Multiple sequence alignment - TraesCS5B01G024600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G024600 chr5B 100.000 4549 0 0 1 4549 23428461 23423913 0.000000e+00 8401.0
1 TraesCS5B01G024600 chr5B 94.000 50 3 0 585 634 613151134 613151183 4.880000e-10 76.8
2 TraesCS5B01G024600 chr5D 95.973 2856 81 17 1180 4025 30956070 30953239 0.000000e+00 4606.0
3 TraesCS5B01G024600 chr5D 88.927 578 58 4 3974 4549 30953236 30952663 0.000000e+00 708.0
4 TraesCS5B01G024600 chr5D 90.654 428 18 4 686 1097 30956552 30956131 2.390000e-152 549.0
5 TraesCS5B01G024600 chr1D 96.000 50 1 1 589 637 452649755 452649804 3.770000e-11 80.5
6 TraesCS5B01G024600 chr2A 94.118 51 3 0 584 634 761175411 761175461 1.360000e-10 78.7
7 TraesCS5B01G024600 chr5A 90.164 61 2 2 578 634 708131468 708131528 4.880000e-10 76.8
8 TraesCS5B01G024600 chr6B 95.652 46 2 0 589 634 697570140 697570185 1.760000e-09 75.0
9 TraesCS5B01G024600 chr6B 95.652 46 2 0 589 634 697594160 697594205 1.760000e-09 75.0
10 TraesCS5B01G024600 chr6B 92.157 51 4 0 584 634 63610489 63610539 6.310000e-09 73.1
11 TraesCS5B01G024600 chr6A 89.062 64 2 3 578 636 683174 683237 1.760000e-09 75.0
12 TraesCS5B01G024600 chr7D 78.761 113 20 3 3060 3170 171746927 171747037 6.310000e-09 73.1
13 TraesCS5B01G024600 chr3D 93.750 48 3 0 589 636 6993370 6993323 6.310000e-09 73.1
14 TraesCS5B01G024600 chr7B 77.876 113 21 4 3060 3170 138128774 138128884 2.940000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G024600 chr5B 23423913 23428461 4548 True 8401.000000 8401 100.000000 1 4549 1 chr5B.!!$R1 4548
1 TraesCS5B01G024600 chr5D 30952663 30956552 3889 True 1954.333333 4606 91.851333 686 4549 3 chr5D.!!$R1 3863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 484 0.040058 TTTGTCCTGGGCATGATGCT 59.960 50.0 17.84 0.00 44.28 3.79 F
509 510 0.169009 GGCATGGACGCTTCAGAAAC 59.831 55.0 0.00 0.00 0.00 2.78 F
510 511 0.179215 GCATGGACGCTTCAGAAACG 60.179 55.0 4.37 4.37 0.00 3.60 F
1160 1194 0.317160 TGTCATCTCGCGTTTGGTCT 59.683 50.0 5.77 0.00 0.00 3.85 F
2570 2608 0.107214 TCGGGATGATCCTTGCCAAC 60.107 55.0 11.87 0.00 36.57 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 1621 0.105862 CCATGTCCATGAAGCCCCAT 60.106 55.000 8.82 0.0 41.2 4.00 R
2123 2161 1.153549 GTGGAAGTAGGAGCTGGCG 60.154 63.158 0.00 0.0 0.0 5.69 R
2570 2608 4.812476 TTGCCGTCCATCTCGCCG 62.812 66.667 0.00 0.0 0.0 6.46 R
2720 2758 0.684535 TGGATGGCGAGTTCTTGACA 59.315 50.000 0.00 0.0 0.0 3.58 R
3891 3935 0.039035 CCCCTCCCGTGGAATTTTGA 59.961 55.000 0.00 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 7.680442 TTTTTGATTCATAGGACATTCGACA 57.320 32.000 0.00 0.00 0.00 4.35
109 110 7.864108 TTTTGATTCATAGGACATTCGACAT 57.136 32.000 0.00 0.00 0.00 3.06
110 111 6.849588 TTGATTCATAGGACATTCGACATG 57.150 37.500 0.00 0.00 0.00 3.21
111 112 5.917462 TGATTCATAGGACATTCGACATGT 58.083 37.500 0.00 0.00 34.52 3.21
112 113 5.985530 TGATTCATAGGACATTCGACATGTC 59.014 40.000 22.10 22.10 45.59 3.06
122 123 7.801547 GACATTCGACATGTCATCAAAAATT 57.198 32.000 24.93 0.29 45.61 1.82
123 124 8.231304 GACATTCGACATGTCATCAAAAATTT 57.769 30.769 24.93 7.73 45.61 1.82
124 125 8.009984 ACATTCGACATGTCATCAAAAATTTG 57.990 30.769 24.93 11.00 39.48 2.32
140 141 9.311916 TCAAAAATTTGAAACATGATTTCGAGT 57.688 25.926 6.13 0.43 43.62 4.18
141 142 9.360514 CAAAAATTTGAAACATGATTTCGAGTG 57.639 29.630 0.00 0.00 40.55 3.51
142 143 8.870160 AAAATTTGAAACATGATTTCGAGTGA 57.130 26.923 0.00 0.00 0.00 3.41
143 144 8.870160 AAATTTGAAACATGATTTCGAGTGAA 57.130 26.923 0.00 0.00 0.00 3.18
144 145 9.480053 AAATTTGAAACATGATTTCGAGTGAAT 57.520 25.926 0.00 1.58 33.20 2.57
146 147 9.778993 ATTTGAAACATGATTTCGAGTGAATAG 57.221 29.630 0.00 0.00 33.20 1.73
147 148 8.546597 TTGAAACATGATTTCGAGTGAATAGA 57.453 30.769 0.00 0.00 33.20 1.98
148 149 8.546597 TGAAACATGATTTCGAGTGAATAGAA 57.453 30.769 0.00 0.00 33.20 2.10
149 150 8.443160 TGAAACATGATTTCGAGTGAATAGAAC 58.557 33.333 0.00 0.00 33.20 3.01
150 151 8.553459 AAACATGATTTCGAGTGAATAGAACT 57.447 30.769 0.00 0.00 33.20 3.01
151 152 8.553459 AACATGATTTCGAGTGAATAGAACTT 57.447 30.769 0.00 0.00 33.20 2.66
152 153 8.190888 ACATGATTTCGAGTGAATAGAACTTC 57.809 34.615 0.00 0.00 33.20 3.01
153 154 7.819415 ACATGATTTCGAGTGAATAGAACTTCA 59.181 33.333 0.00 0.00 33.20 3.02
154 155 8.824781 CATGATTTCGAGTGAATAGAACTTCAT 58.175 33.333 0.00 0.00 37.47 2.57
155 156 8.189709 TGATTTCGAGTGAATAGAACTTCATG 57.810 34.615 0.00 0.00 37.47 3.07
156 157 7.819415 TGATTTCGAGTGAATAGAACTTCATGT 59.181 33.333 0.00 0.00 37.47 3.21
157 158 9.302345 GATTTCGAGTGAATAGAACTTCATGTA 57.698 33.333 0.00 0.00 37.47 2.29
158 159 9.653287 ATTTCGAGTGAATAGAACTTCATGTAA 57.347 29.630 0.00 0.00 37.47 2.41
159 160 9.483916 TTTCGAGTGAATAGAACTTCATGTAAA 57.516 29.630 0.00 0.00 37.47 2.01
160 161 8.462143 TCGAGTGAATAGAACTTCATGTAAAC 57.538 34.615 0.00 0.00 37.47 2.01
161 162 8.304596 TCGAGTGAATAGAACTTCATGTAAACT 58.695 33.333 0.00 0.00 37.47 2.66
162 163 9.569167 CGAGTGAATAGAACTTCATGTAAACTA 57.431 33.333 0.00 0.00 37.47 2.24
164 165 9.877178 AGTGAATAGAACTTCATGTAAACTAGG 57.123 33.333 0.00 0.00 37.47 3.02
165 166 9.654663 GTGAATAGAACTTCATGTAAACTAGGT 57.345 33.333 0.00 0.00 37.47 3.08
168 169 9.819267 AATAGAACTTCATGTAAACTAGGTAGC 57.181 33.333 0.00 0.00 0.00 3.58
169 170 7.241042 AGAACTTCATGTAAACTAGGTAGCA 57.759 36.000 0.00 0.00 0.00 3.49
170 171 7.852263 AGAACTTCATGTAAACTAGGTAGCAT 58.148 34.615 0.00 0.00 0.00 3.79
171 172 8.978472 AGAACTTCATGTAAACTAGGTAGCATA 58.022 33.333 0.00 0.00 0.00 3.14
172 173 9.765795 GAACTTCATGTAAACTAGGTAGCATAT 57.234 33.333 0.00 0.00 0.00 1.78
173 174 9.547753 AACTTCATGTAAACTAGGTAGCATATG 57.452 33.333 0.00 0.00 0.00 1.78
174 175 8.924303 ACTTCATGTAAACTAGGTAGCATATGA 58.076 33.333 6.97 0.00 0.00 2.15
175 176 9.764363 CTTCATGTAAACTAGGTAGCATATGAA 57.236 33.333 6.97 2.40 0.00 2.57
177 178 9.764363 TCATGTAAACTAGGTAGCATATGAAAG 57.236 33.333 6.97 0.00 0.00 2.62
178 179 9.547753 CATGTAAACTAGGTAGCATATGAAAGT 57.452 33.333 6.97 0.00 0.00 2.66
180 181 9.953565 TGTAAACTAGGTAGCATATGAAAGTTT 57.046 29.630 6.97 12.83 38.86 2.66
215 216 9.528489 TTTTTGGACTATTGATTACTTAGCCTT 57.472 29.630 0.00 0.00 0.00 4.35
216 217 9.528489 TTTTGGACTATTGATTACTTAGCCTTT 57.472 29.630 0.00 0.00 0.00 3.11
217 218 9.528489 TTTGGACTATTGATTACTTAGCCTTTT 57.472 29.630 0.00 0.00 0.00 2.27
218 219 8.732746 TGGACTATTGATTACTTAGCCTTTTC 57.267 34.615 0.00 0.00 0.00 2.29
219 220 8.325787 TGGACTATTGATTACTTAGCCTTTTCA 58.674 33.333 0.00 0.00 0.00 2.69
220 221 9.343539 GGACTATTGATTACTTAGCCTTTTCAT 57.656 33.333 0.00 0.00 0.00 2.57
250 251 5.659440 TTTTTGGAATCCAGCACCTATTC 57.341 39.130 0.86 0.00 33.81 1.75
251 252 4.591321 TTTGGAATCCAGCACCTATTCT 57.409 40.909 0.86 0.00 33.81 2.40
252 253 3.565764 TGGAATCCAGCACCTATTCTG 57.434 47.619 0.00 0.00 31.66 3.02
253 254 3.114606 TGGAATCCAGCACCTATTCTGA 58.885 45.455 0.00 0.00 32.26 3.27
254 255 3.523157 TGGAATCCAGCACCTATTCTGAA 59.477 43.478 0.00 0.00 32.26 3.02
255 256 4.018506 TGGAATCCAGCACCTATTCTGAAA 60.019 41.667 0.00 0.00 32.26 2.69
256 257 4.949856 GGAATCCAGCACCTATTCTGAAAA 59.050 41.667 0.00 0.00 32.26 2.29
257 258 5.418840 GGAATCCAGCACCTATTCTGAAAAA 59.581 40.000 0.00 0.00 32.26 1.94
258 259 6.097412 GGAATCCAGCACCTATTCTGAAAAAT 59.903 38.462 0.00 0.00 32.26 1.82
259 260 5.902613 TCCAGCACCTATTCTGAAAAATG 57.097 39.130 0.00 0.00 32.26 2.32
260 261 5.324409 TCCAGCACCTATTCTGAAAAATGT 58.676 37.500 0.00 0.00 32.26 2.71
261 262 6.480763 TCCAGCACCTATTCTGAAAAATGTA 58.519 36.000 0.00 0.00 32.26 2.29
262 263 6.374333 TCCAGCACCTATTCTGAAAAATGTAC 59.626 38.462 0.00 0.00 32.26 2.90
263 264 6.375455 CCAGCACCTATTCTGAAAAATGTACT 59.625 38.462 0.00 0.00 32.26 2.73
264 265 7.246311 CAGCACCTATTCTGAAAAATGTACTG 58.754 38.462 0.00 0.00 32.26 2.74
265 266 6.942576 AGCACCTATTCTGAAAAATGTACTGT 59.057 34.615 0.00 0.00 0.00 3.55
266 267 8.100791 AGCACCTATTCTGAAAAATGTACTGTA 58.899 33.333 0.00 0.00 0.00 2.74
267 268 8.893727 GCACCTATTCTGAAAAATGTACTGTAT 58.106 33.333 0.00 0.00 0.00 2.29
269 270 8.893727 ACCTATTCTGAAAAATGTACTGTATGC 58.106 33.333 0.00 0.00 0.00 3.14
270 271 8.892723 CCTATTCTGAAAAATGTACTGTATGCA 58.107 33.333 0.00 0.00 0.00 3.96
273 274 7.686438 TCTGAAAAATGTACTGTATGCATGT 57.314 32.000 10.16 0.85 33.32 3.21
274 275 8.109705 TCTGAAAAATGTACTGTATGCATGTT 57.890 30.769 10.16 0.00 32.56 2.71
275 276 8.575589 TCTGAAAAATGTACTGTATGCATGTTT 58.424 29.630 10.16 6.37 41.91 2.83
276 277 9.838975 CTGAAAAATGTACTGTATGCATGTTTA 57.161 29.630 10.16 0.00 39.99 2.01
281 282 9.627123 AAATGTACTGTATGCATGTTTATAGGT 57.373 29.630 10.16 0.00 33.32 3.08
282 283 9.627123 AATGTACTGTATGCATGTTTATAGGTT 57.373 29.630 10.16 0.00 33.32 3.50
411 412 7.495339 TTACGACAAAACTAAACAAAGTTGC 57.505 32.000 0.00 0.00 39.62 4.17
412 413 5.462405 ACGACAAAACTAAACAAAGTTGCA 58.538 33.333 0.00 0.00 39.62 4.08
413 414 5.921408 ACGACAAAACTAAACAAAGTTGCAA 59.079 32.000 0.00 0.00 39.62 4.08
414 415 6.088883 ACGACAAAACTAAACAAAGTTGCAAG 59.911 34.615 0.00 0.00 39.62 4.01
415 416 6.453659 CGACAAAACTAAACAAAGTTGCAAGG 60.454 38.462 0.00 0.00 39.62 3.61
416 417 5.121611 ACAAAACTAAACAAAGTTGCAAGGC 59.878 36.000 0.00 0.00 39.62 4.35
