Multiple sequence alignment - TraesCS5B01G025400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G025400 chr5B 100.000 3243 0 0 1 3243 24145258 24142016 0.000000e+00 5989
1 TraesCS5B01G025400 chr5B 84.735 452 35 12 4 429 24110499 24110942 3.870000e-114 422
2 TraesCS5B01G025400 chr5B 83.333 420 38 17 2 420 24807847 24808235 3.080000e-95 359
3 TraesCS5B01G025400 chr4B 96.537 1646 57 0 1551 3196 657804455 657802810 0.000000e+00 2724
4 TraesCS5B01G025400 chr4A 95.578 1651 66 5 1551 3196 521946224 521947872 0.000000e+00 2638
5 TraesCS5B01G025400 chr7D 95.590 1542 65 3 1551 3089 92233518 92231977 0.000000e+00 2468
6 TraesCS5B01G025400 chr7D 95.528 1543 59 7 1551 3089 631817564 631816028 0.000000e+00 2459
7 TraesCS5B01G025400 chr7D 94.600 963 35 11 609 1561 540442133 540443088 0.000000e+00 1474
8 TraesCS5B01G025400 chr7D 93.615 971 43 16 599 1561 526288215 526289174 0.000000e+00 1432
9 TraesCS5B01G025400 chr3D 95.460 1542 67 3 1551 3089 45062206 45060665 0.000000e+00 2457
10 TraesCS5B01G025400 chr3D 94.767 1586 50 6 1637 3196 20289735 20291313 0.000000e+00 2438
11 TraesCS5B01G025400 chr3D 94.704 1586 51 6 1637 3196 523401527 523403105 0.000000e+00 2433
12 TraesCS5B01G025400 chr3D 93.895 1425 50 8 1798 3196 160918205 160919618 0.000000e+00 2115
13 TraesCS5B01G025400 chr3D 94.682 959 41 7 609 1561 20288618 20289572 0.000000e+00 1480
14 TraesCS5B01G025400 chr3D 94.676 958 42 6 609 1561 523400411 523401364 0.000000e+00 1478
15 TraesCS5B01G025400 chr3D 94.583 960 41 8 609 1561 160913034 160913989 0.000000e+00 1474
16 TraesCS5B01G025400 chr3D 93.750 960 43 14 609 1561 532071287 532070338 0.000000e+00 1424
17 TraesCS5B01G025400 chr1D 95.408 1546 64 5 1551 3089 414450224 414448679 0.000000e+00 2455
18 TraesCS5B01G025400 chr1D 94.704 1586 57 3 1637 3196 30072798 30071214 0.000000e+00 2438
19 TraesCS5B01G025400 chr1D 94.792 1536 72 5 1551 3084 444899341 444900870 0.000000e+00 2386
20 TraesCS5B01G025400 chr5D 95.399 1543 62 7 1551 3089 408554310 408552773 0.000000e+00 2447
21 TraesCS5B01G025400 chr5D 92.964 1677 73 13 1551 3196 494244445 494242783 0.000000e+00 2401
22 TraesCS5B01G025400 chr5D 87.611 452 40 11 1 440 33046573 33046126 8.030000e-141 510
23 TraesCS5B01G025400 chr5D 85.307 456 38 16 1 429 33052961 33052508 8.260000e-121 444
24 TraesCS5B01G025400 chr5D 85.430 453 37 15 1 426 37042846 37043296 8.260000e-121 444
25 TraesCS5B01G025400 chr5D 90.879 307 26 2 1 305 37049243 37049549 8.370000e-111 411
26 TraesCS5B01G025400 chr5D 83.721 430 37 11 2 429 33655806 33655408 3.050000e-100 375
27 TraesCS5B01G025400 chr5D 89.583 240 20 4 371 609 33031211 33030976 1.890000e-77 300
28 TraesCS5B01G025400 chr5D 90.000 190 12 3 1 183 33686873 33686684 4.180000e-59 239
29 TraesCS5B01G025400 chr5D 89.418 189 14 1 1 183 33661073 33660885 1.950000e-57 233
30 TraesCS5B01G025400 chr2D 94.990 1537 70 6 1551 3084 624288145 624289677 0.000000e+00 2405
31 TraesCS5B01G025400 chr2D 92.017 1616 75 24 1637 3243 7524597 7523027 0.000000e+00 2220
32 TraesCS5B01G025400 chr2D 94.538 952 37 9 609 1551 513034140 513033195 0.000000e+00 1456
33 TraesCS5B01G025400 chr6D 94.885 958 36 8 609 1561 175423683 175424632 0.000000e+00 1485
34 TraesCS5B01G025400 chr4D 93.548 961 44 15 609 1561 391455571 391456521 0.000000e+00 1415
35 TraesCS5B01G025400 chr5A 94.294 666 25 2 2532 3196 647553084 647553737 0.000000e+00 1007
36 TraesCS5B01G025400 chr5A 90.229 481 35 6 1 477 21438471 21437999 4.600000e-173 617
37 TraesCS5B01G025400 chr5A 85.621 459 36 8 1 429 22057227 22056769 3.810000e-124 455


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G025400 chr5B 24142016 24145258 3242 True 5989.0 5989 100.0000 1 3243 1 chr5B.!!$R1 3242
1 TraesCS5B01G025400 chr4B 657802810 657804455 1645 True 2724.0 2724 96.5370 1551 3196 1 chr4B.!!$R1 1645
2 TraesCS5B01G025400 chr4A 521946224 521947872 1648 False 2638.0 2638 95.5780 1551 3196 1 chr4A.!!$F1 1645
3 TraesCS5B01G025400 chr7D 92231977 92233518 1541 True 2468.0 2468 95.5900 1551 3089 1 chr7D.!!$R1 1538
4 TraesCS5B01G025400 chr7D 631816028 631817564 1536 True 2459.0 2459 95.5280 1551 3089 1 chr7D.!!$R2 1538
5 TraesCS5B01G025400 chr7D 540442133 540443088 955 False 1474.0 1474 94.6000 609 1561 1 chr7D.!!$F2 952
6 TraesCS5B01G025400 chr7D 526288215 526289174 959 False 1432.0 1432 93.6150 599 1561 1 chr7D.!!$F1 962
7 TraesCS5B01G025400 chr3D 45060665 45062206 1541 True 2457.0 2457 95.4600 1551 3089 1 chr3D.!!$R1 1538
8 TraesCS5B01G025400 chr3D 160918205 160919618 1413 False 2115.0 2115 93.8950 1798 3196 1 chr3D.!!$F2 1398
9 TraesCS5B01G025400 chr3D 20288618 20291313 2695 False 1959.0 2438 94.7245 609 3196 2 chr3D.!!$F3 2587
10 TraesCS5B01G025400 chr3D 523400411 523403105 2694 False 1955.5 2433 94.6900 609 3196 2 chr3D.!!$F4 2587
11 TraesCS5B01G025400 chr3D 160913034 160913989 955 False 1474.0 1474 94.5830 609 1561 1 chr3D.!!$F1 952
12 TraesCS5B01G025400 chr3D 532070338 532071287 949 True 1424.0 1424 93.7500 609 1561 1 chr3D.!!$R2 952
13 TraesCS5B01G025400 chr1D 414448679 414450224 1545 True 2455.0 2455 95.4080 1551 3089 1 chr1D.!!$R2 1538
14 TraesCS5B01G025400 chr1D 30071214 30072798 1584 True 2438.0 2438 94.7040 1637 3196 1 chr1D.!!$R1 1559
15 TraesCS5B01G025400 chr1D 444899341 444900870 1529 False 2386.0 2386 94.7920 1551 3084 1 chr1D.!!$F1 1533
16 TraesCS5B01G025400 chr5D 408552773 408554310 1537 True 2447.0 2447 95.3990 1551 3089 1 chr5D.!!$R7 1538
17 TraesCS5B01G025400 chr5D 494242783 494244445 1662 True 2401.0 2401 92.9640 1551 3196 1 chr5D.!!$R8 1645
18 TraesCS5B01G025400 chr2D 624288145 624289677 1532 False 2405.0 2405 94.9900 1551 3084 1 chr2D.!!$F1 1533
19 TraesCS5B01G025400 chr2D 7523027 7524597 1570 True 2220.0 2220 92.0170 1637 3243 1 chr2D.!!$R1 1606
20 TraesCS5B01G025400 chr2D 513033195 513034140 945 True 1456.0 1456 94.5380 609 1551 1 chr2D.!!$R2 942
21 TraesCS5B01G025400 chr6D 175423683 175424632 949 False 1485.0 1485 94.8850 609 1561 1 chr6D.!!$F1 952
22 TraesCS5B01G025400 chr4D 391455571 391456521 950 False 1415.0 1415 93.5480 609 1561 1 chr4D.!!$F1 952
23 TraesCS5B01G025400 chr5A 647553084 647553737 653 False 1007.0 1007 94.2940 2532 3196 1 chr5A.!!$F1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.033405 ATGCTTGAGCTTGCCTCCAT 60.033 50.0 4.44 0.0 39.98 3.41 F
570 571 0.038599 ACATGGCTGGCTCATCAACA 59.961 50.0 2.00 0.0 0.00 3.33 F
607 608 0.179086 TGTCTGCATGTGACACACGT 60.179 50.0 11.22 0.0 39.23 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 1915 0.482446 TTGTCCTGCACCCTTCCAAT 59.518 50.000 0.00 0.00 0.00 3.16 R
1938 2090 1.880027 CTTGTTTCTGGTACACCTGCC 59.120 52.381 0.00 0.00 36.82 4.85 R
2297 2449 2.353958 CAGTCATGCCAGGCCACT 59.646 61.111 9.64 5.42 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.453572 AAGAAGATATGTGATTGCTGTAAAGAA 57.546 29.630 0.00 0.00 0.00 2.52
27 28 9.107177 AGAAGATATGTGATTGCTGTAAAGAAG 57.893 33.333 0.00 0.00 0.00 2.85
28 29 7.798596 AGATATGTGATTGCTGTAAAGAAGG 57.201 36.000 0.00 0.00 0.00 3.46
29 30 7.568349 AGATATGTGATTGCTGTAAAGAAGGA 58.432 34.615 0.00 0.00 0.00 3.36
30 31 8.216423 AGATATGTGATTGCTGTAAAGAAGGAT 58.784 33.333 0.00 0.00 0.00 3.24
31 32 9.494271 GATATGTGATTGCTGTAAAGAAGGATA 57.506 33.333 0.00 0.00 0.00 2.59
32 33 6.985188 TGTGATTGCTGTAAAGAAGGATAC 57.015 37.500 0.00 0.00 0.00 2.24
49 50 5.841957 GGATACTTGGATGCATTTGAAGT 57.158 39.130 17.77 17.77 0.00 3.01
50 51 6.212888 GGATACTTGGATGCATTTGAAGTT 57.787 37.500 18.49 10.31 0.00 2.66
51 52 6.268566 GGATACTTGGATGCATTTGAAGTTC 58.731 40.000 18.49 15.40 0.00 3.01
52 53 6.127647 GGATACTTGGATGCATTTGAAGTTCA 60.128 38.462 18.49 0.08 0.00 3.18
53 54 5.534207 ACTTGGATGCATTTGAAGTTCAA 57.466 34.783 14.35 14.35 34.03 2.69
54 55 5.535333 ACTTGGATGCATTTGAAGTTCAAG 58.465 37.500 17.36 9.10 37.70 3.02
55 56 4.524316 TGGATGCATTTGAAGTTCAAGG 57.476 40.909 17.36 14.64 37.70 3.61
56 57 3.896888 TGGATGCATTTGAAGTTCAAGGT 59.103 39.130 17.36 8.73 37.70 3.50
57 58 5.076182 TGGATGCATTTGAAGTTCAAGGTA 58.924 37.500 17.36 13.66 37.70 3.08
58 59 5.183713 TGGATGCATTTGAAGTTCAAGGTAG 59.816 40.000 17.36 10.31 37.70 3.18
59 60 5.393461 GGATGCATTTGAAGTTCAAGGTAGG 60.393 44.000 17.36 7.16 37.70 3.18
60 61 4.469657 TGCATTTGAAGTTCAAGGTAGGT 58.530 39.130 17.36 0.39 37.70 3.08
