 37.29 2.62
6034 6614 2.780065 TGCAGCAAGTAAAGCACAAG 57.220 45.000 0.00 0.00 31.05 3.16
6035 6615 1.269206 TGCAGCAAGTAAAGCACAAGC 60.269 47.619 0.00 0.00 42.56 4.01
6048 6628 3.136808 GCACAAGCTACAGCATTTACC 57.863 47.619 3.70 0.00 45.16 2.85
6049 6629 2.749621 GCACAAGCTACAGCATTTACCT 59.250 45.455 3.70 0.00 45.16 3.08
6097 6679 4.518970 ACATTTTGTCTACCGTCAAATGCT 59.481 37.500 0.00 0.00 34.30 3.79
6116 6724 9.453325 CAAATGCTTGTAAAAATCTTGCAAAAT 57.547 25.926 0.00 0.00 32.66 1.82
6195 6804 1.103398 ACCAGGCGGAATAGCAATGC 61.103 55.000 0.00 0.00 39.27 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.986929 ACAAGGGAATTATGAGGAATTAGAAG 57.013 34.615 0.00 0.00 0.00 2.85
3 4 8.787852 GCTAACAAGGGAATTATGAGGAATTAG 58.212 37.037 0.00 0.00 0.00 1.73
4 5 7.724061 GGCTAACAAGGGAATTATGAGGAATTA 59.276 37.037 0.00 0.00 0.00 1.40
5 6 6.551227 GGCTAACAAGGGAATTATGAGGAATT 59.449 38.462 0.00 0.00 0.00 2.17
6 7 6.071320 GGCTAACAAGGGAATTATGAGGAAT 58.929 40.000 0.00 0.00 0.00 3.01
7 8 5.445964 GGCTAACAAGGGAATTATGAGGAA 58.554 41.667 0.00 0.00 0.00 3.36
8 9 4.141251 GGGCTAACAAGGGAATTATGAGGA 60.141 45.833 0.00 0.00 0.00 3.71
9 10 4.141158 AGGGCTAACAAGGGAATTATGAGG 60.141 45.833 0.00 0.00 0.00 3.86
10 11 5.053978 AGGGCTAACAAGGGAATTATGAG 57.946 43.478 0.00 0.00 0.00 2.90
11 12 4.141251 GGAGGGCTAACAAGGGAATTATGA 60.141 45.833 0.00 0.00 0.00 2.15
12 13 4.145052 GGAGGGCTAACAAGGGAATTATG 58.855 47.826 0.00 0.00 0.00 1.90
13 14 3.791545 TGGAGGGCTAACAAGGGAATTAT 59.208 43.478 0.00 0.00 0.00 1.28
14 15 3.194620 TGGAGGGCTAACAAGGGAATTA 58.805 45.455 0.00 0.00 0.00 1.40
15 16 2.000048 TGGAGGGCTAACAAGGGAATT 59.000 47.619 0.00 0.00 0.00 2.17
16 17 1.566231 CTGGAGGGCTAACAAGGGAAT 59.434 52.381 0.00 0.00 0.00 3.01
17 18 0.991920 CTGGAGGGCTAACAAGGGAA 59.008 55.000 0.00 0.00 0.00 3.97
18 19 0.118346 TCTGGAGGGCTAACAAGGGA 59.882 55.000 0.00 0.00 0.00 4.20
19 20 0.991920 TTCTGGAGGGCTAACAAGGG 59.008 55.000 0.00 0.00 0.00 3.95
20 21 2.879103 TTTCTGGAGGGCTAACAAGG 57.121 50.000 0.00 0.00 0.00 3.61
21 22 3.507622 CCTTTTTCTGGAGGGCTAACAAG 59.492 47.826 0.00 0.00 0.00 3.16
22 23 3.496331 CCTTTTTCTGGAGGGCTAACAA 58.504 45.455 0.00 0.00 0.00 2.83
23 24 2.225017 CCCTTTTTCTGGAGGGCTAACA 60.225 50.000 0.00 0.00 45.72 2.41
24 25 2.447443 CCCTTTTTCTGGAGGGCTAAC 58.553 52.381 0.00 0.00 45.72 2.34
25 26 2.899303 CCCTTTTTCTGGAGGGCTAA 57.101 50.000 0.00 0.00 45.72 3.09
30 31 7.122048 AGAGATAATTTCCCTTTTTCTGGAGG 58.878 38.462 0.00 0.00 30.91 4.30
31 32 8.052141 AGAGAGATAATTTCCCTTTTTCTGGAG 58.948 37.037 0.00 0.00 30.91 3.86
32 33 7.933223 AGAGAGATAATTTCCCTTTTTCTGGA 58.067 34.615 0.00 0.00 0.00 3.86
33 34 7.284261 GGAGAGAGATAATTTCCCTTTTTCTGG 59.716 40.741 0.00 0.00 0.00 3.86
34 35 8.052141 AGGAGAGAGATAATTTCCCTTTTTCTG 58.948 37.037 0.00 0.00 0.00 3.02
35 36 8.052141 CAGGAGAGAGATAATTTCCCTTTTTCT 58.948 37.037 0.00 0.00 0.00 2.52
36 37 8.049721 TCAGGAGAGAGATAATTTCCCTTTTTC 58.950 37.037 0.00 0.00 0.00 2.29
37 38 7.933223 TCAGGAGAGAGATAATTTCCCTTTTT 58.067 34.615 0.00 0.00 0.00 1.94
38 39 7.516450 TCAGGAGAGAGATAATTTCCCTTTT 57.484 36.000 0.00 0.00 0.00 2.27
39 40 7.704359 ATCAGGAGAGAGATAATTTCCCTTT 57.296 36.000 0.00 0.00 0.00 3.11
40 41 7.128573 ACAATCAGGAGAGAGATAATTTCCCTT 59.871 37.037 0.00 0.00 0.00 3.95
41 42 6.619023 ACAATCAGGAGAGAGATAATTTCCCT 59.381 38.462 0.00 0.00 0.00 4.20
42 43 6.836242 ACAATCAGGAGAGAGATAATTTCCC 58.164 40.000 0.00 0.00 0.00 3.97
43 44 7.656948 CAGACAATCAGGAGAGAGATAATTTCC 59.343 40.741 0.00 0.00 0.00 3.13
44 45 8.203485 ACAGACAATCAGGAGAGAGATAATTTC 58.797 37.037 0.00 0.00 0.00 2.17
45 46 8.088463 ACAGACAATCAGGAGAGAGATAATTT 57.912 34.615 0.00 0.00 0.00 1.82
46 47 7.673641 ACAGACAATCAGGAGAGAGATAATT 57.326 36.000 0.00 0.00 0.00 1.40
47 48 8.954834 ATACAGACAATCAGGAGAGAGATAAT 57.045 34.615 0.00 0.00 0.00 1.28
48 49 8.224025 AGATACAGACAATCAGGAGAGAGATAA 58.776 37.037 0.00 0.00 0.00 1.75
49 50 7.754624 AGATACAGACAATCAGGAGAGAGATA 58.245 38.462 0.00 0.00 0.00 1.98
