Multiple sequence alignment - TraesCS5B01G025100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G025100 chr5B 100.000 5964 0 0 1417 7380 24013697 24007734 0.000000e+00 11014.0
1 TraesCS5B01G025100 chr5B 100.000 1105 0 0 1 1105 24015113 24014009 0.000000e+00 2041.0
2 TraesCS5B01G025100 chr5B 92.802 514 35 2 6865 7377 703176094 703175582 0.000000e+00 743.0
3 TraesCS5B01G025100 chr5B 92.802 514 34 3 6865 7377 667771672 667771161 0.000000e+00 741.0
4 TraesCS5B01G025100 chr5B 82.716 81 14 0 1009 1089 551338736 551338656 1.030000e-08 73.1
5 TraesCS5B01G025100 chr5D 95.236 2246 78 14 1417 3648 32302982 32300752 0.000000e+00 3528.0
6 TraesCS5B01G025100 chr5D 89.078 2060 96 45 3687 5722 32300755 32298801 0.000000e+00 2438.0
7 TraesCS5B01G025100 chr5D 91.976 1159 54 20 5730 6865 32298743 32297601 0.000000e+00 1589.0
8 TraesCS5B01G025100 chr5D 89.423 1144 51 28 1 1105 32304158 32303046 0.000000e+00 1378.0
9 TraesCS5B01G025100 chr5D 93.191 514 33 2 6865 7376 157060475 157060988 0.000000e+00 754.0
10 TraesCS5B01G025100 chr5D 97.619 42 1 0 1939 1980 32302418 32302377 1.030000e-08 73.1
11 TraesCS5B01G025100 chr5D 82.716 81 14 0 1009 1089 451136972 451136892 1.030000e-08 73.1
12 TraesCS5B01G025100 chr5D 91.837 49 3 1 1979 2026 32302468 32302420 4.780000e-07 67.6
13 TraesCS5B01G025100 chr5A 93.377 1374 71 9 1979 3347 20997692 20996334 0.000000e+00 2015.0
14 TraesCS5B01G025100 chr5A 86.425 1768 107 56 4028 5742 20995612 20993925 0.000000e+00 1812.0
15 TraesCS5B01G025100 chr5A 90.459 1132 53 21 5757 6861 20993852 20992749 0.000000e+00 1441.0
16 TraesCS5B01G025100 chr5A 91.679 697 28 15 421 1105 20998981 20998303 0.000000e+00 939.0
17 TraesCS5B01G025100 chr5A 90.877 570 38 8 1417 1980 20998209 20997648 0.000000e+00 752.0
18 TraesCS5B01G025100 chr5A 91.317 357 16 2 3687 4041 20995979 20995636 2.410000e-129 473.0
19 TraesCS5B01G025100 chr5A 94.667 300 10 4 1 295 20999305 20999007 1.880000e-125 460.0
20 TraesCS5B01G025100 chr5A 91.456 316 18 4 3332 3645 20996284 20995976 6.840000e-115 425.0
21 TraesCS5B01G025100 chr5A 89.706 68 4 3 3644 3711 581308368 581308432 4.740000e-12 84.2
22 TraesCS5B01G025100 chr5A 88.235 68 6 2 3644 3711 676996 676931 6.140000e-11 80.5
23 TraesCS5B01G025100 chr5A 82.716 81 12 1 1009 1089 570331536 570331458 3.690000e-08 71.3
24 TraesCS5B01G025100 chr1D 94.004 517 29 2 6863 7378 116932862 116933377 0.000000e+00 782.0
25 TraesCS5B01G025100 chr7D 93.992 516 30 1 6864 7378 25023457 25022942 0.000000e+00 780.0
26 TraesCS5B01G025100 chr6D 93.256 519 30 4 6865 7380 346680010 346680526 0.000000e+00 760.0
27 TraesCS5B01G025100 chr6D 85.185 81 4 8 3642 3718 261280421 261280497 7.940000e-10 76.8
28 TraesCS5B01G025100 chr6B 93.230 517 31 3 6863 7378 365715995 365716508 0.000000e+00 758.0
29 TraesCS5B01G025100 chr6B 87.671 73 5 4 3638 3709 465696541 465696610 1.710000e-11 82.4
30 TraesCS5B01G025100 chr3B 92.773 512 35 2 6865 7375 458015770 458016280 0.000000e+00 739.0
31 TraesCS5B01G025100 chr3B 97.500 40 1 0 832 871 578635387 578635426 1.330000e-07 69.4
32 TraesCS5B01G025100 chr7B 92.442 516 37 2 6864 7378 275508927 275508413 0.000000e+00 736.0
33 TraesCS5B01G025100 chr7B 94.643 56 3 0 3636 3691 524615473 524615418 3.670000e-13 87.9
34 TraesCS5B01G025100 chr7A 96.429 56 2 0 3631 3686 608875210 608875155 7.880000e-15 93.5
35 TraesCS5B01G025100 chr7A 87.500 72 6 3 3641 3712 483334915 483334983 6.140000e-11 80.5
36 TraesCS5B01G025100 chr2A 92.063 63 3 2 3632 3693 559592110 559592049 3.670000e-13 87.9
37 TraesCS5B01G025100 chr1A 89.552 67 4 3 3645 3711 78795265 78795328 1.710000e-11 82.4
38 TraesCS5B01G025100 chr1A 83.951 81 9 4 3642 3721 541320681 541320604 2.860000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G025100 chr5B 24007734 24015113 7379 True 6527.500000 11014 100.000000 1 7380 2 chr5B.!!$R4 7379
1 TraesCS5B01G025100 chr5B 703175582 703176094 512 True 743.000000 743 92.802000 6865 7377 1 chr5B.!!$R3 512
2 TraesCS5B01G025100 chr5B 667771161 667771672 511 True 741.000000 741 92.802000 6865 7377 1 chr5B.!!$R2 512
3 TraesCS5B01G025100 chr5D 32297601 32304158 6557 True 1512.283333 3528 92.528167 1 6865 6 chr5D.!!$R2 6864
4 TraesCS5B01G025100 chr5D 157060475 157060988 513 False 754.000000 754 93.191000 6865 7376 1 chr5D.!!$F1 511
5 TraesCS5B01G025100 chr5A 20992749 20999305 6556 True 1039.625000 2015 91.282125 1 6861 8 chr5A.!!$R3 6860
6 TraesCS5B01G025100 chr1D 116932862 116933377 515 False 782.000000 782 94.004000 6863 7378 1 chr1D.!!$F1 515
7 TraesCS5B01G025100 chr7D 25022942 25023457 515 True 780.000000 780 93.992000 6864 7378 1 chr7D.!!$R1 514
8 TraesCS5B01G025100 chr6D 346680010 346680526 516 False 760.000000 760 93.256000 6865 7380 1 chr6D.!!$F2 515
9 TraesCS5B01G025100 chr6B 365715995 365716508 513 False 758.000000 758 93.230000 6863 7378 1 chr6B.!!$F1 515
10 TraesCS5B01G025100 chr3B 458015770 458016280 510 False 739.000000 739 92.773000 6865 7375 1 chr3B.!!$F1 510
11 TraesCS5B01G025100 chr7B 275508413 275508927 514 True 736.000000 736 92.442000 6864 7378 1 chr7B.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 497 0.032403 TCGACGGTCGGATGTTTTGT 59.968 50.000 28.07 0.0 40.88 2.83 F
486 498 0.863144 CGACGGTCGGATGTTTTGTT 59.137 50.000 22.18 0.0 36.00 2.83 F
1757 1808 0.177141 GGCCCGTCTGTGCACTTATA 59.823 55.000 19.41 0.0 0.00 0.98 F
1758 1809 1.202651 GGCCCGTCTGTGCACTTATAT 60.203 52.381 19.41 0.0 0.00 0.86 F
3659 3789 1.637553 ACTACTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.0 0.00 3.53 F
3958 4090 0.107703 TGAGATTGTCCATCCACGGC 60.108 55.000 0.00 0.0 31.20 5.68 F
5312 5512 0.452784 GCAACGGCTTCATTCGTGAC 60.453 55.000 0.00 0.0 39.70 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1444 1490 1.191535 TTGGTCAACCGATCGATCCT 58.808 50.000 18.66 2.07 39.43 3.24 R
1998 2053 1.477700 GGCACATGCATGGTGTACAAT 59.522 47.619 29.41 3.93 44.36 2.71 R
3705 3835 0.107214 GGTGCCCTCCGATTTCATCA 60.107 55.000 0.00 0.00 0.00 3.07 R