417 418 3.452755 ACTAAACAAAGTTGCAAGGCC 57.547 42.857 0.00 0.00 0.00 5.19
418 419 2.102420 ACTAAACAAAGTTGCAAGGCCC 59.898 45.455 0.00 0.00 0.00 5.80
419 420 0.908198 AAACAAAGTTGCAAGGCCCA 59.092 45.000 0.00 0.00 0.00 5.36
420 421 0.908198 AACAAAGTTGCAAGGCCCAA 59.092 45.000 0.00 0.00 0.00 4.12
421 422 0.177836 ACAAAGTTGCAAGGCCCAAC 59.822 50.000 13.69 13.69 42.11 3.77
422 423 0.177604 CAAAGTTGCAAGGCCCAACA 59.822 50.000 20.96 5.70 43.74 3.33
423 424 0.908198 AAAGTTGCAAGGCCCAACAA 59.092 45.000 20.96 11.11 43.74 2.83
424 425 0.177836 AAGTTGCAAGGCCCAACAAC 59.822 50.000 20.96 20.24 43.74 3.32
425 426 0.975040 AGTTGCAAGGCCCAACAACA 60.975 50.000 25.55 5.06 43.74 3.33
426 427 0.106521 GTTGCAAGGCCCAACAACAT 59.893 50.000 21.30 0.00 41.53 2.71
427 428 1.342819 GTTGCAAGGCCCAACAACATA 59.657 47.619 21.30 0.00 41.53 2.29
428 429 1.255882 TGCAAGGCCCAACAACATAG 58.744 50.000 0.00 0.00 0.00 2.23
429 430 1.202989 TGCAAGGCCCAACAACATAGA 60.203 47.619 0.00 0.00 0.00 1.98
430 431 1.202348 GCAAGGCCCAACAACATAGAC 59.798 52.381 0.00 0.00 0.00 2.59
431 432 2.513753 CAAGGCCCAACAACATAGACA 58.486 47.619 0.00 0.00 0.00 3.41
432 433 2.489329 CAAGGCCCAACAACATAGACAG 59.511 50.000 0.00 0.00 0.00 3.51
433 434 1.004745 AGGCCCAACAACATAGACAGG 59.995 52.381 0.00 0.00 0.00 4.00
434 435 1.463674 GCCCAACAACATAGACAGGG 58.536 55.000 0.00 0.00 37.87 4.45
435 436 1.463674 CCCAACAACATAGACAGGGC 58.536 55.000 0.00 0.00 0.00 5.19
436 437 1.463674 CCAACAACATAGACAGGGCC 58.536 55.000 0.00 0.00 0.00 5.80
437 438 1.463674 CAACAACATAGACAGGGCCC 58.536 55.000 16.46 16.46 0.00 5.80
438 439 1.072266 AACAACATAGACAGGGCCCA 58.928 50.000 27.56 1.75 0.00 5.36
439 440 1.072266 ACAACATAGACAGGGCCCAA 58.928 50.000 27.56 3.60 0.00 4.12
440 441 1.271926 ACAACATAGACAGGGCCCAAC 60.272 52.381 27.56 14.75 0.00 3.77
441 442 1.072266 AACATAGACAGGGCCCAACA 58.928 50.000 27.56 4.02 0.00 3.33
442 443 1.072266 ACATAGACAGGGCCCAACAA 58.928 50.000 27.56 5.30 0.00 2.83
443 444 1.640670 ACATAGACAGGGCCCAACAAT 59.359 47.619 27.56 7.75 0.00 2.71
444 445 2.849943 ACATAGACAGGGCCCAACAATA 59.150 45.455 27.56 10.44 0.00 1.90
445 446 3.117888 ACATAGACAGGGCCCAACAATAG 60.118 47.826 27.56 11.44 0.00 1.73
446 447 0.625849 AGACAGGGCCCAACAATAGG 59.374 55.000 27.56 4.87 0.00 2.57
447 448 0.623723 GACAGGGCCCAACAATAGGA 59.376 55.000 27.56 0.00 0.00 2.94
448 449 1.215423 GACAGGGCCCAACAATAGGAT 59.785 52.381 27.56 0.00 0.00 3.24
449 450 1.645919 ACAGGGCCCAACAATAGGATT 59.354 47.619 27.56 0.00 0.00 3.01
450 451 2.034124 CAGGGCCCAACAATAGGATTG 58.966 52.381 27.56 4.44 0.00 2.67
451 452 1.645919 AGGGCCCAACAATAGGATTGT 59.354 47.619 27.56 0.00 0.00 2.71
452 453 1.756538 GGGCCCAACAATAGGATTGTG 59.243 52.381 19.95 1.47 32.22 3.33
453 454 2.456577 GGCCCAACAATAGGATTGTGT 58.543 47.619 5.63 0.00 32.22 3.72
454 455 2.427095 GGCCCAACAATAGGATTGTGTC 59.573 50.000 5.63 0.00 32.22 3.67
455 456 2.097466 GCCCAACAATAGGATTGTGTCG 59.903 50.000 5.63 0.00 32.22 4.35
456 457 3.343617 CCCAACAATAGGATTGTGTCGT 58.656 45.455 5.63 0.00 32.22 4.34
457 458 3.126858 CCCAACAATAGGATTGTGTCGTG 59.873 47.826 5.63 1.17 32.22 4.35
458 459 3.126858 CCAACAATAGGATTGTGTCGTGG 59.873 47.826 5.63 6.10 32.22 4.94
459 460 2.356135 ACAATAGGATTGTGTCGTGGC 58.644 47.619 4.08 0.00 0.00 5.01
460 461 2.290008 ACAATAGGATTGTGTCGTGGCA 60.290 45.455 4.08 0.00 0.00 4.92
461 462 2.315925 ATAGGATTGTGTCGTGGCAG 57.684 50.000 0.00 0.00 0.00 4.85
462 463 1.262417 TAGGATTGTGTCGTGGCAGA 58.738 50.000 0.00 0.00 0.00 4.26
463 464 0.396435 AGGATTGTGTCGTGGCAGAA 59.604 50.000 0.00 0.00 0.00 3.02
464 465 1.003580 AGGATTGTGTCGTGGCAGAAT 59.996 47.619 0.00 0.00 35.46 2.40
465 466 1.812571 GGATTGTGTCGTGGCAGAATT 59.187 47.619 0.00 0.00 33.35 2.17
466 467 2.228822 GGATTGTGTCGTGGCAGAATTT 59.771 45.455 0.00 0.00 33.35 1.82
467 468 2.772568 TTGTGTCGTGGCAGAATTTG 57.227 45.000 0.00 0.00 0.00 2.32
468 469 1.674359 TGTGTCGTGGCAGAATTTGT 58.326 45.000 0.00 0.00 0.00 2.83
469 470 1.601903 TGTGTCGTGGCAGAATTTGTC 59.398 47.619 0.00 0.00 0.00 3.18
470 471 1.069227 GTGTCGTGGCAGAATTTGTCC 60.069 52.381 0.00 0.00 0.00 4.02
471 472 1.202758 TGTCGTGGCAGAATTTGTCCT 60.203 47.619 0.00 0.00 0.00 3.85
472 473 1.197721 GTCGTGGCAGAATTTGTCCTG 59.802 52.381 0.00 0.00 0.00 3.86
473 474 0.523072 CGTGGCAGAATTTGTCCTGG 59.477 55.000 0.00 0.00 0.00 4.45
474 475 0.890683 GTGGCAGAATTTGTCCTGGG 59.109 55.000 0.00 0.00 0.00 4.45
475 476 0.899717 TGGCAGAATTTGTCCTGGGC 60.900 55.000 0.00 0.00 0.00 5.36
476 477 0.899717 GGCAGAATTTGTCCTGGGCA 60.900 55.000 0.00 0.00 0.00 5.36
477 478 1.188863 GCAGAATTTGTCCTGGGCAT 58.811 50.000 0.00 0.00 0.00 4.40
478 479 1.134907 GCAGAATTTGTCCTGGGCATG 60.135 52.381 0.00 0.00 0.00 4.06
479 480 2.449464 CAGAATTTGTCCTGGGCATGA 58.551 47.619 0.00 0.00 0.00 3.07
480 481 3.028850 CAGAATTTGTCCTGGGCATGAT 58.971 45.455 0.00 0.00 0.00 2.45
481 482 3.028850 AGAATTTGTCCTGGGCATGATG 58.971 45.455 0.00 0.00 0.00 3.07
482 483 1.117150 ATTTGTCCTGGGCATGATGC 58.883 50.000 9.33 9.33 44.08 3.91
483 484 0.040058 TTTGTCCTGGGCATGATGCT 59.960 50.000 17.84 0.00 44.28 3.79
484 485 0.681887 TTGTCCTGGGCATGATGCTG 60.682 55.000 17.84 7.86 44.28 4.41
485 486 1.826921 GTCCTGGGCATGATGCTGG 60.827 63.158 17.84 16.03 44.28 4.85
486 487 2.520982 CCTGGGCATGATGCTGGG 60.521 66.667 17.84 12.50 44.28 4.45
487 488 2.277737 CTGGGCATGATGCTGGGT 59.722 61.111 17.84 0.00 44.28 4.51
488 489 2.043752 TGGGCATGATGCTGGGTG 60.044 61.111 17.84 0.00 44.28 4.61
489 490 3.534056 GGGCATGATGCTGGGTGC 61.534 66.667 17.84 0.00 44.28 5.01
490 491 3.896133 GGCATGATGCTGGGTGCG 61.896 66.667 17.84 0.00 44.28 5.34
491 492 3.896133 GCATGATGCTGGGTGCGG 61.896 66.667 10.72 0.00 46.63 5.69
492 493 3.896133 CATGATGCTGGGTGCGGC 61.896 66.667 0.00 0.00 46.63 6.53
493 494 4.429522 ATGATGCTGGGTGCGGCA 62.430 61.111 0.00 0.00 46.63 5.69
506 507 2.125552 CGGCATGGACGCTTCAGA 60.126 61.111 0.00 0.00 0.00 3.27
507 508 1.741401 CGGCATGGACGCTTCAGAA 60.741 57.895 0.00 0.00 0.00 3.02
508 509 1.298157 CGGCATGGACGCTTCAGAAA 61.298 55.000 0.00 0.00 0.00 2.52
509 510 0.169009 GGCATGGACGCTTCAGAAAC 59.831 55.000 0.00 0.00 0.00 2.78
510 511 0.179215 GCATGGACGCTTCAGAAACG 60.179 55.000 4.37 4.37 0.00 3.60
511 512 1.428448 CATGGACGCTTCAGAAACGA 58.572 50.000 12.86 0.00 0.00 3.85
512 513 1.798223 CATGGACGCTTCAGAAACGAA 59.202 47.619 12.86 0.00 0.00 3.85
513 514 1.942677 TGGACGCTTCAGAAACGAAA 58.057 45.000 12.86 0.00 0.00 3.46
514 515 2.281517 TGGACGCTTCAGAAACGAAAA 58.718 42.857 12.86 0.00 0.00 2.29
515 516 2.678836 TGGACGCTTCAGAAACGAAAAA 59.321 40.909 12.86 0.00 0.00 1.94
543 544 7.721286 AAAACAATCAAACAAAGACACAACA 57.279 28.000 0.00 0.00 0.00 3.33
544 545 6.949578 AACAATCAAACAAAGACACAACAG 57.050 33.333 0.00 0.00 0.00 3.16
545 546 5.410067 ACAATCAAACAAAGACACAACAGG 58.590 37.500 0.00 0.00 0.00 4.00
546 547 5.184864 ACAATCAAACAAAGACACAACAGGA 59.815 36.000 0.00 0.00 0.00 3.86
547 548 5.913137 ATCAAACAAAGACACAACAGGAA 57.087 34.783 0.00 0.00 0.00 3.36
548 549 5.713792 TCAAACAAAGACACAACAGGAAA 57.286 34.783 0.00 0.00 0.00 3.13
549 550 6.090483 TCAAACAAAGACACAACAGGAAAA 57.910 33.333 0.00 0.00 0.00 2.29
550 551 6.516718 TCAAACAAAGACACAACAGGAAAAA 58.483 32.000 0.00 0.00 0.00 1.94
551 552 6.644592 TCAAACAAAGACACAACAGGAAAAAG 59.355 34.615 0.00 0.00 0.00 2.27
552 553 5.722021 ACAAAGACACAACAGGAAAAAGT 57.278 34.783 0.00 0.00 0.00 2.66
553 554 6.096673 ACAAAGACACAACAGGAAAAAGTT 57.903 33.333 0.00 0.00 0.00 2.66
561 562 3.775661 ACAGGAAAAAGTTGTCAACGG 57.224 42.857 10.02 0.00 36.23 4.44
562 563 2.425668 ACAGGAAAAAGTTGTCAACGGG 59.574 45.455 10.02 0.00 36.23 5.28
563 564 2.685897 CAGGAAAAAGTTGTCAACGGGA 59.314 45.455 10.02 0.00 36.23 5.14
564 565 2.949644 AGGAAAAAGTTGTCAACGGGAG 59.050 45.455 10.02 0.00 36.23 4.30
565 566 2.034179 GGAAAAAGTTGTCAACGGGAGG 59.966 50.000 10.02 0.00 36.23 4.30
566 567 2.721425 AAAAGTTGTCAACGGGAGGA 57.279 45.000 10.02 0.00 36.23 3.71
567 568 2.951229 AAAGTTGTCAACGGGAGGAT 57.049 45.000 10.02 0.00 36.23 3.24
568 569 2.951229 AAGTTGTCAACGGGAGGATT 57.049 45.000 10.02 0.00 36.23 3.01
569 570 2.474410 AGTTGTCAACGGGAGGATTC 57.526 50.000 10.02 0.00 36.23 2.52
570 571 1.697432 AGTTGTCAACGGGAGGATTCA 59.303 47.619 10.02 0.00 36.23 2.57
571 572 1.804748 GTTGTCAACGGGAGGATTCAC 59.195 52.381 0.00 0.00 0.00 3.18
572 573 1.052617 TGTCAACGGGAGGATTCACA 58.947 50.000 0.00 0.00 0.00 3.58
573 574 1.418264 TGTCAACGGGAGGATTCACAA 59.582 47.619 0.00 0.00 0.00 3.33
574 575 2.039746 TGTCAACGGGAGGATTCACAAT 59.960 45.455 0.00 0.00 0.00 2.71
575 576 2.420022 GTCAACGGGAGGATTCACAATG 59.580 50.000 0.00 0.00 0.00 2.82
576 577 2.039746 TCAACGGGAGGATTCACAATGT 59.960 45.455 0.00 0.00 0.00 2.71
577 578 3.262151 TCAACGGGAGGATTCACAATGTA 59.738 43.478 0.00 0.00 0.00 2.29
578 579 3.543680 ACGGGAGGATTCACAATGTAG 57.456 47.619 0.00 0.00 0.00 2.74
579 580 2.170607 ACGGGAGGATTCACAATGTAGG 59.829 50.000 0.00 0.00 0.00 3.18
580 581 2.434336 CGGGAGGATTCACAATGTAGGA 59.566 50.000 0.00 0.00 0.00 2.94
581 582 3.071602 CGGGAGGATTCACAATGTAGGAT 59.928 47.826 0.00 0.00 0.00 3.24
582 583 4.392940 GGGAGGATTCACAATGTAGGATG 58.607 47.826 0.00 0.00 0.00 3.51