50 51 6.613699 AGATACAGACAATCAGGAGAGAGAT 58.386 40.000 0.00 0.00 0.00 2.75
51 52 6.012337 AGATACAGACAATCAGGAGAGAGA 57.988 41.667 0.00 0.00 0.00 3.10
52 53 6.064060 AGAGATACAGACAATCAGGAGAGAG 58.936 44.000 0.00 0.00 0.00 3.20
53 54 6.012337 AGAGATACAGACAATCAGGAGAGA 57.988 41.667 0.00 0.00 0.00 3.10
54 55 6.547141 AGAAGAGATACAGACAATCAGGAGAG 59.453 42.308 0.00 0.00 0.00 3.20
55 56 6.430864 AGAAGAGATACAGACAATCAGGAGA 58.569 40.000 0.00 0.00 0.00 3.71
56 57 6.713762 AGAAGAGATACAGACAATCAGGAG 57.286 41.667 0.00 0.00 0.00 3.69
57 58 6.438741 ACAAGAAGAGATACAGACAATCAGGA 59.561 38.462 0.00 0.00 0.00 3.86
58 59 6.638610 ACAAGAAGAGATACAGACAATCAGG 58.361 40.000 0.00 0.00 0.00 3.86
59 60 7.434897 GCTACAAGAAGAGATACAGACAATCAG 59.565 40.741 0.00 0.00 0.00 2.90
60 61 7.093771 TGCTACAAGAAGAGATACAGACAATCA 60.094 37.037 0.00 0.00 0.00 2.57
61 62 7.261325 TGCTACAAGAAGAGATACAGACAATC 58.739 38.462 0.00 0.00 0.00 2.67
62 63 7.175347 TGCTACAAGAAGAGATACAGACAAT 57.825 36.000 0.00 0.00 0.00 2.71
63 64 6.590234 TGCTACAAGAAGAGATACAGACAA 57.410 37.500 0.00 0.00 0.00 3.18
64 65 6.590234 TTGCTACAAGAAGAGATACAGACA 57.410 37.500 0.00 0.00 0.00 3.41
65 66 7.815068 TCTTTTGCTACAAGAAGAGATACAGAC 59.185 37.037 0.00 0.00 0.00 3.51
66 67 7.896811 TCTTTTGCTACAAGAAGAGATACAGA 58.103 34.615 0.00 0.00 0.00 3.41
67 68 8.539770 TTCTTTTGCTACAAGAAGAGATACAG 57.460 34.615 2.53 0.00 35.71 2.74
76 77 8.691661 ATACTTTCCTTCTTTTGCTACAAGAA 57.308 30.769 5.71 5.71 37.82 2.52
77 78 8.157476 AGATACTTTCCTTCTTTTGCTACAAGA 58.843 33.333 0.00 0.00 0.00 3.02
78 79 8.329203 AGATACTTTCCTTCTTTTGCTACAAG 57.671 34.615 0.00 0.00 0.00 3.16
79 80 8.157476 AGAGATACTTTCCTTCTTTTGCTACAA 58.843 33.333 0.00 0.00 0.00 2.41
80 81 7.680730 AGAGATACTTTCCTTCTTTTGCTACA 58.319 34.615 0.00 0.00 0.00 2.74
81 82 8.038351 AGAGAGATACTTTCCTTCTTTTGCTAC 58.962 37.037 0.00 0.00 0.00 3.58
82 83 8.140112 AGAGAGATACTTTCCTTCTTTTGCTA 57.860 34.615 0.00 0.00 0.00 3.49
83 84 7.014988 AGAGAGATACTTTCCTTCTTTTGCT 57.985 36.000 0.00 0.00 0.00 3.91
84 85 7.102993 AGAGAGAGATACTTTCCTTCTTTTGC 58.897 38.462 0.00 0.00 31.12 3.68
85 86 7.487829 CGAGAGAGAGATACTTTCCTTCTTTTG 59.512 40.741 0.00 0.00 31.12 2.44
86 87 7.394923 TCGAGAGAGAGATACTTTCCTTCTTTT 59.605 37.037 0.00 0.00 34.84 2.27
87 88 6.887545 TCGAGAGAGAGATACTTTCCTTCTTT 59.112 38.462 0.00 0.00 34.84 2.52
88 89 6.419791 TCGAGAGAGAGATACTTTCCTTCTT 58.580 40.000 0.00 0.00 34.84 2.52
89 90 5.996644 TCGAGAGAGAGATACTTTCCTTCT 58.003 41.667 0.00 0.00 34.84 2.85
101 102 8.442921 ATGAGATACATGCAATCGAGAGAGAGA 61.443 40.741 0.00 0.00 40.00 3.10
102 103 6.349528 ATGAGATACATGCAATCGAGAGAGAG 60.350 42.308 0.00 0.00 40.00 3.20
103 104 5.476254 ATGAGATACATGCAATCGAGAGAGA 59.524 40.000 0.00 0.00 40.00 3.10
104 105 5.712004 ATGAGATACATGCAATCGAGAGAG 58.288 41.667 0.00 0.00 40.00 3.20
105 106 5.718724 ATGAGATACATGCAATCGAGAGA 57.281 39.130 0.00 0.00 40.61 3.10
106 107 6.619744 AGTATGAGATACATGCAATCGAGAG 58.380 40.000 0.00 0.00 42.58 3.20
107 108 6.581171 AGTATGAGATACATGCAATCGAGA 57.419 37.500 0.00 0.00 42.58 4.04
108 109 7.148672 GGAAAGTATGAGATACATGCAATCGAG 60.149 40.741 0.00 0.00 42.58 4.04
109 110 6.646653 GGAAAGTATGAGATACATGCAATCGA 59.353 38.462 0.00 0.00 42.58 3.59
110 111 6.648310 AGGAAAGTATGAGATACATGCAATCG 59.352 38.462 0.00 0.00 42.58 3.34
111 112 7.658982 TGAGGAAAGTATGAGATACATGCAATC 59.341 37.037 0.00 0.00 42.58 2.67
112 113 7.512130 TGAGGAAAGTATGAGATACATGCAAT 58.488 34.615 0.00 0.00 42.58 3.56
113 114 6.888105 TGAGGAAAGTATGAGATACATGCAA 58.112 36.000 0.00 0.00 42.58 4.08
114 115 6.484364 TGAGGAAAGTATGAGATACATGCA 57.516 37.500 0.00 0.00 42.58 3.96
115 116 6.989169 AGTTGAGGAAAGTATGAGATACATGC 59.011 38.462 0.00 0.00 40.92 4.06
163 164 9.665719 ACGAAATTATCCTTGGCAAATTTATTT 57.334 25.926 0.00 4.32 33.03 1.40
164 165 9.313118 GACGAAATTATCCTTGGCAAATTTATT 57.687 29.630 0.00 0.00 33.03 1.40
165 166 7.926018 GGACGAAATTATCCTTGGCAAATTTAT 59.074 33.333 0.00 0.00 33.03 1.40
166 167 7.123547 AGGACGAAATTATCCTTGGCAAATTTA 59.876 33.333 0.00 0.00 43.09 1.40