3712 3842 1.305802 TACAGTGGTGCCCTCCGAT 60.306 57.895 0.00 0.00 0.00 4.18 R
5255 5455 0.539051 GGCTGCTCTCCTACATGTGT 59.461 55.000 9.11 0.00 0.00 3.72 R
5867 6174 0.319900 GAACACGCTGCCTCTTCTCA 60.320 55.000 0.00 0.00 0.00 3.27 R
6861 7214 1.003839 CTCGTTTGCAGCCCTACCA 60.004 57.895 0.00 0.00 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 6.183360 TGCGTGGACGTACATATATCTATCTG 60.183 42.308 2.42 0.00 42.22 2.90
279 284 0.611896 CAAAAGGAGGATTGCCCCGT 60.612 55.000 0.00 0.00 34.66 5.28
281 286 1.208165 AAAGGAGGATTGCCCCGTCT 61.208 55.000 0.00 0.00 34.66 4.18
295 305 1.860950 CCCGTCTTCTGCATCATTACG 59.139 52.381 0.00 0.00 0.00 3.18
296 306 1.860950 CCGTCTTCTGCATCATTACGG 59.139 52.381 11.66 11.66 41.92 4.02
297 307 2.540515 CGTCTTCTGCATCATTACGGT 58.459 47.619 0.00 0.00 0.00 4.83
298 308 2.282555 CGTCTTCTGCATCATTACGGTG 59.717 50.000 0.00 0.00 0.00 4.94
300 310 2.009051 CTTCTGCATCATTACGGTGCA 58.991 47.619 0.00 0.00 45.69 4.57
301 311 1.368641 TCTGCATCATTACGGTGCAC 58.631 50.000 8.80 8.80 43.30 4.57
351 362 8.568794 GGTTGAAGAAAATATATAACCAGGAGC 58.431 37.037 0.00 0.00 36.86 4.70
415 426 1.001633 TGGTTTTCTCCGGCAGAGTAC 59.998 52.381 0.00 3.22 43.71 2.73
430 441 2.365293 AGAGTACATGCACAGTCACACA 59.635 45.455 0.00 0.00 0.00 3.72
478 490 1.997606 GTGATTTTTCGACGGTCGGAT 59.002 47.619 28.07 17.13 40.88 4.18
479 491 1.996898 TGATTTTTCGACGGTCGGATG 59.003 47.619 28.07 2.57 40.88 3.51
480 492 1.997606 GATTTTTCGACGGTCGGATGT 59.002 47.619 28.07 10.33 40.88 3.06
482 494 1.868469 TTTTCGACGGTCGGATGTTT 58.132 45.000 28.07 0.00 40.88 2.83
484 496 1.141645 TTCGACGGTCGGATGTTTTG 58.858 50.000 28.07 0.00 40.88 2.44
485 497 0.032403 TCGACGGTCGGATGTTTTGT 59.968 50.000 28.07 0.00 40.88 2.83
486 498 0.863144 CGACGGTCGGATGTTTTGTT 59.137 50.000 22.18 0.00 36.00 2.83
487 499 1.397945 CGACGGTCGGATGTTTTGTTG 60.398 52.381 22.18 0.00 36.00 3.33
488 500 0.948678 ACGGTCGGATGTTTTGTTGG 59.051 50.000 0.00 0.00 0.00 3.77
490 502 1.604755 CGGTCGGATGTTTTGTTGGAA 59.395 47.619 0.00 0.00 0.00 3.53
492 504 3.638484 GGTCGGATGTTTTGTTGGAAAG 58.362 45.455 0.00 0.00 0.00 2.62
493 505 3.316868 GGTCGGATGTTTTGTTGGAAAGA 59.683 43.478 0.00 0.00 0.00 2.52
494 506 4.202070 GGTCGGATGTTTTGTTGGAAAGAA 60.202 41.667 0.00 0.00 0.00 2.52
495 507 4.738252 GTCGGATGTTTTGTTGGAAAGAAC 59.262 41.667 0.00 0.00 0.00 3.01
496 508 4.642885 TCGGATGTTTTGTTGGAAAGAACT 59.357 37.500 0.00 0.00 0.00 3.01
497 509 5.126384 TCGGATGTTTTGTTGGAAAGAACTT 59.874 36.000 0.00 0.00 0.00 2.66
498 510 5.458779 CGGATGTTTTGTTGGAAAGAACTTC 59.541 40.000 0.00 0.00 0.00 3.01
499 511 6.573434 GGATGTTTTGTTGGAAAGAACTTCT 58.427 36.000 0.00 0.00 34.17 2.85
500 512 6.697455 GGATGTTTTGTTGGAAAGAACTTCTC 59.303 38.462 0.00 0.00 34.17 2.87
501 513 5.961272 TGTTTTGTTGGAAAGAACTTCTCC 58.039 37.500 0.00 0.00 34.17 3.71
502 514 5.105513 TGTTTTGTTGGAAAGAACTTCTCCC 60.106 40.000 0.00 0.00 34.17 4.30
546 558 1.610522 GTTTGCTTGCTGGTGACTGAT 59.389 47.619 0.00 0.00 0.00 2.90
579 591 2.616960 TGCACACTAACGATGTGGATC 58.383 47.619 7.20 0.00 46.22 3.36
581 593 2.418746 GCACACTAACGATGTGGATCCT 60.419 50.000 14.23 0.00 46.22 3.24
690 702 1.127343 CCAACCCCCATCTCTCTCTC 58.873 60.000 0.00 0.00 0.00 3.20
721 733 4.878968 TCTCCTACTCTCTCTCTCTCTCA 58.121 47.826 0.00 0.00 0.00 3.27
724 736 5.773091 TCCTACTCTCTCTCTCTCTCACTA 58.227 45.833 0.00 0.00 0.00 2.74
742 788 6.666980 TCTCACTAGAGCCATAGCATCAATAT 59.333 38.462 0.00 0.00 43.56 1.28
805 851 4.045207 TCCTCTCTGCCCATACATATCTCT 59.955 45.833 0.00 0.00 0.00 3.10
806 852 4.402155 CCTCTCTGCCCATACATATCTCTC 59.598 50.000 0.00 0.00 0.00 3.20
807 853 5.263599 CTCTCTGCCCATACATATCTCTCT 58.736 45.833 0.00 0.00 0.00 3.10
808 854 5.260424 TCTCTGCCCATACATATCTCTCTC 58.740 45.833 0.00 0.00 0.00 3.20
835 881 3.635373 TCCATCGATCTAACCTACACACC 59.365 47.826 0.00 0.00 0.00 4.16
941 987 2.317609 CCTGTTGAACCTCGCCGTG 61.318 63.158 0.00 0.00 0.00 4.94
992 1038 1.754745 GCGCCAGGGGATAATCAGA 59.245 57.895 7.95 0.00 0.00 3.27
997 1043 2.443255 GCCAGGGGATAATCAGAAGGAA 59.557 50.000 0.00 0.00 0.00 3.36
998 1044 3.497584 GCCAGGGGATAATCAGAAGGAAG 60.498 52.174 0.00 0.00 0.00 3.46
999 1045 3.976654 CCAGGGGATAATCAGAAGGAAGA 59.023 47.826 0.00 0.00 0.00 2.87
1023 1069 2.678580 TCGTCGGGCCAGATCACA 60.679 61.111 9.39 0.00 0.00 3.58
1085 1131 3.451504 CCGTACTCGCGGTAAGATC 57.548 57.895 17.31 0.00 46.11 2.75
1094 1140 2.094700 TCGCGGTAAGATCTCCATATGC 60.095 50.000 6.13 0.00 0.00 3.14
1441 1487 4.248859 TCTGCCAAGAAAAGAGAGATTCG 58.751 43.478 0.00 0.00 0.00 3.34
1444 1490 3.997021 GCCAAGAAAAGAGAGATTCGTCA 59.003 43.478 0.00 0.00 0.00 4.35
1447 1493 5.473931 CAAGAAAAGAGAGATTCGTCAGGA 58.526 41.667 0.00 0.00 0.00 3.86
1448 1494 5.930837 AGAAAAGAGAGATTCGTCAGGAT 57.069 39.130 0.00 0.00 0.00 3.24
1449 1495 5.901552 AGAAAAGAGAGATTCGTCAGGATC 58.098 41.667 0.00 0.00 0.00 3.36
1490 1538 3.198872 GGCCTGTCTAATGTTGTAGAGC 58.801 50.000 0.00 0.00 30.70 4.09
1494 1542 6.015350 GGCCTGTCTAATGTTGTAGAGCTATA 60.015 42.308 0.00 0.00 30.70 1.31
1587 1635 6.994421 ATATTGTGGGTTCTTCCTTTTTGT 57.006 33.333 0.00 0.00 36.25 2.83
1610 1658 2.451490 TGTTGCCAGTTTGTTGGAGAA 58.549 42.857 0.00 0.00 40.87 2.87
1620 1668 7.141363 CCAGTTTGTTGGAGAATTGTCTAAAG 58.859 38.462 2.85 0.00 40.87 1.85
1647 1695 7.595819 AACCAAAAGAACAACAATCCTATCA 57.404 32.000 0.00 0.00 0.00 2.15
1668 1716 9.264719 CTATCAAAAGAAAACAGGAAGCATTTT 57.735 29.630 0.00 0.00 0.00 1.82
1692 1740 6.157536 TCCCCCTTCCTTAATTATGATCTCA 58.842 40.000 0.00 0.00 0.00 3.27
1706 1756 4.789012 TGATCTCAATTTTGCCTTGGAC 57.211 40.909 0.00 0.00 0.00 4.02
1757 1808 0.177141 GGCCCGTCTGTGCACTTATA 59.823 55.000 19.41 0.00 0.00 0.98
1758 1809 1.202651 GGCCCGTCTGTGCACTTATAT 60.203 52.381 19.41 0.00 0.00 0.86
1759 1810 2.036733 GGCCCGTCTGTGCACTTATATA 59.963 50.000 19.41 0.00 0.00 0.86
1760 1811 3.306780 GGCCCGTCTGTGCACTTATATAT 60.307 47.826 19.41 0.00 0.00 0.86
1869 1920 4.216902 TCATGCATTCTCCTTGTGTTTCAG 59.783 41.667 0.00 0.00 0.00 3.02
1966 2021 5.828747 ACTAGTAGTATTGTACACCATGCG 58.171 41.667 0.00 0.00 0.00 4.73