583 584 4.103153 GGGAGGATTCACAATGTAGGATGA 59.897 45.833 0.00 0.00 0.00 2.92
584 585 5.222007 GGGAGGATTCACAATGTAGGATGAT 60.222 44.000 0.00 0.00 0.00 2.45
585 586 5.704515 GGAGGATTCACAATGTAGGATGATG 59.295 44.000 0.00 0.00 0.00 3.07
586 587 6.257994 AGGATTCACAATGTAGGATGATGT 57.742 37.500 0.00 0.00 0.00 3.06
587 588 6.294473 AGGATTCACAATGTAGGATGATGTC 58.706 40.000 0.00 0.00 0.00 3.06
588 589 6.057533 GGATTCACAATGTAGGATGATGTCA 58.942 40.000 0.00 0.00 0.00 3.58
589 590 6.204301 GGATTCACAATGTAGGATGATGTCAG 59.796 42.308 0.00 0.00 0.00 3.51
590 591 5.937975 TCACAATGTAGGATGATGTCAGA 57.062 39.130 0.00 0.00 0.00 3.27
591 592 6.490241 TCACAATGTAGGATGATGTCAGAT 57.510 37.500 0.00 0.00 0.00 2.90
592 593 6.285990 TCACAATGTAGGATGATGTCAGATG 58.714 40.000 0.00 0.00 0.00 2.90
593 594 6.053650 CACAATGTAGGATGATGTCAGATGT 58.946 40.000 0.00 0.00 0.00 3.06
594 595 6.018180 CACAATGTAGGATGATGTCAGATGTG 60.018 42.308 0.00 0.00 0.00 3.21
595 596 6.126968 ACAATGTAGGATGATGTCAGATGTGA 60.127 38.462 0.00 0.00 0.00 3.58
596 597 5.526506 TGTAGGATGATGTCAGATGTGAG 57.473 43.478 0.00 0.00 31.53 3.51
597 598 4.343239 TGTAGGATGATGTCAGATGTGAGG 59.657 45.833 0.00 0.00 31.53 3.86
598 599 3.382278 AGGATGATGTCAGATGTGAGGT 58.618 45.455 0.00 0.00 31.53 3.85
599 600 4.550669 AGGATGATGTCAGATGTGAGGTA 58.449 43.478 0.00 0.00 31.53 3.08
600 601 5.153675 AGGATGATGTCAGATGTGAGGTAT 58.846 41.667 0.00 0.00 31.53 2.73
601 602 5.605908 AGGATGATGTCAGATGTGAGGTATT 59.394 40.000 0.00 0.00 31.53 1.89
602 603 6.784473 AGGATGATGTCAGATGTGAGGTATTA 59.216 38.462 0.00 0.00 31.53 0.98
603 604 7.457218 AGGATGATGTCAGATGTGAGGTATTAT 59.543 37.037 0.00 0.00 31.53 1.28
604 605 7.763528 GGATGATGTCAGATGTGAGGTATTATC 59.236 40.741 0.00 1.22 31.53 1.75
605 606 7.846101 TGATGTCAGATGTGAGGTATTATCT 57.154 36.000 0.00 0.00 31.53 1.98
606 607 7.890515 TGATGTCAGATGTGAGGTATTATCTC 58.109 38.462 0.00 0.00 31.53 2.75
607 608 7.506938 TGATGTCAGATGTGAGGTATTATCTCA 59.493 37.037 2.40 2.40 38.75 3.27
633 634 7.598278 CATCTAGATGTAACATAGTCAGACCC 58.402 42.308 22.42 0.00 34.23 4.46
634 635 6.069331 TCTAGATGTAACATAGTCAGACCCC 58.931 44.000 0.00 0.00 0.00 4.95
635 636 4.884961 AGATGTAACATAGTCAGACCCCT 58.115 43.478 0.00 0.00 0.00 4.79
636 637 6.027025 AGATGTAACATAGTCAGACCCCTA 57.973 41.667 0.00 0.00 0.00 3.53
637 638 6.071984 AGATGTAACATAGTCAGACCCCTAG 58.928 44.000 0.00 0.00 0.00 3.02
638 639 3.958798 TGTAACATAGTCAGACCCCTAGC 59.041 47.826 0.00 0.00 0.00 3.42
639 640 2.848678 ACATAGTCAGACCCCTAGCA 57.151 50.000 0.00 0.00 0.00 3.49
640 641 3.336509 ACATAGTCAGACCCCTAGCAT 57.663 47.619 0.00 0.00 0.00 3.79
641 642 3.658725 ACATAGTCAGACCCCTAGCATT 58.341 45.455 0.00 0.00 0.00 3.56
642 643 4.040755 ACATAGTCAGACCCCTAGCATTT 58.959 43.478 0.00 0.00 0.00 2.32
643 644 4.475016 ACATAGTCAGACCCCTAGCATTTT 59.525 41.667 0.00 0.00 0.00 1.82
644 645 3.356529 AGTCAGACCCCTAGCATTTTG 57.643 47.619 0.00 0.00 0.00 2.44
645 646 2.644798 AGTCAGACCCCTAGCATTTTGT 59.355 45.455 0.00 0.00 0.00 2.83
646 647 3.844211 AGTCAGACCCCTAGCATTTTGTA 59.156 43.478 0.00 0.00 0.00 2.41
647 648 3.939592 GTCAGACCCCTAGCATTTTGTAC 59.060 47.826 0.00 0.00 0.00 2.90
648 649 3.844211 TCAGACCCCTAGCATTTTGTACT 59.156 43.478 0.00 0.00 0.00 2.73
649 650 4.081087 TCAGACCCCTAGCATTTTGTACTC 60.081 45.833 0.00 0.00 0.00 2.59
650 651 4.080863 CAGACCCCTAGCATTTTGTACTCT 60.081 45.833 0.00 0.00 0.00 3.24
651 652 4.162509 AGACCCCTAGCATTTTGTACTCTC 59.837 45.833 0.00 0.00 0.00 3.20
652 653 3.118738 ACCCCTAGCATTTTGTACTCTCG 60.119 47.826 0.00 0.00 0.00 4.04
653 654 3.132289 CCCCTAGCATTTTGTACTCTCGA 59.868 47.826 0.00 0.00 0.00 4.04
654 655 4.382685 CCCCTAGCATTTTGTACTCTCGAA 60.383 45.833 0.00 0.00 0.00 3.71
655 656 5.175859 CCCTAGCATTTTGTACTCTCGAAA 58.824 41.667 0.00 0.00 0.00 3.46
656 657 5.642063 CCCTAGCATTTTGTACTCTCGAAAA 59.358 40.000 0.00 0.00 0.00 2.29
657 658 6.148811 CCCTAGCATTTTGTACTCTCGAAAAA 59.851 38.462 0.00 0.00 0.00 1.94
677 678 5.887214 AAAAAGACCCCTAGCATTTTTGT 57.113 34.783 0.00 0.00 33.20 2.83
678 679 6.987403 AAAAAGACCCCTAGCATTTTTGTA 57.013 33.333 0.00 0.00 33.20 2.41
679 680 7.553504 AAAAAGACCCCTAGCATTTTTGTAT 57.446 32.000 0.00 0.00 33.20 2.29
680 681 6.530019 AAAGACCCCTAGCATTTTTGTATG 57.470 37.500 0.00 0.00 0.00 2.39
681 682 5.193099 AGACCCCTAGCATTTTTGTATGT 57.807 39.130 0.00 0.00 0.00 2.29
682 683 6.321821 AGACCCCTAGCATTTTTGTATGTA 57.678 37.500 0.00 0.00 0.00 2.29
683 684 6.727394 AGACCCCTAGCATTTTTGTATGTAA 58.273 36.000 0.00 0.00 0.00 2.41
684 685 6.828785 AGACCCCTAGCATTTTTGTATGTAAG 59.171 38.462 0.00 0.00 0.00 2.34
735 741 2.341846 TTTGCTCCGACAAAACCTCT 57.658 45.000 0.00 0.00 36.62 3.69
737 743 3.478857 TTGCTCCGACAAAACCTCTAA 57.521 42.857 0.00 0.00 0.00 2.10
748 754 6.351626 CGACAAAACCTCTAAGTAACCCCTAT 60.352 42.308 0.00 0.00 0.00 2.57
757 763 1.533753 TAACCCCTATACCGGCCGG 60.534 63.158 42.17 42.17 42.03 6.13
810 816 0.534203 GGGTGTTGAAGCGTTCCTGA 60.534 55.000 0.00 0.00 0.00 3.86
858 875 2.022129 GTCGCCACAGTCAGAACCG 61.022 63.158 0.00 0.00 0.00 4.44
871 888 4.163458 AGTCAGAACCGGCCAAATATAGAA 59.837 41.667 0.00 0.00 0.00 2.10
874 891 2.651382 ACCGGCCAAATATAGAACCC 57.349 50.000 0.00 0.00 0.00 4.11
875 892 2.132686 ACCGGCCAAATATAGAACCCT 58.867 47.619 0.00 0.00 0.00 4.34
952 969 2.229792 CACTTGCAAGTACCACACCAT 58.770 47.619 30.67 2.22 37.08 3.55
989 1006 3.671164 GCGAGACCACTACTGAAGAAGAC 60.671 52.174 0.00 0.00 0.00 3.01
990 1007 3.425094 CGAGACCACTACTGAAGAAGACG 60.425 52.174 0.00 0.00 0.00 4.18
991 1008 3.752222 GAGACCACTACTGAAGAAGACGA 59.248 47.826 0.00 0.00 0.00 4.20
992 1009 3.502979 AGACCACTACTGAAGAAGACGAC 59.497 47.826 0.00 0.00 0.00 4.34
993 1010 2.225963 ACCACTACTGAAGAAGACGACG 59.774 50.000 0.00 0.00 0.00 5.12
994 1011 2.483106 CCACTACTGAAGAAGACGACGA 59.517 50.000 0.00 0.00 0.00 4.20
1089 1106 1.134401 CACGCATGGAAGAGGGTATGT 60.134 52.381 0.00 0.00 0.00 2.29
1102 1136 6.229936 AGAGGGTATGTAAGCAAATCGTTA 57.770 37.500 0.00 0.00 0.00 3.18
1114 1148 7.623268 AAGCAAATCGTTACATGTTTCTTTC 57.377 32.000 2.30 0.00 0.00 2.62
1120 1154 4.273969 TCGTTACATGTTTCTTTCGCCTTT 59.726 37.500 2.30 0.00 0.00 3.11
1132 1166 2.459060 TCGCCTTTATTTCACCGTCA 57.541 45.000 0.00 0.00 0.00 4.35
1135 1169 2.223249 CGCCTTTATTTCACCGTCATGG 60.223 50.000 0.00 0.00 46.41 3.66
1136 1170 3.013921 GCCTTTATTTCACCGTCATGGA 58.986 45.455 0.00 0.00 42.00 3.41
1137 1171 3.632145 GCCTTTATTTCACCGTCATGGAT 59.368 43.478 0.00 0.00 42.00 3.41
1138 1172 4.498009 GCCTTTATTTCACCGTCATGGATG 60.498 45.833 0.00 0.00 42.00 3.51
1140 1174 4.495690 TTATTTCACCGTCATGGATGGA 57.504 40.909 11.29 0.00 40.94 3.41
1141 1175 3.582998 ATTTCACCGTCATGGATGGAT 57.417 42.857 11.29 0.00 40.94 3.41
1142 1176 2.330440 TTCACCGTCATGGATGGATG 57.670 50.000 11.29 6.21 40.94 3.51
1143 1177 1.203237 TCACCGTCATGGATGGATGT 58.797 50.000 11.29 0.00 40.94 3.06
1144 1178 1.138859 TCACCGTCATGGATGGATGTC 59.861 52.381 11.29 0.00 40.94 3.06
1145 1179 1.134431 CACCGTCATGGATGGATGTCA 60.134 52.381 11.29 0.00 40.94 3.58
1146 1180 1.770658 ACCGTCATGGATGGATGTCAT 59.229 47.619 11.29 0.00 40.94 3.06
1153 1187 3.577231 GATGGATGTCATCTCGCGT 57.423 52.632 12.54 0.00 46.59 6.01
1154 1188 1.858091 GATGGATGTCATCTCGCGTT 58.142 50.000 12.54 0.00 46.59 4.84
1155 1189 2.205074 GATGGATGTCATCTCGCGTTT 58.795 47.619 12.54 0.00 46.59 3.60
1156 1190 1.358877 TGGATGTCATCTCGCGTTTG 58.641 50.000 12.54 2.45 0.00 2.93
1157 1191 0.652592 GGATGTCATCTCGCGTTTGG 59.347 55.000 12.54 0.00 0.00 3.28
1158 1192 1.359848 GATGTCATCTCGCGTTTGGT 58.640 50.000 5.77 0.00 0.00 3.67
1159 1193 1.324736 GATGTCATCTCGCGTTTGGTC 59.675 52.381 5.77 1.30 0.00 4.02
1160 1194 0.317160 TGTCATCTCGCGTTTGGTCT 59.683 50.000 5.77 0.00 0.00 3.85
1161 1195 0.716108 GTCATCTCGCGTTTGGTCTG 59.284 55.000 5.77 0.00 0.00 3.51
1162 1196 0.601057 TCATCTCGCGTTTGGTCTGA 59.399 50.000 5.77 0.00 0.00 3.27
1163 1197 0.716108 CATCTCGCGTTTGGTCTGAC 59.284 55.000 5.77 0.00 0.00 3.51
1164 1198 0.732880 ATCTCGCGTTTGGTCTGACG 60.733 55.000 5.77 0.00 41.89 4.35
1165 1199 1.371267 CTCGCGTTTGGTCTGACGA 60.371 57.895 5.77 0.00 41.53 4.20
1166 1200 0.732880 CTCGCGTTTGGTCTGACGAT 60.733 55.000 5.77 0.00 41.53 3.73
1167 1201 1.006825 TCGCGTTTGGTCTGACGATG 61.007 55.000 5.77 0.00 41.53 3.84
1168 1202 1.006825 CGCGTTTGGTCTGACGATGA 61.007 55.000 0.00 0.00 41.53 2.92
1169 1203 1.359848 GCGTTTGGTCTGACGATGAT 58.640 50.000 1.07 0.00 41.53 2.45
1170 1204 1.061131 GCGTTTGGTCTGACGATGATG 59.939 52.381 1.07 0.00 41.53 3.07
1171 1205 1.061131 CGTTTGGTCTGACGATGATGC 59.939 52.381 1.07 0.00 41.53 3.91
1172 1206 2.076100 GTTTGGTCTGACGATGATGCA 58.924 47.619 1.07 0.00 0.00 3.96
1173 1207 2.679837 GTTTGGTCTGACGATGATGCAT 59.320 45.455 0.00 0.00 0.00 3.96
1174 1208 1.944032 TGGTCTGACGATGATGCATG 58.056 50.000 2.46 0.00 0.00 4.06
1175 1209 0.585357 GGTCTGACGATGATGCATGC 59.415 55.000 11.82 11.82 0.00 4.06
1176 1210 1.292992 GTCTGACGATGATGCATGCA 58.707 50.000 25.04 25.04 0.00 3.96
1177 1211 1.871676 GTCTGACGATGATGCATGCAT 59.128 47.619 32.66 32.66 39.69 3.96
1339 1373 3.362706 ACGCCATCTTCTACTCCTACAA 58.637 45.455 0.00 0.00 0.00 2.41
1387 1421 3.003173 CGAGGAGGAGGTGGCCAA 61.003 66.667 7.24 0.00 0.00 4.52
