Multiple sequence alignment - TraesCS5B01G024200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G024200 chr5B 100.000 5736 0 0 1 5736 22507002 22501267 0.000000e+00 10593.0
1 TraesCS5B01G024200 chr5B 82.888 748 90 17 4637 5379 490421398 490420684 6.270000e-179 638.0
2 TraesCS5B01G024200 chr5B 95.588 136 5 1 2317 2451 459487897 459488032 3.480000e-52 217.0
3 TraesCS5B01G024200 chr5B 89.157 166 5 8 3178 3331 6247614 6247450 1.630000e-45 195.0
4 TraesCS5B01G024200 chr5D 91.395 2359 121 38 1 2326 30425147 30422838 0.000000e+00 3157.0
5 TraesCS5B01G024200 chr5D 85.082 1287 62 42 3182 4422 30422186 30420984 0.000000e+00 1194.0
6 TraesCS5B01G024200 chr5D 94.324 599 30 4 5139 5736 30419882 30419287 0.000000e+00 915.0
7 TraesCS5B01G024200 chr5D 85.051 689 43 22 2450 3129 30422839 30422202 0.000000e+00 647.0
8 TraesCS5B01G024200 chr5D 87.086 302 28 7 1067 1367 320237284 320237575 1.190000e-86 331.0
9 TraesCS5B01G024200 chr5D 94.340 106 4 2 4415 4518 30420837 30420732 1.650000e-35 161.0
10 TraesCS5B01G024200 chr5D 87.603 121 13 1 5261 5381 385898996 385899114 7.750000e-29 139.0
11 TraesCS5B01G024200 chr5D 84.672 137 9 1 633 757 30424566 30424430 6.030000e-25 126.0
12 TraesCS5B01G024200 chr2B 88.117 1885 116 46 6 1829 151106658 151104821 0.000000e+00 2141.0
13 TraesCS5B01G024200 chr2B 90.014 711 65 5 4545 5254 708862396 708861691 0.000000e+00 915.0
14 TraesCS5B01G024200 chr2B 84.487 838 89 11 4547 5381 757021270 757020471 0.000000e+00 789.0
15 TraesCS5B01G024200 chr2B 98.065 155 3 0 1888 2042 151104827 151104673 2.630000e-68 270.0
16 TraesCS5B01G024200 chr2B 97.674 129 3 0 2325 2453 550044179 550044051 7.480000e-54 222.0
17 TraesCS5B01G024200 chr2B 89.157 166 5 8 3178 3331 26982854 26983018 1.630000e-45 195.0
18 TraesCS5B01G024200 chr2B 89.441 161 4 5 3183 3331 706575576 706575417 2.110000e-44 191.0
19 TraesCS5B01G024200 chr2B 91.935 124 10 0 3006 3129 706575716 706575593 2.120000e-39 174.0
20 TraesCS5B01G024200 chr1D 88.592 710 75 5 4545 5254 372431996 372431293 0.000000e+00 857.0
21 TraesCS5B01G024200 chr1D 86.383 705 81 11 4558 5254 20872358 20873055 0.000000e+00 756.0
22 TraesCS5B01G024200 chr4D 88.467 711 78 3 4545 5254 362408196 362408903 0.000000e+00 856.0
23 TraesCS5B01G024200 chr4D 92.632 95 7 0 2733 2827 59469472 59469566 2.790000e-28 137.0
24 TraesCS5B01G024200 chr4A 85.680 838 86 16 4545 5379 595370670 595369864 0.000000e+00 852.0
25 TraesCS5B01G024200 chr4A 87.147 708 74 5 4548 5254 102861058 102860367 0.000000e+00 787.0
26 TraesCS5B01G024200 chr4A 78.295 1267 141 66 1131 2323 343782804 343781598 0.000000e+00 693.0
27 TraesCS5B01G024200 chr4A 87.982 441 31 9 2449 2882 343781600 343781175 8.580000e-138 501.0
28 TraesCS5B01G024200 chr4A 78.775 457 55 27 2896 3336 343781194 343780764 9.470000e-68 268.0