1993 2048 9.158233 TGTGCCAAAGTTATCAAATACTAGTAC 57.842 33.333 4.31 0.00 0.00 2.73
2204 2259 5.014018 TGGGCCTGATAAGTTATATGCATGA 59.986 40.000 10.16 0.00 0.00 3.07
2205 2260 5.945784 GGGCCTGATAAGTTATATGCATGAA 59.054 40.000 10.16 0.04 0.00 2.57
2328 2383 7.801716 TGTCTATGAAATTAATAGGTGCCAC 57.198 36.000 0.00 0.00 0.00 5.01
2333 2388 5.321102 TGAAATTAATAGGTGCCACTGTGT 58.679 37.500 7.08 0.00 0.00 3.72
2460 2518 8.991275 TGGCATGGAATAATAAAGATCCTTTTT 58.009 29.630 0.00 0.00 33.02 1.94
2485 2543 4.515191 TGTTTGGAATCCTTTCTCGTGAAG 59.485 41.667 0.00 0.00 33.28 3.02
2840 2898 4.023450 GGGGTAAAAGAAAGTTTGGACTCG 60.023 45.833 0.00 0.00 34.21 4.18
2874 2932 6.592607 GGTCCTCGTGTGTAAAGATATTTTGA 59.407 38.462 0.00 0.00 0.00 2.69
2878 2936 8.331022 CCTCGTGTGTAAAGATATTTTGATGAG 58.669 37.037 0.00 0.00 0.00 2.90
2945 3003 5.968528 ATTTAAACCATGCGACAAACCTA 57.031 34.783 0.00 0.00 0.00 3.08
2999 3057 5.314923 ACTGCAGCCAATGTTAATTACTG 57.685 39.130 15.27 0.00 34.50 2.74
3074 3132 4.534168 CTTTTAGCTTGATCATGCATCCG 58.466 43.478 29.04 13.38 34.33 4.18
3075 3133 3.473923 TTAGCTTGATCATGCATCCGA 57.526 42.857 29.04 11.58 34.33 4.55
3102 3163 3.813724 CAGGGATAGTCAATGAGCATGTG 59.186 47.826 0.00 0.00 0.00 3.21
3362 3488 7.988737 TCCTTTGCATAGATCACTAACATTTG 58.011 34.615 5.65 0.00 32.04 2.32
3434 3563 8.607441 TCAATCTTCCACCTTATCATTAATCG 57.393 34.615 0.00 0.00 0.00 3.34
3446 3575 7.165812 CCTTATCATTAATCGGCAAGAAAAACG 59.834 37.037 0.00 0.00 0.00 3.60
3624 3754 6.077838 CGCCGAGCTTAATTATGATTAAACC 58.922 40.000 4.44 0.00 37.30 3.27
3648 3778 9.000486 ACCAAGCTATTTTCAAAACTACTACTC 58.000 33.333 0.00 0.00 0.00 2.59
3649 3779 8.451748 CCAAGCTATTTTCAAAACTACTACTCC 58.548 37.037 0.00 0.00 0.00 3.85
3650 3780 8.451748 CAAGCTATTTTCAAAACTACTACTCCC 58.548 37.037 0.00 0.00 0.00 4.30
3651 3781 7.919151 AGCTATTTTCAAAACTACTACTCCCT 58.081 34.615 0.00 0.00 0.00 4.20
3652 3782 8.041919 AGCTATTTTCAAAACTACTACTCCCTC 58.958 37.037 0.00 0.00 0.00 4.30
3653 3783 7.280428 GCTATTTTCAAAACTACTACTCCCTCC 59.720 40.741 0.00 0.00 0.00 4.30
3654 3784 4.796038 TTCAAAACTACTACTCCCTCCG 57.204 45.455 0.00 0.00 0.00 4.63
3655 3785 3.771216 TCAAAACTACTACTCCCTCCGT 58.229 45.455 0.00 0.00 0.00 4.69
3656 3786 4.154942 TCAAAACTACTACTCCCTCCGTT 58.845 43.478 0.00 0.00 0.00 4.44
3657 3787 4.219288 TCAAAACTACTACTCCCTCCGTTC 59.781 45.833 0.00 0.00 0.00 3.95
3658 3788 2.433662 ACTACTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
3659 3789 1.637553 ACTACTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
3660 3790 2.042162 ACTACTACTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
3661 3791 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
3662 3792 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
3663 3793 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
3664 3794 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
3665 3795 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3666 3796 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3667 3797 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
3668 3798 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
3669 3799 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
3670 3800 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
3671 3801 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
3672 3802 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
3673 3803 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
3674 3804 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
3675 3805 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
3676 3806 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
3677 3807 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
3678 3808 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
3679 3809 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
3680 3810 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
3681 3811 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
3682 3812 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
3683 3813 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
3684 3814 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
3685 3815 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
3686 3816 4.374399 ACTCGTCGTGGTTTTAGTTCAAT 58.626 39.130 0.00 0.00 0.00 2.57
3687 3817 5.531634 ACTCGTCGTGGTTTTAGTTCAATA 58.468 37.500 0.00 0.00 0.00 1.90
3688 3818 5.403466 ACTCGTCGTGGTTTTAGTTCAATAC 59.597 40.000 0.00 0.00 0.00 1.89
3689 3819 5.531634 TCGTCGTGGTTTTAGTTCAATACT 58.468 37.500 0.00 0.00 41.04 2.12
3704 3834 6.594159 AGTTCAATACTTGTGAGATAAACCCG 59.406 38.462 0.00 0.00 31.29 5.28
3705 3835 6.045072 TCAATACTTGTGAGATAAACCCGT 57.955 37.500 0.00 0.00 0.00 5.28
3712 3842 4.900684 TGTGAGATAAACCCGTGATGAAA 58.099 39.130 0.00 0.00 0.00 2.69
3807 3937 3.130633 GCATGTGAGTGTGTGTGAAGTA 58.869 45.455 0.00 0.00 0.00 2.24
3956 4088 3.957671 CAATGAGATTGTCCATCCACG 57.042 47.619 0.00 0.00 35.57 4.94
3958 4090 0.107703 TGAGATTGTCCATCCACGGC 60.108 55.000 0.00 0.00 31.20 5.68
4013 4145 6.371825 TCACAAACATACAAACACACACAGTA 59.628 34.615 0.00 0.00 0.00 2.74
4025 4157 3.062099 CACACACAGTAACACTCACACAC 59.938 47.826 0.00 0.00 0.00 3.82
4026 4158 3.258228 CACACAGTAACACTCACACACA 58.742 45.455 0.00 0.00 0.00 3.72
4060 4227 5.819379 CAGAGAGCTAATTAATCTGGCACAA 59.181 40.000 4.92 0.00 38.70 3.33
4085 4252 5.794687 TGCAATTAATCCGTCTTGTGTAG 57.205 39.130 0.00 0.00 0.00 2.74
4110 4286 8.417106 AGCATATGTATATGTATAGGTGTGAGC 58.583 37.037 12.14 0.00 41.63 4.26
4233 4409 5.221501 TGCCCAAAAGGAAGAGATGAAAAAG 60.222 40.000 0.00 0.00 38.24 2.27
4302 4478 1.452145 TTGTCGTGCTCCCAAAAGGC 61.452 55.000 0.00 0.00 34.51 4.35
4400 4587 6.192234 TGGTTAAAGTAGAAACGTGCAAAA 57.808 33.333 0.00 0.00 0.00 2.44
4411 4598 3.405170 ACGTGCAAAACAAAGTGAGAG 57.595 42.857 0.00 0.00 0.00 3.20
4412 4599 2.097466 ACGTGCAAAACAAAGTGAGAGG 59.903 45.455 0.00 0.00 0.00 3.69
4413 4600 2.354510 CGTGCAAAACAAAGTGAGAGGA 59.645 45.455 0.00 0.00 0.00 3.71
4414 4601 3.181501 CGTGCAAAACAAAGTGAGAGGAA 60.182 43.478 0.00 0.00 0.00 3.36