61 62 4.518970 TGCATTTGAAGTTCAAGGTAGGTC 59.481 41.667 17.36 5.96 37.70 3.85
62 63 4.518970 GCATTTGAAGTTCAAGGTAGGTCA 59.481 41.667 17.36 1.93 37.70 4.02
63 64 5.335191 GCATTTGAAGTTCAAGGTAGGTCAG 60.335 44.000 17.36 3.97 37.70 3.51
64 65 5.623956 TTTGAAGTTCAAGGTAGGTCAGA 57.376 39.130 17.36 0.00 37.70 3.27
65 66 4.873746 TGAAGTTCAAGGTAGGTCAGAG 57.126 45.455 2.20 0.00 0.00 3.35
66 67 4.480115 TGAAGTTCAAGGTAGGTCAGAGA 58.520 43.478 2.20 0.00 0.00 3.10
67 68 4.899457 TGAAGTTCAAGGTAGGTCAGAGAA 59.101 41.667 2.20 0.00 0.00 2.87
68 69 5.011125 TGAAGTTCAAGGTAGGTCAGAGAAG 59.989 44.000 2.20 0.00 0.00 2.85
69 70 4.484912 AGTTCAAGGTAGGTCAGAGAAGT 58.515 43.478 0.00 0.00 0.00 3.01
70 71 5.642165 AGTTCAAGGTAGGTCAGAGAAGTA 58.358 41.667 0.00 0.00 0.00 2.24
71 72 5.712917 AGTTCAAGGTAGGTCAGAGAAGTAG 59.287 44.000 0.00 0.00 0.00 2.57
72 73 5.258216 TCAAGGTAGGTCAGAGAAGTAGT 57.742 43.478 0.00 0.00 0.00 2.73
73 74 6.384342 TCAAGGTAGGTCAGAGAAGTAGTA 57.616 41.667 0.00 0.00 0.00 1.82
74 75 6.787170 TCAAGGTAGGTCAGAGAAGTAGTAA 58.213 40.000 0.00 0.00 0.00 2.24
75 76 7.236529 TCAAGGTAGGTCAGAGAAGTAGTAAA 58.763 38.462 0.00 0.00 0.00 2.01
76 77 7.727186 TCAAGGTAGGTCAGAGAAGTAGTAAAA 59.273 37.037 0.00 0.00 0.00 1.52
77 78 8.365647 CAAGGTAGGTCAGAGAAGTAGTAAAAA 58.634 37.037 0.00 0.00 0.00 1.94
78 79 8.667592 AGGTAGGTCAGAGAAGTAGTAAAAAT 57.332 34.615 0.00 0.00 0.00 1.82
79 80 8.532819 AGGTAGGTCAGAGAAGTAGTAAAAATG 58.467 37.037 0.00 0.00 0.00 2.32
80 81 8.529476 GGTAGGTCAGAGAAGTAGTAAAAATGA 58.471 37.037 0.00 0.00 0.00 2.57
83 84 9.041354 AGGTCAGAGAAGTAGTAAAAATGATCT 57.959 33.333 0.00 0.00 0.00 2.75
84 85 9.660180 GGTCAGAGAAGTAGTAAAAATGATCTT 57.340 33.333 0.00 0.00 0.00 2.40
92 93 9.739276 AAGTAGTAAAAATGATCTTGATCACCA 57.261 29.630 14.58 0.00 32.79 4.17
93 94 9.911788 AGTAGTAAAAATGATCTTGATCACCAT 57.088 29.630 14.58 3.21 32.79 3.55
96 97 9.028284 AGTAAAAATGATCTTGATCACCATTGT 57.972 29.630 14.58 8.72 32.79 2.71
97 98 9.643693 GTAAAAATGATCTTGATCACCATTGTT 57.356 29.630 14.58 9.71 32.79 2.83
98 99 8.767478 AAAAATGATCTTGATCACCATTGTTC 57.233 30.769 14.58 0.00 32.79 3.18
99 100 6.461110 AATGATCTTGATCACCATTGTTCC 57.539 37.500 14.58 0.00 32.79 3.62
100 101 5.183530 TGATCTTGATCACCATTGTTCCT 57.816 39.130 9.02 0.00 0.00 3.36
101 102 5.573219 TGATCTTGATCACCATTGTTCCTT 58.427 37.500 9.02 0.00 0.00 3.36
102 103 5.649395 TGATCTTGATCACCATTGTTCCTTC 59.351 40.000 9.02 0.00 0.00 3.46
103 104 4.984295 TCTTGATCACCATTGTTCCTTCA 58.016 39.130 0.00 0.00 0.00 3.02
104 105 5.384336 TCTTGATCACCATTGTTCCTTCAA 58.616 37.500 0.00 0.00 0.00 2.69
105 106 5.832595 TCTTGATCACCATTGTTCCTTCAAA 59.167 36.000 0.00 0.00 0.00 2.69
106 107 5.710513 TGATCACCATTGTTCCTTCAAAG 57.289 39.130 0.00 0.00 0.00 2.77
107 108 4.022068 TGATCACCATTGTTCCTTCAAAGC 60.022 41.667 0.00 0.00 0.00 3.51
108 109 3.295093 TCACCATTGTTCCTTCAAAGCA 58.705 40.909 0.00 0.00 0.00 3.91
109 110 3.703556 TCACCATTGTTCCTTCAAAGCAA 59.296 39.130 0.00 0.00 0.00 3.91
110 111 4.161189 TCACCATTGTTCCTTCAAAGCAAA 59.839 37.500 0.00 0.00 0.00 3.68
111 112 4.874966 CACCATTGTTCCTTCAAAGCAAAA 59.125 37.500 0.00 0.00 0.00 2.44
112 113 5.353678 CACCATTGTTCCTTCAAAGCAAAAA 59.646 36.000 0.00 0.00 0.00 1.94
133 134 5.897377 AAAACATGGGTACAACTATCAGC 57.103 39.130 0.00 0.00 0.00 4.26
134 135 4.568072 AACATGGGTACAACTATCAGCA 57.432 40.909 0.00 0.00 0.00 4.41
135 136 4.568072 ACATGGGTACAACTATCAGCAA 57.432 40.909 0.00 0.00 0.00 3.91
136 137 4.917385 ACATGGGTACAACTATCAGCAAA 58.083 39.130 0.00 0.00 0.00 3.68
137 138 5.509498 ACATGGGTACAACTATCAGCAAAT 58.491 37.500 0.00 0.00 0.00 2.32
138 139 5.590259 ACATGGGTACAACTATCAGCAAATC 59.410 40.000 0.00 0.00 0.00 2.17
139 140 5.172687 TGGGTACAACTATCAGCAAATCA 57.827 39.130 0.00 0.00 0.00 2.57
140 141 5.754782 TGGGTACAACTATCAGCAAATCAT 58.245 37.500 0.00 0.00 0.00 2.45
141 142 5.589855 TGGGTACAACTATCAGCAAATCATG 59.410 40.000 0.00 0.00 0.00 3.07
153 154 2.268298 CAAATCATGCTTGAGCTTGCC 58.732 47.619 12.51 0.00 43.38 4.52
154 155 1.848652 AATCATGCTTGAGCTTGCCT 58.151 45.000 12.51 2.28 43.38 4.75
155 156 1.390565 ATCATGCTTGAGCTTGCCTC 58.609 50.000 12.51 0.00 43.38 4.70
156 157 0.679002 TCATGCTTGAGCTTGCCTCC 60.679 55.000 12.51 0.00 43.38 4.30
157 158 0.963856 CATGCTTGAGCTTGCCTCCA 60.964 55.000 4.44 0.00 39.98 3.86
158 159 0.033405 ATGCTTGAGCTTGCCTCCAT 60.033 50.000 4.44 0.00 39.98 3.41
159 160 0.679002 TGCTTGAGCTTGCCTCCATC 60.679 55.000 4.44 0.00 39.98 3.51
160 161 0.394080 GCTTGAGCTTGCCTCCATCT 60.394 55.000 0.00 0.00 39.98 2.90
161 162 1.666054 CTTGAGCTTGCCTCCATCTC 58.334 55.000 0.00 0.00 39.98 2.75
162 163 0.986527 TTGAGCTTGCCTCCATCTCA 59.013 50.000 0.00 0.00 39.98 3.27
163 164 0.540454 TGAGCTTGCCTCCATCTCAG 59.460 55.000 0.00 0.00 39.98 3.35
164 165 0.540923 GAGCTTGCCTCCATCTCAGT 59.459 55.000 0.00 0.00 34.35 3.41
165 166 0.252479 AGCTTGCCTCCATCTCAGTG 59.748 55.000 0.00 0.00 0.00 3.66
166 167 0.251354 GCTTGCCTCCATCTCAGTGA 59.749 55.000 0.00 0.00 0.00 3.41
167 168 1.339438 GCTTGCCTCCATCTCAGTGAA 60.339 52.381 0.00 0.00 0.00 3.18
168 169 2.630158 CTTGCCTCCATCTCAGTGAAG 58.370 52.381 0.00 0.00 0.00 3.02
169 170 0.907486 TGCCTCCATCTCAGTGAAGG 59.093 55.000 3.75 3.75 35.01 3.46
170 171 0.908198 GCCTCCATCTCAGTGAAGGT 59.092 55.000 9.12 0.00 35.23 3.50
171 172 1.280421 GCCTCCATCTCAGTGAAGGTT 59.720 52.381 9.12 0.00 35.23 3.50
172 173 2.501723 GCCTCCATCTCAGTGAAGGTTA 59.498 50.000 9.12 0.00 35.23 2.85
173 174 3.680196 GCCTCCATCTCAGTGAAGGTTAC 60.680 52.174 9.12 0.00 35.23 2.50
174 175 3.772025 CCTCCATCTCAGTGAAGGTTACT 59.228 47.826 0.00 0.00 35.23 2.24
175 176 4.223923 CCTCCATCTCAGTGAAGGTTACTT 59.776 45.833 0.00 0.00 40.34 2.24
176 177 5.152623 TCCATCTCAGTGAAGGTTACTTG 57.847 43.478 0.00 0.00 36.97 3.16
177 178 4.020218 TCCATCTCAGTGAAGGTTACTTGG 60.020 45.833 0.00 0.00 36.97 3.61
178 179 4.263068 CCATCTCAGTGAAGGTTACTTGGT 60.263 45.833 0.00 0.00 36.97 3.67
179 180 4.602340 TCTCAGTGAAGGTTACTTGGTC 57.398 45.455 0.00 0.00 36.97 4.02
180 181 3.005472 TCTCAGTGAAGGTTACTTGGTCG 59.995 47.826 0.00 0.00 36.97 4.79
181 182 2.960384 TCAGTGAAGGTTACTTGGTCGA 59.040 45.455 0.00 0.00 36.97 4.20
182 183 3.385433 TCAGTGAAGGTTACTTGGTCGAA 59.615 43.478 0.00 0.00 36.97 3.71
183 184 3.493503 CAGTGAAGGTTACTTGGTCGAAC 59.506 47.826 0.00 0.00 36.97 3.95
184 185 3.387050 AGTGAAGGTTACTTGGTCGAACT 59.613 43.478 0.33 0.00 36.97 3.01
185 186 4.124970 GTGAAGGTTACTTGGTCGAACTT 58.875 43.478 0.33 0.00 36.97 2.66
186 187 4.025145 GTGAAGGTTACTTGGTCGAACTTG 60.025 45.833 0.33 0.00 36.97 3.16
187 188 2.490991 AGGTTACTTGGTCGAACTTGC 58.509 47.619 0.33 0.00 0.00 4.01
188 189 2.158871 AGGTTACTTGGTCGAACTTGCA 60.159 45.455 0.33 0.00 0.00 4.08
189 190 2.614983 GGTTACTTGGTCGAACTTGCAA 59.385 45.455 0.33 0.00 0.00 4.08
190 191 3.065648 GGTTACTTGGTCGAACTTGCAAA 59.934 43.478 0.33 0.00 0.00 3.68
191 192 8.329637 AAGGTTACTTGGTCGAACTTGCAAAG 62.330 42.308 0.33 0.00 42.42 2.77
204 205 6.715347 AACTTGCAAAGGTAATTCACTCTT 57.285 33.333 0.00 0.00 46.27 2.85
205 206 7.112452 AACTTGCAAAGGTAATTCACTCTTT 57.888 32.000 0.00 0.00 46.27 2.52
206 207 7.203218 AACTTGCAAAGGTAATTCACTCTTTC 58.797 34.615 0.00 0.00 46.27 2.62
207 208 6.707440 TTGCAAAGGTAATTCACTCTTTCA 57.293 33.333 0.00 0.00 30.09 2.69
208 209 6.899393 TGCAAAGGTAATTCACTCTTTCAT 57.101 33.333 0.00 0.00 30.09 2.57
209 210 7.994425 TGCAAAGGTAATTCACTCTTTCATA 57.006 32.000 0.00 0.00 30.09 2.15
210 211 8.579850 TGCAAAGGTAATTCACTCTTTCATAT 57.420 30.769 0.00 0.00 30.09 1.78
211 212 9.023962 TGCAAAGGTAATTCACTCTTTCATATT 57.976 29.630 0.00 0.00 30.09 1.28
212 213 9.508567 GCAAAGGTAATTCACTCTTTCATATTC 57.491 33.333 0.00 0.00 30.09 1.75
213 214 9.708222 CAAAGGTAATTCACTCTTTCATATTCG 57.292 33.333 0.00 0.00 30.09 3.34
214 215 9.667107 AAAGGTAATTCACTCTTTCATATTCGA 57.333 29.630 0.00 0.00 0.00 3.71
215 216 9.667107 AAGGTAATTCACTCTTTCATATTCGAA 57.333 29.630 0.00 0.00 0.00 3.71
216 217 9.099454 AGGTAATTCACTCTTTCATATTCGAAC 57.901 33.333 0.00 0.00 0.00 3.95
217 218 9.099454 GGTAATTCACTCTTTCATATTCGAACT 57.901 33.333 0.00 0.00 0.00 3.01
220 221 6.968131 TCACTCTTTCATATTCGAACTTGG 57.032 37.500 0.00 0.00 0.00 3.61
221 222 5.874810 TCACTCTTTCATATTCGAACTTGGG 59.125 40.000 0.00 0.00 0.00 4.12
222 223 5.643777 CACTCTTTCATATTCGAACTTGGGT 59.356 40.000 0.00 0.00 0.00 4.51
223 224 6.149474 CACTCTTTCATATTCGAACTTGGGTT 59.851 38.462 0.00 0.00 38.52 4.11