167 168 6.070824 AGGACGAAATTATCCTTGGCAAATTT 60.071 34.615 0.00 3.92 43.09 1.82
168 169 5.422012 AGGACGAAATTATCCTTGGCAAATT 59.578 36.000 0.00 0.00 43.09 1.82
169 170 4.956075 AGGACGAAATTATCCTTGGCAAAT 59.044 37.500 0.00 0.00 43.09 2.32
170 171 4.340617 AGGACGAAATTATCCTTGGCAAA 58.659 39.130 0.00 0.00 43.09 3.68
171 172 3.963129 AGGACGAAATTATCCTTGGCAA 58.037 40.909 0.00 0.00 43.09 4.52
172 173 3.644966 AGGACGAAATTATCCTTGGCA 57.355 42.857 0.00 0.00 43.09 4.92
173 174 4.879545 TGTTAGGACGAAATTATCCTTGGC 59.120 41.667 10.27 4.02 43.09 4.52
174 175 6.542370 ACATGTTAGGACGAAATTATCCTTGG 59.458 38.462 10.27 0.00 43.09 3.61
175 176 7.553881 ACATGTTAGGACGAAATTATCCTTG 57.446 36.000 10.27 6.29 43.09 3.61
176 177 8.575649 AAACATGTTAGGACGAAATTATCCTT 57.424 30.769 12.39 0.00 43.09 3.36
184 185 8.605746 CGGAATTATAAACATGTTAGGACGAAA 58.394 33.333 12.39 0.73 0.00 3.46
185 186 7.765360 ACGGAATTATAAACATGTTAGGACGAA 59.235 33.333 12.39 1.53 0.00 3.85
186 187 7.223193 CACGGAATTATAAACATGTTAGGACGA 59.777 37.037 12.39 0.00 0.00 4.20
187 188 7.223193 TCACGGAATTATAAACATGTTAGGACG 59.777 37.037 12.39 10.83 0.00 4.79
188 189 8.333186 GTCACGGAATTATAAACATGTTAGGAC 58.667 37.037 12.39 3.06 0.00 3.85
189 190 8.262227 AGTCACGGAATTATAAACATGTTAGGA 58.738 33.333 12.39 0.63 0.00 2.94
190 191 8.433421 AGTCACGGAATTATAAACATGTTAGG 57.567 34.615 12.39 0.00 0.00 2.69
191 192 9.702726 CAAGTCACGGAATTATAAACATGTTAG 57.297 33.333 12.39 0.00 0.00 2.34
192 193 8.670135 CCAAGTCACGGAATTATAAACATGTTA 58.330 33.333 12.39 0.00 0.00 2.41
193 194 7.175990 ACCAAGTCACGGAATTATAAACATGTT 59.824 33.333 4.92 4.92 0.00 2.71
194 195 6.657541 ACCAAGTCACGGAATTATAAACATGT 59.342 34.615 0.00 0.00 0.00 3.21
195 196 7.083875 ACCAAGTCACGGAATTATAAACATG 57.916 36.000 0.00 0.00 0.00 3.21
196 197 6.882140 TGACCAAGTCACGGAATTATAAACAT 59.118 34.615 0.00 0.00 37.67 2.71
197 198 6.231951 TGACCAAGTCACGGAATTATAAACA 58.768 36.000 0.00 0.00 37.67 2.83
198 199 6.730960 TGACCAAGTCACGGAATTATAAAC 57.269 37.500 0.00 0.00 37.67 2.01
211 212 2.110213 GGCACGGTGACCAAGTCA 59.890 61.111 13.29 0.00 40.50 3.41
212 213 1.098712 TTTGGCACGGTGACCAAGTC 61.099 55.000 25.13 0.00 46.20 3.01
213 214 0.681564 TTTTGGCACGGTGACCAAGT 60.682 50.000 25.13 0.00 46.20 3.16
214 215 0.457851 TTTTTGGCACGGTGACCAAG 59.542 50.000 25.13 0.00 46.20 3.61
215 216 1.115467 ATTTTTGGCACGGTGACCAA 58.885 45.000 23.78 23.78 44.11 3.67
216 217 1.982660 TATTTTTGGCACGGTGACCA 58.017 45.000 12.26 14.98 0.00 4.02
217 218 3.586100 ATTATTTTTGGCACGGTGACC 57.414 42.857 12.26 12.53 0.00 4.02
218 219 4.854839 GTGTATTATTTTTGGCACGGTGAC 59.145 41.667 13.29 10.30 0.00 3.67
219 220 4.082679 GGTGTATTATTTTTGGCACGGTGA 60.083 41.667 13.29 0.00 0.00 4.02
220 221 4.082463 AGGTGTATTATTTTTGGCACGGTG 60.082 41.667 3.15 3.15 0.00 4.94
221 222 4.083565 AGGTGTATTATTTTTGGCACGGT 58.916 39.130 0.00 0.00 0.00 4.83
222 223 4.712122 AGGTGTATTATTTTTGGCACGG 57.288 40.909 0.00 0.00 0.00 4.94
223 224 6.613233 TGTAAGGTGTATTATTTTTGGCACG 58.387 36.000 0.00 0.00 0.00 5.34
234 235 9.590451 CTCCGTTTCTTTATGTAAGGTGTATTA 57.410 33.333 0.00 0.00 34.46 0.98
235 236 8.316214 TCTCCGTTTCTTTATGTAAGGTGTATT 58.684 33.333 0.00 0.00 34.46 1.89
236 237 7.844009 TCTCCGTTTCTTTATGTAAGGTGTAT 58.156 34.615 0.00 0.00 34.46 2.29
237 238 7.177216 TCTCTCCGTTTCTTTATGTAAGGTGTA 59.823 37.037 0.00 0.00 34.46 2.90
238 239 6.014840 TCTCTCCGTTTCTTTATGTAAGGTGT 60.015 38.462 0.00 0.00 34.46 4.16
239 240 6.395629 TCTCTCCGTTTCTTTATGTAAGGTG 58.604 40.000 0.00 0.00 34.46 4.00
240 241 6.210984 ACTCTCTCCGTTTCTTTATGTAAGGT 59.789 38.462 0.00 0.00 34.46 3.50
241 242 6.631962 ACTCTCTCCGTTTCTTTATGTAAGG 58.368 40.000 0.00 0.00 34.46 2.69
245 246 8.291032 CGATATACTCTCTCCGTTTCTTTATGT 58.709 37.037 0.00 0.00 0.00 2.29
246 247 7.271653 GCGATATACTCTCTCCGTTTCTTTATG 59.728 40.741 0.00 0.00 0.00 1.90
247 248 7.040617 TGCGATATACTCTCTCCGTTTCTTTAT 60.041 37.037 0.00 0.00 0.00 1.40