4415 4602 4.674101 CGTGCAAAACAAAGTGAGAGGAAA 60.674 41.667 0.00 0.00 0.00 3.13
4425 4612 4.156455 AGTGAGAGGAAAGAAAGCAACA 57.844 40.909 0.00 0.00 0.00 3.33
4494 4681 6.180472 TCCAATCTACCTTGATCTTTGGTTC 58.820 40.000 9.43 0.00 35.48 3.62
4495 4682 5.358160 CCAATCTACCTTGATCTTTGGTTCC 59.642 44.000 9.43 0.00 35.48 3.62
4496 4683 4.569719 TCTACCTTGATCTTTGGTTCCC 57.430 45.455 9.43 0.00 35.48 3.97
4497 4684 4.175962 TCTACCTTGATCTTTGGTTCCCT 58.824 43.478 9.43 0.00 35.48 4.20
4498 4685 3.441500 ACCTTGATCTTTGGTTCCCTC 57.558 47.619 0.00 0.00 0.00 4.30
4501 4688 0.999712 TGATCTTTGGTTCCCTCCCC 59.000 55.000 0.00 0.00 0.00 4.81
4537 4725 5.291178 TGTCTTTTTGCTTGGATCAACATG 58.709 37.500 0.00 0.00 0.00 3.21
4554 4742 3.525537 ACATGTGCTCTGGATTCTAACG 58.474 45.455 0.00 0.00 0.00 3.18
4560 4748 3.704566 TGCTCTGGATTCTAACGTATGGT 59.295 43.478 0.00 0.00 0.00 3.55
4561 4749 4.202121 TGCTCTGGATTCTAACGTATGGTC 60.202 45.833 0.00 0.00 0.00 4.02
4562 4750 4.537965 CTCTGGATTCTAACGTATGGTCG 58.462 47.826 0.00 0.00 0.00 4.79
4563 4751 3.317149 TCTGGATTCTAACGTATGGTCGG 59.683 47.826 0.00 0.00 34.94 4.79
4570 4758 0.896923 AACGTATGGTCGGTTAGCCA 59.103 50.000 0.00 0.00 39.33 4.75
4586 4774 5.395214 GGTTAGCCATTGGTTAATTCTTGGG 60.395 44.000 14.16 0.00 31.53 4.12
4594 4782 7.444299 CATTGGTTAATTCTTGGGATATTGGG 58.556 38.462 0.00 0.00 0.00 4.12
4595 4783 5.463154 TGGTTAATTCTTGGGATATTGGGG 58.537 41.667 0.00 0.00 0.00 4.96
4602 4790 1.859302 TGGGATATTGGGGTTTGTGC 58.141 50.000 0.00 0.00 0.00 4.57
4639 4827 1.133790 GGGAACAGCATGCTCAACATC 59.866 52.381 19.68 11.26 42.53 3.06
4654 4842 2.094659 CATCGTGACAGTCCGGTGC 61.095 63.158 0.00 0.00 0.00 5.01
4708 4896 2.821366 GGGCAGATGCACTCACCG 60.821 66.667 7.19 0.00 42.27 4.94
4752 4940 2.494471 AGGTTCGTTGACCGATGATACA 59.506 45.455 0.00 0.00 46.75 2.29
4753 4941 3.132289 AGGTTCGTTGACCGATGATACAT 59.868 43.478 0.00 0.00 46.75 2.29
4754 4942 3.245284 GGTTCGTTGACCGATGATACATG 59.755 47.826 0.00 0.00 46.75 3.21
4757 4945 2.802247 CGTTGACCGATGATACATGCAT 59.198 45.455 0.00 0.00 39.56 3.96
4758 4946 3.363280 CGTTGACCGATGATACATGCATG 60.363 47.826 25.09 25.09 39.56 4.06
4759 4947 2.145536 TGACCGATGATACATGCATGC 58.854 47.619 26.53 11.82 0.00 4.06
4760 4948 2.224354 TGACCGATGATACATGCATGCT 60.224 45.455 26.53 14.22 0.00 3.79
4761 4949 2.148768 ACCGATGATACATGCATGCTG 58.851 47.619 26.53 16.29 0.00 4.41
4763 4951 2.551032 CCGATGATACATGCATGCTGTT 59.449 45.455 26.53 9.67 0.00 3.16
4766 4954 4.260866 CGATGATACATGCATGCTGTTCAA 60.261 41.667 26.53 6.53 0.00 2.69
4767 4955 5.584442 GATGATACATGCATGCTGTTCAAA 58.416 37.500 26.53 6.15 0.00 2.69
4769 4957 5.968254 TGATACATGCATGCTGTTCAAATT 58.032 33.333 26.53 5.50 0.00 1.82
4770 4958 7.098074 TGATACATGCATGCTGTTCAAATTA 57.902 32.000 26.53 7.64 0.00 1.40
4771 4959 7.718525 TGATACATGCATGCTGTTCAAATTAT 58.281 30.769 26.53 12.05 0.00 1.28
4772 4960 7.650104 TGATACATGCATGCTGTTCAAATTATG 59.350 33.333 26.53 12.01 0.00 1.90
4774 4962 6.578944 ACATGCATGCTGTTCAAATTATGAT 58.421 32.000 26.53 0.00 38.03 2.45
4776 4964 8.198778 ACATGCATGCTGTTCAAATTATGATAA 58.801 29.630 26.53 0.00 38.03 1.75
4777 4965 9.036671 CATGCATGCTGTTCAAATTATGATAAA 57.963 29.630 20.33 0.00 38.03 1.40
4778 4966 9.772973 ATGCATGCTGTTCAAATTATGATAAAT 57.227 25.926 20.33 0.00 38.03 1.40
4779 4967 9.036671 TGCATGCTGTTCAAATTATGATAAATG 57.963 29.630 20.33 0.00 38.03 2.32
4780 4968 8.007716 GCATGCTGTTCAAATTATGATAAATGC 58.992 33.333 11.37 0.00 38.03 3.56
4782 4970 9.772973 ATGCTGTTCAAATTATGATAAATGCAT 57.227 25.926 0.00 0.00 38.03 3.96
4783 4971 9.036671 TGCTGTTCAAATTATGATAAATGCATG 57.963 29.630 0.00 0.00 38.03 4.06
4784 4972 9.037737 GCTGTTCAAATTATGATAAATGCATGT 57.962 29.630 0.00 0.00 38.03 3.21
4820 5008 9.258826 TGATAAATGCACATGGTAATTAATTGC 57.741 29.630 11.05 9.30 0.00 3.56
4824 5012 3.796178 GCACATGGTAATTAATTGCGGTG 59.204 43.478 19.93 19.93 0.00 4.94
4900 5088 2.096819 AGACGAGACGAGCAAGATTCTC 59.903 50.000 0.00 0.00 0.00 2.87
4936 5127 4.855531 ACAATGTGATCATGATTCATGCG 58.144 39.130 19.74 17.45 41.18 4.73
4967 5158 4.431661 TGTCATCTATCGATGCTAGCTG 57.568 45.455 17.23 6.07 45.32 4.24
4970 5161 4.095632 GTCATCTATCGATGCTAGCTGCTA 59.904 45.833 17.23 9.34 45.32 3.49
4972 5163 3.680490 TCTATCGATGCTAGCTGCTACT 58.320 45.455 17.23 0.00 43.37 2.57
4973 5164 3.687212 TCTATCGATGCTAGCTGCTACTC 59.313 47.826 17.23 1.44 43.37 2.59
4974 5165 1.680338 TCGATGCTAGCTGCTACTCA 58.320 50.000 17.23 7.26 43.37 3.41
4975 5166 1.606189 TCGATGCTAGCTGCTACTCAG 59.394 52.381 17.23 0.00 45.62 3.35
4976 5167 1.335780 CGATGCTAGCTGCTACTCAGG 60.336 57.143 17.23 0.00 43.06 3.86
4979 5170 1.323412 GCTAGCTGCTACTCAGGCTA 58.677 55.000 7.70 0.00 43.06 3.93
4981 5172 1.269448 CTAGCTGCTACTCAGGCTAGC 59.731 57.143 6.04 6.04 43.06 3.42
4994 5185 3.192212 TCAGGCTAGCACATATCTCATCG 59.808 47.826 18.24 0.00 0.00 3.84
5000 5191 1.797046 GCACATATCTCATCGGCTGTG 59.203 52.381 0.00 0.00 37.60 3.66
5128 5323 5.939883 CAGGTCACATCCATGTCTTCTTAAA 59.060 40.000 0.00 0.00 39.39 1.52
5196 5391 8.866956 ACATGCTCGTACACTTTATTTACTTAC 58.133 33.333 0.00 0.00 0.00 2.34
5197 5392 9.084164 CATGCTCGTACACTTTATTTACTTACT 57.916 33.333 0.00 0.00 0.00 2.24
5198 5393 9.649167 ATGCTCGTACACTTTATTTACTTACTT 57.351 29.630 0.00 0.00 0.00 2.24
5312 5512 0.452784 GCAACGGCTTCATTCGTGAC 60.453 55.000 0.00 0.00 39.70 3.67
5399 5599 0.530288 TGCCGACGATGATGTTCTCA 59.470 50.000 0.00 0.00 38.53 3.27
5423 5623 2.479730 GCAAAATGATCTGCTGCAGGAG 60.480 50.000 27.83 27.83 35.62 3.69
5472 5672 4.766007 CCATCACGCAATTAATCTTCTCG 58.234 43.478 0.00 0.00 0.00 4.04
5477 5677 6.664515 TCACGCAATTAATCTTCTCGTTTTT 58.335 32.000 0.00 0.00 0.00 1.94
5482 5682 9.113876 CGCAATTAATCTTCTCGTTTTTACTTT 57.886 29.630 0.00 0.00 0.00 2.66
5490 5690 9.892130 ATCTTCTCGTTTTTACTTTATCCATCT 57.108 29.630 0.00 0.00 0.00 2.90
5495 5695 6.943718 TCGTTTTTACTTTATCCATCTGGGTT 59.056 34.615 0.00 0.00 38.11 4.11
5496 5696 7.449086 TCGTTTTTACTTTATCCATCTGGGTTT 59.551 33.333 0.00 0.00 38.11 3.27