224 225 6.149474 ACTCTTTCATATTCGAACTTGGGTTG 59.851 38.462 0.00 0.00 35.58 3.77
225 226 6.234920 TCTTTCATATTCGAACTTGGGTTGA 58.765 36.000 0.00 0.00 35.58 3.18
226 227 6.371548 TCTTTCATATTCGAACTTGGGTTGAG 59.628 38.462 0.00 0.00 35.58 3.02
227 228 5.160607 TCATATTCGAACTTGGGTTGAGT 57.839 39.130 0.00 0.00 35.58 3.41
228 229 5.556915 TCATATTCGAACTTGGGTTGAGTT 58.443 37.500 0.00 0.00 39.90 3.01
229 230 6.703319 TCATATTCGAACTTGGGTTGAGTTA 58.297 36.000 0.00 0.00 37.46 2.24
230 231 6.592607 TCATATTCGAACTTGGGTTGAGTTAC 59.407 38.462 0.00 0.00 37.46 2.50
231 232 4.411256 TTCGAACTTGGGTTGAGTTACT 57.589 40.909 0.00 0.00 37.46 2.24
232 233 5.534207 TTCGAACTTGGGTTGAGTTACTA 57.466 39.130 0.00 0.00 37.46 1.82
233 234 5.130292 TCGAACTTGGGTTGAGTTACTAG 57.870 43.478 0.00 0.00 37.46 2.57
234 235 4.586001 TCGAACTTGGGTTGAGTTACTAGT 59.414 41.667 0.00 0.00 37.46 2.57
235 236 5.069516 TCGAACTTGGGTTGAGTTACTAGTT 59.930 40.000 0.00 0.00 37.46 2.24
236 237 5.176958 CGAACTTGGGTTGAGTTACTAGTTG 59.823 44.000 0.00 0.00 37.46 3.16
237 238 5.881923 ACTTGGGTTGAGTTACTAGTTGA 57.118 39.130 0.00 0.00 0.00 3.18
238 239 6.243216 ACTTGGGTTGAGTTACTAGTTGAA 57.757 37.500 0.00 0.00 0.00 2.69
239 240 6.838382 ACTTGGGTTGAGTTACTAGTTGAAT 58.162 36.000 0.00 0.00 0.00 2.57
240 241 6.710744 ACTTGGGTTGAGTTACTAGTTGAATG 59.289 38.462 0.00 0.00 0.00 2.67
241 242 6.182507 TGGGTTGAGTTACTAGTTGAATGT 57.817 37.500 0.00 0.00 0.00 2.71
242 243 7.305813 TGGGTTGAGTTACTAGTTGAATGTA 57.694 36.000 0.00 0.00 0.00 2.29
243 244 7.156673 TGGGTTGAGTTACTAGTTGAATGTAC 58.843 38.462 0.00 0.00 0.00 2.90
244 245 6.309737 GGGTTGAGTTACTAGTTGAATGTACG 59.690 42.308 0.00 0.00 0.00 3.67
245 246 6.865205 GGTTGAGTTACTAGTTGAATGTACGT 59.135 38.462 0.00 0.00 0.00 3.57
246 247 7.383300 GGTTGAGTTACTAGTTGAATGTACGTT 59.617 37.037 0.00 0.00 0.00 3.99
247 248 8.758715 GTTGAGTTACTAGTTGAATGTACGTTT 58.241 33.333 0.00 0.00 0.00 3.60
248 249 8.289440 TGAGTTACTAGTTGAATGTACGTTTG 57.711 34.615 0.00 0.00 0.00 2.93
249 250 7.922278 TGAGTTACTAGTTGAATGTACGTTTGT 59.078 33.333 0.00 0.00 0.00 2.83
250 251 8.652810 AGTTACTAGTTGAATGTACGTTTGTT 57.347 30.769 0.00 0.00 0.00 2.83
251 252 8.545420 AGTTACTAGTTGAATGTACGTTTGTTG 58.455 33.333 0.00 0.00 0.00 3.33
252 253 5.744490 ACTAGTTGAATGTACGTTTGTTGC 58.256 37.500 0.98 0.00 0.00 4.17
253 254 3.959943 AGTTGAATGTACGTTTGTTGCC 58.040 40.909 0.98 0.00 0.00 4.52
254 255 3.378742 AGTTGAATGTACGTTTGTTGCCA 59.621 39.130 0.98 0.00 0.00 4.92
255 256 3.341857 TGAATGTACGTTTGTTGCCAC 57.658 42.857 0.98 0.00 0.00 5.01
256 257 2.683362 TGAATGTACGTTTGTTGCCACA 59.317 40.909 0.98 0.00 0.00 4.17
257 258 3.242903 TGAATGTACGTTTGTTGCCACAG 60.243 43.478 0.98 0.00 33.22 3.66
258 259 2.025589 TGTACGTTTGTTGCCACAGA 57.974 45.000 0.00 0.00 33.22 3.41
259 260 2.357075 TGTACGTTTGTTGCCACAGAA 58.643 42.857 0.00 0.00 33.22 3.02
260 261 2.747989 TGTACGTTTGTTGCCACAGAAA 59.252 40.909 0.00 0.00 33.22 2.52
261 262 3.190744 TGTACGTTTGTTGCCACAGAAAA 59.809 39.130 0.00 0.00 33.22 2.29
262 263 3.305398 ACGTTTGTTGCCACAGAAAAA 57.695 38.095 0.00 0.00 33.22 1.94
323 324 7.945033 ATTGTACTGCCTTTGTAAACAAATG 57.055 32.000 8.62 7.47 43.92 2.32
324 325 6.458232 TGTACTGCCTTTGTAAACAAATGT 57.542 33.333 8.62 8.21 43.92 2.71
325 326 7.569639 TGTACTGCCTTTGTAAACAAATGTA 57.430 32.000 8.62 5.35 43.92 2.29
326 327 7.997482 TGTACTGCCTTTGTAAACAAATGTAA 58.003 30.769 8.62 0.24 43.92 2.41
327 328 8.467598 TGTACTGCCTTTGTAAACAAATGTAAA 58.532 29.630 8.62 3.87 43.92 2.01
328 329 8.964150 GTACTGCCTTTGTAAACAAATGTAAAG 58.036 33.333 8.62 8.12 43.92 1.85
329 330 7.777095 ACTGCCTTTGTAAACAAATGTAAAGA 58.223 30.769 8.62 0.00 43.92 2.52
330 331 7.704899 ACTGCCTTTGTAAACAAATGTAAAGAC 59.295 33.333 8.62 0.00 43.92 3.01
331 332 6.693545 TGCCTTTGTAAACAAATGTAAAGACG 59.306 34.615 8.62 0.00 43.92 4.18
332 333 6.693978 GCCTTTGTAAACAAATGTAAAGACGT 59.306 34.615 8.62 0.00 43.92 4.34
333 334 7.096763 GCCTTTGTAAACAAATGTAAAGACGTC 60.097 37.037 7.70 7.70 43.92 4.34
334 335 8.126700 CCTTTGTAAACAAATGTAAAGACGTCT 58.873 33.333 13.58 13.58 43.92 4.18
335 336 9.498307 CTTTGTAAACAAATGTAAAGACGTCTT 57.502 29.630 24.93 24.93 43.92 3.01
349 350 9.891535 GTAAAGACGTCTTATATTTGTTTACCG 57.108 33.333 29.91 0.00 34.61 4.02
350 351 8.761575 AAAGACGTCTTATATTTGTTTACCGA 57.238 30.769 29.91 0.00 34.61 4.69
351 352 7.982371 AGACGTCTTATATTTGTTTACCGAG 57.018 36.000 13.58 0.00 0.00 4.63
352 353 6.976925 AGACGTCTTATATTTGTTTACCGAGG 59.023 38.462 13.58 0.00 0.00 4.63
353 354 6.044682 ACGTCTTATATTTGTTTACCGAGGG 58.955 40.000 0.00 0.00 0.00 4.30
354 355 6.127366 ACGTCTTATATTTGTTTACCGAGGGA 60.127 38.462 0.00 0.00 0.00 4.20
355 356 6.420008 CGTCTTATATTTGTTTACCGAGGGAG 59.580 42.308 0.00 0.00 0.00 4.30
356 357 7.270779 GTCTTATATTTGTTTACCGAGGGAGT 58.729 38.462 0.00 0.00 0.00 3.85
357 358 8.416329 GTCTTATATTTGTTTACCGAGGGAGTA 58.584 37.037 0.00 0.00 0.00 2.59
358 359 9.151177 TCTTATATTTGTTTACCGAGGGAGTAT 57.849 33.333 0.00 0.00 0.00 2.12
359 360 9.774413 CTTATATTTGTTTACCGAGGGAGTATT 57.226 33.333 0.00 0.00 0.00 1.89
362 363 7.770366 ATTTGTTTACCGAGGGAGTATTTTT 57.230 32.000 0.00 0.00 0.00 1.94
390 391 5.960113 CAGCTCTATTAGAGTTGTGTGAGT 58.040 41.667 22.54 0.00 45.05 3.41
391 392 6.393990 CAGCTCTATTAGAGTTGTGTGAGTT 58.606 40.000 22.54 0.00 45.05 3.01
392 393 6.529829 CAGCTCTATTAGAGTTGTGTGAGTTC 59.470 42.308 22.54 4.58 45.05 3.01
393 394 6.209589 AGCTCTATTAGAGTTGTGTGAGTTCA 59.790 38.462 19.40 0.00 44.12 3.18
394 395 6.529829 GCTCTATTAGAGTTGTGTGAGTTCAG 59.470 42.308 19.40 0.00 44.12 3.02
395 396 7.575909 GCTCTATTAGAGTTGTGTGAGTTCAGA 60.576 40.741 19.40 0.00 44.12 3.27
396 397 8.354711 TCTATTAGAGTTGTGTGAGTTCAGAT 57.645 34.615 0.00 0.00 0.00 2.90
397 398 8.807118 TCTATTAGAGTTGTGTGAGTTCAGATT 58.193 33.333 0.00 0.00 0.00 2.40
398 399 9.429359 CTATTAGAGTTGTGTGAGTTCAGATTT 57.571 33.333 0.00 0.00 0.00 2.17
399 400 5.998454 AGAGTTGTGTGAGTTCAGATTTG 57.002 39.130 0.00 0.00 0.00 2.32
400 401 5.431765 AGAGTTGTGTGAGTTCAGATTTGT 58.568 37.500 0.00 0.00 0.00 2.83
401 402 6.582636 AGAGTTGTGTGAGTTCAGATTTGTA 58.417 36.000 0.00 0.00 0.00 2.41
402 403 6.480320 AGAGTTGTGTGAGTTCAGATTTGTAC 59.520 38.462 0.00 0.00 0.00 2.90
403 404 5.527582 AGTTGTGTGAGTTCAGATTTGTACC 59.472 40.000 0.00 0.00 0.00 3.34
404 405 5.029807 TGTGTGAGTTCAGATTTGTACCA 57.970 39.130 0.00 0.00 0.00 3.25
405 406 5.620206 TGTGTGAGTTCAGATTTGTACCAT 58.380 37.500 0.00 0.00 0.00 3.55
406 407 6.061441 TGTGTGAGTTCAGATTTGTACCATT 58.939 36.000 0.00 0.00 0.00 3.16
407 408 6.545666 TGTGTGAGTTCAGATTTGTACCATTT 59.454 34.615 0.00 0.00 0.00 2.32
408 409 7.068103 TGTGTGAGTTCAGATTTGTACCATTTT 59.932 33.333 0.00 0.00 0.00 1.82
409 410 8.564574 GTGTGAGTTCAGATTTGTACCATTTTA 58.435 33.333 0.00 0.00 0.00 1.52
410 411 9.295825 TGTGAGTTCAGATTTGTACCATTTTAT 57.704 29.630 0.00 0.00 0.00 1.40
455 456 9.661187 GTATATATTTGTATGACTATCGGACGG 57.339 37.037 0.00 0.00 0.00 4.79
456 457 6.829229 ATATTTGTATGACTATCGGACGGA 57.171 37.500 0.00 0.00 0.00 4.69
457 458 3.976793 TTGTATGACTATCGGACGGAC 57.023 47.619 0.00 0.00 0.00 4.79
458 459 1.869132 TGTATGACTATCGGACGGACG 59.131 52.381 0.00 0.00 0.00 4.79
460 461 0.942962 ATGACTATCGGACGGACGAC 59.057 55.000 5.85 0.00 46.64 4.34
461 462 1.275066 GACTATCGGACGGACGACG 59.725 63.158 5.85 3.01 46.64 5.12
470 471 3.796443 CGGACGACGGCGAGAAGA 61.796 66.667 22.49 0.00 41.64 2.87
471 472 2.100603 GGACGACGGCGAGAAGAG 59.899 66.667 22.49 0.00 41.64 2.85
472 473 2.577378 GACGACGGCGAGAAGAGC 60.577 66.667 22.49 0.00 41.64 4.09
473 474 3.324099 GACGACGGCGAGAAGAGCA 62.324 63.158 22.49 0.00 41.64 4.26
474 475 2.578178 CGACGGCGAGAAGAGCAG 60.578 66.667 16.62 0.00 40.82 4.24
475 476 2.202676 GACGGCGAGAAGAGCAGG 60.203 66.667 16.62 0.00 36.08 4.85
476 477 2.992114 ACGGCGAGAAGAGCAGGT 60.992 61.111 16.62 0.00 36.08 4.00
477 478 1.654954 GACGGCGAGAAGAGCAGGTA 61.655 60.000 16.62 0.00 36.08 3.08
478 479 1.064946 CGGCGAGAAGAGCAGGTAG 59.935 63.158 0.00 0.00 36.08 3.18
479 480 1.377366 CGGCGAGAAGAGCAGGTAGA 61.377 60.000 0.00 0.00 36.08 2.59
480 481 0.383949 GGCGAGAAGAGCAGGTAGAG 59.616 60.000 0.00 0.00 36.08 2.43
481 482 0.383949 GCGAGAAGAGCAGGTAGAGG 59.616 60.000 0.00 0.00 34.19 3.69
482 483 1.757682 CGAGAAGAGCAGGTAGAGGT 58.242 55.000 0.00 0.00 0.00 3.85
483 484 2.920524 CGAGAAGAGCAGGTAGAGGTA 58.079 52.381 0.00 0.00 0.00 3.08
484 485 2.875933 CGAGAAGAGCAGGTAGAGGTAG 59.124 54.545 0.00 0.00 0.00 3.18