248 249 6.261603 TGCGATATACTCTCTCCGTTTCTTTA 59.738 38.462 0.00 0.00 0.00 1.85
249 250 5.067413 TGCGATATACTCTCTCCGTTTCTTT 59.933 40.000 0.00 0.00 0.00 2.52
250 251 4.579340 TGCGATATACTCTCTCCGTTTCTT 59.421 41.667 0.00 0.00 0.00 2.52
251 252 4.135306 TGCGATATACTCTCTCCGTTTCT 58.865 43.478 0.00 0.00 0.00 2.52
252 253 4.485024 TGCGATATACTCTCTCCGTTTC 57.515 45.455 0.00 0.00 0.00 2.78
253 254 4.261656 CCTTGCGATATACTCTCTCCGTTT 60.262 45.833 0.00 0.00 0.00 3.60
254 255 3.253677 CCTTGCGATATACTCTCTCCGTT 59.746 47.826 0.00 0.00 0.00 4.44
255 256 2.814919 CCTTGCGATATACTCTCTCCGT 59.185 50.000 0.00 0.00 0.00 4.69
256 257 3.075148 TCCTTGCGATATACTCTCTCCG 58.925 50.000 0.00 0.00 0.00 4.63
257 258 5.652994 ATTCCTTGCGATATACTCTCTCC 57.347 43.478 0.00 0.00 0.00 3.71
258 259 7.918562 GGATAATTCCTTGCGATATACTCTCTC 59.081 40.741 0.00 0.00 39.14 3.20
259 260 7.397476 TGGATAATTCCTTGCGATATACTCTCT 59.603 37.037 0.00 0.00 43.07 3.10
260 261 7.548097 TGGATAATTCCTTGCGATATACTCTC 58.452 38.462 0.00 0.00 43.07 3.20
261 262 7.482169 TGGATAATTCCTTGCGATATACTCT 57.518 36.000 0.00 0.00 43.07 3.24
262 263 9.469807 CTATGGATAATTCCTTGCGATATACTC 57.530 37.037 0.00 0.00 43.07 2.59
263 264 8.982723 ACTATGGATAATTCCTTGCGATATACT 58.017 33.333 0.00 0.00 43.07 2.12
266 267 9.601217 GTTACTATGGATAATTCCTTGCGATAT 57.399 33.333 0.00 0.00 43.07 1.63
267 268 8.812972 AGTTACTATGGATAATTCCTTGCGATA 58.187 33.333 0.00 0.00 43.07 2.92
268 269 7.680730 AGTTACTATGGATAATTCCTTGCGAT 58.319 34.615 0.00 0.00 43.07 4.58
269 270 7.062749 AGTTACTATGGATAATTCCTTGCGA 57.937 36.000 0.00 0.00 43.07 5.10
270 271 8.709646 GTTAGTTACTATGGATAATTCCTTGCG 58.290 37.037 0.00 0.00 43.07 4.85
271 272 9.000486 GGTTAGTTACTATGGATAATTCCTTGC 58.000 37.037 0.00 0.00 43.07 4.01
272 273 9.204570 CGGTTAGTTACTATGGATAATTCCTTG 57.795 37.037 0.00 0.00 43.07 3.61
273 274 8.931568 ACGGTTAGTTACTATGGATAATTCCTT 58.068 33.333 0.00 0.00 43.07 3.36
274 275 8.488308 ACGGTTAGTTACTATGGATAATTCCT 57.512 34.615 0.00 0.00 43.07 3.36
275 276 7.816513 GGACGGTTAGTTACTATGGATAATTCC 59.183 40.741 0.00 0.00 42.94 3.01
276 277 8.362639 TGGACGGTTAGTTACTATGGATAATTC 58.637 37.037 0.00 0.00 0.00 2.17
277 278 8.253867 TGGACGGTTAGTTACTATGGATAATT 57.746 34.615 0.00 0.00 0.00 1.40
278 279 7.844493 TGGACGGTTAGTTACTATGGATAAT 57.156 36.000 0.00 0.00 0.00 1.28
279 280 7.844493 ATGGACGGTTAGTTACTATGGATAA 57.156 36.000 0.00 0.00 0.00 1.75
280 281 8.796475 GTTATGGACGGTTAGTTACTATGGATA 58.204 37.037 0.00 0.00 0.00 2.59
281 282 7.256083 GGTTATGGACGGTTAGTTACTATGGAT 60.256 40.741 0.00 0.00 0.00 3.41
282 283 6.040842 GGTTATGGACGGTTAGTTACTATGGA 59.959 42.308 0.00 0.00 0.00 3.41
283 284 6.218746 GGTTATGGACGGTTAGTTACTATGG 58.781 44.000 0.00 0.00 0.00 2.74
284 285 5.916883 CGGTTATGGACGGTTAGTTACTATG 59.083 44.000 0.00 0.00 0.00 2.23
285 286 5.594317 ACGGTTATGGACGGTTAGTTACTAT 59.406 40.000 0.00 0.00 38.51 2.12
286 287 4.947388 ACGGTTATGGACGGTTAGTTACTA 59.053 41.667 0.00 0.00 38.51 1.82
287 288 3.763897 ACGGTTATGGACGGTTAGTTACT 59.236 43.478 0.00 0.00 38.51 2.24
288 289 4.110036 ACGGTTATGGACGGTTAGTTAC 57.890 45.455 0.00 0.00 38.51 2.50
289 290 4.799564 AACGGTTATGGACGGTTAGTTA 57.200 40.909 0.00 0.00 46.21 2.24
290 291 3.683365 AACGGTTATGGACGGTTAGTT 57.317 42.857 0.00 0.00 46.21 2.24
295 296 0.686224 TCCAAACGGTTATGGACGGT 59.314 50.000 15.94 0.00 40.74 4.83
296 297 1.338389 ACTCCAAACGGTTATGGACGG 60.338 52.381 15.94 11.92 40.74 4.79
297 298 2.088950 ACTCCAAACGGTTATGGACG 57.911 50.000 15.94 14.42 40.74 4.79
298 299 2.486592 CCAACTCCAAACGGTTATGGAC 59.513 50.000 15.94 0.00 40.74 4.02
299 300 2.785562 CCAACTCCAAACGGTTATGGA 58.214 47.619 17.72 17.72 43.32 3.41
300 301 1.201414 GCCAACTCCAAACGGTTATGG 59.799 52.381 12.84 12.84 38.09 2.74
301 302 1.201414 GGCCAACTCCAAACGGTTATG 59.799 52.381 0.00 0.00 0.00 1.90
302 303 1.541379 GGCCAACTCCAAACGGTTAT 58.459 50.000 0.00 0.00 0.00 1.89
303 304 0.537828 GGGCCAACTCCAAACGGTTA 60.538 55.000 4.39 0.00 0.00 2.85
304 305 1.830847 GGGCCAACTCCAAACGGTT 60.831 57.895 4.39 0.00 0.00 4.44