1405 1439 1.474077 CAACCAGATGGCAAGTAAGGC 59.526 52.381 0.00 0.00 39.32 4.35
1414 1448 0.457443 GCAAGTAAGGCAGCCATTCC 59.543 55.000 15.80 0.00 0.00 3.01
1415 1449 1.106285 CAAGTAAGGCAGCCATTCCC 58.894 55.000 15.80 0.00 0.00 3.97
1420 1454 0.688749 AAGGCAGCCATTCCCATTCC 60.689 55.000 15.80 0.00 0.00 3.01
1426 1460 3.036091 CAGCCATTCCCATTCCTTCATT 58.964 45.455 0.00 0.00 0.00 2.57
1428 1462 4.038402 CAGCCATTCCCATTCCTTCATTAC 59.962 45.833 0.00 0.00 0.00 1.89
1433 1467 6.040166 CCATTCCCATTCCTTCATTACTCAAG 59.960 42.308 0.00 0.00 0.00 3.02
1434 1468 6.387192 TTCCCATTCCTTCATTACTCAAGA 57.613 37.500 0.00 0.00 0.00 3.02
1435 1469 6.387192 TCCCATTCCTTCATTACTCAAGAA 57.613 37.500 0.00 0.00 0.00 2.52
1439 1473 7.201767 CCCATTCCTTCATTACTCAAGAACATC 60.202 40.741 0.00 0.00 0.00 3.06
1440 1474 7.337689 CCATTCCTTCATTACTCAAGAACATCA 59.662 37.037 0.00 0.00 0.00 3.07
1442 1476 8.868522 TTCCTTCATTACTCAAGAACATCAAT 57.131 30.769 0.00 0.00 0.00 2.57
1445 1479 6.441093 TCATTACTCAAGAACATCAATGGC 57.559 37.500 0.00 0.00 0.00 4.40
1447 1481 6.660521 TCATTACTCAAGAACATCAATGGCTT 59.339 34.615 0.00 0.00 0.00 4.35
1448 1482 4.778534 ACTCAAGAACATCAATGGCTTG 57.221 40.909 15.79 15.79 41.49 4.01
1449 1483 3.508793 ACTCAAGAACATCAATGGCTTGG 59.491 43.478 19.06 14.65 40.99 3.61
1450 1484 2.231964 TCAAGAACATCAATGGCTTGGC 59.768 45.455 19.06 0.00 40.99 4.52
1462 1496 3.460648 GCTTGGCCACGTATCTCTT 57.539 52.632 3.88 0.00 0.00 2.85
1463 1497 1.739067 GCTTGGCCACGTATCTCTTT 58.261 50.000 3.88 0.00 0.00 2.52
1464 1498 2.084546 GCTTGGCCACGTATCTCTTTT 58.915 47.619 3.88 0.00 0.00 2.27
1465 1499 3.267483 GCTTGGCCACGTATCTCTTTTA 58.733 45.455 3.88 0.00 0.00 1.52
1466 1500 3.063588 GCTTGGCCACGTATCTCTTTTAC 59.936 47.826 3.88 0.00 0.00 2.01
1467 1501 3.965379 TGGCCACGTATCTCTTTTACA 57.035 42.857 0.00 0.00 0.00 2.41
1468 1502 3.857052 TGGCCACGTATCTCTTTTACAG 58.143 45.455 0.00 0.00 0.00 2.74
1469 1503 3.259876 TGGCCACGTATCTCTTTTACAGT 59.740 43.478 0.00 0.00 0.00 3.55
1470 1504 4.251268 GGCCACGTATCTCTTTTACAGTT 58.749 43.478 0.00 0.00 0.00 3.16
1471 1505 4.694037 GGCCACGTATCTCTTTTACAGTTT 59.306 41.667 0.00 0.00 0.00 2.66
1472 1506 5.163884 GGCCACGTATCTCTTTTACAGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
1473 1507 5.163884 GCCACGTATCTCTTTTACAGTTTCC 60.164 44.000 0.00 0.00 0.00 3.13
1474 1508 5.350640 CCACGTATCTCTTTTACAGTTTCCC 59.649 44.000 0.00 0.00 0.00 3.97
1475 1509 5.350640 CACGTATCTCTTTTACAGTTTCCCC 59.649 44.000 0.00 0.00 0.00 4.81
1495 1529 6.730447 TCCCCTTGATTGATTAACTGATTGA 58.270 36.000 0.00 0.00 0.00 2.57
1583 1621 2.421314 CTGCACACGACCAGGTCA 59.579 61.111 20.13 0.00 32.09 4.02
1838 1876 1.527034 TCAACAAGGACATGCTGCTC 58.473 50.000 0.00 0.00 0.00 4.26
2005 2043 1.657487 CCCGCGTCGCTGTATACAG 60.657 63.158 25.68 25.68 46.40 2.74
2426 2464 1.507141 CCAACTGCACCGTCAACCTC 61.507 60.000 0.00 0.00 0.00 3.85
2539 2577 1.987855 TGGGGATGACCGTCCTCAC 60.988 63.158 6.73 2.19 43.81 3.51
2570 2608 0.107214 TCGGGATGATCCTTGCCAAC 60.107 55.000 11.87 0.00 36.57 3.77
2582 2620 3.195698 GCCAACGGCGAGATGGAC 61.196 66.667 26.39 16.99 44.72 4.02
2720 2758 3.144285 TCCAAAACGGAGCTCGGT 58.856 55.556 20.25 20.25 44.45 4.69
2837 2875 4.162690 ATCCTCGCCGCCTTCACC 62.163 66.667 0.00 0.00 0.00 4.02
3396 3434 4.351938 TTGACCCGACGGTGCTCG 62.352 66.667 13.94 0.00 44.88 5.03
3489 3527 2.007547 GCTACGTCTTTGGGAAGCTCC 61.008 57.143 0.00 0.00 35.23 4.70
3555 3593 5.767277 AAATGCCCTGGATTGAGATTTTT 57.233 34.783 0.00 0.00 0.00 1.94
3593 3631 1.611936 GCTCAAGGGAAGGAAGTGTCC 60.612 57.143 0.00 0.00 45.35 4.02
3610 3648 7.664318 GGAAGTGTCCAGAGTTTAGGAATTTTA 59.336 37.037 0.00 0.00 44.26 1.52
3654 3694 9.157104 GAGAATGAGAAGAGTTTAGGTTTTAGG 57.843 37.037 0.00 0.00 0.00 2.69
3714 3758 6.594159 GGCTCTAGAGTGTAAATAAAGTGCAA 59.406 38.462 20.75 0.00 0.00 4.08
3749 3793 6.269194 TCTTGTAGATTCCCCCTTTCTAGAA 58.731 40.000 0.00 0.00 0.00 2.10
3760 3804 4.220602 CCCCTTTCTAGAAATTGTGGTTGG 59.779 45.833 18.02 12.46 0.00 3.77
3763 3807 4.846779 TTCTAGAAATTGTGGTTGGTGC 57.153 40.909 1.68 0.00 0.00 5.01
3774 3818 3.937706 TGTGGTTGGTGCAATTTTCTTTG 59.062 39.130 0.00 0.00 0.00 2.77
3789 3833 7.736447 ATTTTCTTTGTGTGTTCTCCTCTAG 57.264 36.000 0.00 0.00 0.00 2.43
3865 3909 8.755696 TTCACTACATTTAATGAAACAATGCC 57.244 30.769 12.28 0.00 32.08 4.40
3866 3910 8.121305 TCACTACATTTAATGAAACAATGCCT 57.879 30.769 12.28 0.00 32.08 4.75
3902 3946 8.793592 AGAAATACTAACTGGTCAAAATTCCAC 58.206 33.333 0.00 0.00 0.00 4.02
3907 3951 1.812571 CTGGTCAAAATTCCACGGGAG 59.187 52.381 0.00 0.00 31.21 4.30
3920 3964 0.973632 ACGGGAGGGGAAAATTTTGC 59.026 50.000 13.54 13.54 0.00 3.68
3942 3986 4.800471 GCATGTTGGTGCTTAAAATAGAGC 59.200 41.667 0.00 0.00 41.82 4.09
3982 4026 2.514803 ACGCCAAAAGCCTATTGAACT 58.485 42.857 0.00 0.00 38.78 3.01
4006 4050 8.333984 ACTAGCATACCCTAAAAAGGTTAACAT 58.666 33.333 8.10 0.00 38.89 2.71
4025 4123 5.728351 ACATACAAATTACCATCGAACGG 57.272 39.130 2.80 2.80 0.00 4.44
4026 4124 5.421277 ACATACAAATTACCATCGAACGGA 58.579 37.500 10.99 0.00 0.00 4.69
4028 4126 6.372103 ACATACAAATTACCATCGAACGGAAA 59.628 34.615 10.99 0.00 0.00 3.13
4055 4154 5.773176 TCAAAATGGAAAAGAAGGGACCTAC 59.227 40.000 0.00 0.00 0.00 3.18
4063 4162 0.606604 GAAGGGACCTACGTCTGCAA 59.393 55.000 0.00 0.00 39.15 4.08
4070 4169 4.495422 GGACCTACGTCTGCAATATATGG 58.505 47.826 0.00 0.00 39.15 2.74
4072 4171 4.883083 ACCTACGTCTGCAATATATGGTG 58.117 43.478 0.00 0.00 0.00 4.17
4074 4173 4.021456 CCTACGTCTGCAATATATGGTGGA 60.021 45.833 0.00 0.00 0.00 4.02
4075 4174 3.995199 ACGTCTGCAATATATGGTGGAG 58.005 45.455 0.67 0.67 34.75 3.86
4078 4177 4.708177 GTCTGCAATATATGGTGGAGTGT 58.292 43.478 6.00 0.00 34.99 3.55
4079 4178 4.752101 GTCTGCAATATATGGTGGAGTGTC 59.248 45.833 6.00 0.00 34.99 3.67
4105 4205 9.092876 CATACTCTTTGGACTCTATCTTTTCAC 57.907 37.037 0.00 0.00 0.00 3.18
4124 4224 1.339727 ACGCCTCCCAAGTTTATGACC 60.340 52.381 0.00 0.00 0.00 4.02
4135 4235 7.399765 TCCCAAGTTTATGACCATGATCATTTT 59.600 33.333 8.16 0.00 39.97 1.82
4137 4237 9.090692 CCAAGTTTATGACCATGATCATTTTTC 57.909 33.333 8.16 3.37 39.97 2.29
4145 4245 6.944290 TGACCATGATCATTTTTCTTGAGAGT 59.056 34.615 5.16 0.00 0.00 3.24
4152 4252 9.506018 TGATCATTTTTCTTGAGAGTATTGACA 57.494 29.630 0.00 0.00 0.00 3.58
4160 4260 4.251103 TGAGAGTATTGACAGGGCTAGA 57.749 45.455 0.00 0.00 0.00 2.43
4167 4267 1.489481 TGACAGGGCTAGAGGTCATG 58.511 55.000 0.00 0.00 37.36 3.07
4175 4275 2.615912 GGCTAGAGGTCATGATTGTTGC 59.384 50.000 0.00 2.18 0.00 4.17
4198 4298 3.813596 GCGGTATGCAGGAAGGTG 58.186 61.111 0.00 0.00 45.45 4.00
4220 4320 4.037690 GTCTTTGCAACATTGTGACTGAC 58.962 43.478 0.00 0.00 0.00 3.51
4237 4337 4.248859 ACTGACAATACAGACATGTGAGC 58.751 43.478 1.15 0.00 40.79 4.26
4245 4345 2.158986 ACAGACATGTGAGCTCATAGGC 60.159 50.000 22.78 16.16 38.57 3.93
4246 4346 2.113807 AGACATGTGAGCTCATAGGCA 58.886 47.619 22.78 15.11 34.17 4.75
4260 4360 5.623141 GCTCATAGGCAAGACGATGATGATA 60.623 44.000 0.00 0.00 33.13 2.15
4266 4366 4.060900 GCAAGACGATGATGATACCACAT 58.939 43.478 0.00 0.00 0.00 3.21
4270 4370 4.021632 AGACGATGATGATACCACATCTGG 60.022 45.833 0.00 0.00 44.61 3.86
4274 4374 3.657610 TGATGATACCACATCTGGAGGT 58.342 45.455 0.00 0.00 44.61 3.85
4275 4375 4.814967 TGATGATACCACATCTGGAGGTA 58.185 43.478 0.00 6.34 44.61 3.08
4280 4380 5.833667 TGATACCACATCTGGAGGTACTTAG 59.166 44.000 0.00 0.00 41.55 2.18
4299 4399 2.267045 GGGGGTGATTTGTCTGTGC 58.733 57.895 0.00 0.00 0.00 4.57
4318 4418 1.463444 GCGTTGTACTTGGTAGGCTTG 59.537 52.381 0.00 0.00 0.00 4.01
4324 4424 2.047655 TTGGTAGGCTTGCCGACG 60.048 61.111 16.40 0.00 0.00 5.12
4369 4469 6.314400 TCTTTGTTTATCGGTAGGTATGTTGC 59.686 38.462 0.00 0.00 0.00 4.17
4371 4471 3.374220 TTATCGGTAGGTATGTTGCGG 57.626 47.619 0.00 0.00 0.00 5.69
4383 4483 0.753479 TGTTGCGGGGTGTTTCACAT 60.753 50.000 2.41 0.00 35.86 3.21
4384 4484 1.240256 GTTGCGGGGTGTTTCACATA 58.760 50.000 2.41 0.00 35.86 2.29
4385 4485 1.816224 GTTGCGGGGTGTTTCACATAT 59.184 47.619 2.41 0.00 35.86 1.78
4386 4486 2.208132 TGCGGGGTGTTTCACATATT 57.792 45.000 2.41 0.00 35.86 1.28
4387 4487 2.520069 TGCGGGGTGTTTCACATATTT 58.480 42.857 2.41 0.00 35.86 1.40
4440 4540 5.395879 GGGTTTTCCAGCCAAGTTTTTCTTA 60.396 40.000 0.00 0.00 43.39 2.10
4462 4562 7.715249 TCTTATAAACGGATCATTTCTCCCTTG 59.285 37.037 0.00 0.00 0.00 3.61
4464 4564 1.312815 CGGATCATTTCTCCCTTGGC 58.687 55.000 0.00 0.00 0.00 4.52
4466 4566 2.104792 CGGATCATTTCTCCCTTGGCTA 59.895 50.000 0.00 0.00 0.00 3.93
4489 4589 7.599998 GCTAGATTTTCTGAAATTTCTTTGGCA 59.400 33.333 18.64 0.00 35.65 4.92
4504 4604 8.514136 TTTCTTTGGCAATAAATAACTCAACG 57.486 30.769 0.00 0.00 0.00 4.10
4505 4605 6.616947 TCTTTGGCAATAAATAACTCAACGG 58.383 36.000 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 7.680442 TGTCGAATGTCCTATGAATCAAAAA 57.320 32.000 0.00 0.00 0.00 1.94
85 86 7.336679 ACATGTCGAATGTCCTATGAATCAAAA 59.663 33.333 0.00 0.00 0.00 2.44
86 87 6.823182 ACATGTCGAATGTCCTATGAATCAAA 59.177 34.615 0.00 0.00 0.00 2.69
87 88 6.348498 ACATGTCGAATGTCCTATGAATCAA 58.652 36.000 0.00 0.00 0.00 2.57