485 486 3.432467 CGAGAAGAGCAGGTAGAGGTAGA 60.432 52.174 0.00 0.00 0.00 2.59
486 487 4.528920 GAGAAGAGCAGGTAGAGGTAGAA 58.471 47.826 0.00 0.00 0.00 2.10
487 488 4.936802 AGAAGAGCAGGTAGAGGTAGAAA 58.063 43.478 0.00 0.00 0.00 2.52
488 489 5.524535 AGAAGAGCAGGTAGAGGTAGAAAT 58.475 41.667 0.00 0.00 0.00 2.17
489 490 5.362430 AGAAGAGCAGGTAGAGGTAGAAATG 59.638 44.000 0.00 0.00 0.00 2.32
490 491 3.386402 AGAGCAGGTAGAGGTAGAAATGC 59.614 47.826 0.00 0.00 0.00 3.56
491 492 2.436173 AGCAGGTAGAGGTAGAAATGCC 59.564 50.000 0.00 0.00 32.95 4.40
492 493 2.803492 GCAGGTAGAGGTAGAAATGCCG 60.803 54.545 0.00 0.00 0.00 5.69
493 494 2.693591 CAGGTAGAGGTAGAAATGCCGA 59.306 50.000 0.00 0.00 0.00 5.54
494 495 3.322254 CAGGTAGAGGTAGAAATGCCGAT 59.678 47.826 0.00 0.00 0.00 4.18
495 496 3.322254 AGGTAGAGGTAGAAATGCCGATG 59.678 47.826 0.00 0.00 0.00 3.84
496 497 2.918712 AGAGGTAGAAATGCCGATGG 57.081 50.000 0.00 0.00 0.00 3.51
497 498 2.119495 AGAGGTAGAAATGCCGATGGT 58.881 47.619 0.00 0.00 0.00 3.55
498 499 2.158900 AGAGGTAGAAATGCCGATGGTG 60.159 50.000 0.00 0.00 0.00 4.17
499 500 1.559682 AGGTAGAAATGCCGATGGTGT 59.440 47.619 0.00 0.00 0.00 4.16
500 501 1.670811 GGTAGAAATGCCGATGGTGTG 59.329 52.381 0.00 0.00 0.00 3.82
501 502 2.356135 GTAGAAATGCCGATGGTGTGT 58.644 47.619 0.00 0.00 0.00 3.72
502 503 1.167851 AGAAATGCCGATGGTGTGTG 58.832 50.000 0.00 0.00 0.00 3.82
503 504 1.164411 GAAATGCCGATGGTGTGTGA 58.836 50.000 0.00 0.00 0.00 3.58
504 505 1.539388 GAAATGCCGATGGTGTGTGAA 59.461 47.619 0.00 0.00 0.00 3.18
505 506 1.167851 AATGCCGATGGTGTGTGAAG 58.832 50.000 0.00 0.00 0.00 3.02
506 507 0.324614 ATGCCGATGGTGTGTGAAGA 59.675 50.000 0.00 0.00 0.00 2.87
507 508 0.107643 TGCCGATGGTGTGTGAAGAA 59.892 50.000 0.00 0.00 0.00 2.52
508 509 1.271325 TGCCGATGGTGTGTGAAGAAT 60.271 47.619 0.00 0.00 0.00 2.40
509 510 2.027653 TGCCGATGGTGTGTGAAGAATA 60.028 45.455 0.00 0.00 0.00 1.75
510 511 3.206150 GCCGATGGTGTGTGAAGAATAT 58.794 45.455 0.00 0.00 0.00 1.28
511 512 4.141824 TGCCGATGGTGTGTGAAGAATATA 60.142 41.667 0.00 0.00 0.00 0.86
512 513 4.997395 GCCGATGGTGTGTGAAGAATATAT 59.003 41.667 0.00 0.00 0.00 0.86
513 514 5.120830 GCCGATGGTGTGTGAAGAATATATC 59.879 44.000 0.00 0.00 0.00 1.63
514 515 6.459066 CCGATGGTGTGTGAAGAATATATCT 58.541 40.000 0.00 0.00 41.32 1.98
515 516 6.367149 CCGATGGTGTGTGAAGAATATATCTG 59.633 42.308 0.00 0.00 38.79 2.90
516 517 6.128715 CGATGGTGTGTGAAGAATATATCTGC 60.129 42.308 0.00 0.00 38.79 4.26
517 518 5.988287 TGGTGTGTGAAGAATATATCTGCA 58.012 37.500 0.00 0.00 41.76 4.41
532 533 3.935872 GCACGTGCACAAGTCGCA 61.936 61.111 34.52 0.00 41.59 5.10
537 538 3.639008 TGCACAAGTCGCACGCTG 61.639 61.111 0.00 0.00 33.55 5.18
538 539 3.640000 GCACAAGTCGCACGCTGT 61.640 61.111 0.00 0.00 0.00 4.40
539 540 2.307309 GCACAAGTCGCACGCTGTA 61.307 57.895 0.00 0.00 0.00 2.74
540 541 1.626654 GCACAAGTCGCACGCTGTAT 61.627 55.000 0.00 0.00 0.00 2.29
541 542 0.790207 CACAAGTCGCACGCTGTATT 59.210 50.000 0.00 0.00 0.00 1.89
542 543 0.790207 ACAAGTCGCACGCTGTATTG 59.210 50.000 0.00 0.00 0.00 1.90
543 544 1.067693 CAAGTCGCACGCTGTATTGA 58.932 50.000 0.00 0.00 0.00 2.57
544 545 1.459209 CAAGTCGCACGCTGTATTGAA 59.541 47.619 0.00 0.00 0.00 2.69
545 546 1.350193 AGTCGCACGCTGTATTGAAG 58.650 50.000 0.00 0.00 0.00 3.02
546 547 0.247301 GTCGCACGCTGTATTGAAGC 60.247 55.000 0.00 0.00 37.31 3.86
553 554 2.010145 GCTGTATTGAAGCGGAGACA 57.990 50.000 0.00 0.00 0.00 3.41
554 555 2.555199 GCTGTATTGAAGCGGAGACAT 58.445 47.619 0.00 0.00 0.00 3.06
555 556 2.286294 GCTGTATTGAAGCGGAGACATG 59.714 50.000 0.00 0.00 0.00 3.21
556 557 2.868583 CTGTATTGAAGCGGAGACATGG 59.131 50.000 0.00 0.00 0.00 3.66
557 558 1.599542 GTATTGAAGCGGAGACATGGC 59.400 52.381 0.00 0.00 0.00 4.40
558 559 0.254178 ATTGAAGCGGAGACATGGCT 59.746 50.000 0.00 0.00 39.01 4.75
559 560 0.674581 TTGAAGCGGAGACATGGCTG 60.675 55.000 5.31 0.00 37.06 4.85
560 561 1.817099 GAAGCGGAGACATGGCTGG 60.817 63.158 5.31 0.00 37.06 4.85
561 562 3.984193 AAGCGGAGACATGGCTGGC 62.984 63.158 5.31 9.84 37.06 4.85
562 563 4.479993 GCGGAGACATGGCTGGCT 62.480 66.667 5.31 0.00 46.20 4.75
567 568 2.304069 AGACATGGCTGGCTCATCA 58.696 52.632 0.00 0.00 34.92 3.07
568 569 0.622136 AGACATGGCTGGCTCATCAA 59.378 50.000 0.00 0.00 34.92 2.57
569 570 0.737219 GACATGGCTGGCTCATCAAC 59.263 55.000 2.00 0.00 0.00 3.18
570 571 0.038599 ACATGGCTGGCTCATCAACA 59.961 50.000 2.00 0.00 0.00 3.33
571 572 0.738975 CATGGCTGGCTCATCAACAG 59.261 55.000 2.00 0.00 35.40 3.16
572 573 0.330604 ATGGCTGGCTCATCAACAGT 59.669 50.000 2.00 0.00 34.79 3.55
573 574 0.321919 TGGCTGGCTCATCAACAGTC 60.322 55.000 2.00 0.00 37.36 3.51
574 575 1.364626 GGCTGGCTCATCAACAGTCG 61.365 60.000 0.00 0.00 34.79 4.18
575 576 1.364626 GCTGGCTCATCAACAGTCGG 61.365 60.000 0.00 0.00 34.79 4.79
576 577 1.364626 CTGGCTCATCAACAGTCGGC 61.365 60.000 0.00 0.00 0.00 5.54
577 578 2.109126 GGCTCATCAACAGTCGGCC 61.109 63.158 0.00 0.00 0.00 6.13
578 579 2.456119 GCTCATCAACAGTCGGCCG 61.456 63.158 22.12 22.12 0.00 6.13
579 580 1.811266 CTCATCAACAGTCGGCCGG 60.811 63.158 27.83 12.37 0.00 6.13
580 581 2.225791 CTCATCAACAGTCGGCCGGA 62.226 60.000 27.83 14.11 0.00 5.14
581 582 1.811266 CATCAACAGTCGGCCGGAG 60.811 63.158 27.83 17.70 0.00 4.63
582 583 1.982395 ATCAACAGTCGGCCGGAGA 60.982 57.895 27.83 14.28 0.00 3.71
583 584 1.949847 ATCAACAGTCGGCCGGAGAG 61.950 60.000 27.83 15.41 0.00 3.20
584 585 4.070552 AACAGTCGGCCGGAGAGC 62.071 66.667 27.83 10.70 0.00 4.09
586 587 4.069232 CAGTCGGCCGGAGAGCAA 62.069 66.667 27.83 0.00 0.00 3.91
587 588 3.077556 AGTCGGCCGGAGAGCAAT 61.078 61.111 27.83 0.00 0.00 3.56
588 589 2.125106 GTCGGCCGGAGAGCAATT 60.125 61.111 27.83 0.00 0.00 2.32
589 590 2.125147 TCGGCCGGAGAGCAATTG 60.125 61.111 27.83 0.00 0.00 2.32
590 591 2.436646 CGGCCGGAGAGCAATTGT 60.437 61.111 20.10 0.00 0.00 2.71
591 592 2.464459 CGGCCGGAGAGCAATTGTC 61.464 63.158 20.10 3.80 0.00 3.18
592 593 1.078143 GGCCGGAGAGCAATTGTCT 60.078 57.895 5.05 8.60 0.00 3.41
593 594 1.372087 GGCCGGAGAGCAATTGTCTG 61.372 60.000 5.05 1.97 0.00 3.51
594 595 1.986575 GCCGGAGAGCAATTGTCTGC 61.987 60.000 5.05 12.17 42.97 4.26
595 596 0.674581 CCGGAGAGCAATTGTCTGCA 60.675 55.000 20.66 0.00 45.18 4.41
596 597 1.376543 CGGAGAGCAATTGTCTGCAT 58.623 50.000 20.66 5.17 45.18 3.96
597 598 1.063616 CGGAGAGCAATTGTCTGCATG 59.936 52.381 20.66 8.84 45.18 4.06
598 599 2.089980 GGAGAGCAATTGTCTGCATGT 58.910 47.619 17.98 0.00 45.18 3.21
599 600 2.159421 GGAGAGCAATTGTCTGCATGTG 60.159 50.000 17.98 0.00 45.18 3.21
600 601 2.745821 GAGAGCAATTGTCTGCATGTGA 59.254 45.455 7.40 0.00 45.18 3.58
601 602 2.486982 AGAGCAATTGTCTGCATGTGAC 59.513 45.455 7.40 12.11 45.18 3.67
602 603 2.227149 GAGCAATTGTCTGCATGTGACA 59.773 45.455 16.05 16.05 45.18 3.58
603 604 2.030540 AGCAATTGTCTGCATGTGACAC 60.031 45.455 18.55 0.00 45.18 3.67
604 605 2.287728 GCAATTGTCTGCATGTGACACA 60.288 45.455 11.41 11.41 43.13 3.72
605 606 3.302555 CAATTGTCTGCATGTGACACAC 58.697 45.455 11.22 0.00 43.13 3.82
606 607 0.936600 TTGTCTGCATGTGACACACG 59.063 50.000 11.22 3.28 43.13 4.49
607 608 0.179086 TGTCTGCATGTGACACACGT 60.179 50.000 11.22 0.00 39.23 4.49
696 699 1.002251 TCAAAAAGCTACCAAACGCGG 60.002 47.619 12.47 0.00 0.00 6.46
760 763 6.551736 CGATTTAACCATTTTTCTGACGGAT 58.448 36.000 0.00 0.00 0.00 4.18
907 920 1.211449 CACTCTCTCGTGCTCGCTT 59.789 57.895 2.69 0.00 36.96 4.68
927 940 1.958902 GCTCACTCCCCTGCTCTCAG 61.959 65.000 0.00 0.00 40.02 3.35
932 945 2.040278 CCCCTGCTCTCAGTCCCT 59.960 66.667 0.00 0.00 38.66 4.20
998 1039 4.675029 CGTCGACCCCTTTGCCGT 62.675 66.667 10.58 0.00 0.00 5.68
1116 1157 3.184628 GGTTAGGGTTAGGGTTAGGTGT 58.815 50.000 0.00 0.00 0.00 4.16
1225 1266 5.339695 GGGGTTTGATTGTAGGATTGAGGTA 60.340 44.000 0.00 0.00 0.00 3.08
1226 1267 6.184789 GGGTTTGATTGTAGGATTGAGGTAA 58.815 40.000 0.00 0.00 0.00 2.85
1274 1315 1.856629 AGGGTTCATGCTGATTTGGG 58.143 50.000 0.00 0.00 0.00 4.12
1327 1372 3.873952 GGTTCATCTCTGGTATTGAGTGC 59.126 47.826 0.00 0.00 33.59 4.40
1338 1383 5.316167 TGGTATTGAGTGCAGATTGAAACT 58.684 37.500 0.00 0.00 0.00 2.66
1414 1459 2.435372 TTTCTGTGGCCAACTTGAGT 57.565 45.000 7.24 0.00 0.00 3.41
1484 1529 2.888212 TGCTTTTGAAGGGCCTGTAAT 58.112 42.857 6.92 0.00 0.00 1.89
1526 1571 0.911769 CCAGTCCAGGTTAGATGCCA 59.088 55.000 0.00 0.00 0.00 4.92
1529 1574 3.209410 CAGTCCAGGTTAGATGCCAATC 58.791 50.000 0.00 0.00 0.00 2.67