305 306 2.203437 GGGCCAACTCCAAACGGT 60.203 61.111 4.39 0.00 0.00 4.83
306 307 1.805428 CTTGGGCCAACTCCAAACGG 61.805 60.000 16.66 0.00 42.91 4.44
307 308 1.659794 CTTGGGCCAACTCCAAACG 59.340 57.895 16.66 0.00 42.91 3.60
308 309 1.471829 CCCTTGGGCCAACTCCAAAC 61.472 60.000 16.66 0.00 42.91 2.93
309 310 1.152355 CCCTTGGGCCAACTCCAAA 60.152 57.895 16.66 0.00 42.91 3.28
310 311 2.080336 CTCCCTTGGGCCAACTCCAA 62.080 60.000 16.66 0.00 41.50 3.53
311 312 2.451493 TCCCTTGGGCCAACTCCA 60.451 61.111 16.66 0.00 0.00 3.86
312 313 2.356667 CTCCCTTGGGCCAACTCC 59.643 66.667 16.66 0.00 0.00 3.85
313 314 2.356667 CCTCCCTTGGGCCAACTC 59.643 66.667 16.66 0.00 0.00 3.01
314 315 3.984732 GCCTCCCTTGGGCCAACT 61.985 66.667 16.66 0.00 43.49 3.16
320 321 2.230130 TTGTTATTGCCTCCCTTGGG 57.770 50.000 0.00 0.00 0.00 4.12
321 322 2.896685 TGTTTGTTATTGCCTCCCTTGG 59.103 45.455 0.00 0.00 0.00 3.61
322 323 4.599047 TTGTTTGTTATTGCCTCCCTTG 57.401 40.909 0.00 0.00 0.00 3.61
323 324 4.592778 ACATTGTTTGTTATTGCCTCCCTT 59.407 37.500 0.00 0.00 33.74 3.95
324 325 4.159557 ACATTGTTTGTTATTGCCTCCCT 58.840 39.130 0.00 0.00 33.74 4.20
325 326 4.494484 GACATTGTTTGTTATTGCCTCCC 58.506 43.478 0.00 0.00 39.18 4.30
326 327 4.220602 AGGACATTGTTTGTTATTGCCTCC 59.779 41.667 0.00 0.00 39.18 4.30
327 328 5.391312 AGGACATTGTTTGTTATTGCCTC 57.609 39.130 0.00 0.00 39.18 4.70
328 329 4.220602 GGAGGACATTGTTTGTTATTGCCT 59.779 41.667 0.00 0.00 39.18 4.75
329 330 4.021544 TGGAGGACATTGTTTGTTATTGCC 60.022 41.667 0.00 0.00 39.18 4.52
330 331 5.132897 TGGAGGACATTGTTTGTTATTGC 57.867 39.130 0.00 0.00 39.18 3.56
331 332 5.925969 GGTTGGAGGACATTGTTTGTTATTG 59.074 40.000 0.00 0.00 39.18 1.90
332 333 5.838521 AGGTTGGAGGACATTGTTTGTTATT 59.161 36.000 0.00 0.00 39.18 1.40
333 334 5.243730 CAGGTTGGAGGACATTGTTTGTTAT 59.756 40.000 0.00 0.00 39.18 1.89
334 335 4.582656 CAGGTTGGAGGACATTGTTTGTTA 59.417 41.667 0.00 0.00 39.18 2.41
335 336 3.384467 CAGGTTGGAGGACATTGTTTGTT 59.616 43.478 0.00 0.00 39.18 2.83
336 337 2.958355 CAGGTTGGAGGACATTGTTTGT 59.042 45.455 0.00 0.00 42.79 2.83
337 338 2.288395 GCAGGTTGGAGGACATTGTTTG 60.288 50.000 0.00 0.00 0.00 2.93
338 339 1.963515 GCAGGTTGGAGGACATTGTTT 59.036 47.619 0.00 0.00 0.00 2.83
339 340 1.145738 AGCAGGTTGGAGGACATTGTT 59.854 47.619 0.00 0.00 0.00 2.83
340 341 0.773644 AGCAGGTTGGAGGACATTGT 59.226 50.000 0.00 0.00 0.00 2.71
341 342 1.457346 GAGCAGGTTGGAGGACATTG 58.543 55.000 0.00 0.00 0.00 2.82
342 343 0.329596 GGAGCAGGTTGGAGGACATT 59.670 55.000 0.00 0.00 0.00 2.71
343 344 0.842030 TGGAGCAGGTTGGAGGACAT 60.842 55.000 0.00 0.00 0.00 3.06
344 345 0.842030 ATGGAGCAGGTTGGAGGACA 60.842 55.000 0.00 0.00 0.00 4.02
373 374 1.448893 GAACAAGGGCCGCGATACA 60.449 57.895 8.23 0.00 0.00 2.29
374 375 1.153429 AGAACAAGGGCCGCGATAC 60.153 57.895 8.23 0.00 0.00 2.24
375 376 1.153449 CAGAACAAGGGCCGCGATA 60.153 57.895 8.23 0.00 0.00 2.92
387 388 2.264480 CCGTCGGATGCCAGAACA 59.736 61.111 4.91 0.00 0.00 3.18
415 416 2.701107 TGTTTCTGTGACGTGTTTGGA 58.299 42.857 0.00 0.00 0.00 3.53
455 457 7.451255 TGATTGAATCTTTGGTTGTGGATAAGT 59.549 33.333 6.73 0.00 0.00 2.24
479 481 0.108041 GTCGGCTTCGGGGTTATTGA 60.108 55.000 0.00 0.00 34.13 2.57
534 567 3.572255 TCCCTGTTATGAAAAAGTGGCAC 59.428 43.478 10.29 10.29 0.00 5.01
568 603 8.349983 GCCCATTCTCGTAATTTGTTGTTATAT 58.650 33.333 0.00 0.00 0.00 0.86
569 604 7.201750 GGCCCATTCTCGTAATTTGTTGTTATA 60.202 37.037 0.00 0.00 0.00 0.98
570 605 6.405397 GGCCCATTCTCGTAATTTGTTGTTAT 60.405 38.462 0.00 0.00 0.00 1.89
571 606 5.106078 GGCCCATTCTCGTAATTTGTTGTTA 60.106 40.000 0.00 0.00 0.00 2.41
572 607 4.321675 GGCCCATTCTCGTAATTTGTTGTT 60.322 41.667 0.00 0.00 0.00 2.83
574 609 3.443681 AGGCCCATTCTCGTAATTTGTTG 59.556 43.478 0.00 0.00 0.00 3.33
575 610 3.694566 GAGGCCCATTCTCGTAATTTGTT 59.305 43.478 0.00 0.00 0.00 2.83
646 965 6.536941 GCGAGTGAGGAAGAAAGAAATAATCT 59.463 38.462 0.00 0.00 41.32 2.40
647 966 6.238239 GGCGAGTGAGGAAGAAAGAAATAATC 60.238 42.308 0.00 0.00 0.00 1.75