5497 5697 8.732531 CGTTTTTACTTTATCCATCTGGGTTTA 58.267 33.333 0.00 0.00 38.11 2.01
5674 5905 2.912956 ACTTGAGCCAAAGTATGAGGGA 59.087 45.455 0.00 0.00 38.62 4.20
5684 5915 6.127338 GCCAAAGTATGAGGGAGCTTTTAATT 60.127 38.462 0.00 0.00 0.00 1.40
5685 5916 7.068226 GCCAAAGTATGAGGGAGCTTTTAATTA 59.932 37.037 0.00 0.00 0.00 1.40
5686 5917 8.406297 CCAAAGTATGAGGGAGCTTTTAATTAC 58.594 37.037 0.00 0.00 0.00 1.89
5715 5950 5.813672 TGGTTTACGTATGTTTAGATGCTCC 59.186 40.000 0.00 0.00 0.00 4.70
5775 6082 9.712305 ATAGCTACATTACTGGATTGTTCATAC 57.288 33.333 0.00 0.00 0.00 2.39
5844 6151 9.932207 ATTTGAACTAATCATTGCTTCAATTGA 57.068 25.926 3.38 3.38 38.03 2.57
5845 6152 9.932207 TTTGAACTAATCATTGCTTCAATTGAT 57.068 25.926 9.40 0.00 38.03 2.57
5846 6153 8.920509 TGAACTAATCATTGCTTCAATTGATG 57.079 30.769 9.40 12.82 31.05 3.07
5867 6174 3.244665 TGTGATGTGATTCAACAGCTCCT 60.245 43.478 0.00 0.00 37.36 3.69
6029 6336 4.452455 ACTGCAAGAATAGTTGTGTGCTAC 59.548 41.667 0.00 0.00 37.43 3.58
6045 6352 8.542497 TGTGTGCTACTTATTTAAGAACGATT 57.458 30.769 4.40 0.00 37.08 3.34
6136 6449 0.995024 ACATTAGCCACAGGGAAGCT 59.005 50.000 0.00 0.00 40.66 3.74
6224 6557 2.101415 GCATTCCTCAGGCAAATTACCC 59.899 50.000 0.00 0.00 0.00 3.69
6225 6558 3.635591 CATTCCTCAGGCAAATTACCCT 58.364 45.455 0.00 0.00 0.00 4.34
6226 6559 4.792068 CATTCCTCAGGCAAATTACCCTA 58.208 43.478 0.00 0.00 0.00 3.53
6227 6560 4.938575 TTCCTCAGGCAAATTACCCTAA 57.061 40.909 0.00 0.00 0.00 2.69
6389 6723 1.135489 TCTGTTCATAGACACGACGGC 60.135 52.381 0.00 0.00 0.00 5.68
6411 6748 3.020984 TGGGAGTCCAAACAAGAACAAC 58.979 45.455 12.30 0.00 40.73 3.32
6662 7006 6.646653 GCTATATCTACTAGTGTGCATGCAAA 59.353 38.462 24.58 15.92 0.00 3.68
6688 7032 5.678955 AATTCCCTAGAGTTCACCACTAC 57.321 43.478 0.00 0.00 35.01 2.73
6751 7099 3.018856 CCATTTCCTCTTACTGCATGCA 58.981 45.455 21.29 21.29 0.00 3.96
6752 7100 3.635373 CCATTTCCTCTTACTGCATGCAT 59.365 43.478 22.97 13.83 0.00 3.96
6769 7117 5.107220 GCATGCATTTCAAAGAGTTTTCCTG 60.107 40.000 14.21 0.00 0.00 3.86
6773 7121 5.525012 GCATTTCAAAGAGTTTTCCTGCTTT 59.475 36.000 0.00 0.00 0.00 3.51
6809 7161 5.668135 AATCCATATGTTCCAGGGATCAA 57.332 39.130 1.24 0.00 37.37 2.57
6861 7214 6.153340 TGAGTTACGGTACCTTGTTAGCTATT 59.847 38.462 10.90 0.00 0.00 1.73
6904 7257 0.671796 TTCGAGCGAGTTGGAGTTGA 59.328 50.000 0.00 0.00 0.00 3.18
6906 7259 1.009389 CGAGCGAGTTGGAGTTGACC 61.009 60.000 0.00 0.00 0.00 4.02
6923 7276 3.877559 TGACCCAGCTCAACTCATATTG 58.122 45.455 0.00 0.00 0.00 1.90
6970 7323 5.403246 GTGAAACTCAAGATCGAGCTCTAA 58.597 41.667 12.85 0.00 36.42 2.10
6981 7334 5.359576 AGATCGAGCTCTAAAACATGACTCT 59.640 40.000 12.85 0.00 0.00 3.24
6982 7335 4.738124 TCGAGCTCTAAAACATGACTCTG 58.262 43.478 12.85 0.00 0.00 3.35
7000 7353 2.028112 TCTGGCTCAGCTTGTAACGATT 60.028 45.455 0.00 0.00 0.00 3.34
7108 7462 3.530265 ACACGACACAACTTTGTAGGA 57.470 42.857 0.00 0.00 39.91 2.94
7151 7505 2.434336 TGGGCGAACTAGCAATAGATGT 59.566 45.455 0.00 0.00 39.27 3.06
7169 7523 3.859411 TGTTGGTCTTTGTGGACAAAC 57.141 42.857 0.70 7.65 45.42 2.93
7196 7550 5.064441 AGAAAACAAAGGTGCATATGCTC 57.936 39.130 27.13 23.05 42.66 4.26
7233 7587 7.762159 GTCCAAAACAACAGGAAATTTAAGACA 59.238 33.333 0.00 0.00 32.30 3.41
7329 7685 4.853924 AAATGGAGAAAAATCACGCACT 57.146 36.364 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 150 8.041829 ACACAGATAGATATATGTACGTCCAC 57.958 38.462 0.00 0.00 36.11 4.02
255 260 3.264193 GGGGCAATCCTCCTTTTGAAAAT 59.736 43.478 0.00 0.00 35.33 1.82
256 261 2.637382 GGGGCAATCCTCCTTTTGAAAA 59.363 45.455 0.00 0.00 35.33 2.29
260 265 0.611896 ACGGGGCAATCCTCCTTTTG 60.612 55.000 0.00 0.00 35.33 2.44
265 270 1.153147 GAAGACGGGGCAATCCTCC 60.153 63.158 0.00 0.00 35.33 4.30
266 271 0.462759 CAGAAGACGGGGCAATCCTC 60.463 60.000 0.00 0.00 35.33 3.71
271 276 1.377202 GATGCAGAAGACGGGGCAA 60.377 57.895 0.00 0.00 40.02 4.52
272 277 1.913951 ATGATGCAGAAGACGGGGCA 61.914 55.000 0.00 0.00 41.00 5.36
273 278 0.749454 AATGATGCAGAAGACGGGGC 60.749 55.000 0.00 0.00 0.00 5.80
279 284 2.279741 GCACCGTAATGATGCAGAAGA 58.720 47.619 0.00 0.00 36.93 2.87
281 286 2.106477 TGCACCGTAATGATGCAGAA 57.894 45.000 0.00 0.00 44.21 3.02
295 305 0.951558 CTAGGTTGGTTGTGTGCACC 59.048 55.000 15.69 6.37 0.00 5.01
296 306 0.951558 CCTAGGTTGGTTGTGTGCAC 59.048 55.000 10.75 10.75 0.00 4.57
297 307 0.821711 GCCTAGGTTGGTTGTGTGCA 60.822 55.000 11.31 0.00 0.00 4.57
298 308 1.524008 GGCCTAGGTTGGTTGTGTGC 61.524 60.000 11.31 0.00 0.00 4.57
300 310 0.553819 TTGGCCTAGGTTGGTTGTGT 59.446 50.000 11.31 0.00 0.00 3.72
301 311 1.202879 TCTTGGCCTAGGTTGGTTGTG 60.203 52.381 14.51 0.00 0.00 3.33
328 339 7.732025 TCGCTCCTGGTTATATATTTTCTTCA 58.268 34.615 0.00 0.00 0.00 3.02
330 341 7.607991 CCATCGCTCCTGGTTATATATTTTCTT 59.392 37.037 0.00 0.00 0.00 2.52
332 343 7.103641 TCCATCGCTCCTGGTTATATATTTTC 58.896 38.462 0.00 0.00 35.19 2.29
378 389 8.556213 AGAAAACCAAAAACTACGCTCATATA 57.444 30.769 0.00 0.00 0.00 0.86
401 412 0.970427 TGCATGTACTCTGCCGGAGA 60.970 55.000 5.05 4.34 44.45 3.71
415 426 3.561503 CAGAATTGTGTGACTGTGCATG 58.438 45.455 0.00 0.00 0.00 4.06
457 468 1.141645 CCGACCGTCGAAAAATCACA 58.858 50.000 22.40 0.00 43.74 3.58
478 490 5.105513 GGGAGAAGTTCTTTCCAACAAAACA 60.106 40.000 6.88 0.00 36.40 2.83
479 491 5.127194 AGGGAGAAGTTCTTTCCAACAAAAC 59.873 40.000 21.05 1.50 36.40 2.43
480 492 5.269189 AGGGAGAAGTTCTTTCCAACAAAA 58.731 37.500 21.05 0.00 36.40 2.44
482 494 4.166144 AGAGGGAGAAGTTCTTTCCAACAA 59.834 41.667 21.05 0.00 36.40 2.83
484 496 4.068599 CAGAGGGAGAAGTTCTTTCCAAC 58.931 47.826 21.05 15.91 36.40 3.77
485 497 3.716872 ACAGAGGGAGAAGTTCTTTCCAA 59.283 43.478 21.05 0.00 36.40 3.53
486 498 3.318313 ACAGAGGGAGAAGTTCTTTCCA 58.682 45.455 21.05 0.00 36.40 3.53
487 499 5.485209 TTACAGAGGGAGAAGTTCTTTCC 57.515 43.478 6.88 11.78 36.40 3.13
488 500 6.205076 GGTTTTACAGAGGGAGAAGTTCTTTC 59.795 42.308 6.88 5.94 35.97 2.62
490 502 5.369993 AGGTTTTACAGAGGGAGAAGTTCTT 59.630 40.000 6.88 0.00 0.00 2.52
492 504 5.230323 AGGTTTTACAGAGGGAGAAGTTC 57.770 43.478 0.00 0.00 0.00 3.01