1540 1585 4.184079 AGATGCCAATCAAGTTTTCTGC 57.816 40.909 0.00 0.00 35.03 4.26
1553 1704 6.149973 TCAAGTTTTCTGCTATGGATGTTCAG 59.850 38.462 0.00 0.00 0.00 3.02
1774 1926 1.815003 GAGCAGAACATTGGAAGGGTG 59.185 52.381 0.00 0.00 0.00 4.61
1938 2090 0.833287 CAGGATGGTAGGGTGGACAG 59.167 60.000 0.00 0.00 0.00 3.51
1961 2113 2.290641 CAGGTGTACCAGAAACAAGTGC 59.709 50.000 3.56 0.00 38.89 4.40
2152 2304 6.941857 AGATGTTCTTAAGAAGGAGAAGGAC 58.058 40.000 18.22 4.82 34.27 3.85
2188 2340 1.811359 GTTGCTGAGCTGCTGAAAGAT 59.189 47.619 7.01 0.00 34.07 2.40
2191 2343 0.733729 CTGAGCTGCTGAAAGATGGC 59.266 55.000 7.01 0.00 34.07 4.40
2232 2384 0.749049 GAGCAAATCAAGGCCATCCC 59.251 55.000 5.01 0.00 0.00 3.85
2297 2449 7.591821 ACATCCAAAGGCCTTTATATAAGGAA 58.408 34.615 29.94 15.08 39.81 3.36
2464 2617 6.929049 TGCTATTAAGTAGTGGAAATGGATCG 59.071 38.462 0.00 0.00 32.72 3.69
2474 2627 4.515191 GTGGAAATGGATCGCTTATGCTAA 59.485 41.667 0.00 0.00 36.97 3.09
2501 2654 6.248433 AGTTGTGGAAATGGATCTTGTATGT 58.752 36.000 0.00 0.00 0.00 2.29
2503 2656 6.513806 TGTGGAAATGGATCTTGTATGTTG 57.486 37.500 0.00 0.00 0.00 3.33
2661 2816 5.877012 CCATCCATCTCTCAATATAAACCCG 59.123 44.000 0.00 0.00 0.00 5.28
2663 2818 7.310423 CCATCCATCTCTCAATATAAACCCGTA 60.310 40.741 0.00 0.00 0.00 4.02
2731 2887 5.157770 AGAAACCCTACAGATGGATCCTA 57.842 43.478 14.23 0.00 0.00 2.94
2809 2974 2.730524 GCACAGAGGAGGAGGAGGC 61.731 68.421 0.00 0.00 0.00 4.70
2851 3016 3.790437 CGGCCCAGGATGAGCAGT 61.790 66.667 0.00 0.00 39.69 4.40
2867 3032 2.972713 AGCAGTAAGAGGAGTTCAACCA 59.027 45.455 0.00 0.00 0.00 3.67
2917 3082 6.047511 AGTGCAATGATGAAGAACTAGAGT 57.952 37.500 0.00 0.00 0.00 3.24
2935 3100 2.840066 TTGGTTTTCACTGGCGGCG 61.840 57.895 0.51 0.51 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.453572 TTCTTTACAGCAATCACATATCTTCTT 57.546 29.630 0.00 0.00 0.00 2.52
5 6 7.792374 TCCTTCTTTACAGCAATCACATATC 57.208 36.000 0.00 0.00 0.00 1.63
7 8 8.486210 AGTATCCTTCTTTACAGCAATCACATA 58.514 33.333 0.00 0.00 0.00 2.29
8 9 7.341805 AGTATCCTTCTTTACAGCAATCACAT 58.658 34.615 0.00 0.00 0.00 3.21
9 10 6.711277 AGTATCCTTCTTTACAGCAATCACA 58.289 36.000 0.00 0.00 0.00 3.58
10 11 7.414540 CCAAGTATCCTTCTTTACAGCAATCAC 60.415 40.741 0.00 0.00 0.00 3.06
11 12 6.599244 CCAAGTATCCTTCTTTACAGCAATCA 59.401 38.462 0.00 0.00 0.00 2.57
12 13 6.823689 TCCAAGTATCCTTCTTTACAGCAATC 59.176 38.462 0.00 0.00 0.00 2.67
13 14 6.721318 TCCAAGTATCCTTCTTTACAGCAAT 58.279 36.000 0.00 0.00 0.00 3.56
14 15 6.121776 TCCAAGTATCCTTCTTTACAGCAA 57.878 37.500 0.00 0.00 0.00 3.91
15 16 5.755409 TCCAAGTATCCTTCTTTACAGCA 57.245 39.130 0.00 0.00 0.00 4.41
16 17 5.008118 GCATCCAAGTATCCTTCTTTACAGC 59.992 44.000 0.00 0.00 0.00 4.40
17 18 6.115446 TGCATCCAAGTATCCTTCTTTACAG 58.885 40.000 0.00 0.00 0.00 2.74
18 19 6.061022 TGCATCCAAGTATCCTTCTTTACA 57.939 37.500 0.00 0.00 0.00 2.41
19 20 7.573968 AATGCATCCAAGTATCCTTCTTTAC 57.426 36.000 0.00 0.00 0.00 2.01
20 21 7.833682 TCAAATGCATCCAAGTATCCTTCTTTA 59.166 33.333 0.00 0.00 0.00 1.85
21 22 6.664816 TCAAATGCATCCAAGTATCCTTCTTT 59.335 34.615 0.00 0.00 0.00 2.52
22 23 6.189859 TCAAATGCATCCAAGTATCCTTCTT 58.810 36.000 0.00 0.00 0.00 2.52
23 24 5.759059 TCAAATGCATCCAAGTATCCTTCT 58.241 37.500 0.00 0.00 0.00 2.85
24 25 6.096001 ACTTCAAATGCATCCAAGTATCCTTC 59.904 38.462 13.51 0.00 0.00 3.46
25 26 5.954150 ACTTCAAATGCATCCAAGTATCCTT 59.046 36.000 13.51 0.00 0.00 3.36
26 27 5.513233 ACTTCAAATGCATCCAAGTATCCT 58.487 37.500 13.51 0.00 0.00 3.24
27 28 5.841957 ACTTCAAATGCATCCAAGTATCC 57.158 39.130 13.51 0.00 0.00 2.59
28 29 6.855836 TGAACTTCAAATGCATCCAAGTATC 58.144 36.000 14.84 14.03 0.00 2.24
29 30 6.839124 TGAACTTCAAATGCATCCAAGTAT 57.161 33.333 14.84 8.17 0.00 2.12
30 31 6.294675 CCTTGAACTTCAAATGCATCCAAGTA 60.295 38.462 14.84 2.56 35.73 2.24
31 32 5.510179 CCTTGAACTTCAAATGCATCCAAGT 60.510 40.000 0.00 5.87 35.73 3.16
32 33 4.927425 CCTTGAACTTCAAATGCATCCAAG 59.073 41.667 0.00 5.20 35.73 3.61
33 34 4.344679 ACCTTGAACTTCAAATGCATCCAA 59.655 37.500 0.00 0.00 35.73 3.53
34 35 3.896888 ACCTTGAACTTCAAATGCATCCA 59.103 39.130 0.00 0.00 35.73 3.41
35 36 4.525912 ACCTTGAACTTCAAATGCATCC 57.474 40.909 0.00 0.00 35.73 3.51
36 37 5.183904 ACCTACCTTGAACTTCAAATGCATC 59.816 40.000 0.00 0.00 35.73 3.91
37 38 5.079643 ACCTACCTTGAACTTCAAATGCAT 58.920 37.500 5.72 0.00 35.73 3.96
38 39 4.469657 ACCTACCTTGAACTTCAAATGCA 58.530 39.130 5.72 0.00 35.73 3.96
39 40 4.518970 TGACCTACCTTGAACTTCAAATGC 59.481 41.667 5.72 0.00 35.73 3.56
40 41 5.997746 TCTGACCTACCTTGAACTTCAAATG 59.002 40.000 5.72 3.11 35.73 2.32
41 42 6.043243 TCTCTGACCTACCTTGAACTTCAAAT 59.957 38.462 5.72 0.45 35.73 2.32
42 43 5.365605 TCTCTGACCTACCTTGAACTTCAAA 59.634 40.000 5.72 0.00 35.73 2.69
43 44 4.899457 TCTCTGACCTACCTTGAACTTCAA 59.101 41.667 4.16 4.16 34.79 2.69
44 45 4.480115 TCTCTGACCTACCTTGAACTTCA 58.520 43.478 0.00 0.00 0.00 3.02
45 46 5.011227 ACTTCTCTGACCTACCTTGAACTTC 59.989 44.000 0.00 0.00 0.00 3.01
46 47 4.902448 ACTTCTCTGACCTACCTTGAACTT 59.098 41.667 0.00 0.00 0.00 2.66
47 48 4.484912 ACTTCTCTGACCTACCTTGAACT 58.515 43.478 0.00 0.00 0.00 3.01
48 49 4.875561 ACTTCTCTGACCTACCTTGAAC 57.124 45.455 0.00 0.00 0.00 3.18
49 50 5.642165 ACTACTTCTCTGACCTACCTTGAA 58.358 41.667 0.00 0.00 0.00 2.69
50 51 5.258216 ACTACTTCTCTGACCTACCTTGA 57.742 43.478 0.00 0.00 0.00 3.02
51 52 7.463961 TTTACTACTTCTCTGACCTACCTTG 57.536 40.000 0.00 0.00 0.00 3.61
52 53 8.488308 TTTTTACTACTTCTCTGACCTACCTT 57.512 34.615 0.00 0.00 0.00 3.50
53 54 8.532819 CATTTTTACTACTTCTCTGACCTACCT 58.467 37.037 0.00 0.00 0.00 3.08
54 55 8.529476 TCATTTTTACTACTTCTCTGACCTACC 58.471 37.037 0.00 0.00 0.00 3.18
57 58 9.041354 AGATCATTTTTACTACTTCTCTGACCT 57.959 33.333 0.00 0.00 0.00 3.85
58 59 9.660180 AAGATCATTTTTACTACTTCTCTGACC 57.340 33.333 0.00 0.00 0.00 4.02
78 79 5.183530 AGGAACAATGGTGATCAAGATCA 57.816 39.130 8.61 8.61 44.83 2.92
79 80 5.649395 TGAAGGAACAATGGTGATCAAGATC 59.351 40.000 0.00 3.12 38.29 2.75
80 81 5.573219 TGAAGGAACAATGGTGATCAAGAT 58.427 37.500 0.00 0.00 0.00 2.40
81 82 4.984295 TGAAGGAACAATGGTGATCAAGA 58.016 39.130 0.00 0.00 0.00 3.02
82 83 5.710513 TTGAAGGAACAATGGTGATCAAG 57.289 39.130 0.00 0.00 0.00 3.02
83 84 5.509501 GCTTTGAAGGAACAATGGTGATCAA 60.510 40.000 0.00 0.00 0.00 2.57
84 85 4.022068 GCTTTGAAGGAACAATGGTGATCA 60.022 41.667 0.00 0.00 0.00 2.92
85 86 4.022068 TGCTTTGAAGGAACAATGGTGATC 60.022 41.667 0.00 0.00 0.00 2.92
86 87 3.896888 TGCTTTGAAGGAACAATGGTGAT 59.103 39.130 0.00 0.00 0.00 3.06
87 88 3.295093 TGCTTTGAAGGAACAATGGTGA 58.705 40.909 0.00 0.00 0.00 4.02
88 89 3.731652 TGCTTTGAAGGAACAATGGTG 57.268 42.857 0.00 0.00 0.00 4.17
89 90 4.751767 TTTGCTTTGAAGGAACAATGGT 57.248 36.364 0.00 0.00 36.03 3.55
110 111 5.772672 TGCTGATAGTTGTACCCATGTTTTT 59.227 36.000 0.00 0.00 0.00 1.94
111 112 5.321102 TGCTGATAGTTGTACCCATGTTTT 58.679 37.500 0.00 0.00 0.00 2.43
112 113 4.917385 TGCTGATAGTTGTACCCATGTTT 58.083 39.130 0.00 0.00 0.00 2.83
113 114 4.568072 TGCTGATAGTTGTACCCATGTT 57.432 40.909 0.00 0.00 0.00 2.71
114 115 4.568072 TTGCTGATAGTTGTACCCATGT 57.432 40.909 0.00 0.00 0.00 3.21
115 116 5.589855 TGATTTGCTGATAGTTGTACCCATG 59.410 40.000 0.00 0.00 0.00 3.66
116 117 5.754782 TGATTTGCTGATAGTTGTACCCAT 58.245 37.500 0.00 0.00 0.00 4.00
117 118 5.172687 TGATTTGCTGATAGTTGTACCCA 57.827 39.130 0.00 0.00 0.00 4.51
118 119 6.064846 CATGATTTGCTGATAGTTGTACCC 57.935 41.667 0.00 0.00 0.00 3.69
133 134 2.094182 AGGCAAGCTCAAGCATGATTTG 60.094 45.455 11.13 10.32 41.77 2.32
134 135 2.165845 GAGGCAAGCTCAAGCATGATTT 59.834 45.455 11.13 0.00 41.77 2.17
135 136 1.749634 GAGGCAAGCTCAAGCATGATT 59.250 47.619 11.13 0.00 41.77 2.57
136 137 1.390565 GAGGCAAGCTCAAGCATGAT 58.609 50.000 11.13 0.00 41.77 2.45
137 138 0.679002 GGAGGCAAGCTCAAGCATGA 60.679 55.000 11.13 0.00 41.77 3.07
138 139 0.963856 TGGAGGCAAGCTCAAGCATG 60.964 55.000 4.59 3.73 45.16 4.06
139 140 0.033405 ATGGAGGCAAGCTCAAGCAT 60.033 50.000 4.59 0.74 45.16 3.79
140 141 0.679002 GATGGAGGCAAGCTCAAGCA 60.679 55.000 4.59 0.00 45.16 3.91
141 142 0.394080 AGATGGAGGCAAGCTCAAGC 60.394 55.000 0.00 0.00 42.49 4.01
142 143 1.065636 TGAGATGGAGGCAAGCTCAAG 60.066 52.381 1.09 0.00 33.11 3.02
143 144 0.986527 TGAGATGGAGGCAAGCTCAA 59.013 50.000 1.09 0.00 33.11 3.02
144 145 0.540454 CTGAGATGGAGGCAAGCTCA 59.460 55.000 0.00 0.00 34.71 4.26