88 89 5.917462 ACATGTCGAATGTCCTATGAATCA 58.083 37.500 0.00 0.00 0.00 2.57
89 90 5.985530 TGACATGTCGAATGTCCTATGAATC 59.014 40.000 24.83 9.16 45.70 2.52
90 91 5.917462 TGACATGTCGAATGTCCTATGAAT 58.083 37.500 24.83 1.92 45.70 2.57
91 92 5.337578 TGACATGTCGAATGTCCTATGAA 57.662 39.130 24.83 11.83 45.70 2.57
92 93 5.068987 TGATGACATGTCGAATGTCCTATGA 59.931 40.000 24.83 14.16 45.70 2.15
93 94 5.291971 TGATGACATGTCGAATGTCCTATG 58.708 41.667 24.83 10.11 45.70 2.23
94 95 5.535753 TGATGACATGTCGAATGTCCTAT 57.464 39.130 24.83 17.70 45.70 2.57
95 96 5.337578 TTGATGACATGTCGAATGTCCTA 57.662 39.130 24.83 15.10 45.70 2.94
96 97 3.893326 TGATGACATGTCGAATGTCCT 57.107 42.857 24.83 19.54 45.70 3.85
97 98 4.944962 TTTGATGACATGTCGAATGTCC 57.055 40.909 24.83 16.64 45.70 4.02
98 99 7.801547 AATTTTTGATGACATGTCGAATGTC 57.198 32.000 20.54 22.83 46.28 3.06
99 100 7.866898 TCAAATTTTTGATGACATGTCGAATGT 59.133 29.630 20.54 11.40 41.88 2.71
100 101 8.230112 TCAAATTTTTGATGACATGTCGAATG 57.770 30.769 20.54 8.31 41.88 2.67
101 102 8.815141 TTCAAATTTTTGATGACATGTCGAAT 57.185 26.923 20.54 9.76 45.65 3.34
102 103 8.538856 GTTTCAAATTTTTGATGACATGTCGAA 58.461 29.630 20.54 10.50 45.65 3.71
103 104 7.704047 TGTTTCAAATTTTTGATGACATGTCGA 59.296 29.630 20.54 10.47 45.65 4.20
104 105 7.839493 TGTTTCAAATTTTTGATGACATGTCG 58.161 30.769 20.54 2.28 45.65 4.35
114 115 9.311916 ACTCGAAATCATGTTTCAAATTTTTGA 57.688 25.926 16.01 1.66 44.78 2.69
115 116 9.360514 CACTCGAAATCATGTTTCAAATTTTTG 57.639 29.630 16.01 0.00 39.48 2.44
116 117 9.311916 TCACTCGAAATCATGTTTCAAATTTTT 57.688 25.926 16.01 0.00 0.00 1.94
117 118 8.870160 TCACTCGAAATCATGTTTCAAATTTT 57.130 26.923 16.01 0.00 0.00 1.82
118 119 8.870160 TTCACTCGAAATCATGTTTCAAATTT 57.130 26.923 16.01 5.03 0.00 1.82
120 121 9.778993 CTATTCACTCGAAATCATGTTTCAAAT 57.221 29.630 16.01 10.92 34.01 2.32
121 122 8.998377 TCTATTCACTCGAAATCATGTTTCAAA 58.002 29.630 16.01 6.93 34.01 2.69
122 123 8.546597 TCTATTCACTCGAAATCATGTTTCAA 57.453 30.769 16.01 7.02 34.01 2.69
123 124 8.443160 GTTCTATTCACTCGAAATCATGTTTCA 58.557 33.333 16.01 6.94 34.01 2.69
124 125 8.660373 AGTTCTATTCACTCGAAATCATGTTTC 58.340 33.333 9.42 9.42 34.01 2.78
125 126 8.553459 AGTTCTATTCACTCGAAATCATGTTT 57.447 30.769 0.00 0.00 34.01 2.83
126 127 8.553459 AAGTTCTATTCACTCGAAATCATGTT 57.447 30.769 0.00 0.00 34.01 2.71
127 128 7.819415 TGAAGTTCTATTCACTCGAAATCATGT 59.181 33.333 4.17 0.00 34.31 3.21
128 129 8.189709 TGAAGTTCTATTCACTCGAAATCATG 57.810 34.615 4.17 0.00 34.31 3.07
129 130 8.824781 CATGAAGTTCTATTCACTCGAAATCAT 58.175 33.333 4.17 0.00 41.76 2.45
130 131 7.819415 ACATGAAGTTCTATTCACTCGAAATCA 59.181 33.333 0.00 0.00 41.76 2.57
131 132 8.190888 ACATGAAGTTCTATTCACTCGAAATC 57.809 34.615 0.00 0.00 41.76 2.17
132 133 9.653287 TTACATGAAGTTCTATTCACTCGAAAT 57.347 29.630 0.00 0.00 41.76 2.17
133 134 9.483916 TTTACATGAAGTTCTATTCACTCGAAA 57.516 29.630 0.00 0.00 41.76 3.46
134 135 8.922676 GTTTACATGAAGTTCTATTCACTCGAA 58.077 33.333 0.00 0.00 41.76 3.71
135 136 8.304596 AGTTTACATGAAGTTCTATTCACTCGA 58.695 33.333 0.00 0.00 41.76 4.04
136 137 8.467402 AGTTTACATGAAGTTCTATTCACTCG 57.533 34.615 0.00 0.00 41.76 4.18
138 139 9.877178 CCTAGTTTACATGAAGTTCTATTCACT 57.123 33.333 0.00 2.60 41.76 3.41
139 140 9.654663 ACCTAGTTTACATGAAGTTCTATTCAC 57.345 33.333 0.00 0.00 41.76 3.18
142 143 9.819267 GCTACCTAGTTTACATGAAGTTCTATT 57.181 33.333 0.00 0.00 0.00 1.73
143 144 8.978472 TGCTACCTAGTTTACATGAAGTTCTAT 58.022 33.333 0.00 0.00 0.00 1.98
144 145 8.357290 TGCTACCTAGTTTACATGAAGTTCTA 57.643 34.615 0.00 0.00 0.00 2.10
145 146 7.241042 TGCTACCTAGTTTACATGAAGTTCT 57.759 36.000 0.00 0.00 0.00 3.01
146 147 9.765795 ATATGCTACCTAGTTTACATGAAGTTC 57.234 33.333 0.00 0.00 0.00 3.01
147 148 9.547753 CATATGCTACCTAGTTTACATGAAGTT 57.452 33.333 0.00 0.00 0.00 2.66
148 149 8.924303 TCATATGCTACCTAGTTTACATGAAGT 58.076 33.333 0.00 0.00 0.00 3.01
149 150 9.764363 TTCATATGCTACCTAGTTTACATGAAG 57.236 33.333 0.00 0.00 0.00 3.02
151 152 9.764363 CTTTCATATGCTACCTAGTTTACATGA 57.236 33.333 0.00 0.00 0.00 3.07
152 153 9.547753 ACTTTCATATGCTACCTAGTTTACATG 57.452 33.333 0.00 0.00 0.00 3.21
154 155 9.953565 AAACTTTCATATGCTACCTAGTTTACA 57.046 29.630 0.00 0.00 34.04 2.41
189 190 9.528489 AAGGCTAAGTAATCAATAGTCCAAAAA 57.472 29.630 0.00 0.00 0.00 1.94
190 191 9.528489 AAAGGCTAAGTAATCAATAGTCCAAAA 57.472 29.630 0.00 0.00 0.00 2.44
191 192 9.528489 AAAAGGCTAAGTAATCAATAGTCCAAA 57.472 29.630 0.00 0.00 0.00 3.28
192 193 9.174166 GAAAAGGCTAAGTAATCAATAGTCCAA 57.826 33.333 0.00 0.00 0.00 3.53
193 194 8.325787 TGAAAAGGCTAAGTAATCAATAGTCCA 58.674 33.333 0.00 0.00 0.00 4.02
194 195 8.732746 TGAAAAGGCTAAGTAATCAATAGTCC 57.267 34.615 0.00 0.00 0.00 3.85
228 229 5.185635 CAGAATAGGTGCTGGATTCCAAAAA 59.814 40.000 6.88 0.00 30.80 1.94
229 230 4.706476 CAGAATAGGTGCTGGATTCCAAAA 59.294 41.667 6.88 0.00 30.80 2.44
230 231 4.018506 TCAGAATAGGTGCTGGATTCCAAA 60.019 41.667 6.88 0.00 30.80 3.28
231 232 3.523157 TCAGAATAGGTGCTGGATTCCAA 59.477 43.478 6.88 0.00 30.80 3.53
232 233 3.114606 TCAGAATAGGTGCTGGATTCCA 58.885 45.455 5.05 5.05 31.21 3.53
233 234 3.845781 TCAGAATAGGTGCTGGATTCC 57.154 47.619 0.00 0.00 31.21 3.01
234 235 6.515272 TTTTTCAGAATAGGTGCTGGATTC 57.485 37.500 0.00 0.00 33.05 2.52
235 236 6.438425 ACATTTTTCAGAATAGGTGCTGGATT 59.562 34.615 0.00 0.00 33.05 3.01
236 237 5.954150 ACATTTTTCAGAATAGGTGCTGGAT 59.046 36.000 0.00 0.00 33.05 3.41
237 238 5.324409 ACATTTTTCAGAATAGGTGCTGGA 58.676 37.500 0.00 0.00 33.05 3.86
238 239 5.649782 ACATTTTTCAGAATAGGTGCTGG 57.350 39.130 0.00 0.00 33.05 4.85
239 240 7.094634 ACAGTACATTTTTCAGAATAGGTGCTG 60.095 37.037 18.50 18.50 42.27 4.41
240 241 6.942576 ACAGTACATTTTTCAGAATAGGTGCT 59.057 34.615 0.00 0.00 0.00 4.40
241 242 7.145932 ACAGTACATTTTTCAGAATAGGTGC 57.854 36.000 0.00 0.00 0.00 5.01
243 244 8.893727 GCATACAGTACATTTTTCAGAATAGGT 58.106 33.333 0.00 0.00 0.00 3.08
244 245 8.892723 TGCATACAGTACATTTTTCAGAATAGG 58.107 33.333 0.00 0.00 0.00 2.57
247 248 8.742777 ACATGCATACAGTACATTTTTCAGAAT 58.257 29.630 0.00 0.00 0.00 2.40
248 249 8.109705 ACATGCATACAGTACATTTTTCAGAA 57.890 30.769 0.00 0.00 0.00 3.02
249 250 7.686438 ACATGCATACAGTACATTTTTCAGA 57.314 32.000 0.00 0.00 0.00 3.27
250 251 8.746922 AAACATGCATACAGTACATTTTTCAG 57.253 30.769 0.00 0.00 0.00 3.02
255 256 9.627123 ACCTATAAACATGCATACAGTACATTT 57.373 29.630 0.00 0.00 0.00 2.32
256 257 9.627123 AACCTATAAACATGCATACAGTACATT 57.373 29.630 0.00 0.00 0.00 2.71
315 316 9.992910 GAGAAAAAGTACCTTTTAAGACGAAAA 57.007 29.630 2.18 0.00 41.98 2.29
316 317 9.165035 TGAGAAAAAGTACCTTTTAAGACGAAA 57.835 29.630 2.18 0.00 41.98 3.46
317 318 8.721019 TGAGAAAAAGTACCTTTTAAGACGAA 57.279 30.769 2.18 0.00 41.98 3.85
318 319 8.721019 TTGAGAAAAAGTACCTTTTAAGACGA 57.279 30.769 2.18 0.00 41.98 4.20
319 320 8.610035 ACTTGAGAAAAAGTACCTTTTAAGACG 58.390 33.333 13.77 3.48 41.98 4.18
350 351 7.565680 CCTAGATCTAGGCCTCTTTACAAAAA 58.434 38.462 31.21 0.00 45.36 1.94
351 352 7.125792 CCTAGATCTAGGCCTCTTTACAAAA 57.874 40.000 31.21 0.00 45.36 2.44
352 353 6.732896 CCTAGATCTAGGCCTCTTTACAAA 57.267 41.667 31.21 0.00 45.36 2.83
385 386 8.426251 GCAACTTTGTTTAGTTTTGTCGTAAAA 58.574 29.630 0.00 0.00 36.24 1.52
386 387 7.594015 TGCAACTTTGTTTAGTTTTGTCGTAAA 59.406 29.630 0.00 0.00 36.24 2.01
387 388 7.082602 TGCAACTTTGTTTAGTTTTGTCGTAA 58.917 30.769 0.00 0.00 36.24 3.18
388 389 6.609533 TGCAACTTTGTTTAGTTTTGTCGTA 58.390 32.000 0.00 0.00 36.24 3.43
389 390 5.462405 TGCAACTTTGTTTAGTTTTGTCGT 58.538 33.333 0.00 0.00 36.24 4.34
390 391 6.382821 TTGCAACTTTGTTTAGTTTTGTCG 57.617 33.333 0.00 0.00 36.24 4.35
391 392 6.672118 GCCTTGCAACTTTGTTTAGTTTTGTC 60.672 38.462 0.00 0.00 36.24 3.18
392 393 5.121611 GCCTTGCAACTTTGTTTAGTTTTGT 59.878 36.000 0.00 0.00 36.24 2.83
393 394 5.447144 GGCCTTGCAACTTTGTTTAGTTTTG 60.447 40.000 0.00 0.00 36.24 2.44
394 395 4.634004 GGCCTTGCAACTTTGTTTAGTTTT 59.366 37.500 0.00 0.00 36.24 2.43
395 396 4.188462 GGCCTTGCAACTTTGTTTAGTTT 58.812 39.130 0.00 0.00 36.24 2.66
396 397 3.431626 GGGCCTTGCAACTTTGTTTAGTT 60.432 43.478 0.84 0.00 38.87 2.24
397 398 2.102420 GGGCCTTGCAACTTTGTTTAGT 59.898 45.455 0.84 0.00 0.00 2.24
398 399 2.102252 TGGGCCTTGCAACTTTGTTTAG 59.898 45.455 4.53 0.00 0.00 1.85
399 400 2.111384 TGGGCCTTGCAACTTTGTTTA 58.889 42.857 4.53 0.00 0.00 2.01
400 401 0.908198 TGGGCCTTGCAACTTTGTTT 59.092 45.000 4.53 0.00 0.00 2.83
401 402 0.908198 TTGGGCCTTGCAACTTTGTT 59.092 45.000 4.53 0.00 0.00 2.83
402 403 0.177836 GTTGGGCCTTGCAACTTTGT 59.822 50.000 14.13 0.00 0.00 2.83
403 404 0.177604 TGTTGGGCCTTGCAACTTTG 59.822 50.000 19.88 0.00 0.00 2.77
404 405 0.908198 TTGTTGGGCCTTGCAACTTT 59.092 45.000 19.88 0.00 0.00 2.66
405 406 0.177836 GTTGTTGGGCCTTGCAACTT 59.822 50.000 19.88 0.00 38.41 2.66
406 407 0.975040 TGTTGTTGGGCCTTGCAACT 60.975 50.000 25.99 0.00 41.04 3.16
407 408 0.106521 ATGTTGTTGGGCCTTGCAAC 59.893 50.000 22.20 22.20 40.89 4.17
408 409 1.617850 CTATGTTGTTGGGCCTTGCAA 59.382 47.619 4.53 0.00 0.00 4.08
409 410 1.202989 TCTATGTTGTTGGGCCTTGCA 60.203 47.619 4.53 0.00 0.00 4.08
410 411 1.202348 GTCTATGTTGTTGGGCCTTGC 59.798 52.381 4.53 0.00 0.00 4.01