648 967 5.586643 GGCGAGTGAGGAAGAAAGAAATAAT 59.413 40.000 0.00 0.00 0.00 1.28
649 968 4.935808 GGCGAGTGAGGAAGAAAGAAATAA 59.064 41.667 0.00 0.00 0.00 1.40
650 969 4.223032 AGGCGAGTGAGGAAGAAAGAAATA 59.777 41.667 0.00 0.00 0.00 1.40
651 970 3.008485 AGGCGAGTGAGGAAGAAAGAAAT 59.992 43.478 0.00 0.00 0.00 2.17
652 971 2.368875 AGGCGAGTGAGGAAGAAAGAAA 59.631 45.455 0.00 0.00 0.00 2.52
653 972 1.971357 AGGCGAGTGAGGAAGAAAGAA 59.029 47.619 0.00 0.00 0.00 2.52
654 973 1.546476 GAGGCGAGTGAGGAAGAAAGA 59.454 52.381 0.00 0.00 0.00 2.52
655 974 1.404851 GGAGGCGAGTGAGGAAGAAAG 60.405 57.143 0.00 0.00 0.00 2.62
656 975 0.608640 GGAGGCGAGTGAGGAAGAAA 59.391 55.000 0.00 0.00 0.00 2.52
657 976 1.595993 CGGAGGCGAGTGAGGAAGAA 61.596 60.000 0.00 0.00 0.00 2.52
658 977 2.046864 CGGAGGCGAGTGAGGAAGA 61.047 63.158 0.00 0.00 0.00 2.87
659 978 2.272918 GACGGAGGCGAGTGAGGAAG 62.273 65.000 0.00 0.00 0.00 3.46
660 979 2.282958 ACGGAGGCGAGTGAGGAA 60.283 61.111 0.00 0.00 0.00 3.36
661 980 2.750637 GACGGAGGCGAGTGAGGA 60.751 66.667 0.00 0.00 0.00 3.71
702 1027 6.492087 AGGAAGAAGAAGAATATACGAGGAGG 59.508 42.308 0.00 0.00 0.00 4.30
739 1065 0.246635 CGTTGGAGATTGGGACGAGT 59.753 55.000 0.00 0.00 35.90 4.18
741 1067 0.970640 TTCGTTGGAGATTGGGACGA 59.029 50.000 0.00 0.00 40.50 4.20
887 1218 3.243128 GTCCAAGAAGGGCGCTTTA 57.757 52.632 17.99 0.00 38.24 1.85
896 1227 0.109226 GTCCTCCGTCGTCCAAGAAG 60.109 60.000 0.00 0.00 0.00 2.85
907 1238 1.533469 CGAACAGGGAAGTCCTCCGT 61.533 60.000 0.00 0.00 46.12 4.69
908 1239 1.215647 CGAACAGGGAAGTCCTCCG 59.784 63.158 0.00 0.00 46.12 4.63
913 1247 2.552031 GCCTAATCGAACAGGGAAGTC 58.448 52.381 15.35 0.00 32.15 3.01
914 1248 1.134788 CGCCTAATCGAACAGGGAAGT 60.135 52.381 15.35 0.00 32.15 3.01
916 1250 0.177141 CCGCCTAATCGAACAGGGAA 59.823 55.000 15.35 0.00 32.15 3.97
917 1251 0.974010 ACCGCCTAATCGAACAGGGA 60.974 55.000 15.35 0.00 32.15 4.20
918 1252 0.529992 GACCGCCTAATCGAACAGGG 60.530 60.000 15.35 5.50 32.15 4.45
919 1253 0.529992 GGACCGCCTAATCGAACAGG 60.530 60.000 10.57 10.57 34.85 4.00
920 1254 0.460311 AGGACCGCCTAATCGAACAG 59.540 55.000 0.00 0.00 44.74 3.16
921 1255 0.174845 CAGGACCGCCTAATCGAACA 59.825 55.000 0.00 0.00 44.80 3.18
922 1256 0.458669 TCAGGACCGCCTAATCGAAC 59.541 55.000 0.00 0.00 44.80 3.95
935 1269 4.828925 GCGCAGGAGCCTCAGGAC 62.829 72.222 0.30 0.00 37.52 3.85
958 1292 3.155167 CACCCCCTCGGCCTCTAC 61.155 72.222 0.00 0.00 33.26 2.59
968 1302 4.345286 AGCCTCAGAGCACCCCCT 62.345 66.667 0.00 0.00 34.23 4.79
969 1303 3.791586 GAGCCTCAGAGCACCCCC 61.792 72.222 0.00 0.00 34.23 5.40
972 1306 1.739562 CAACGAGCCTCAGAGCACC 60.740 63.158 0.00 0.00 34.23 5.01
973 1307 0.108424 ATCAACGAGCCTCAGAGCAC 60.108 55.000 0.00 0.00 34.23 4.40
974 1308 0.108472 CATCAACGAGCCTCAGAGCA 60.108 55.000 0.00 0.00 34.23 4.26
975 1309 1.427592 GCATCAACGAGCCTCAGAGC 61.428 60.000 0.00 0.00 0.00 4.09
1348 1703 2.039624 GGAGAGAGAGGGGGTGCA 59.960 66.667 0.00 0.00 0.00 4.57
1349 1704 3.151022 CGGAGAGAGAGGGGGTGC 61.151 72.222 0.00 0.00 0.00 5.01
1350 1705 3.151022 GCGGAGAGAGAGGGGGTG 61.151 72.222 0.00 0.00 0.00 4.61
1351 1706 4.824515 CGCGGAGAGAGAGGGGGT 62.825 72.222 0.00 0.00 0.00 4.95
1352 1707 3.417167 TACGCGGAGAGAGAGGGGG 62.417 68.421 12.47 0.00 0.00 5.40
1353 1708 2.188161 GTACGCGGAGAGAGAGGGG 61.188 68.421 12.47 0.00 0.00 4.79
1354 1709 1.153127 AGTACGCGGAGAGAGAGGG 60.153 63.158 12.47 0.00 0.00 4.30
1355 1710 2.018544 CAGTACGCGGAGAGAGAGG 58.981 63.158 12.47 0.00 0.00 3.69
1356 1711 1.353804 GCAGTACGCGGAGAGAGAG 59.646 63.158 12.47 0.00 0.00 3.20
1357 1712 3.499050 GCAGTACGCGGAGAGAGA 58.501 61.111 12.47 0.00 0.00 3.10
1430 1791 3.007979 TCCATCGATCCAATTACGACG 57.992 47.619 0.00 0.00 38.79 5.12
1431 1792 5.236478 ACAAATCCATCGATCCAATTACGAC 59.764 40.000 0.00 0.00 38.79 4.34
1432 1793 5.364778 ACAAATCCATCGATCCAATTACGA 58.635 37.500 0.00 0.00 40.18 3.43
1566 1929 1.956477 CATGACCGGGGATGAAATTCC 59.044 52.381 6.32 0.00 43.38 3.01