145 146 0.540923 ACTGAGATGGAGGCAAGCTC 59.459 55.000 0.00 0.00 0.00 4.09
146 147 0.252479 CACTGAGATGGAGGCAAGCT 59.748 55.000 0.00 0.00 0.00 3.74
147 148 0.251354 TCACTGAGATGGAGGCAAGC 59.749 55.000 0.00 0.00 0.00 4.01
148 149 2.630158 CTTCACTGAGATGGAGGCAAG 58.370 52.381 0.00 0.00 0.00 4.01
149 150 1.280133 CCTTCACTGAGATGGAGGCAA 59.720 52.381 1.53 0.00 38.58 4.52
150 151 0.907486 CCTTCACTGAGATGGAGGCA 59.093 55.000 1.53 0.00 38.58 4.75
151 152 3.776616 CCTTCACTGAGATGGAGGC 57.223 57.895 1.53 0.00 38.58 4.70
153 154 5.174395 CAAGTAACCTTCACTGAGATGGAG 58.826 45.833 12.71 0.00 42.68 3.86
154 155 4.020218 CCAAGTAACCTTCACTGAGATGGA 60.020 45.833 12.71 0.00 42.68 3.41
155 156 4.256920 CCAAGTAACCTTCACTGAGATGG 58.743 47.826 5.65 5.65 44.91 3.51
156 157 4.899502 ACCAAGTAACCTTCACTGAGATG 58.100 43.478 0.00 0.00 0.00 2.90
157 158 4.322049 CGACCAAGTAACCTTCACTGAGAT 60.322 45.833 0.00 0.00 0.00 2.75
158 159 3.005472 CGACCAAGTAACCTTCACTGAGA 59.995 47.826 0.00 0.00 0.00 3.27
159 160 3.005472 TCGACCAAGTAACCTTCACTGAG 59.995 47.826 0.00 0.00 0.00 3.35
160 161 2.960384 TCGACCAAGTAACCTTCACTGA 59.040 45.455 0.00 0.00 0.00 3.41
161 162 3.380479 TCGACCAAGTAACCTTCACTG 57.620 47.619 0.00 0.00 0.00 3.66
162 163 3.387050 AGTTCGACCAAGTAACCTTCACT 59.613 43.478 0.00 0.00 0.00 3.41
163 164 3.725490 AGTTCGACCAAGTAACCTTCAC 58.275 45.455 0.00 0.00 0.00 3.18
164 165 4.124238 CAAGTTCGACCAAGTAACCTTCA 58.876 43.478 0.00 0.00 0.00 3.02
165 166 3.059120 GCAAGTTCGACCAAGTAACCTTC 60.059 47.826 0.00 0.00 0.00 3.46
166 167 2.876550 GCAAGTTCGACCAAGTAACCTT 59.123 45.455 0.00 0.00 0.00 3.50
167 168 2.158871 TGCAAGTTCGACCAAGTAACCT 60.159 45.455 0.00 0.00 0.00 3.50
168 169 2.215196 TGCAAGTTCGACCAAGTAACC 58.785 47.619 0.00 0.00 0.00 2.85
169 170 3.955771 TTGCAAGTTCGACCAAGTAAC 57.044 42.857 0.00 0.00 0.00 2.50
170 171 3.314080 CCTTTGCAAGTTCGACCAAGTAA 59.686 43.478 0.00 0.00 0.00 2.24
171 172 2.875933 CCTTTGCAAGTTCGACCAAGTA 59.124 45.455 0.00 0.00 0.00 2.24
172 173 1.676006 CCTTTGCAAGTTCGACCAAGT 59.324 47.619 0.00 0.00 0.00 3.16
173 174 1.676006 ACCTTTGCAAGTTCGACCAAG 59.324 47.619 0.00 0.00 0.00 3.61
174 175 1.757682 ACCTTTGCAAGTTCGACCAA 58.242 45.000 0.00 0.00 0.00 3.67
175 176 2.623878 TACCTTTGCAAGTTCGACCA 57.376 45.000 0.00 0.00 0.00 4.02
176 177 4.023536 TGAATTACCTTTGCAAGTTCGACC 60.024 41.667 0.00 0.00 0.00 4.79
177 178 4.909880 GTGAATTACCTTTGCAAGTTCGAC 59.090 41.667 0.00 0.00 0.00 4.20
178 179 4.819630 AGTGAATTACCTTTGCAAGTTCGA 59.180 37.500 0.00 0.00 0.00 3.71
179 180 5.049405 AGAGTGAATTACCTTTGCAAGTTCG 60.049 40.000 0.00 0.00 0.00 3.95
180 181 6.319141 AGAGTGAATTACCTTTGCAAGTTC 57.681 37.500 0.00 0.28 0.00 3.01
181 182 6.715347 AAGAGTGAATTACCTTTGCAAGTT 57.285 33.333 0.00 0.00 0.00 2.66
182 183 6.321181 TGAAAGAGTGAATTACCTTTGCAAGT 59.679 34.615 0.00 0.00 33.09 3.16
183 184 6.738114 TGAAAGAGTGAATTACCTTTGCAAG 58.262 36.000 0.00 0.00 33.09 4.01
184 185 6.707440 TGAAAGAGTGAATTACCTTTGCAA 57.293 33.333 0.00 0.00 33.09 4.08
185 186 6.899393 ATGAAAGAGTGAATTACCTTTGCA 57.101 33.333 0.00 0.00 33.09 4.08
186 187 9.508567 GAATATGAAAGAGTGAATTACCTTTGC 57.491 33.333 0.00 0.00 33.09 3.68
187 188 9.708222 CGAATATGAAAGAGTGAATTACCTTTG 57.292 33.333 0.00 0.00 33.09 2.77
188 189 9.667107 TCGAATATGAAAGAGTGAATTACCTTT 57.333 29.630 0.00 0.00 34.56 3.11
189 190 9.667107 TTCGAATATGAAAGAGTGAATTACCTT 57.333 29.630 0.00 0.00 0.00 3.50
190 191 9.099454 GTTCGAATATGAAAGAGTGAATTACCT 57.901 33.333 0.00 0.00 0.00 3.08
191 192 9.099454 AGTTCGAATATGAAAGAGTGAATTACC 57.901 33.333 0.00 0.00 0.00 2.85
194 195 8.454106 CCAAGTTCGAATATGAAAGAGTGAATT 58.546 33.333 0.00 0.00 0.00 2.17
195 196 7.066284 CCCAAGTTCGAATATGAAAGAGTGAAT 59.934 37.037 0.00 0.00 0.00 2.57
196 197 6.371548 CCCAAGTTCGAATATGAAAGAGTGAA 59.628 38.462 0.00 0.00 0.00 3.18
197 198 5.874810 CCCAAGTTCGAATATGAAAGAGTGA 59.125 40.000 0.00 0.00 0.00 3.41
198 199 5.643777 ACCCAAGTTCGAATATGAAAGAGTG 59.356 40.000 0.00 0.00 0.00 3.51
199 200 5.805728 ACCCAAGTTCGAATATGAAAGAGT 58.194 37.500 0.00 0.00 0.00 3.24
200 201 6.371548 TCAACCCAAGTTCGAATATGAAAGAG 59.628 38.462 0.00 0.00 32.45 2.85
201 202 6.234920 TCAACCCAAGTTCGAATATGAAAGA 58.765 36.000 0.00 0.00 32.45 2.52
202 203 6.149474 ACTCAACCCAAGTTCGAATATGAAAG 59.851 38.462 0.00 0.00 32.45 2.62
203 204 6.001460 ACTCAACCCAAGTTCGAATATGAAA 58.999 36.000 0.00 0.00 32.45 2.69
204 205 5.556915 ACTCAACCCAAGTTCGAATATGAA 58.443 37.500 0.00 0.00 32.45 2.57
205 206 5.160607 ACTCAACCCAAGTTCGAATATGA 57.839 39.130 0.00 0.00 32.45 2.15
206 207 5.880054 AACTCAACCCAAGTTCGAATATG 57.120 39.130 0.00 3.56 31.36 1.78
207 208 6.708285 AGTAACTCAACCCAAGTTCGAATAT 58.292 36.000 0.00 0.00 38.00 1.28
208 209 6.105397 AGTAACTCAACCCAAGTTCGAATA 57.895 37.500 0.00 0.00 38.00 1.75
209 210 4.969484 AGTAACTCAACCCAAGTTCGAAT 58.031 39.130 0.00 0.00 38.00 3.34
210 211 4.411256 AGTAACTCAACCCAAGTTCGAA 57.589 40.909 0.00 0.00 38.00 3.71
211 212 4.586001 ACTAGTAACTCAACCCAAGTTCGA 59.414 41.667 0.00 0.00 38.00 3.71
212 213 4.879598 ACTAGTAACTCAACCCAAGTTCG 58.120 43.478 0.00 0.00 38.00 3.95
213 214 6.285990 TCAACTAGTAACTCAACCCAAGTTC 58.714 40.000 0.00 0.00 38.00 3.01
214 215 6.243216 TCAACTAGTAACTCAACCCAAGTT 57.757 37.500 0.00 0.00 40.06 2.66
215 216 5.881923 TCAACTAGTAACTCAACCCAAGT 57.118 39.130 0.00 0.00 0.00 3.16
216 217 6.710744 ACATTCAACTAGTAACTCAACCCAAG 59.289 38.462 0.00 0.00 0.00 3.61
217 218 6.597562 ACATTCAACTAGTAACTCAACCCAA 58.402 36.000 0.00 0.00 0.00 4.12
218 219 6.182507 ACATTCAACTAGTAACTCAACCCA 57.817 37.500 0.00 0.00 0.00 4.51
219 220 6.309737 CGTACATTCAACTAGTAACTCAACCC 59.690 42.308 0.00 0.00 0.00 4.11
220 221 6.865205 ACGTACATTCAACTAGTAACTCAACC 59.135 38.462 0.00 0.00 0.00 3.77
221 222 7.864307 ACGTACATTCAACTAGTAACTCAAC 57.136 36.000 0.00 0.00 0.00 3.18
222 223 8.757789 CAAACGTACATTCAACTAGTAACTCAA 58.242 33.333 0.00 0.00 0.00 3.02
223 224 7.922278 ACAAACGTACATTCAACTAGTAACTCA 59.078 33.333 0.00 0.00 0.00 3.41
224 225 8.290663 ACAAACGTACATTCAACTAGTAACTC 57.709 34.615 0.00 0.00 0.00 3.01
225 226 8.545420 CAACAAACGTACATTCAACTAGTAACT 58.455 33.333 0.00 0.00 0.00 2.24
226 227 7.319615 GCAACAAACGTACATTCAACTAGTAAC 59.680 37.037 0.00 0.00 0.00 2.50
227 228 7.346695 GCAACAAACGTACATTCAACTAGTAA 58.653 34.615 0.00 0.00 0.00 2.24
228 229 6.073657 GGCAACAAACGTACATTCAACTAGTA 60.074 38.462 0.00 0.00 0.00 1.82
229 230 5.277634 GGCAACAAACGTACATTCAACTAGT 60.278 40.000 0.00 0.00 0.00 2.57
230 231 5.144359 GGCAACAAACGTACATTCAACTAG 58.856 41.667 0.00 0.00 0.00 2.57
231 232 5.098218 GGCAACAAACGTACATTCAACTA 57.902 39.130 0.00 0.00 0.00 2.24
232 233 3.959943 GGCAACAAACGTACATTCAACT 58.040 40.909 0.00 0.00 0.00 3.16
309 310 9.498307 AAGACGTCTTTACATTTGTTTACAAAG 57.502 29.630 24.93 8.16 39.94 2.77
323 324 9.891535 CGGTAAACAAATATAAGACGTCTTTAC 57.108 33.333 33.82 23.91 37.40 2.01
324 325 9.853555 TCGGTAAACAAATATAAGACGTCTTTA 57.146 29.630 33.82 23.86 37.40 1.85
325 326 8.761575 TCGGTAAACAAATATAAGACGTCTTT 57.238 30.769 33.82 22.67 37.40 2.52
326 327 7.490402 CCTCGGTAAACAAATATAAGACGTCTT 59.510 37.037 31.70 31.70 39.85 3.01
327 328 6.976925 CCTCGGTAAACAAATATAAGACGTCT 59.023 38.462 13.58 13.58 0.00 4.18
328 329 6.199719 CCCTCGGTAAACAAATATAAGACGTC 59.800 42.308 7.70 7.70 0.00 4.34
329 330 6.044682 CCCTCGGTAAACAAATATAAGACGT 58.955 40.000 0.00 0.00 0.00 4.34
330 331 6.275335 TCCCTCGGTAAACAAATATAAGACG 58.725 40.000 0.00 0.00 0.00 4.18
331 332 7.270779 ACTCCCTCGGTAAACAAATATAAGAC 58.729 38.462 0.00 0.00 0.00 3.01
332 333 7.427989 ACTCCCTCGGTAAACAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
333 334 9.774413 AATACTCCCTCGGTAAACAAATATAAG 57.226 33.333 0.00 0.00 0.00 1.73
336 337 9.470399 AAAAATACTCCCTCGGTAAACAAATAT 57.530 29.630 0.00 0.00 0.00 1.28
337 338 8.866970 AAAAATACTCCCTCGGTAAACAAATA 57.133 30.769 0.00 0.00 0.00 1.40
338 339 7.770366 AAAAATACTCCCTCGGTAAACAAAT 57.230 32.000 0.00 0.00 0.00 2.32
360 361 9.944376 ACACAACTCTAATAGAGCTGAATAAAA 57.056 29.630 22.98 0.00 46.12 1.52
361 362 9.371136 CACACAACTCTAATAGAGCTGAATAAA 57.629 33.333 22.98 0.00 46.12 1.40
362 363 8.749354 TCACACAACTCTAATAGAGCTGAATAA 58.251 33.333 22.98 6.97 46.12 1.40
363 364 8.293699 TCACACAACTCTAATAGAGCTGAATA 57.706 34.615 22.98 6.67 46.12 1.75
364 365 7.093552 ACTCACACAACTCTAATAGAGCTGAAT 60.094 37.037 22.98 10.40 46.12 2.57
365 366 6.209589 ACTCACACAACTCTAATAGAGCTGAA 59.790 38.462 22.98 8.07 46.12 3.02