493 505 5.845065 ACTAGGTTTTACAGAGGGAGAAGTT 59.155 40.000 0.00 0.00 0.00 2.66
494 506 5.246429 CACTAGGTTTTACAGAGGGAGAAGT 59.754 44.000 0.00 0.00 0.00 3.01
495 507 5.246429 ACACTAGGTTTTACAGAGGGAGAAG 59.754 44.000 0.00 0.00 0.00 2.85
496 508 5.011738 CACACTAGGTTTTACAGAGGGAGAA 59.988 44.000 0.00 0.00 0.00 2.87
497 509 4.527038 CACACTAGGTTTTACAGAGGGAGA 59.473 45.833 0.00 0.00 0.00 3.71
498 510 4.822026 CACACTAGGTTTTACAGAGGGAG 58.178 47.826 0.00 0.00 0.00 4.30
499 511 3.007614 GCACACTAGGTTTTACAGAGGGA 59.992 47.826 0.00 0.00 0.00 4.20
500 512 3.335579 GCACACTAGGTTTTACAGAGGG 58.664 50.000 0.00 0.00 0.00 4.30
501 513 2.993899 CGCACACTAGGTTTTACAGAGG 59.006 50.000 0.00 0.00 0.00 3.69
502 514 3.909430 TCGCACACTAGGTTTTACAGAG 58.091 45.455 0.00 0.00 0.00 3.35
546 558 5.277586 CGTTAGTGTGCACTTACCAAATTGA 60.278 40.000 19.41 0.00 42.54 2.57
579 591 4.422073 TCATGCCTATCTACCAACAAGG 57.578 45.455 0.00 0.00 45.67 3.61
581 593 4.411869 TCCATCATGCCTATCTACCAACAA 59.588 41.667 0.00 0.00 0.00 2.83
690 702 1.423921 GAGAGTAGGAGAGGGGGAGAG 59.576 61.905 0.00 0.00 0.00 3.20
721 733 7.401493 AGGTTATATTGATGCTATGGCTCTAGT 59.599 37.037 1.68 0.00 39.59 2.57
724 736 6.413052 CAGGTTATATTGATGCTATGGCTCT 58.587 40.000 1.68 0.00 39.59 4.09
742 788 5.046520 GTCTAGCTTTCCTCTTTCCAGGTTA 60.047 44.000 0.00 0.00 34.76 2.85
805 851 4.349636 AGGTTAGATCGATGGAGAGAGAGA 59.650 45.833 0.54 0.00 0.00 3.10
806 852 4.651778 AGGTTAGATCGATGGAGAGAGAG 58.348 47.826 0.54 0.00 0.00 3.20
807 853 4.715534 AGGTTAGATCGATGGAGAGAGA 57.284 45.455 0.54 0.00 0.00 3.10
808 854 5.180492 GTGTAGGTTAGATCGATGGAGAGAG 59.820 48.000 0.54 0.00 0.00 3.20
835 881 3.676873 GCTGCTTCTCTCTCTTTCTCTGG 60.677 52.174 0.00 0.00 0.00 3.86
864 910 2.365617 GCAGGCTAGCTAGGTTACATGA 59.634 50.000 22.10 0.00 0.00 3.07
927 973 2.029964 GACCACGGCGAGGTTCAA 59.970 61.111 28.93 0.00 40.09 2.69
941 987 2.732619 CCCCCTAGCCGTTCAGACC 61.733 68.421 0.00 0.00 0.00 3.85
992 1038 1.402456 CCGACGACGACATTCTTCCTT 60.402 52.381 9.28 0.00 42.66 3.36
997 1043 2.181021 GCCCGACGACGACATTCT 59.819 61.111 9.28 0.00 42.66 2.40
998 1044 2.884207 GGCCCGACGACGACATTC 60.884 66.667 9.28 0.00 42.66 2.67
999 1045 3.642778 CTGGCCCGACGACGACATT 62.643 63.158 9.28 0.00 42.66 2.71
1425 1471 5.730296 TCCTGACGAATCTCTCTTTTCTT 57.270 39.130 0.00 0.00 0.00 2.52
1441 1487 1.536284 GGTCAACCGATCGATCCTGAC 60.536 57.143 26.62 26.62 0.00 3.51
1444 1490 1.191535 TTGGTCAACCGATCGATCCT 58.808 50.000 18.66 2.07 39.43 3.24
1447 1493 4.380444 CCAAAAATTGGTCAACCGATCGAT 60.380 41.667 18.66 0.00 45.93 3.59
1448 1494 3.057876 CCAAAAATTGGTCAACCGATCGA 60.058 43.478 18.66 0.00 45.93 3.59
1449 1495 3.241701 CCAAAAATTGGTCAACCGATCG 58.758 45.455 8.51 8.51 45.93 3.69
1471 1519 8.634444 ACTTATAGCTCTACAACATTAGACAGG 58.366 37.037 0.00 0.00 0.00 4.00
1473 1521 9.409918 AGACTTATAGCTCTACAACATTAGACA 57.590 33.333 0.00 0.00 0.00 3.41
1567 1615 3.835395 ACACAAAAAGGAAGAACCCACAA 59.165 39.130 0.00 0.00 40.05 3.33
1570 1618 3.835395 ACAACACAAAAAGGAAGAACCCA 59.165 39.130 0.00 0.00 40.05 4.51
1571 1619 4.465632 ACAACACAAAAAGGAAGAACCC 57.534 40.909 0.00 0.00 40.05 4.11
1572 1620 4.092821 GCAACAACACAAAAAGGAAGAACC 59.907 41.667 0.00 0.00 39.35 3.62
1573 1621 4.092821 GGCAACAACACAAAAAGGAAGAAC 59.907 41.667 0.00 0.00 0.00 3.01
1574 1622 4.249661 GGCAACAACACAAAAAGGAAGAA 58.750 39.130 0.00 0.00 0.00 2.52
1610 1658 9.936759 TTGTTCTTTTGGTTTTCTTTAGACAAT 57.063 25.926 0.00 0.00 0.00 2.71
1620 1668 8.887036 ATAGGATTGTTGTTCTTTTGGTTTTC 57.113 30.769 0.00 0.00 0.00 2.29
1632 1680 9.533253 CTGTTTTCTTTTGATAGGATTGTTGTT 57.467 29.630 0.00 0.00 0.00 2.83
1647 1695 5.822519 GGGAAAATGCTTCCTGTTTTCTTTT 59.177 36.000 3.48 0.00 40.14 2.27
1668 1716 6.157536 TGAGATCATAATTAAGGAAGGGGGA 58.842 40.000 0.00 0.00 0.00 4.81
1706 1756 8.862550 AATGTTCTTTTAGCTGAAACTGAAAG 57.137 30.769 0.00 3.22 41.93 2.62
1841 1892 3.087031 ACAAGGAGAATGCATGAGGTTG 58.913 45.455 0.00 3.82 0.00 3.77
1869 1920 4.707030 TCAAATCCAGTGATTCACATGC 57.293 40.909 18.57 0.00 40.34 4.06
1906 1957 6.925718 TCTTTATGTTGAGACACTGTTCTCTG 59.074 38.462 15.79 0.00 42.36 3.35
1966 2021 8.040716 ACTAGTATTTGATAACTTTGGCACAC 57.959 34.615 0.00 0.00 39.29 3.82
1993 2048 5.277490 GCACATGCATGGTGTACAATACTAG 60.277 44.000 29.41 0.00 41.59 2.57
1996 2051 3.489059 GGCACATGCATGGTGTACAATAC 60.489 47.826 29.41 10.63 44.36 1.89
1997 2052 2.687425 GGCACATGCATGGTGTACAATA 59.313 45.455 29.41 0.00 44.36 1.90
1998 2053 1.477700 GGCACATGCATGGTGTACAAT 59.522 47.619 29.41 3.93 44.36 2.71
2328 2383 3.060272 CACTTAGCTTGAACGTGACACAG 60.060 47.826 6.37 1.26 0.00 3.66
2333 2388 2.101750 TGGTCACTTAGCTTGAACGTGA 59.898 45.455 0.00 0.00 32.96 4.35
2460 2518 3.563808 CACGAGAAAGGATTCCAAACACA 59.436 43.478 5.29 0.00 36.12 3.72
2806 2864 8.171337 ACTTTCTTTTACCCCTACCTGAATAT 57.829 34.615 0.00 0.00 0.00 1.28
2840 2898 4.823790 ACACACGAGGACCAAAATAAAC 57.176 40.909 0.00 0.00 0.00 2.01
2874 2932 3.438087 CGCTTTGAGTTCATGGTTCTCAT 59.562 43.478 13.14 0.00 37.91 2.90
2878 2936 3.896648 TTCGCTTTGAGTTCATGGTTC 57.103 42.857 0.00 0.00 0.00 3.62
2945 3003 4.156556 ACGAATTAAGCAAGCATGATGTGT 59.843 37.500 0.00 0.00 0.00 3.72
3074 3132 2.435805 TCATTGACTATCCCTGGTGCTC 59.564 50.000 0.00 0.00 0.00 4.26
3075 3133 2.437281 CTCATTGACTATCCCTGGTGCT 59.563 50.000 0.00 0.00 0.00 4.40
3414 3543 5.063204 TGCCGATTAATGATAAGGTGGAAG 58.937 41.667 0.00 0.00 0.00 3.46
3434 3563 4.794169 TCTTCATTAGCGTTTTTCTTGCC 58.206 39.130 0.00 0.00 0.00 4.52
3446 3575 5.962423 GCGAGTTCATCTTTTCTTCATTAGC 59.038 40.000 0.00 0.00 0.00 3.09
3624 3754 8.451748 GGGAGTAGTAGTTTTGAAAATAGCTTG 58.548 37.037 0.00 0.00 0.00 4.01
3648 3778 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3649 3779 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3650 3780 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
3651 3781 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
3652 3782 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
3653 3783 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