1675 2038 6.321181 TGTTGTTGTTCTAAAAGGCAAGATCT 59.679 34.615 0.00 0.00 0.00 2.75
1690 2053 6.473397 TGGATTGTTTTGTTGTTGTTGTTC 57.527 33.333 0.00 0.00 0.00 3.18
1695 2058 3.938334 GCCTTGGATTGTTTTGTTGTTGT 59.062 39.130 0.00 0.00 0.00 3.32
1696 2059 3.937706 TGCCTTGGATTGTTTTGTTGTTG 59.062 39.130 0.00 0.00 0.00 3.33
1697 2060 4.213564 TGCCTTGGATTGTTTTGTTGTT 57.786 36.364 0.00 0.00 0.00 2.83
1698 2061 3.902881 TGCCTTGGATTGTTTTGTTGT 57.097 38.095 0.00 0.00 0.00 3.32
1816 2179 2.798283 CACTGCTTGCACATTTTTCAGG 59.202 45.455 0.00 0.00 0.00 3.86
1826 2189 1.066257 CCAACCACACTGCTTGCAC 59.934 57.895 0.00 0.00 0.00 4.57
1852 2215 7.114811 CCCATCGTCACAAAAACTGAAATAAAG 59.885 37.037 0.00 0.00 0.00 1.85
1876 2239 7.503902 AGAAAAGTGGCTAAGATCAATAATCCC 59.496 37.037 0.00 0.00 34.67 3.85
1904 2267 5.538053 TGAACATCACAATAGCCAAAAAGGA 59.462 36.000 0.00 0.00 41.22 3.36
1972 2336 2.384899 GCTAAACCGATTTGGCGATC 57.615 50.000 0.00 0.00 41.68 3.69
2006 2370 7.047891 CCTCATTGTTACCAGTAAGCTATTGA 58.952 38.462 0.00 0.00 0.00 2.57
2007 2371 6.823689 ACCTCATTGTTACCAGTAAGCTATTG 59.176 38.462 0.00 0.00 0.00 1.90
2046 2410 5.877012 ACTCAGTTGCCTAGACAAACATATG 59.123 40.000 0.00 0.00 0.00 1.78
2199 2563 7.170998 CGAAGCCCGACAAGAGTATAATTAATT 59.829 37.037 5.89 5.89 41.76 1.40
2606 2970 6.077838 GGTCATTTTGCACTAGTTTAACTCG 58.922 40.000 0.00 0.00 0.00 4.18
2633 2997 6.514048 GCCTGCCATGTAGAGATTTAAATGAC 60.514 42.308 5.17 0.00 0.00 3.06
2650 3014 0.901580 CAAAACCAGGAGCCTGCCAT 60.902 55.000 11.07 0.00 42.35 4.40
2660 3024 8.357402 ACAATAGTTTAACTAAGCAAAACCAGG 58.643 33.333 8.99 0.00 33.89 4.45
2690 3054 3.889196 TGAACGCTGTGGTCAATTTAC 57.111 42.857 6.46 0.00 0.00 2.01
2691 3055 4.902443 TTTGAACGCTGTGGTCAATTTA 57.098 36.364 21.03 5.23 0.00 1.40
2692 3056 3.791973 TTTGAACGCTGTGGTCAATTT 57.208 38.095 21.03 0.00 0.00 1.82
2693 3057 3.305335 GGATTTGAACGCTGTGGTCAATT 60.305 43.478 21.03 17.40 0.00 2.32
2694 3058 2.228822 GGATTTGAACGCTGTGGTCAAT 59.771 45.455 21.03 11.88 0.00 2.57
2706 3070 2.416431 GCCTGCTCATGTGGATTTGAAC 60.416 50.000 0.00 0.00 0.00 3.18
2740 3105 8.901748 CATTCCAATTTACACTTGTTTAACTCG 58.098 33.333 0.00 0.00 0.00 4.18
2750 3115 8.458573 TGTTCTACACATTCCAATTTACACTT 57.541 30.769 0.00 0.00 0.00 3.16
2927 3292 2.105006 TCCTCTTCAACAGCAGATGC 57.895 50.000 0.00 0.00 42.49 3.91
2937 3302 7.995488 GGAGGATAATCTCAATTTCCTCTTCAA 59.005 37.037 16.11 0.00 42.05 2.69
2986 3351 0.976073 GTGATGGGGAAGACTCGGGA 60.976 60.000 0.00 0.00 0.00 5.14
2989 3354 1.550524 TGAAGTGATGGGGAAGACTCG 59.449 52.381 0.00 0.00 0.00 4.18
3320 3686 5.833340 TCTCTCTTAGGCTTCTTAGACCTT 58.167 41.667 0.00 0.00 34.92 3.50
3333 3699 3.295093 TGCTGTCATCCTCTCTCTTAGG 58.705 50.000 0.00 0.00 35.26 2.69
3584 3950 1.995376 TCTCTACATGATAGCCGGCA 58.005 50.000 31.54 15.56 0.00 5.69
3649 4015 2.097629 GGAAGTATGCTCCTTTTTCGCC 59.902 50.000 0.00 0.00 0.00 5.54
3707 4073 9.573166 TCTTCTCCATTCTTGTTCTTCAATAAA 57.427 29.630 0.00 0.00 35.35 1.40
3710 4076 6.658391 CCTCTTCTCCATTCTTGTTCTTCAAT 59.342 38.462 0.00 0.00 35.35 2.57
3728 4094 3.654806 CAATATCATCCCCACCCTCTTCT 59.345 47.826 0.00 0.00 0.00 2.85
3740 4106 4.742167 CGGCGATCATAGTCAATATCATCC 59.258 45.833 0.00 0.00 0.00 3.51
3761 4127 2.434702 ACCAGAAGAGGTTAATAGCCGG 59.565 50.000 0.00 0.00 39.34 6.13
3781 4147 2.353323 GTACCCCAGAAACGGATTCAC 58.647 52.381 0.75 0.00 40.72 3.18
3835 4202 8.034804 ACAAAAGCAGTAAACAGAAAGTGAAAT 58.965 29.630 0.00 0.00 0.00 2.17
3836 4203 7.328249 CACAAAAGCAGTAAACAGAAAGTGAAA 59.672 33.333 0.00 0.00 0.00 2.69
3859 4226 1.799933 AACAAAGGGAAATGGGCACA 58.200 45.000 0.00 0.00 0.00 4.57
3860 4227 2.928801 AAACAAAGGGAAATGGGCAC 57.071 45.000 0.00 0.00 0.00 5.01
4279 4660 2.213499 CGGATCTTGGCATGAAGTACC 58.787 52.381 7.20 7.84 0.00 3.34
4387 4768 1.864565 TATCGAATGACATGGCACCG 58.135 50.000 16.57 16.57 0.00 4.94
4444 4828 7.178628 ACAACATAAAGAGTAGGCTTCTCAGTA 59.821 37.037 21.16 13.19 34.73 2.74
4516 4900 4.798907 CCAAGTGTGTCGATGATGTAGTAC 59.201 45.833 0.00 0.00 0.00 2.73