366 367 5.712446 ACTCACACAACTCTAATAGAGCTGA 59.288 40.000 22.98 12.37 46.12 4.26
367 368 5.960113 ACTCACACAACTCTAATAGAGCTG 58.040 41.667 16.62 16.61 46.12 4.24
368 369 6.209589 TGAACTCACACAACTCTAATAGAGCT 59.790 38.462 16.62 2.09 46.12 4.09
369 370 6.390721 TGAACTCACACAACTCTAATAGAGC 58.609 40.000 16.62 0.00 46.12 4.09
371 372 7.761038 TCTGAACTCACACAACTCTAATAGA 57.239 36.000 0.00 0.00 0.00 1.98
372 373 8.994429 AATCTGAACTCACACAACTCTAATAG 57.006 34.615 0.00 0.00 0.00 1.73
373 374 9.208022 CAAATCTGAACTCACACAACTCTAATA 57.792 33.333 0.00 0.00 0.00 0.98
374 375 7.716998 ACAAATCTGAACTCACACAACTCTAAT 59.283 33.333 0.00 0.00 0.00 1.73
375 376 7.047891 ACAAATCTGAACTCACACAACTCTAA 58.952 34.615 0.00 0.00 0.00 2.10
376 377 6.582636 ACAAATCTGAACTCACACAACTCTA 58.417 36.000 0.00 0.00 0.00 2.43
377 378 5.431765 ACAAATCTGAACTCACACAACTCT 58.568 37.500 0.00 0.00 0.00 3.24
378 379 5.741388 ACAAATCTGAACTCACACAACTC 57.259 39.130 0.00 0.00 0.00 3.01
379 380 5.527582 GGTACAAATCTGAACTCACACAACT 59.472 40.000 0.00 0.00 0.00 3.16
380 381 5.295787 TGGTACAAATCTGAACTCACACAAC 59.704 40.000 0.00 0.00 31.92 3.32
381 382 5.432645 TGGTACAAATCTGAACTCACACAA 58.567 37.500 0.00 0.00 31.92 3.33
382 383 5.029807 TGGTACAAATCTGAACTCACACA 57.970 39.130 0.00 0.00 31.92 3.72
429 430 9.661187 CCGTCCGATAGTCATACAAATATATAC 57.339 37.037 0.00 0.00 0.00 1.47
430 431 9.617523 TCCGTCCGATAGTCATACAAATATATA 57.382 33.333 0.00 0.00 0.00 0.86
431 432 8.404000 GTCCGTCCGATAGTCATACAAATATAT 58.596 37.037 0.00 0.00 0.00 0.86
432 433 7.413328 CGTCCGTCCGATAGTCATACAAATATA 60.413 40.741 0.00 0.00 0.00 0.86
433 434 6.618811 GTCCGTCCGATAGTCATACAAATAT 58.381 40.000 0.00 0.00 0.00 1.28
434 435 5.334337 CGTCCGTCCGATAGTCATACAAATA 60.334 44.000 0.00 0.00 0.00 1.40
435 436 4.556104 CGTCCGTCCGATAGTCATACAAAT 60.556 45.833 0.00 0.00 0.00 2.32
436 437 3.242837 CGTCCGTCCGATAGTCATACAAA 60.243 47.826 0.00 0.00 0.00 2.83
437 438 2.288729 CGTCCGTCCGATAGTCATACAA 59.711 50.000 0.00 0.00 0.00 2.41
438 439 1.869132 CGTCCGTCCGATAGTCATACA 59.131 52.381 0.00 0.00 0.00 2.29
439 440 2.096516 GTCGTCCGTCCGATAGTCATAC 60.097 54.545 0.00 0.00 39.34 2.39
440 441 2.138320 GTCGTCCGTCCGATAGTCATA 58.862 52.381 0.00 0.00 39.34 2.15
441 442 0.942962 GTCGTCCGTCCGATAGTCAT 59.057 55.000 0.00 0.00 39.34 3.06
442 443 1.423721 CGTCGTCCGTCCGATAGTCA 61.424 60.000 0.00 0.00 39.34 3.41
443 444 1.275066 CGTCGTCCGTCCGATAGTC 59.725 63.158 0.00 0.00 39.34 2.59
444 445 2.176273 CCGTCGTCCGTCCGATAGT 61.176 63.158 0.00 0.00 39.34 2.12
445 446 2.630317 CCGTCGTCCGTCCGATAG 59.370 66.667 0.00 0.00 39.34 2.08
446 447 3.576356 GCCGTCGTCCGTCCGATA 61.576 66.667 0.00 0.00 39.34 2.92
451 452 3.996744 CTTCTCGCCGTCGTCCGTC 62.997 68.421 0.00 0.00 36.96 4.79
452 453 4.099170 CTTCTCGCCGTCGTCCGT 62.099 66.667 0.00 0.00 36.96 4.69
453 454 3.720106 CTCTTCTCGCCGTCGTCCG 62.720 68.421 0.00 0.00 36.96 4.79
454 455 2.100603 CTCTTCTCGCCGTCGTCC 59.899 66.667 0.00 0.00 36.96 4.79
455 456 2.577378 GCTCTTCTCGCCGTCGTC 60.577 66.667 0.00 0.00 36.96 4.20
456 457 3.329688 CTGCTCTTCTCGCCGTCGT 62.330 63.158 0.00 0.00 36.96 4.34
457 458 2.578178 CTGCTCTTCTCGCCGTCG 60.578 66.667 0.00 0.00 0.00 5.12
458 459 1.654954 TACCTGCTCTTCTCGCCGTC 61.655 60.000 0.00 0.00 0.00 4.79
459 460 1.658686 CTACCTGCTCTTCTCGCCGT 61.659 60.000 0.00 0.00 0.00 5.68
460 461 1.064946 CTACCTGCTCTTCTCGCCG 59.935 63.158 0.00 0.00 0.00 6.46
461 462 0.383949 CTCTACCTGCTCTTCTCGCC 59.616 60.000 0.00 0.00 0.00 5.54
462 463 0.383949 CCTCTACCTGCTCTTCTCGC 59.616 60.000 0.00 0.00 0.00 5.03
463 464 1.757682 ACCTCTACCTGCTCTTCTCG 58.242 55.000 0.00 0.00 0.00 4.04
464 465 4.159244 TCTACCTCTACCTGCTCTTCTC 57.841 50.000 0.00 0.00 0.00 2.87
465 466 4.594675 TTCTACCTCTACCTGCTCTTCT 57.405 45.455 0.00 0.00 0.00 2.85
466 467 5.596845 CATTTCTACCTCTACCTGCTCTTC 58.403 45.833 0.00 0.00 0.00 2.87
467 468 4.141824 GCATTTCTACCTCTACCTGCTCTT 60.142 45.833 0.00 0.00 0.00 2.85
468 469 3.386402 GCATTTCTACCTCTACCTGCTCT 59.614 47.826 0.00 0.00 0.00 4.09
469 470 3.493524 GGCATTTCTACCTCTACCTGCTC 60.494 52.174 0.00 0.00 0.00 4.26
470 471 2.436173 GGCATTTCTACCTCTACCTGCT 59.564 50.000 0.00 0.00 0.00 4.24
471 472 2.803492 CGGCATTTCTACCTCTACCTGC 60.803 54.545 0.00 0.00 0.00 4.85
472 473 2.693591 TCGGCATTTCTACCTCTACCTG 59.306 50.000 0.00 0.00 0.00 4.00
473 474 3.028094 TCGGCATTTCTACCTCTACCT 57.972 47.619 0.00 0.00 0.00 3.08
474 475 3.555168 CCATCGGCATTTCTACCTCTACC 60.555 52.174 0.00 0.00 0.00 3.18
475 476 3.069729 ACCATCGGCATTTCTACCTCTAC 59.930 47.826 0.00 0.00 0.00 2.59
476 477 3.069586 CACCATCGGCATTTCTACCTCTA 59.930 47.826 0.00 0.00 0.00 2.43
477 478 2.119495 ACCATCGGCATTTCTACCTCT 58.881 47.619 0.00 0.00 0.00 3.69
478 479 2.213499 CACCATCGGCATTTCTACCTC 58.787 52.381 0.00 0.00 0.00 3.85
479 480 1.559682 ACACCATCGGCATTTCTACCT 59.440 47.619 0.00 0.00 0.00 3.08
480 481 1.670811 CACACCATCGGCATTTCTACC 59.329 52.381 0.00 0.00 0.00 3.18
481 482 2.095853 CACACACCATCGGCATTTCTAC 59.904 50.000 0.00 0.00 0.00 2.59
482 483 2.027653 TCACACACCATCGGCATTTCTA 60.028 45.455 0.00 0.00 0.00 2.10
483 484 1.167851 CACACACCATCGGCATTTCT 58.832 50.000 0.00 0.00 0.00 2.52
484 485 1.164411 TCACACACCATCGGCATTTC 58.836 50.000 0.00 0.00 0.00 2.17
485 486 1.541147 CTTCACACACCATCGGCATTT 59.459 47.619 0.00 0.00 0.00 2.32
486 487 1.167851 CTTCACACACCATCGGCATT 58.832 50.000 0.00 0.00 0.00 3.56
487 488 0.324614 TCTTCACACACCATCGGCAT 59.675 50.000 0.00 0.00 0.00 4.40
488 489 0.107643 TTCTTCACACACCATCGGCA 59.892 50.000 0.00 0.00 0.00 5.69
489 490 1.453155 ATTCTTCACACACCATCGGC 58.547 50.000 0.00 0.00 0.00 5.54
490 491 6.367149 CAGATATATTCTTCACACACCATCGG 59.633 42.308 0.00 0.00 29.93 4.18
491 492 6.128715 GCAGATATATTCTTCACACACCATCG 60.129 42.308 0.00 0.00 29.93 3.84
492 493 6.707608 TGCAGATATATTCTTCACACACCATC 59.292 38.462 0.00 0.00 29.93 3.51
493 494 6.484643 GTGCAGATATATTCTTCACACACCAT 59.515 38.462 10.45 0.00 44.89 3.55
494 495 5.817296 GTGCAGATATATTCTTCACACACCA 59.183 40.000 10.45 0.00 44.89 4.17
495 496 5.050769 CGTGCAGATATATTCTTCACACACC 60.051 44.000 13.53 0.00 45.54 4.16
496 497 5.520288 ACGTGCAGATATATTCTTCACACAC 59.480 40.000 13.53 0.00 45.54 3.82
497 498 5.519927 CACGTGCAGATATATTCTTCACACA 59.480 40.000 0.82 0.00 45.54 3.72
498 499 5.557136 GCACGTGCAGATATATTCTTCACAC 60.557 44.000 34.52 0.00 45.54 3.82
499 500 4.507756 GCACGTGCAGATATATTCTTCACA 59.492 41.667 34.52 1.33 45.54 3.58
500 501 5.011451 GCACGTGCAGATATATTCTTCAC 57.989 43.478 34.52 0.00 42.91 3.18
515 516 3.935872 TGCGACTTGTGCACGTGC 61.936 61.111 33.11 33.11 37.44 5.34
520 521 2.962697 TACAGCGTGCGACTTGTGCA 62.963 55.000 0.00 0.00 40.70 4.57
521 522 1.626654 ATACAGCGTGCGACTTGTGC 61.627 55.000 0.00 0.00 0.00 4.57
522 523 0.790207 AATACAGCGTGCGACTTGTG 59.210 50.000 0.00 0.00 0.00 3.33
523 524 0.790207 CAATACAGCGTGCGACTTGT 59.210 50.000 0.00 0.00 0.00 3.16
524 525 1.067693 TCAATACAGCGTGCGACTTG 58.932 50.000 0.00 0.00 0.00 3.16
525 526 1.726791 CTTCAATACAGCGTGCGACTT 59.273 47.619 0.00 0.00 0.00 3.01
526 527 1.350193 CTTCAATACAGCGTGCGACT 58.650 50.000 0.00 0.00 0.00 4.18
527 528 0.247301 GCTTCAATACAGCGTGCGAC 60.247 55.000 0.00 0.00 0.00 5.19
528 529 2.078226 GCTTCAATACAGCGTGCGA 58.922 52.632 0.00 0.00 0.00 5.10
529 530 4.651317 GCTTCAATACAGCGTGCG 57.349 55.556 0.00 0.00 0.00 5.34
534 535 2.010145 TGTCTCCGCTTCAATACAGC 57.990 50.000 0.00 0.00 0.00 4.40
535 536 2.868583 CCATGTCTCCGCTTCAATACAG 59.131 50.000 0.00 0.00 0.00 2.74
536 537 2.905075 CCATGTCTCCGCTTCAATACA 58.095 47.619 0.00 0.00 0.00 2.29
537 538 1.599542 GCCATGTCTCCGCTTCAATAC 59.400 52.381 0.00 0.00 0.00 1.89
538 539 1.486310 AGCCATGTCTCCGCTTCAATA 59.514 47.619 0.00 0.00 0.00 1.90
539 540 0.254178 AGCCATGTCTCCGCTTCAAT 59.746 50.000 0.00 0.00 0.00 2.57
540 541 0.674581 CAGCCATGTCTCCGCTTCAA 60.675 55.000 0.00 0.00 0.00 2.69
541 542 1.078918 CAGCCATGTCTCCGCTTCA 60.079 57.895 0.00 0.00 0.00 3.02
542 543 1.817099 CCAGCCATGTCTCCGCTTC 60.817 63.158 0.00 0.00 0.00 3.86
543 544 2.270205 CCAGCCATGTCTCCGCTT 59.730 61.111 0.00 0.00 0.00 4.68
544 545 4.479993 GCCAGCCATGTCTCCGCT 62.480 66.667 0.00 0.00 0.00 5.52
545 546 4.479993 AGCCAGCCATGTCTCCGC 62.480 66.667 0.00 0.00 0.00 5.54
546 547 2.202987 GAGCCAGCCATGTCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
547 548 0.534652 GATGAGCCAGCCATGTCTCC 60.535 60.000 0.00 0.00 0.00 3.71