3654 3784 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
3655 3785 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
3656 3786 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
3657 3787 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
3658 3788 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
3659 3789 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
3660 3790 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
3661 3791 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
3662 3792 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
3663 3793 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
3664 3794 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
3665 3795 4.985044 ATTGAACTAAAACCACGACGAG 57.015 40.909 0.00 0.00 0.00 4.18
3666 3796 5.531634 AGTATTGAACTAAAACCACGACGA 58.468 37.500 0.00 0.00 36.36 4.20
3667 3797 5.834239 AGTATTGAACTAAAACCACGACG 57.166 39.130 0.00 0.00 36.36 5.12
3684 3814 6.045072 TCACGGGTTTATCTCACAAGTATT 57.955 37.500 0.00 0.00 0.00 1.89
3685 3815 5.670792 TCACGGGTTTATCTCACAAGTAT 57.329 39.130 0.00 0.00 0.00 2.12
3686 3816 5.186215 TCATCACGGGTTTATCTCACAAGTA 59.814 40.000 0.00 0.00 0.00 2.24
3687 3817 4.020573 TCATCACGGGTTTATCTCACAAGT 60.021 41.667 0.00 0.00 0.00 3.16
3688 3818 4.503910 TCATCACGGGTTTATCTCACAAG 58.496 43.478 0.00 0.00 0.00 3.16
3689 3819 4.545208 TCATCACGGGTTTATCTCACAA 57.455 40.909 0.00 0.00 0.00 3.33
3704 3834 1.017387 GTGCCCTCCGATTTCATCAC 58.983 55.000 0.00 0.00 0.00 3.06
3705 3835 0.107214 GGTGCCCTCCGATTTCATCA 60.107 55.000 0.00 0.00 0.00 3.07
3712 3842 1.305802 TACAGTGGTGCCCTCCGAT 60.306 57.895 0.00 0.00 0.00 4.18
3721 3851 7.596621 CAGATATGTATACAAGCTACAGTGGTG 59.403 40.741 10.14 0.00 32.91 4.17
3807 3937 0.689055 TGACACTTCATGCAGAGGCT 59.311 50.000 0.00 0.00 41.91 4.58
3908 4040 3.073678 CCAGCTAAATTGTTTTTGGGGC 58.926 45.455 0.00 0.00 0.00 5.80
3958 4090 3.921119 ATGGTAAACAGTGCATGTGTG 57.079 42.857 5.50 0.00 43.00 3.82
4025 4157 0.321387 AGCTCTCTGCCACACACATG 60.321 55.000 0.00 0.00 44.23 3.21
4026 4158 1.269958 TAGCTCTCTGCCACACACAT 58.730 50.000 0.00 0.00 44.23 3.21
4060 4227 4.458989 ACACAAGACGGATTAATTGCATGT 59.541 37.500 0.00 0.00 0.00 3.21
4085 4252 7.379797 CGCTCACACCTATACATATACATATGC 59.620 40.741 1.58 0.00 42.98 3.14
4233 4409 0.955428 TGGCTGATCACTTTCGTGCC 60.955 55.000 11.84 11.84 40.99 5.01
4302 4478 7.328277 TGTATTGGATACCCATTTTCTTTCG 57.672 36.000 0.00 0.00 43.12 3.46
4400 4587 4.526970 TGCTTTCTTTCCTCTCACTTTGT 58.473 39.130 0.00 0.00 0.00 2.83
4411 4598 1.688735 AGCCCTTGTTGCTTTCTTTCC 59.311 47.619 0.00 0.00 34.87 3.13
4412 4599 3.459232 AAGCCCTTGTTGCTTTCTTTC 57.541 42.857 0.00 0.00 46.47 2.62
4425 4612 0.466189 CAGGTGTGTGTGAAGCCCTT 60.466 55.000 0.00 0.00 0.00 3.95
4435 4622 3.131709 AGATTTCAGACCAGGTGTGTG 57.868 47.619 16.22 1.93 39.54 3.82
4501 4688 0.540365 AAAGACAGGTGCATGGTGGG 60.540 55.000 0.00 0.00 0.00 4.61
4504 4691 1.069049 GCAAAAAGACAGGTGCATGGT 59.931 47.619 0.00 0.00 36.97 3.55
4513 4700 4.935702 TGTTGATCCAAGCAAAAAGACAG 58.064 39.130 0.00 0.00 0.00 3.51
4537 4725 4.051922 CCATACGTTAGAATCCAGAGCAC 58.948 47.826 0.00 0.00 0.00 4.40
4554 4742 2.218603 CCAATGGCTAACCGACCATAC 58.781 52.381 0.00 0.00 46.04 2.39
4560 4748 4.850680 AGAATTAACCAATGGCTAACCGA 58.149 39.130 0.00 0.00 39.70 4.69
4561 4749 5.339990 CAAGAATTAACCAATGGCTAACCG 58.660 41.667 0.00 0.00 39.70 4.44
4562 4750 5.395214 CCCAAGAATTAACCAATGGCTAACC 60.395 44.000 0.00 0.00 0.00 2.85
4563 4751 5.420739 TCCCAAGAATTAACCAATGGCTAAC 59.579 40.000 0.00 0.00 0.00 2.34
4570 4758 6.558394 CCCCAATATCCCAAGAATTAACCAAT 59.442 38.462 0.00 0.00 0.00 3.16
4586 4774 0.814457 TGCGCACAAACCCCAATATC 59.186 50.000 5.66 0.00 0.00 1.63
4594 4782 2.186826 ACTCACCTGCGCACAAACC 61.187 57.895 5.66 0.00 0.00 3.27
4595 4783 1.009675 CACTCACCTGCGCACAAAC 60.010 57.895 5.66 0.00 0.00 2.93
4602 4790 2.047844 CAGGGACACTCACCTGCG 60.048 66.667 0.00 0.00 46.78 5.18
4654 4842 1.599518 TAGGTTTGTGCAGTGCCCG 60.600 57.895 13.72 0.00 0.00 6.13
4720 4908 2.358737 CGAACCTGGACCTGTGCC 60.359 66.667 0.00 0.00 0.00 5.01
4752 4940 9.772973 ATTTATCATAATTTGAACAGCATGCAT 57.227 25.926 21.98 4.26 36.14 3.96
4753 4941 9.036671 CATTTATCATAATTTGAACAGCATGCA 57.963 29.630 21.98 0.00 36.14 3.96
4754 4942 8.007716 GCATTTATCATAATTTGAACAGCATGC 58.992 33.333 10.51 10.51 36.14 4.06
4757 4945 9.036671 CATGCATTTATCATAATTTGAACAGCA 57.963 29.630 0.00 0.00 38.03 4.41
4758 4946 9.037737 ACATGCATTTATCATAATTTGAACAGC 57.962 29.630 0.00 0.00 38.03 4.40
4779 4967 6.094464 TGCATTTATCAGGATGCTATACATGC 59.906 38.462 17.67 17.67 46.68 4.06
4780 4968 7.120138 TGTGCATTTATCAGGATGCTATACATG 59.880 37.037 9.39 0.00 46.68 3.21
4782 4970 6.532826 TGTGCATTTATCAGGATGCTATACA 58.467 36.000 9.39 3.58 46.68 2.29
4783 4971 7.414873 CCATGTGCATTTATCAGGATGCTATAC 60.415 40.741 9.39 1.28 46.68 1.47
4784 4972 6.600427 CCATGTGCATTTATCAGGATGCTATA 59.400 38.462 9.39 0.00 46.68 1.31
4785 4973 5.417894 CCATGTGCATTTATCAGGATGCTAT 59.582 40.000 9.39 2.49 46.68 2.97
4786 4974 4.763279 CCATGTGCATTTATCAGGATGCTA 59.237 41.667 9.39 0.45 46.68 3.49
4787 4975 3.572682 CCATGTGCATTTATCAGGATGCT 59.427 43.478 9.39 0.00 46.68 3.79
4788 4976 3.319972 ACCATGTGCATTTATCAGGATGC 59.680 43.478 0.00 1.60 46.73 3.91
4789 4977 6.638096 TTACCATGTGCATTTATCAGGATG 57.362 37.500 0.00 0.00 37.54 3.51
4790 4978 7.844493 AATTACCATGTGCATTTATCAGGAT 57.156 32.000 0.00 0.00 0.00 3.24
4791 4979 8.759481 TTAATTACCATGTGCATTTATCAGGA 57.241 30.769 0.00 0.00 0.00 3.86
4792 4980 9.985730 AATTAATTACCATGTGCATTTATCAGG 57.014 29.630 0.00 0.00 0.00 3.86
4794 4982 9.258826 GCAATTAATTACCATGTGCATTTATCA 57.741 29.630 0.00 0.00 0.00 2.15
4795 4983 8.427012 CGCAATTAATTACCATGTGCATTTATC 58.573 33.333 0.00 0.00 0.00 1.75
4824 5012 5.465390 ATCATAATTTGAACAGCATGCATGC 59.535 36.000 38.60 38.60 45.32 4.06
4848 5036 3.828451 TCATCGACCTGCATGATCTATCA 59.172 43.478 0.00 0.00 41.70 2.15
4900 5088 4.421058 TCACATTGTACTACTAGCTTGCG 58.579 43.478 0.00 0.00 0.00 4.85
4902 5090 7.922811 TCATGATCACATTGTACTACTAGCTTG 59.077 37.037 0.00 0.00 34.15 4.01