411 412 2.489329 CTGTCTATGTTGTTGGGCCTTG 59.511 50.000 4.53 0.00 0.00 3.61
412 413 2.555227 CCTGTCTATGTTGTTGGGCCTT 60.555 50.000 4.53 0.00 0.00 4.35
413 414 1.004745 CCTGTCTATGTTGTTGGGCCT 59.995 52.381 4.53 0.00 0.00 5.19
414 415 1.463674 CCTGTCTATGTTGTTGGGCC 58.536 55.000 0.00 0.00 0.00 5.80
415 416 1.463674 CCCTGTCTATGTTGTTGGGC 58.536 55.000 0.00 0.00 0.00 5.36
416 417 1.463674 GCCCTGTCTATGTTGTTGGG 58.536 55.000 0.00 0.00 36.41 4.12
417 418 1.463674 GGCCCTGTCTATGTTGTTGG 58.536 55.000 0.00 0.00 0.00 3.77
418 419 1.271871 TGGGCCCTGTCTATGTTGTTG 60.272 52.381 25.70 0.00 0.00 3.33
419 420 1.072266 TGGGCCCTGTCTATGTTGTT 58.928 50.000 25.70 0.00 0.00 2.83
420 421 1.072266 TTGGGCCCTGTCTATGTTGT 58.928 50.000 25.70 0.00 0.00 3.32
421 422 1.271871 TGTTGGGCCCTGTCTATGTTG 60.272 52.381 25.70 0.00 0.00 3.33
422 423 1.072266 TGTTGGGCCCTGTCTATGTT 58.928 50.000 25.70 0.00 0.00 2.71
423 424 1.072266 TTGTTGGGCCCTGTCTATGT 58.928 50.000 25.70 0.00 0.00 2.29
424 425 2.442236 ATTGTTGGGCCCTGTCTATG 57.558 50.000 25.70 0.00 0.00 2.23
425 426 2.443255 CCTATTGTTGGGCCCTGTCTAT 59.557 50.000 25.70 16.51 0.00 1.98
426 427 1.843851 CCTATTGTTGGGCCCTGTCTA 59.156 52.381 25.70 10.47 0.00 2.59
427 428 0.625849 CCTATTGTTGGGCCCTGTCT 59.374 55.000 25.70 6.51 0.00 3.41
428 429 0.623723 TCCTATTGTTGGGCCCTGTC 59.376 55.000 25.70 13.66 0.00 3.51
429 430 1.308877 ATCCTATTGTTGGGCCCTGT 58.691 50.000 25.70 6.76 0.00 4.00
430 431 2.034124 CAATCCTATTGTTGGGCCCTG 58.966 52.381 25.70 3.78 0.00 4.45
431 432 1.645919 ACAATCCTATTGTTGGGCCCT 59.354 47.619 25.70 4.09 0.00 5.19
432 433 1.756538 CACAATCCTATTGTTGGGCCC 59.243 52.381 17.59 17.59 0.00 5.80
433 434 2.427095 GACACAATCCTATTGTTGGGCC 59.573 50.000 0.00 0.00 32.00 5.80
434 435 2.097466 CGACACAATCCTATTGTTGGGC 59.903 50.000 2.59 0.00 32.00 5.36
435 436 3.126858 CACGACACAATCCTATTGTTGGG 59.873 47.826 2.59 0.00 34.93 4.12
436 437 3.126858 CCACGACACAATCCTATTGTTGG 59.873 47.826 2.59 5.02 0.00 3.77
437 438 3.426159 GCCACGACACAATCCTATTGTTG 60.426 47.826 2.59 0.03 0.00 3.33
438 439 2.747446 GCCACGACACAATCCTATTGTT 59.253 45.455 2.59 0.00 0.00 2.83
439 440 2.290008 TGCCACGACACAATCCTATTGT 60.290 45.455 0.00 0.00 0.00 2.71
440 441 2.352651 CTGCCACGACACAATCCTATTG 59.647 50.000 0.00 0.00 0.00 1.90
441 442 2.236146 TCTGCCACGACACAATCCTATT 59.764 45.455 0.00 0.00 0.00 1.73
442 443 1.831106 TCTGCCACGACACAATCCTAT 59.169 47.619 0.00 0.00 0.00 2.57
443 444 1.262417 TCTGCCACGACACAATCCTA 58.738 50.000 0.00 0.00 0.00 2.94
444 445 0.396435 TTCTGCCACGACACAATCCT 59.604 50.000 0.00 0.00 0.00 3.24
445 446 1.453155 ATTCTGCCACGACACAATCC 58.547 50.000 0.00 0.00 0.00 3.01
446 447 3.236816 CAAATTCTGCCACGACACAATC 58.763 45.455 0.00 0.00 0.00 2.67
447 448 2.622942 ACAAATTCTGCCACGACACAAT 59.377 40.909 0.00 0.00 0.00 2.71
448 449 2.020720 ACAAATTCTGCCACGACACAA 58.979 42.857 0.00 0.00 0.00 3.33
449 450 1.601903 GACAAATTCTGCCACGACACA 59.398 47.619 0.00 0.00 0.00 3.72
450 451 1.069227 GGACAAATTCTGCCACGACAC 60.069 52.381 0.00 0.00 0.00 3.67
451 452 1.202758 AGGACAAATTCTGCCACGACA 60.203 47.619 0.00 0.00 0.00 4.35
452 453 1.197721 CAGGACAAATTCTGCCACGAC 59.802 52.381 0.00 0.00 0.00 4.34
453 454 1.522668 CAGGACAAATTCTGCCACGA 58.477 50.000 0.00 0.00 0.00 4.35
454 455 0.523072 CCAGGACAAATTCTGCCACG 59.477 55.000 0.00 0.00 0.00 4.94
455 456 0.890683 CCCAGGACAAATTCTGCCAC 59.109 55.000 0.00 0.00 0.00 5.01
456 457 0.899717 GCCCAGGACAAATTCTGCCA 60.900 55.000 0.00 0.00 0.00 4.92
457 458 0.899717 TGCCCAGGACAAATTCTGCC 60.900 55.000 0.00 0.00 0.00 4.85
458 459 1.134907 CATGCCCAGGACAAATTCTGC 60.135 52.381 0.00 0.00 0.00 4.26
459 460 2.449464 TCATGCCCAGGACAAATTCTG 58.551 47.619 0.00 0.00 0.00 3.02
460 461 2.905415 TCATGCCCAGGACAAATTCT 57.095 45.000 0.00 0.00 0.00 2.40
461 462 2.482490 GCATCATGCCCAGGACAAATTC 60.482 50.000 0.00 0.00 37.42 2.17
462 463 1.483415 GCATCATGCCCAGGACAAATT 59.517 47.619 0.00 0.00 37.42 1.82
463 464 1.117150 GCATCATGCCCAGGACAAAT 58.883 50.000 0.00 0.00 37.42 2.32
464 465 0.040058 AGCATCATGCCCAGGACAAA 59.960 50.000 5.84 0.00 46.52 2.83
465 466 0.681887 CAGCATCATGCCCAGGACAA 60.682 55.000 5.84 0.00 46.52 3.18
466 467 1.077285 CAGCATCATGCCCAGGACA 60.077 57.895 5.84 0.00 46.52 4.02
467 468 1.826921 CCAGCATCATGCCCAGGAC 60.827 63.158 5.84 0.00 46.52 3.85
468 469 2.599032 CCAGCATCATGCCCAGGA 59.401 61.111 5.84 0.00 46.52 3.86
469 470 2.520982 CCCAGCATCATGCCCAGG 60.521 66.667 5.84 6.19 46.52 4.45
470 471 2.125326 CACCCAGCATCATGCCCAG 61.125 63.158 5.84 0.00 46.52 4.45
471 472 2.043752 CACCCAGCATCATGCCCA 60.044 61.111 5.84 0.00 46.52 5.36
472 473 3.534056 GCACCCAGCATCATGCCC 61.534 66.667 5.84 0.00 46.52 5.36
473 474 3.896133 CGCACCCAGCATCATGCC 61.896 66.667 5.84 0.00 46.52 4.40
474 475 3.896133 CCGCACCCAGCATCATGC 61.896 66.667 0.00 0.00 46.13 4.06
475 476 3.896133 GCCGCACCCAGCATCATG 61.896 66.667 0.00 0.00 46.13 3.07
476 477 3.726558 ATGCCGCACCCAGCATCAT 62.727 57.895 0.00 0.00 46.58 2.45
477 478 4.429522 ATGCCGCACCCAGCATCA 62.430 61.111 0.00 0.00 46.58 3.07
478 479 3.896133 CATGCCGCACCCAGCATC 61.896 66.667 0.00 0.00 46.58 3.91
489 490 1.298157 TTTCTGAAGCGTCCATGCCG 61.298 55.000 0.00 0.00 34.65 5.69
490 491 0.169009 GTTTCTGAAGCGTCCATGCC 59.831 55.000 0.00 0.00 34.65 4.40
491 492 0.179215 CGTTTCTGAAGCGTCCATGC 60.179 55.000 16.93 0.00 0.00 4.06
492 493 1.428448 TCGTTTCTGAAGCGTCCATG 58.572 50.000 22.64 0.00 0.00 3.66
493 494 2.163818 TTCGTTTCTGAAGCGTCCAT 57.836 45.000 22.64 0.00 0.00 3.41
494 495 1.942677 TTTCGTTTCTGAAGCGTCCA 58.057 45.000 22.64 8.65 0.00 4.02
495 496 3.328237 TTTTTCGTTTCTGAAGCGTCC 57.672 42.857 22.64 0.00 0.00 4.79
518 519 8.147642 TGTTGTGTCTTTGTTTGATTGTTTTT 57.852 26.923 0.00 0.00 0.00 1.94
519 520 7.095271 CCTGTTGTGTCTTTGTTTGATTGTTTT 60.095 33.333 0.00 0.00 0.00 2.43
520 521 6.368516 CCTGTTGTGTCTTTGTTTGATTGTTT 59.631 34.615 0.00 0.00 0.00 2.83
521 522 5.868801 CCTGTTGTGTCTTTGTTTGATTGTT 59.131 36.000 0.00 0.00 0.00 2.83
522 523 5.184864 TCCTGTTGTGTCTTTGTTTGATTGT 59.815 36.000 0.00 0.00 0.00 2.71
523 524 5.649557 TCCTGTTGTGTCTTTGTTTGATTG 58.350 37.500 0.00 0.00 0.00 2.67
524 525 5.913137 TCCTGTTGTGTCTTTGTTTGATT 57.087 34.783 0.00 0.00 0.00 2.57
525 526 5.913137 TTCCTGTTGTGTCTTTGTTTGAT 57.087 34.783 0.00 0.00 0.00 2.57
526 527 5.713792 TTTCCTGTTGTGTCTTTGTTTGA 57.286 34.783 0.00 0.00 0.00 2.69
527 528 6.423604 ACTTTTTCCTGTTGTGTCTTTGTTTG 59.576 34.615 0.00 0.00 0.00 2.93
528 529 6.521162 ACTTTTTCCTGTTGTGTCTTTGTTT 58.479 32.000 0.00 0.00 0.00 2.83
529 530 6.096673 ACTTTTTCCTGTTGTGTCTTTGTT 57.903 33.333 0.00 0.00 0.00 2.83
530 531 5.722021 ACTTTTTCCTGTTGTGTCTTTGT 57.278 34.783 0.00 0.00 0.00 2.83
531 532 6.393720 CAACTTTTTCCTGTTGTGTCTTTG 57.606 37.500 0.00 0.00 38.81 2.77
539 540 3.857093 CCGTTGACAACTTTTTCCTGTTG 59.143 43.478 16.02 0.00 46.19 3.33
540 541 3.119280 CCCGTTGACAACTTTTTCCTGTT 60.119 43.478 16.02 0.00 0.00 3.16
541 542 2.425668 CCCGTTGACAACTTTTTCCTGT 59.574 45.455 16.02 0.00 0.00 4.00
542 543 2.685897 TCCCGTTGACAACTTTTTCCTG 59.314 45.455 16.02 0.00 0.00 3.86
543 544 2.949644 CTCCCGTTGACAACTTTTTCCT 59.050 45.455 16.02 0.00 0.00 3.36
544 545 2.034179 CCTCCCGTTGACAACTTTTTCC 59.966 50.000 16.02 0.00 0.00 3.13
545 546 2.946990 TCCTCCCGTTGACAACTTTTTC 59.053 45.455 16.02 0.00 0.00 2.29
546 547 3.007473 TCCTCCCGTTGACAACTTTTT 57.993 42.857 16.02 0.00 0.00 1.94
547 548 2.721425 TCCTCCCGTTGACAACTTTT 57.279 45.000 16.02 0.00 0.00 2.27
548 549 2.951229 ATCCTCCCGTTGACAACTTT 57.049 45.000 16.02 0.00 0.00 2.66
549 550 2.105821 TGAATCCTCCCGTTGACAACTT 59.894 45.455 16.02 1.89 0.00 2.66
550 551 1.697432 TGAATCCTCCCGTTGACAACT 59.303 47.619 16.02 0.00 0.00 3.16
551 552 1.804748 GTGAATCCTCCCGTTGACAAC 59.195 52.381 8.34 8.34 0.00 3.32
552 553 1.418264 TGTGAATCCTCCCGTTGACAA 59.582 47.619 0.00 0.00 0.00 3.18
553 554 1.052617 TGTGAATCCTCCCGTTGACA 58.947 50.000 0.00 0.00 0.00 3.58
554 555 2.178912 TTGTGAATCCTCCCGTTGAC 57.821 50.000 0.00 0.00 0.00 3.18
555 556 2.039746 ACATTGTGAATCCTCCCGTTGA 59.960 45.455 0.00 0.00 0.00 3.18
556 557 2.436417 ACATTGTGAATCCTCCCGTTG 58.564 47.619 0.00 0.00 0.00 4.10
557 558 2.879103 ACATTGTGAATCCTCCCGTT 57.121 45.000 0.00 0.00 0.00 4.44
558 559 2.170607 CCTACATTGTGAATCCTCCCGT 59.829 50.000 0.00 0.00 0.00 5.28
559 560 2.434336 TCCTACATTGTGAATCCTCCCG 59.566 50.000 0.00 0.00 0.00 5.14
560 561 4.103153 TCATCCTACATTGTGAATCCTCCC 59.897 45.833 0.00 0.00 0.00 4.30
561 562 5.296151 TCATCCTACATTGTGAATCCTCC 57.704 43.478 0.00 0.00 0.00 4.30
562 563 6.294473 ACATCATCCTACATTGTGAATCCTC 58.706 40.000 0.00 0.00 0.00 3.71
563 564 6.126681 TGACATCATCCTACATTGTGAATCCT 60.127 38.462 0.00 0.00 0.00 3.24
564 565 6.057533 TGACATCATCCTACATTGTGAATCC 58.942 40.000 0.00 0.00 0.00 3.01
565 566 6.988580 TCTGACATCATCCTACATTGTGAATC 59.011 38.462 0.00 0.00 0.00 2.52
566 567 6.892485 TCTGACATCATCCTACATTGTGAAT 58.108 36.000 0.00 0.00 0.00 2.57
567 568 6.298441 TCTGACATCATCCTACATTGTGAA 57.702 37.500 0.00 0.00 0.00 3.18
568 569 5.937975 TCTGACATCATCCTACATTGTGA 57.062 39.130 0.00 0.00 0.00 3.58
569 570 6.018180 CACATCTGACATCATCCTACATTGTG 60.018 42.308 0.00 0.00 0.00 3.33