548 549 0.179702 TGATGAGCCAGCCATGTCTC 59.820 55.000 0.00 0.00 0.00 3.36
549 550 0.622136 TTGATGAGCCAGCCATGTCT 59.378 50.000 0.00 0.00 0.00 3.41
550 551 0.737219 GTTGATGAGCCAGCCATGTC 59.263 55.000 0.00 0.00 0.00 3.06
551 552 0.038599 TGTTGATGAGCCAGCCATGT 59.961 50.000 0.00 0.00 0.00 3.21
552 553 0.738975 CTGTTGATGAGCCAGCCATG 59.261 55.000 0.00 0.00 0.00 3.66
553 554 0.330604 ACTGTTGATGAGCCAGCCAT 59.669 50.000 0.00 0.00 0.00 4.40
554 555 0.321919 GACTGTTGATGAGCCAGCCA 60.322 55.000 0.00 0.00 0.00 4.75
555 556 1.364626 CGACTGTTGATGAGCCAGCC 61.365 60.000 0.00 0.00 0.00 4.85
556 557 1.364626 CCGACTGTTGATGAGCCAGC 61.365 60.000 0.00 0.00 0.00 4.85
557 558 1.364626 GCCGACTGTTGATGAGCCAG 61.365 60.000 0.00 0.00 0.00 4.85
558 559 1.375908 GCCGACTGTTGATGAGCCA 60.376 57.895 0.00 0.00 0.00 4.75
559 560 2.109126 GGCCGACTGTTGATGAGCC 61.109 63.158 0.00 0.00 0.00 4.70
560 561 2.456119 CGGCCGACTGTTGATGAGC 61.456 63.158 24.07 0.00 0.00 4.26
561 562 1.811266 CCGGCCGACTGTTGATGAG 60.811 63.158 30.73 0.00 0.00 2.90
562 563 2.225791 CTCCGGCCGACTGTTGATGA 62.226 60.000 30.73 10.99 0.00 2.92
563 564 1.811266 CTCCGGCCGACTGTTGATG 60.811 63.158 30.73 6.27 0.00 3.07
564 565 1.949847 CTCTCCGGCCGACTGTTGAT 61.950 60.000 30.73 0.00 0.00 2.57
565 566 2.599281 TCTCCGGCCGACTGTTGA 60.599 61.111 30.73 13.47 0.00 3.18
566 567 2.125912 CTCTCCGGCCGACTGTTG 60.126 66.667 30.73 8.93 0.00 3.33
567 568 4.070552 GCTCTCCGGCCGACTGTT 62.071 66.667 30.73 0.00 0.00 3.16
569 570 2.859273 AATTGCTCTCCGGCCGACTG 62.859 60.000 30.73 16.17 0.00 3.51
570 571 2.660064 AATTGCTCTCCGGCCGACT 61.660 57.895 30.73 0.00 0.00 4.18
571 572 2.125106 AATTGCTCTCCGGCCGAC 60.125 61.111 30.73 10.97 0.00 4.79
572 573 2.125147 CAATTGCTCTCCGGCCGA 60.125 61.111 30.73 12.25 0.00 5.54
573 574 2.436646 ACAATTGCTCTCCGGCCG 60.437 61.111 21.04 21.04 0.00 6.13
574 575 1.078143 AGACAATTGCTCTCCGGCC 60.078 57.895 5.05 0.00 0.00 6.13
575 576 1.986575 GCAGACAATTGCTCTCCGGC 61.987 60.000 5.05 4.61 40.89 6.13
576 577 0.674581 TGCAGACAATTGCTCTCCGG 60.675 55.000 5.05 0.00 44.38 5.14
577 578 1.063616 CATGCAGACAATTGCTCTCCG 59.936 52.381 5.05 0.00 44.38 4.63
578 579 2.089980 ACATGCAGACAATTGCTCTCC 58.910 47.619 5.05 0.00 44.38 3.71
579 580 2.745821 TCACATGCAGACAATTGCTCTC 59.254 45.455 5.05 0.00 44.38 3.20
580 581 2.486982 GTCACATGCAGACAATTGCTCT 59.513 45.455 5.05 5.10 44.38 4.09
581 582 2.227149 TGTCACATGCAGACAATTGCTC 59.773 45.455 16.58 2.73 42.57 4.26
582 583 2.030540 GTGTCACATGCAGACAATTGCT 60.031 45.455 19.51 0.69 46.50 3.91
583 584 2.287728 TGTGTCACATGCAGACAATTGC 60.288 45.455 19.51 10.34 46.50 3.56
584 585 3.302555 GTGTGTCACATGCAGACAATTG 58.697 45.455 19.51 3.24 46.50 2.32
585 586 2.031769 CGTGTGTCACATGCAGACAATT 60.032 45.455 19.51 0.00 46.50 2.32
586 587 1.532437 CGTGTGTCACATGCAGACAAT 59.468 47.619 19.51 0.00 46.50 2.71
587 588 0.936600 CGTGTGTCACATGCAGACAA 59.063 50.000 19.51 10.00 46.50 3.18
588 589 0.179086 ACGTGTGTCACATGCAGACA 60.179 50.000 22.50 15.35 43.23 3.41
589 590 0.233074 CACGTGTGTCACATGCAGAC 59.767 55.000 22.50 10.97 38.65 3.51
590 591 0.103937 TCACGTGTGTCACATGCAGA 59.896 50.000 22.50 17.78 38.65 4.26
591 592 0.509929 CTCACGTGTGTCACATGCAG 59.490 55.000 22.50 16.02 38.65 4.41
592 593 0.179086 ACTCACGTGTGTCACATGCA 60.179 50.000 22.50 10.40 38.65 3.96
593 594 1.778334 TACTCACGTGTGTCACATGC 58.222 50.000 25.06 4.45 38.65 4.06
594 595 4.990543 ATTTACTCACGTGTGTCACATG 57.009 40.909 25.06 21.25 40.80 3.21
595 596 4.625742 GCTATTTACTCACGTGTGTCACAT 59.374 41.667 25.06 17.09 33.40 3.21
596 597 3.985279 GCTATTTACTCACGTGTGTCACA 59.015 43.478 25.06 11.77 33.40 3.58
597 598 3.985279 TGCTATTTACTCACGTGTGTCAC 59.015 43.478 25.06 10.86 0.00 3.67
598 599 4.245845 TGCTATTTACTCACGTGTGTCA 57.754 40.909 25.06 13.17 0.00 3.58
599 600 6.880822 TTATGCTATTTACTCACGTGTGTC 57.119 37.500 25.06 11.42 0.00 3.67
600 601 7.386848 AGTTTTATGCTATTTACTCACGTGTGT 59.613 33.333 24.76 24.76 0.00 3.72
601 602 7.739295 AGTTTTATGCTATTTACTCACGTGTG 58.261 34.615 16.51 16.06 0.00 3.82
602 603 7.900782 AGTTTTATGCTATTTACTCACGTGT 57.099 32.000 16.51 0.00 0.00 4.49
603 604 9.084164 AGTAGTTTTATGCTATTTACTCACGTG 57.916 33.333 9.94 9.94 0.00 4.49
679 682 1.520600 CCCCGCGTTTGGTAGCTTTT 61.521 55.000 4.92 0.00 0.00 2.27
725 728 2.492881 TGGTTAAATCGCTAGTCACCGA 59.507 45.455 0.00 0.00 37.91 4.69
746 749 1.379527 GCCCGATCCGTCAGAAAAAT 58.620 50.000 0.00 0.00 0.00 1.82
747 750 0.675522 GGCCCGATCCGTCAGAAAAA 60.676 55.000 0.00 0.00 0.00 1.94
760 763 3.785859 GCTGACAGATGGGCCCGA 61.786 66.667 19.37 6.86 0.00 5.14
801 804 2.816520 GGCCGTTAATGTCCGCGT 60.817 61.111 4.92 0.00 0.00 6.01
882 895 1.917782 GCACGAGAGAGTGAGCGAGT 61.918 60.000 0.88 0.00 44.43 4.18
888 901 1.237954 AAGCGAGCACGAGAGAGTGA 61.238 55.000 8.01 0.00 44.43 3.41
907 920 1.986757 GAGAGCAGGGGAGTGAGCA 60.987 63.158 0.00 0.00 0.00 4.26
927 940 0.173708 CTCGTACTGGAGCAAGGGAC 59.826 60.000 0.00 0.00 0.00 4.46
989 1030 0.455815 GGAAGGCATTACGGCAAAGG 59.544 55.000 0.00 0.00 44.47 3.11
991 1032 1.173043 CAGGAAGGCATTACGGCAAA 58.827 50.000 0.00 0.00 44.47 3.68
998 1039 1.404986 CGTCGTTCCAGGAAGGCATTA 60.405 52.381 16.00 0.00 37.29 1.90
1225 1266 5.546499 TGTACAGAGATGAACCCTAGGTTTT 59.454 40.000 8.29 0.00 46.95 2.43
1226 1267 5.091552 TGTACAGAGATGAACCCTAGGTTT 58.908 41.667 8.29 0.00 46.95 3.27
1299 1341 2.950990 ACCAGAGATGAACCCTAGGT 57.049 50.000 8.29 0.00 37.65 3.08
1300 1342 4.901849 TCAATACCAGAGATGAACCCTAGG 59.098 45.833 0.06 0.06 0.00 3.02
1301 1343 5.600484 ACTCAATACCAGAGATGAACCCTAG 59.400 44.000 0.00 0.00 36.91 3.02
1302 1344 5.363868 CACTCAATACCAGAGATGAACCCTA 59.636 44.000 0.00 0.00 36.91 3.53
1305 1347 3.873952 GCACTCAATACCAGAGATGAACC 59.126 47.826 0.00 0.00 36.91 3.62
1307 1349 4.467438 TCTGCACTCAATACCAGAGATGAA 59.533 41.667 0.00 0.00 36.91 2.57
1309 1351 4.397481 TCTGCACTCAATACCAGAGATG 57.603 45.455 0.00 0.00 36.91 2.90
1310 1352 5.129980 TCAATCTGCACTCAATACCAGAGAT 59.870 40.000 0.00 0.00 37.70 2.75
1312 1354 4.763073 TCAATCTGCACTCAATACCAGAG 58.237 43.478 0.00 0.00 37.70 3.35
1327 1372 6.795399 ACCAACAAACACTAGTTTCAATCTG 58.205 36.000 0.00 0.00 45.80 2.90
1338 1383 7.014326 TGCAACCATAATAACCAACAAACACTA 59.986 33.333 0.00 0.00 0.00 2.74
1414 1459 1.927487 ATGCACTTGGGATGAGCAAA 58.073 45.000 0.00 0.00 38.85 3.68
1484 1529 2.116238 AGCCATAGAAACGCCTTCCTA 58.884 47.619 0.00 0.00 34.21 2.94
1526 1571 7.177216 TGAACATCCATAGCAGAAAACTTGATT 59.823 33.333 0.00 0.00 0.00 2.57
1529 1574 6.072286 ACTGAACATCCATAGCAGAAAACTTG 60.072 38.462 0.00 0.00 0.00 3.16
1598 1750 8.272889 GGACTAGTACCTTATTTCAATTCCCTT 58.727 37.037 0.00 0.00 0.00 3.95
1600 1752 7.571025 TGGACTAGTACCTTATTTCAATTCCC 58.429 38.462 1.66 0.00 0.00 3.97
1763 1915 0.482446 TTGTCCTGCACCCTTCCAAT 59.518 50.000 0.00 0.00 0.00 3.16
1774 1926 2.810852 CTCAAACTTCTCCTTGTCCTGC 59.189 50.000 0.00 0.00 0.00 4.85
1938 2090 1.880027 CTTGTTTCTGGTACACCTGCC 59.120 52.381 0.00 0.00 36.82 4.85
1961 2113 4.881019 TCTTCTCAAGTTCTTCCTCCTG 57.119 45.455 0.00 0.00 0.00 3.86
2191 2343 2.706339 ACTTCTCCTTGCTGCCATAG 57.294 50.000 0.00 0.00 0.00 2.23
2232 2384 3.461061 TCACAGCAAGTTCAAGACTCAG 58.539 45.455 0.00 0.00 37.72 3.35
2297 2449 2.353958 CAGTCATGCCAGGCCACT 59.646 61.111 9.64 5.42 0.00 4.00
2464 2617 7.649306 CCATTTCCACAACTTATTAGCATAAGC 59.351 37.037 4.19 0.00 44.18 3.09
2474 2627 8.906867 CATACAAGATCCATTTCCACAACTTAT 58.093 33.333 0.00 0.00 0.00 1.73
2546 2699 9.823647 CCCACAGAAATAATATATGTAGGCTAG 57.176 37.037 0.00 0.00 0.00 3.42
2661 2816 2.146146 GAAAGGGTGGGGGTGGGTAC 62.146 65.000 0.00 0.00 0.00 3.34
2663 2818 3.190391 GAAAGGGTGGGGGTGGGT 61.190 66.667 0.00 0.00 0.00 4.51
2731 2887 2.238144 CCTCTGTGACATCTCCCATGTT 59.762 50.000 0.00 0.00 31.52 2.71
2851 3016 2.298163 GTCGGTGGTTGAACTCCTCTTA 59.702 50.000 0.00 0.00 0.00 2.10
2867 3032 1.617357 GTACCTTGTTGGAGAGTCGGT 59.383 52.381 0.00 0.00 39.71 4.69
2917 3082 2.840066 CGCCGCCAGTGAAAACCAA 61.840 57.895 0.00 0.00 0.00 3.67
2935 3100 0.926293 TCCATGAATGACCTTCCCCC 59.074 55.000 0.00 0.00 32.49 5.40
3185 3377 6.267496 GGTGCTGACCAAGTACATTTATTT 57.733 37.500 0.00 0.00 42.87 1.40
3199 3391 4.255833 TGAAAAATTGATGGTGCTGACC 57.744 40.909 0.00 0.00 43.48 4.02
3200 3392 5.176223 CACTTGAAAAATTGATGGTGCTGAC 59.824 40.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.