4645 5032 1.237285 AATCCTTGTGGTGTGCGCTC 61.237 55.000 9.73 5.51 34.23 5.03
4702 5089 2.333417 GCTCTCCTCGGTGTCGTCA 61.333 63.158 0.00 0.00 37.69 4.35
5058 5451 4.352893 TCTCTCTCTCTCTCTCACTCTCA 58.647 47.826 0.00 0.00 0.00 3.27
5064 5457 3.386078 GCTCTCTCTCTCTCTCTCTCTCA 59.614 52.174 0.00 0.00 0.00 3.27
5089 5496 4.966005 GGTTCGCCCTGAAAAAGC 57.034 55.556 0.00 0.00 38.60 3.51
5173 5580 5.061920 ACTAGTCAGTTCGGTTTCATCTC 57.938 43.478 0.00 0.00 0.00 2.75
5216 5623 3.868661 ACAGCAAAACGGGAATTTTGTTC 59.131 39.130 11.43 0.00 46.68 3.18
5217 5624 3.620821 CACAGCAAAACGGGAATTTTGTT 59.379 39.130 11.43 4.16 46.68 2.83
5218 5625 3.194062 CACAGCAAAACGGGAATTTTGT 58.806 40.909 11.43 0.00 46.68 2.83
5220 5627 3.194062 CACACAGCAAAACGGGAATTTT 58.806 40.909 0.00 0.00 31.87 1.82
5247 5672 1.163554 CTGGCAGAGAAAGTGAAGGC 58.836 55.000 9.42 0.00 0.00 4.35
5332 5758 4.025360 TCCCATCACAATTCAATTCAGGG 58.975 43.478 0.00 0.00 0.00 4.45
5343 5769 0.033796 CAGGCAGGTCCCATCACAAT 60.034 55.000 0.00 0.00 34.51 2.71
5359 5785 4.901849 TCTACCAAGGAGGATGATTACAGG 59.098 45.833 0.00 0.00 41.22 4.00
5360 5786 6.295575 GGATCTACCAAGGAGGATGATTACAG 60.296 46.154 0.00 0.00 41.22 2.74
5361 5787 5.544176 GGATCTACCAAGGAGGATGATTACA 59.456 44.000 0.00 0.00 41.22 2.41
5362 5788 5.782845 AGGATCTACCAAGGAGGATGATTAC 59.217 44.000 0.00 0.00 41.22 1.89
5363 5789 5.982391 AGGATCTACCAAGGAGGATGATTA 58.018 41.667 0.00 0.00 41.22 1.75
5364 5790 4.837218 AGGATCTACCAAGGAGGATGATT 58.163 43.478 0.00 0.00 41.22 2.57
5365 5791 4.140591 TGAGGATCTACCAAGGAGGATGAT 60.141 45.833 0.00 0.00 42.04 2.45
5366 5792 3.207549 TGAGGATCTACCAAGGAGGATGA 59.792 47.826 0.00 0.00 42.04 2.92
5367 5793 3.581101 TGAGGATCTACCAAGGAGGATG 58.419 50.000 0.00 0.00 42.04 3.51
5371 5797 5.365021 AACATTGAGGATCTACCAAGGAG 57.635 43.478 11.58 3.84 42.04 3.69
5443 5869 2.548920 AGCTCAAAGCAGTAGCGAAAGT 60.549 45.455 1.29 0.00 45.56 2.66
5449 5879 1.736681 CTGGAAGCTCAAAGCAGTAGC 59.263 52.381 1.29 0.00 45.56 3.58
5487 5921 7.340232 TCAATCCAAATTTCCAGACCTATGAAG 59.660 37.037 0.00 0.00 0.00 3.02
5492 5926 6.789268 TCTTCAATCCAAATTTCCAGACCTA 58.211 36.000 0.00 0.00 0.00 3.08
5500 5934 5.245977 TGTCCCCTTCTTCAATCCAAATTTC 59.754 40.000 0.00 0.00 0.00 2.17
5536 5970 5.299279 TCACATGTCCACTTCCTTTCTTTTC 59.701 40.000 0.00 0.00 0.00 2.29
5568 6024 8.900781 CCAACTCAATTAGTACTAGCTAGTGTA 58.099 37.037 32.21 21.22 37.50 2.90
5672 6131 0.534873 GACAGGGAGAGGCTTCACTC 59.465 60.000 0.00 0.00 37.77 3.51
5710 6202 1.065199 GGGATCAGTTGCCTGTCATGA 60.065 52.381 0.00 0.00 39.82 3.07
5720 6212 1.004628 TGTGGTGGATGGGATCAGTTG 59.995 52.381 0.00 0.00 0.00 3.16
5744 6236 8.006298 TGTCACACTCAACCAAAAAGAAATAT 57.994 30.769 0.00 0.00 0.00 1.28
5758 6256 1.123077 AGCTCACCTGTCACACTCAA 58.877 50.000 0.00 0.00 0.00 3.02
5950 6466 4.214332 CCATCTGAATCTGATGAGCATGTG 59.786 45.833 25.29 8.26 40.60 3.21
5983 6562 7.489574 TGTTTTTCTGTTTTGTTTTCAGCTT 57.510 28.000 0.00 0.00 0.00 3.74
6033 6613 2.755103 GCCAAAGGTAAATGCTGTAGCT 59.245 45.455 5.38 0.00 42.66 3.32
6034 6614 2.491693 TGCCAAAGGTAAATGCTGTAGC 59.508 45.455 0.00 0.00 42.50 3.58
6035 6615 4.458989 TCTTGCCAAAGGTAAATGCTGTAG 59.541 41.667 0.00 0.00 33.90 2.74
6036 6616 4.402829 TCTTGCCAAAGGTAAATGCTGTA 58.597 39.130 0.00 0.00 33.90 2.74
6037 6617 3.230134 TCTTGCCAAAGGTAAATGCTGT 58.770 40.909 0.00 0.00 33.90 4.40
6038 6618 3.940209 TCTTGCCAAAGGTAAATGCTG 57.060 42.857 0.00 0.00 33.90 4.41
6039 6619 5.488262 AAATCTTGCCAAAGGTAAATGCT 57.512 34.783 0.00 0.00 33.90 3.79
6040 6620 6.558771 AAAAATCTTGCCAAAGGTAAATGC 57.441 33.333 0.00 0.00 33.90 3.56
6070 6651 4.718858 TGACGGTAGACAAAATGTTTCG 57.281 40.909 0.00 0.00 0.00 3.46
6097 6679 9.267084 GGTAGGAATTTTGCAAGATTTTTACAA 57.733 29.630 23.54 7.85 0.00 2.41
6116 6724 6.536447 AGAACGGTTAGATTTTTGGTAGGAA 58.464 36.000 0.00 0.00 0.00 3.36
6184 6793 6.038603 TGAATTGGTAGAGTGCATTGCTATTC 59.961 38.462 10.49 5.03 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.