570 571 6.053650 CACATCTGACATCATCCTACATTGT 58.946 40.000 0.00 0.00 0.00 2.71
571 572 6.285990 TCACATCTGACATCATCCTACATTG 58.714 40.000 0.00 0.00 0.00 2.82
572 573 6.464039 CCTCACATCTGACATCATCCTACATT 60.464 42.308 0.00 0.00 0.00 2.71
573 574 5.011840 CCTCACATCTGACATCATCCTACAT 59.988 44.000 0.00 0.00 0.00 2.29
574 575 4.343239 CCTCACATCTGACATCATCCTACA 59.657 45.833 0.00 0.00 0.00 2.74
575 576 4.343526 ACCTCACATCTGACATCATCCTAC 59.656 45.833 0.00 0.00 0.00 3.18
576 577 4.550669 ACCTCACATCTGACATCATCCTA 58.449 43.478 0.00 0.00 0.00 2.94
577 578 3.382278 ACCTCACATCTGACATCATCCT 58.618 45.455 0.00 0.00 0.00 3.24
578 579 3.834489 ACCTCACATCTGACATCATCC 57.166 47.619 0.00 0.00 0.00 3.51
579 580 8.530311 AGATAATACCTCACATCTGACATCATC 58.470 37.037 0.00 0.00 0.00 2.92
580 581 8.433249 AGATAATACCTCACATCTGACATCAT 57.567 34.615 0.00 0.00 0.00 2.45
581 582 7.506938 TGAGATAATACCTCACATCTGACATCA 59.493 37.037 0.00 0.00 35.89 3.07
582 583 7.890515 TGAGATAATACCTCACATCTGACATC 58.109 38.462 0.00 0.00 35.89 3.06
583 584 7.846101 TGAGATAATACCTCACATCTGACAT 57.154 36.000 0.00 0.00 35.89 3.06
608 609 7.309499 GGGGTCTGACTATGTTACATCTAGATG 60.309 44.444 27.63 27.63 44.15 2.90
609 610 6.722129 GGGGTCTGACTATGTTACATCTAGAT 59.278 42.308 0.00 0.00 0.00 1.98
610 611 6.069331 GGGGTCTGACTATGTTACATCTAGA 58.931 44.000 0.00 0.00 0.00 2.43
611 612 6.071984 AGGGGTCTGACTATGTTACATCTAG 58.928 44.000 0.00 0.00 0.00 2.43
612 613 6.027025 AGGGGTCTGACTATGTTACATCTA 57.973 41.667 0.00 0.00 0.00 1.98
613 614 4.884961 AGGGGTCTGACTATGTTACATCT 58.115 43.478 0.00 0.00 0.00 2.90
614 615 5.279056 GCTAGGGGTCTGACTATGTTACATC 60.279 48.000 0.00 0.00 0.00 3.06
615 616 4.589374 GCTAGGGGTCTGACTATGTTACAT 59.411 45.833 7.85 2.58 0.00 2.29
616 617 3.958798 GCTAGGGGTCTGACTATGTTACA 59.041 47.826 7.85 0.00 0.00 2.41
617 618 3.958798 TGCTAGGGGTCTGACTATGTTAC 59.041 47.826 7.85 0.00 0.00 2.50
618 619 4.259933 TGCTAGGGGTCTGACTATGTTA 57.740 45.455 7.85 0.00 0.00 2.41
619 620 3.116096 TGCTAGGGGTCTGACTATGTT 57.884 47.619 7.85 0.00 0.00 2.71
620 621 2.848678 TGCTAGGGGTCTGACTATGT 57.151 50.000 7.85 0.00 0.00 2.29
621 622 4.696479 AAATGCTAGGGGTCTGACTATG 57.304 45.455 7.85 0.00 0.00 2.23
622 623 4.475016 ACAAAATGCTAGGGGTCTGACTAT 59.525 41.667 7.85 0.00 0.00 2.12
623 624 3.844211 ACAAAATGCTAGGGGTCTGACTA 59.156 43.478 7.85 0.00 0.00 2.59
624 625 2.644798 ACAAAATGCTAGGGGTCTGACT 59.355 45.455 7.85 0.00 0.00 3.41
625 626 3.073274 ACAAAATGCTAGGGGTCTGAC 57.927 47.619 0.00 0.00 0.00 3.51
626 627 3.844211 AGTACAAAATGCTAGGGGTCTGA 59.156 43.478 0.00 0.00 0.00 3.27
627 628 4.080863 AGAGTACAAAATGCTAGGGGTCTG 60.081 45.833 0.00 0.00 0.00 3.51
628 629 4.104831 AGAGTACAAAATGCTAGGGGTCT 58.895 43.478 0.00 0.00 0.00 3.85
629 630 4.443621 GAGAGTACAAAATGCTAGGGGTC 58.556 47.826 0.00 0.00 0.00 4.46
630 631 3.118738 CGAGAGTACAAAATGCTAGGGGT 60.119 47.826 0.00 0.00 0.00 4.95
631 632 3.132289 TCGAGAGTACAAAATGCTAGGGG 59.868 47.826 0.00 0.00 0.00 4.79
632 633 4.386867 TCGAGAGTACAAAATGCTAGGG 57.613 45.455 0.00 0.00 0.00 3.53
633 634 6.721571 TTTTCGAGAGTACAAAATGCTAGG 57.278 37.500 0.00 0.00 0.00 3.02
655 656 5.887214 ACAAAAATGCTAGGGGTCTTTTT 57.113 34.783 0.00 0.00 31.19 1.94
656 657 6.496911 ACATACAAAAATGCTAGGGGTCTTTT 59.503 34.615 0.00 0.00 0.00 2.27
657 658 6.016555 ACATACAAAAATGCTAGGGGTCTTT 58.983 36.000 0.00 0.00 0.00 2.52
658 659 5.580022 ACATACAAAAATGCTAGGGGTCTT 58.420 37.500 0.00 0.00 0.00 3.01
659 660 5.193099 ACATACAAAAATGCTAGGGGTCT 57.807 39.130 0.00 0.00 0.00 3.85
660 661 6.459710 GCTTACATACAAAAATGCTAGGGGTC 60.460 42.308 0.00 0.00 0.00 4.46
661 662 5.359860 GCTTACATACAAAAATGCTAGGGGT 59.640 40.000 0.00 0.00 0.00 4.95
662 663 5.359576 TGCTTACATACAAAAATGCTAGGGG 59.640 40.000 0.00 0.00 0.00 4.79
663 664 6.449635 TGCTTACATACAAAAATGCTAGGG 57.550 37.500 0.00 0.00 0.00 3.53
664 665 6.919662 CCATGCTTACATACAAAAATGCTAGG 59.080 38.462 0.00 0.00 33.67 3.02
665 666 6.919662 CCCATGCTTACATACAAAAATGCTAG 59.080 38.462 0.00 0.00 33.67 3.42
666 667 6.379703 ACCCATGCTTACATACAAAAATGCTA 59.620 34.615 0.00 0.00 33.67 3.49
667 668 5.187576 ACCCATGCTTACATACAAAAATGCT 59.812 36.000 0.00 0.00 33.67 3.79
668 669 5.418676 ACCCATGCTTACATACAAAAATGC 58.581 37.500 0.00 0.00 33.67 3.56
669 670 7.903995 AAACCCATGCTTACATACAAAAATG 57.096 32.000 0.00 0.00 33.67 2.32
670 671 9.598517 CATAAACCCATGCTTACATACAAAAAT 57.401 29.630 0.00 0.00 33.67 1.82
671 672 8.037758 CCATAAACCCATGCTTACATACAAAAA 58.962 33.333 0.00 0.00 33.67 1.94
672 673 7.397476 TCCATAAACCCATGCTTACATACAAAA 59.603 33.333 0.00 0.00 33.67 2.44
673 674 6.892456 TCCATAAACCCATGCTTACATACAAA 59.108 34.615 0.00 0.00 33.67 2.83
674 675 6.427441 TCCATAAACCCATGCTTACATACAA 58.573 36.000 0.00 0.00 33.67 2.41
675 676 6.007485 TCCATAAACCCATGCTTACATACA 57.993 37.500 0.00 0.00 33.67 2.29
676 677 5.473504 CCTCCATAAACCCATGCTTACATAC 59.526 44.000 0.00 0.00 33.67 2.39
677 678 5.457487 CCCTCCATAAACCCATGCTTACATA 60.457 44.000 0.00 0.00 33.67 2.29
678 679 4.473444 CCTCCATAAACCCATGCTTACAT 58.527 43.478 0.00 0.00 36.79 2.29
679 680 3.372566 CCCTCCATAAACCCATGCTTACA 60.373 47.826 0.00 0.00 0.00 2.41
680 681 3.117663 TCCCTCCATAAACCCATGCTTAC 60.118 47.826 0.00 0.00 0.00 2.34
681 682 3.127250 TCCCTCCATAAACCCATGCTTA 58.873 45.455 0.00 0.00 0.00 3.09
682 683 1.929494 TCCCTCCATAAACCCATGCTT 59.071 47.619 0.00 0.00 0.00 3.91
683 684 1.496429 CTCCCTCCATAAACCCATGCT 59.504 52.381 0.00 0.00 0.00 3.79
684 685 1.215423 ACTCCCTCCATAAACCCATGC 59.785 52.381 0.00 0.00 0.00 4.06
710 716 0.316841 TTTGTCGGAGCAAATTGGGC 59.683 50.000 0.00 0.00 33.91 5.36
735 741 2.608623 GGCCGGTATAGGGGTTACTTA 58.391 52.381 1.90 0.00 0.00 2.24
737 743 0.829182 CGGCCGGTATAGGGGTTACT 60.829 60.000 20.10 0.00 0.00 2.24
748 754 2.897207 CTGTTCATCCGGCCGGTA 59.103 61.111 41.57 28.68 36.47 4.02
757 763 4.192317 CCCTACTAACAAGGCTGTTCATC 58.808 47.826 5.75 0.00 42.25 2.92
765 771 1.907255 ACTGACCCCTACTAACAAGGC 59.093 52.381 0.00 0.00 32.34 4.35
846 852 0.110486 ATTTGGCCGGTTCTGACTGT 59.890 50.000 1.90 0.00 0.00 3.55
858 875 4.263112 GGAGAGAGGGTTCTATATTTGGCC 60.263 50.000 0.00 0.00 32.53 5.36
871 888 1.454111 CGGATCACGGAGAGAGGGT 60.454 63.158 0.00 0.00 39.42 4.34
874 891 1.715862 TTCGCGGATCACGGAGAGAG 61.716 60.000 6.13 0.00 44.51 3.20
875 892 1.101635 ATTCGCGGATCACGGAGAGA 61.102 55.000 6.13 0.00 44.51 3.10
922 939 2.397413 CTTGCAAGTGGACCCCGTCT 62.397 60.000 18.65 0.00 32.47 4.18
924 941 1.412453 TACTTGCAAGTGGACCCCGT 61.412 55.000 36.50 14.01 40.07 5.28
971 988 3.667430 CGTCGTCTTCTTCAGTAGTGGTC 60.667 52.174 0.00 0.00 0.00 4.02
977 994 4.753610 TCTTCTTCGTCGTCTTCTTCAGTA 59.246 41.667 0.00 0.00 0.00 2.74
989 1006 1.878522 CCCGCCATCTTCTTCGTCG 60.879 63.158 0.00 0.00 0.00 5.12
990 1007 2.174319 GCCCGCCATCTTCTTCGTC 61.174 63.158 0.00 0.00 0.00 4.20
991 1008 2.125106 GCCCGCCATCTTCTTCGT 60.125 61.111 0.00 0.00 0.00 3.85
992 1009 2.897350 GGCCCGCCATCTTCTTCG 60.897 66.667 0.00 0.00 35.81 3.79
993 1010 2.897350 CGGCCCGCCATCTTCTTC 60.897 66.667 6.52 0.00 35.37 2.87
994 1011 4.489771 CCGGCCCGCCATCTTCTT 62.490 66.667 6.52 0.00 35.37 2.52
1089 1106 7.532546 CGAAAGAAACATGTAACGATTTGCTTA 59.467 33.333 0.00 0.00 0.00 3.09
1102 1136 6.640907 GTGAAATAAAGGCGAAAGAAACATGT 59.359 34.615 0.00 0.00 0.00 3.21
1114 1148 2.223249 CCATGACGGTGAAATAAAGGCG 60.223 50.000 0.00 0.00 0.00 5.52
1120 1154 4.141505 ACATCCATCCATGACGGTGAAATA 60.142 41.667 0.00 0.00 35.57 1.40
1136 1170 1.935873 CAAACGCGAGATGACATCCAT 59.064 47.619 15.93 0.00 38.43 3.41
1137 1171 1.358877 CAAACGCGAGATGACATCCA 58.641 50.000 15.93 0.00 0.00 3.41
1138 1172 0.652592 CCAAACGCGAGATGACATCC 59.347 55.000 15.93 3.17 0.00 3.51
1140 1174 1.066858 AGACCAAACGCGAGATGACAT 60.067 47.619 15.93 0.00 0.00 3.06
1141 1175 0.317160 AGACCAAACGCGAGATGACA 59.683 50.000 15.93 0.00 0.00 3.58
1142 1176 0.716108 CAGACCAAACGCGAGATGAC 59.284 55.000 15.93 6.39 0.00 3.06
1143 1177 0.601057 TCAGACCAAACGCGAGATGA 59.399 50.000 15.93 3.91 0.00 2.92
1144 1178 0.716108 GTCAGACCAAACGCGAGATG 59.284 55.000 15.93 8.43 0.00 2.90
1145 1179 0.732880 CGTCAGACCAAACGCGAGAT 60.733 55.000 15.93 0.00 31.48 2.75
1146 1180 1.371267 CGTCAGACCAAACGCGAGA 60.371 57.895 15.93 0.00 31.48 4.04
1147 1181 0.732880 ATCGTCAGACCAAACGCGAG 60.733 55.000 15.93 1.33 38.72 5.03
1148 1182 1.006825 CATCGTCAGACCAAACGCGA 61.007 55.000 15.93 0.00 38.72 5.87
1149 1183 1.006825 TCATCGTCAGACCAAACGCG 61.007 55.000 3.53 3.53 38.72 6.01
1150 1184 1.061131 CATCATCGTCAGACCAAACGC 59.939 52.381 0.00 0.00 38.72 4.84
1151 1185 1.061131 GCATCATCGTCAGACCAAACG 59.939 52.381 0.00 0.00 40.17 3.60
1152 1186 2.076100 TGCATCATCGTCAGACCAAAC 58.924 47.619 0.00 0.00 0.00 2.93
1153 1187 2.470983 TGCATCATCGTCAGACCAAA 57.529 45.000 0.00 0.00 0.00 3.28
1154 1188 2.282407 CATGCATCATCGTCAGACCAA 58.718 47.619 0.00 0.00 0.00 3.67
1155 1189 1.944032 CATGCATCATCGTCAGACCA 58.056 50.000 0.00 0.00 0.00 4.02
1156 1190 0.585357 GCATGCATCATCGTCAGACC 59.415 55.000 14.21 0.00 0.00 3.85
1157 1191 1.292992 TGCATGCATCATCGTCAGAC 58.707 50.000 18.46 0.00 0.00 3.51
1158 1192 2.249844 ATGCATGCATCATCGTCAGA 57.750 45.000 27.46 0.00 29.42 3.27