4967 5158 3.509575 AGATATGTGCTAGCCTGAGTAGC 59.490 47.826 13.29 1.37 42.84 3.58
4970 5161 3.570540 TGAGATATGTGCTAGCCTGAGT 58.429 45.455 13.29 0.00 0.00 3.41
4972 5163 3.192212 CGATGAGATATGTGCTAGCCTGA 59.808 47.826 13.29 0.00 0.00 3.86
4973 5164 3.509740 CGATGAGATATGTGCTAGCCTG 58.490 50.000 13.29 0.00 0.00 4.85
4974 5165 2.495270 CCGATGAGATATGTGCTAGCCT 59.505 50.000 13.29 0.00 0.00 4.58
4975 5166 2.886081 CCGATGAGATATGTGCTAGCC 58.114 52.381 13.29 4.15 0.00 3.93
4976 5167 2.094286 AGCCGATGAGATATGTGCTAGC 60.094 50.000 8.10 8.10 0.00 3.42
4979 5170 1.690893 ACAGCCGATGAGATATGTGCT 59.309 47.619 0.00 0.00 0.00 4.40
4981 5172 3.055591 GTCACAGCCGATGAGATATGTG 58.944 50.000 0.00 0.00 39.44 3.21
4994 5185 1.281899 GCTGATTAGTCGTCACAGCC 58.718 55.000 0.00 0.00 45.19 4.85
5000 5191 3.994392 TCCTGTTTTGCTGATTAGTCGTC 59.006 43.478 0.00 0.00 0.00 4.20
5051 5246 7.549488 TCCTGCTACAGAAAAGTTATTAAGAGC 59.451 37.037 0.00 0.00 32.44 4.09
5081 5276 2.936993 GCATGCACTACTGTGTAGCCTT 60.937 50.000 14.21 0.00 45.44 4.35
5144 5339 9.643693 TGCATGTTGTGATGTATGATACTATAG 57.356 33.333 4.03 0.00 0.00 1.31
5147 5342 7.271511 TGTGCATGTTGTGATGTATGATACTA 58.728 34.615 4.03 0.00 0.00 1.82
5148 5343 6.114767 TGTGCATGTTGTGATGTATGATACT 58.885 36.000 4.03 0.00 0.00 2.12
5149 5344 6.362210 TGTGCATGTTGTGATGTATGATAC 57.638 37.500 0.00 0.00 0.00 2.24
5150 5345 6.513720 GCATGTGCATGTTGTGATGTATGATA 60.514 38.462 12.96 0.00 40.80 2.15
5151 5346 5.735070 GCATGTGCATGTTGTGATGTATGAT 60.735 40.000 12.96 0.00 40.80 2.45
5152 5347 4.439016 GCATGTGCATGTTGTGATGTATGA 60.439 41.667 12.96 0.00 40.80 2.15
5245 5445 6.358974 TCTCCTACATGTGTCATTGAGAAA 57.641 37.500 9.11 0.00 0.00 2.52
5247 5447 4.142071 GCTCTCCTACATGTGTCATTGAGA 60.142 45.833 9.11 9.11 0.00 3.27
5248 5448 4.118410 GCTCTCCTACATGTGTCATTGAG 58.882 47.826 9.11 9.35 0.00 3.02
5249 5449 3.515104 TGCTCTCCTACATGTGTCATTGA 59.485 43.478 9.11 0.00 0.00 2.57
5252 5452 2.158986 GCTGCTCTCCTACATGTGTCAT 60.159 50.000 9.11 0.00 0.00 3.06
5253 5453 1.205655 GCTGCTCTCCTACATGTGTCA 59.794 52.381 9.11 0.00 0.00 3.58
5254 5454 1.472376 GGCTGCTCTCCTACATGTGTC 60.472 57.143 9.11 0.00 0.00 3.67
5255 5455 0.539051 GGCTGCTCTCCTACATGTGT 59.461 55.000 9.11 0.00 0.00 3.72
5256 5456 0.829333 AGGCTGCTCTCCTACATGTG 59.171 55.000 9.11 0.00 30.79 3.21
5323 5523 2.561569 CAAACTCCGGGCTATTGTAGG 58.438 52.381 0.00 0.00 0.00 3.18
5399 5599 1.746787 TGCAGCAGATCATTTTGCGAT 59.253 42.857 0.00 0.00 44.80 4.58
5450 5650 4.271049 ACGAGAAGATTAATTGCGTGATGG 59.729 41.667 0.00 0.00 0.00 3.51
5482 5682 8.437575 GGACTTCTAATTAAACCCAGATGGATA 58.562 37.037 0.00 0.00 37.39 2.59
5490 5690 5.788533 TGAGAGGGACTTCTAATTAAACCCA 59.211 40.000 0.00 0.00 41.55 4.51
5497 5697 8.001292 CCCAAATTATGAGAGGGACTTCTAATT 58.999 37.037 0.00 0.00 41.55 1.40
5498 5698 7.129504 ACCCAAATTATGAGAGGGACTTCTAAT 59.870 37.037 2.29 0.00 41.55 1.73
5634 5865 8.915654 GCTCAAGTTTTGACCATAATTAAACTG 58.084 33.333 0.00 0.00 38.60 3.16
5638 5869 7.531857 TGGCTCAAGTTTTGACCATAATTAA 57.468 32.000 8.20 0.00 36.56 1.40
5639 5870 7.531857 TTGGCTCAAGTTTTGACCATAATTA 57.468 32.000 11.27 0.00 39.15 1.40
5640 5871 6.418057 TTGGCTCAAGTTTTGACCATAATT 57.582 33.333 11.27 0.00 39.15 1.40
5641 5872 6.041979 ACTTTGGCTCAAGTTTTGACCATAAT 59.958 34.615 11.27 0.00 39.15 1.28
5674 5905 9.276590 ACGTAAACCAACTAGTAATTAAAAGCT 57.723 29.630 0.00 0.00 0.00 3.74
5685 5916 9.362539 CATCTAAACATACGTAAACCAACTAGT 57.637 33.333 0.00 0.00 0.00 2.57
5686 5917 8.325997 GCATCTAAACATACGTAAACCAACTAG 58.674 37.037 0.00 0.00 0.00 2.57
5775 6082 4.708177 ACCTATTCCATTCCATCAACTCG 58.292 43.478 0.00 0.00 0.00 4.18
5842 6149 4.329392 AGCTGTTGAATCACATCACATCA 58.671 39.130 0.00 0.00 0.00 3.07
5843 6150 4.201891 GGAGCTGTTGAATCACATCACATC 60.202 45.833 0.00 0.00 0.00 3.06
5844 6151 3.693085 GGAGCTGTTGAATCACATCACAT 59.307 43.478 0.00 0.00 0.00 3.21
5845 6152 3.076621 GGAGCTGTTGAATCACATCACA 58.923 45.455 0.00 0.00 0.00 3.58
5846 6153 3.126514 CAGGAGCTGTTGAATCACATCAC 59.873 47.826 0.00 0.00 0.00 3.06
5867 6174 0.319900 GAACACGCTGCCTCTTCTCA 60.320 55.000 0.00 0.00 0.00 3.27
6136 6449 1.100463 TCTTTGCGGCAGTGCTGAAA 61.100 50.000 28.23 21.24 37.02 2.69
6190 6503 6.486657 GCCTGAGGAATGCATACATTTTAGTA 59.513 38.462 0.65 0.00 46.59 1.82
6274 6608 3.433306 AGACCGAAATGGATGTTTGGA 57.567 42.857 0.00 0.00 42.00 3.53
6389 6723 2.930950 TGTTCTTGTTTGGACTCCCAG 58.069 47.619 0.00 0.00 44.60 4.45
6537 6877 8.948631 ATTATTTATTCACTCGATCGCCATAT 57.051 30.769 11.09 2.78 0.00 1.78
6538 6878 8.771920 AATTATTTATTCACTCGATCGCCATA 57.228 30.769 11.09 0.00 0.00 2.74
6539 6879 7.672983 AATTATTTATTCACTCGATCGCCAT 57.327 32.000 11.09 0.15 0.00 4.40
6611 6951 6.084326 ACCTTGAATTGCGAGTACAAAAAT 57.916 33.333 0.00 0.00 32.27 1.82
6662 7006 7.272144 AGTGGTGAACTCTAGGGAATTAATT 57.728 36.000 0.00 0.00 31.64 1.40
6688 7032 2.362397 TCTAGCTAATGAACTCAGCCCG 59.638 50.000 0.00 0.00 35.88 6.13
6784 7132 6.442961 TGATCCCTGGAACATATGGATTTTT 58.557 36.000 7.80 0.00 39.90 1.94
6785 7133 6.029492 TGATCCCTGGAACATATGGATTTT 57.971 37.500 7.80 0.00 39.90 1.82
6818 7171 2.486592 CTCAGCACATCACATTTCAGCA 59.513 45.455 0.00 0.00 0.00 4.41
6861 7214 1.003839 CTCGTTTGCAGCCCTACCA 60.004 57.895 0.00 0.00 0.00 3.25
6904 7257 4.574674 TTCAATATGAGTTGAGCTGGGT 57.425 40.909 0.00 0.00 39.13 4.51
6906 7259 6.037500 TCGAATTTCAATATGAGTTGAGCTGG 59.962 38.462 0.00 0.00 39.13 4.85
6923 7276 2.413453 AGTTTGAGCTCGCTCGAATTTC 59.587 45.455 20.94 10.97 45.11 2.17
6970 7323 1.350351 AGCTGAGCCAGAGTCATGTTT 59.650 47.619 0.00 0.00 32.44 2.83
6981 7334 2.472695 AATCGTTACAAGCTGAGCCA 57.527 45.000 0.00 0.00 0.00 4.75
6982 7335 2.222819 CGAAATCGTTACAAGCTGAGCC 60.223 50.000 0.00 0.00 34.11 4.70
7151 7505 3.574396 TGTTGTTTGTCCACAAAGACCAA 59.426 39.130 5.09 4.29 45.36 3.67
7169 7523 6.564499 GCATATGCACCTTTGTTTTCTTGTTG 60.564 38.462 22.84 0.00 41.59 3.33
7233 7587 5.779529 AATTATGGTACGTGGTCGACTAT 57.220 39.130 16.46 0.00 40.62 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.