1286 1320 3.064987 CTTGCTCCCGACGACCGAT 62.065 63.158 0.00 0.00 41.76 4.18
1289 1323 4.373116 TGCTTGCTCCCGACGACC 62.373 66.667 0.00 0.00 0.00 4.79
1339 1373 3.837213 CGAAGCCATTGATGTTCTTGT 57.163 42.857 2.00 0.00 0.00 3.16
1364 1398 1.611519 CCACCTCCTCCTCGAGATAC 58.388 60.000 15.71 0.00 30.97 2.24
1387 1421 0.698238 TGCCTTACTTGCCATCTGGT 59.302 50.000 0.00 0.00 37.57 4.00
1405 1439 2.148446 TGAAGGAATGGGAATGGCTG 57.852 50.000 0.00 0.00 0.00 4.85
1407 1441 4.218312 AGTAATGAAGGAATGGGAATGGC 58.782 43.478 0.00 0.00 0.00 4.40
1414 1448 7.337689 TGATGTTCTTGAGTAATGAAGGAATGG 59.662 37.037 0.00 0.00 0.00 3.16
1415 1449 8.272545 TGATGTTCTTGAGTAATGAAGGAATG 57.727 34.615 0.00 0.00 0.00 2.67
1420 1454 6.971184 GCCATTGATGTTCTTGAGTAATGAAG 59.029 38.462 0.00 0.00 0.00 3.02
1426 1460 4.701651 CCAAGCCATTGATGTTCTTGAGTA 59.298 41.667 17.40 0.00 38.83 2.59
1428 1462 3.675228 GCCAAGCCATTGATGTTCTTGAG 60.675 47.826 17.40 11.81 38.83 3.02
1445 1479 4.250464 TGTAAAAGAGATACGTGGCCAAG 58.750 43.478 17.83 17.83 0.00 3.61
1447 1481 3.259876 ACTGTAAAAGAGATACGTGGCCA 59.740 43.478 0.00 0.00 0.00 5.36
1448 1482 3.858247 ACTGTAAAAGAGATACGTGGCC 58.142 45.455 0.00 0.00 0.00 5.36
1449 1483 5.163884 GGAAACTGTAAAAGAGATACGTGGC 60.164 44.000 0.00 0.00 0.00 5.01
1450 1484 5.350640 GGGAAACTGTAAAAGAGATACGTGG 59.649 44.000 0.00 0.00 0.00 4.94
1451 1485 5.350640 GGGGAAACTGTAAAAGAGATACGTG 59.649 44.000 0.00 0.00 0.00 4.49
1452 1486 5.247792 AGGGGAAACTGTAAAAGAGATACGT 59.752 40.000 0.00 0.00 0.00 3.57
1454 1488 7.166167 TCAAGGGGAAACTGTAAAAGAGATAC 58.834 38.462 0.00 0.00 0.00 2.24
1456 1490 6.200878 TCAAGGGGAAACTGTAAAAGAGAT 57.799 37.500 0.00 0.00 0.00 2.75
1457 1491 5.640158 TCAAGGGGAAACTGTAAAAGAGA 57.360 39.130 0.00 0.00 0.00 3.10
1458 1492 6.490040 TCAATCAAGGGGAAACTGTAAAAGAG 59.510 38.462 0.00 0.00 0.00 2.85
1459 1493 6.369629 TCAATCAAGGGGAAACTGTAAAAGA 58.630 36.000 0.00 0.00 0.00 2.52
1460 1494 6.648879 TCAATCAAGGGGAAACTGTAAAAG 57.351 37.500 0.00 0.00 0.00 2.27
1461 1495 7.610580 AATCAATCAAGGGGAAACTGTAAAA 57.389 32.000 0.00 0.00 0.00 1.52
1462 1496 8.581578 GTTAATCAATCAAGGGGAAACTGTAAA 58.418 33.333 0.00 0.00 0.00 2.01
1463 1497 7.947890 AGTTAATCAATCAAGGGGAAACTGTAA 59.052 33.333 0.00 0.00 0.00 2.41
1464 1498 7.393234 CAGTTAATCAATCAAGGGGAAACTGTA 59.607 37.037 0.00 0.00 37.55 2.74
1465 1499 6.209391 CAGTTAATCAATCAAGGGGAAACTGT 59.791 38.462 0.00 0.00 37.55 3.55
1466 1500 6.434028 TCAGTTAATCAATCAAGGGGAAACTG 59.566 38.462 0.00 0.00 41.50 3.16
1467 1501 6.552008 TCAGTTAATCAATCAAGGGGAAACT 58.448 36.000 0.00 0.00 0.00 2.66
1468 1502 6.834168 TCAGTTAATCAATCAAGGGGAAAC 57.166 37.500 0.00 0.00 0.00 2.78
1469 1503 7.673504 TCAATCAGTTAATCAATCAAGGGGAAA 59.326 33.333 0.00 0.00 0.00 3.13
1470 1504 7.181361 TCAATCAGTTAATCAATCAAGGGGAA 58.819 34.615 0.00 0.00 0.00 3.97
1471 1505 6.730447 TCAATCAGTTAATCAATCAAGGGGA 58.270 36.000 0.00 0.00 0.00 4.81
1472 1506 7.592885 ATCAATCAGTTAATCAATCAAGGGG 57.407 36.000 0.00 0.00 0.00 4.79
1473 1507 7.924412 CCAATCAATCAGTTAATCAATCAAGGG 59.076 37.037 0.00 0.00 0.00 3.95
1474 1508 8.472413 ACCAATCAATCAGTTAATCAATCAAGG 58.528 33.333 0.00 0.00 0.00 3.61
1475 1509 9.865321 AACCAATCAATCAGTTAATCAATCAAG 57.135 29.630 0.00 0.00 0.00 3.02
1495 1529 1.113788 CCATCAATCGCCCAACCAAT 58.886 50.000 0.00 0.00 0.00 3.16
1583 1621 0.105862 CCATGTCCATGAAGCCCCAT 60.106 55.000 8.82 0.00 41.20 4.00
1853 1891 3.041940 GTCCAGTTGCCGTCCACG 61.042 66.667 0.00 0.00 39.44 4.94
1997 2035 2.108168 GTCCAGCAGACCCTGTATACA 58.892 52.381 5.25 5.25 39.84 2.29
2123 2161 1.153549 GTGGAAGTAGGAGCTGGCG 60.154 63.158 0.00 0.00 0.00 5.69
2570 2608 4.812476 TTGCCGTCCATCTCGCCG 62.812 66.667 0.00 0.00 0.00 6.46
2582 2620 2.480555 GCTTGGATGTCGTTGCCG 59.519 61.111 0.00 0.00 0.00 5.69
2720 2758 0.684535 TGGATGGCGAGTTCTTGACA 59.315 50.000 0.00 0.00 0.00 3.58
2837 2875 2.181021 GTGGGGCTGACGTACTCG 59.819 66.667 0.00 0.00 43.34 4.18
2930 2968 2.204136 AGGAGGCCCATGACACCA 60.204 61.111 0.00 0.00 33.88 4.17
3035 3073 3.333189 CCGTCCATCTCGCGCATG 61.333 66.667 8.75 6.03 0.00 4.06
3396 3434 1.949631 CGCCGGCCTTCTCGAATAC 60.950 63.158 23.46 0.00 0.00 1.89
3555 3593 6.238897 CCTTGAGCTACACACCACAAAATTAA 60.239 38.462 0.00 0.00 0.00 1.40
3556 3594 5.240623 CCTTGAGCTACACACCACAAAATTA 59.759 40.000 0.00 0.00 0.00 1.40
3557 3595 4.037923 CCTTGAGCTACACACCACAAAATT 59.962 41.667 0.00 0.00 0.00 1.82
3558 3596 3.569701 CCTTGAGCTACACACCACAAAAT 59.430 43.478 0.00 0.00 0.00 1.82
3575 3613 1.699634 CTGGACACTTCCTTCCCTTGA 59.300 52.381 0.00 0.00 43.31 3.02
3622 3660 9.041354 ACCTAAACTCTTCTCATTCTCAGTAAT 57.959 33.333 0.00 0.00 0.00 1.89
3638 3676 5.248705 CCAGGAGACCTAAAACCTAAACTCT 59.751 44.000 0.00 0.00 29.64 3.24
3654 3694 3.063588 GCGTTTATTAGCAACCAGGAGAC 59.936 47.826 0.00 0.00 0.00 3.36
3714 3758 7.015292 GGGGGAATCTACAAGAAAGAAAACTTT 59.985 37.037 0.00 0.00 0.00 2.66
3732 3776 5.360999 CCACAATTTCTAGAAAGGGGGAATC 59.639 44.000 25.96 0.00 35.38 2.52
3749 3793 4.779696 AGAAAATTGCACCAACCACAATT 58.220 34.783 0.00 0.00 43.84 2.32
3760 3804 5.005682 GGAGAACACACAAAGAAAATTGCAC 59.994 40.000 0.00 0.00 33.52 4.57
3763 3807 6.799512 AGAGGAGAACACACAAAGAAAATTG 58.200 36.000 0.00 0.00 36.37 2.32
3774 3818 2.557490 ACCGAACTAGAGGAGAACACAC 59.443 50.000 0.00 0.00 0.00 3.82
3789 3833 9.791838 GAACAATATTTTCAATTGAAACCGAAC 57.208 29.630 28.78 13.94 43.01 3.95
3890 3934 1.173913 CCCTCCCGTGGAATTTTGAC 58.826 55.000 0.00 0.00 0.00 3.18
3891 3935 0.039035 CCCCTCCCGTGGAATTTTGA 59.961 55.000 0.00 0.00 0.00 2.69
3892 3936 0.039035 TCCCCTCCCGTGGAATTTTG 59.961 55.000 0.00 0.00 0.00 2.44
3895 3939 0.781278 TTTTCCCCTCCCGTGGAATT 59.219 50.000 0.00 0.00 40.22 2.17
3902 3946 0.972883 TGCAAAATTTTCCCCTCCCG 59.027 50.000 0.00 0.00 0.00 5.14
3907 3951 3.252944 CACCAACATGCAAAATTTTCCCC 59.747 43.478 0.00 0.00 0.00 4.81
3920 3964 5.953183 TGCTCTATTTTAAGCACCAACATG 58.047 37.500 0.00 0.00 43.30 3.21
3942 3986 9.546428 TTGGCGTTGATATCCTTCATATATATG 57.454 33.333 15.47 15.47 35.04 1.78
3964 4008 3.443681 TGCTAGTTCAATAGGCTTTTGGC 59.556 43.478 16.08 11.80 46.43 4.52
3982 4026 9.617523 GTATGTTAACCTTTTTAGGGTATGCTA 57.382 33.333 2.48 0.00 35.83 3.49
4006 4050 5.933463 ACTTTCCGTTCGATGGTAATTTGTA 59.067 36.000 4.33 0.00 0.00 2.41
4025 4123 7.224753 GTCCCTTCTTTTCCATTTTGAACTTTC 59.775 37.037 0.00 0.00 0.00 2.62
4026 4124 7.047891 GTCCCTTCTTTTCCATTTTGAACTTT 58.952 34.615 0.00 0.00 0.00 2.66
4028 4126 5.070446 GGTCCCTTCTTTTCCATTTTGAACT 59.930 40.000 0.00 0.00 0.00 3.01
4033 4131 4.765339 CGTAGGTCCCTTCTTTTCCATTTT 59.235 41.667 0.00 0.00 0.00 1.82
4055 4154 3.742882 CACTCCACCATATATTGCAGACG 59.257 47.826 0.00 0.00 0.00 4.18
4074 4173 7.122715 AGATAGAGTCCAAAGAGTATGACACT 58.877 38.462 0.00 0.00 41.47 3.55
4075 4174 7.341445 AGATAGAGTCCAAAGAGTATGACAC 57.659 40.000 0.00 0.00 0.00 3.67
4078 4177 9.035890 TGAAAAGATAGAGTCCAAAGAGTATGA 57.964 33.333 0.00 0.00 0.00 2.15
4079 4178 9.092876 GTGAAAAGATAGAGTCCAAAGAGTATG 57.907 37.037 0.00 0.00 0.00 2.39
4105 4205 1.339631 TGGTCATAAACTTGGGAGGCG 60.340 52.381 0.00 0.00 0.00 5.52
4135 4235 3.840666 AGCCCTGTCAATACTCTCAAGAA 59.159 43.478 0.00 0.00 0.00 2.52
4137 4237 3.902881 AGCCCTGTCAATACTCTCAAG 57.097 47.619 0.00 0.00 0.00 3.02
4145 4245 3.398318 TGACCTCTAGCCCTGTCAATA 57.602 47.619 0.00 0.00 34.98 1.90
4152 4252 2.769209 ACAATCATGACCTCTAGCCCT 58.231 47.619 0.00 0.00 0.00 5.19
4160 4260 3.251729 GCATATCGCAACAATCATGACCT 59.748 43.478 0.00 0.00 41.79 3.85
4167 4267 3.736213 CATACCGCATATCGCAACAATC 58.264 45.455 0.00 0.00 42.60 2.67
4198 4298 4.037690 GTCAGTCACAATGTTGCAAAGAC 58.962 43.478 0.00 3.18 0.00 3.01
4220 4320 5.695363 CCTATGAGCTCACATGTCTGTATTG 59.305 44.000 20.97 0.00 33.14 1.90
4224 4324 2.158986 GCCTATGAGCTCACATGTCTGT 60.159 50.000 20.97 2.59 35.44 3.41
4237 4337 4.248691 TCATCATCGTCTTGCCTATGAG 57.751 45.455 0.00 0.00 32.25 2.90
4245 4345 5.404667 CAGATGTGGTATCATCATCGTCTTG 59.595 44.000 10.80 3.62 44.46 3.02
4246 4346 5.510349 CCAGATGTGGTATCATCATCGTCTT 60.510 44.000 0.00 0.00 44.46 3.01
4260 4360 3.375699 CCTAAGTACCTCCAGATGTGGT 58.624 50.000 9.03 0.00 45.28 4.16
4299 4399 1.463444 GCAAGCCTACCAAGTACAACG 59.537 52.381 0.00 0.00 0.00 4.10
4332 4432 7.119553 ACCGATAAACAAAGATTACGGCTAAAA 59.880 33.333 0.00 0.00 42.29 1.52
4336 4436 4.510571 ACCGATAAACAAAGATTACGGCT 58.489 39.130 0.00 0.00 42.29 5.52
4339 4439 8.697067 CATACCTACCGATAAACAAAGATTACG 58.303 37.037 0.00 0.00 0.00 3.18
4345 4445 6.483687 GCAACATACCTACCGATAAACAAAG 58.516 40.000 0.00 0.00 0.00 2.77
4347 4447 4.567558 CGCAACATACCTACCGATAAACAA 59.432 41.667 0.00 0.00 0.00 2.83
4409 4509 1.497286 TGGCTGGAAAACCCTACAAGT 59.503 47.619 0.00 0.00 35.38 3.16
4440 4540 5.133221 CCAAGGGAGAAATGATCCGTTTAT 58.867 41.667 0.00 0.00 41.69 1.40
4462 4562 7.063898 GCCAAAGAAATTTCAGAAAATCTAGCC 59.936 37.037 19.99 0.23 33.93 3.93
4464 4564 9.480053 TTGCCAAAGAAATTTCAGAAAATCTAG 57.520 29.630 19.99 9.53 33.93 2.43
4466 4566 8.913487 ATTGCCAAAGAAATTTCAGAAAATCT 57.087 26.923 19.99 4.39 33.93 2.40
4516 4616 8.674607 GTGTACTCGGATAAATTCCTTTTTGAT 58.325 33.333 0.00 0.00 42.99 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.