29 TraesCS5B01G024200 chr4A 84.758 269 33 5 3702 3968 343782798 343783060 4.410000e-66 263.0
30 TraesCS5B01G024200 chr4A 84.906 106 4 4 3418 3523 343780673 343780580 4.730000e-16 97.1
31 TraesCS5B01G024200 chrUn 84.487 838 89 11 4547 5381 291053479 291052680 0.000000e+00 789.0
32 TraesCS5B01G024200 chrUn 90.231 563 37 7 2567 3129 67444121 67443577 0.000000e+00 719.0
33 TraesCS5B01G024200 chrUn 89.157 166 5 8 3178 3331 67443565 67443401 1.630000e-45 195.0
34 TraesCS5B01G024200 chr3A 86.453 716 82 10 4545 5254 7129568 7130274 0.000000e+00 771.0
35 TraesCS5B01G024200 chr3A 86.072 718 83 8 4545 5254 507107928 507107220 0.000000e+00 756.0
36 TraesCS5B01G024200 chr3A 89.038 520 38 9 2611 3129 667989534 667990035 1.360000e-175 627.0
37 TraesCS5B01G024200 chr3A 89.735 302 21 5 1067 1367 30181259 30181551 1.510000e-100 377.0
38 TraesCS5B01G024200 chr3A 87.952 166 7 8 3178 3331 667990047 667990211 3.530000e-42 183.0
39 TraesCS5B01G024200 chr3A 96.364 110 3 1 3222 3331 714721063 714720955 4.570000e-41 180.0
40 TraesCS5B01G024200 chr7D 86.154 715 86 8 4545 5254 515487459 515488165 0.000000e+00 760.0
41 TraesCS5B01G024200 chr7D 89.459 351 32 4 5378 5726 222194726 222194379 6.820000e-119 438.0
42 TraesCS5B01G024200 chr7B 88.342 609 37 13 2524 3129 699807560 699806983 0.000000e+00 701.0
43 TraesCS5B01G024200 chr7B 79.503 966 91 54 1417 2323 246617526 246616609 6.400000e-164 588.0
44 TraesCS5B01G024200 chr7B 87.473 463 28 12 2449 2890 246616611 246616158 1.840000e-139 507.0
45 TraesCS5B01G024200 chr7B 89.197 361 33 5 5378 5736 400647199 400646843 4.080000e-121 446.0
46 TraesCS5B01G024200 chr7B 81.911 492 46 26 2841 3331 654426054 654425605 5.430000e-100 375.0
47 TraesCS5B01G024200 chr7B 79.565 460 55 24 2896 3343 246616188 246615756 5.620000e-75 292.0
48 TraesCS5B01G024200 chr7B 85.385 260 20 4 1144 1388 246617782 246617526 2.650000e-63 254.0
49 TraesCS5B01G024200 chr7B 94.928 138 5 2 2316 2451 115520764 115520627 1.250000e-51 215.0
50 TraesCS5B01G024200 chr7B 88.554 166 6 8 3178 3331 186606052 186606216 7.590000e-44 189.0
51 TraesCS5B01G024200 chr7B 91.129 124 11 0 3006 3129 186605917 186606040 9.880000e-38 169.0
52 TraesCS5B01G024200 chr7B 78.431 204 13 7 3418 3620 246615674 246615501 2.830000e-18 104.0
53 TraesCS5B01G024200 chr6B 89.104 569 39 8 2561 3129 29511884 29512429 0.000000e+00 686.0
54 TraesCS5B01G024200 chr6B 95.714 140 5 1 2325 2463 334452347 334452486 2.080000e-54 224.0
55 TraesCS5B01G024200 chr6B 88.554 166 6 7 3178 3331 29512441 29512605 7.590000e-44 189.0
56 TraesCS5B01G024200 chr6B 91.129 124 11 0 3006 3129 589031081 589031204 9.880000e-38 169.0
57 TraesCS5B01G024200 chr6D 84.485 709 77 9 4676 5381 454624340 454623662 0.000000e+00 669.0
58 TraesCS5B01G024200 chr6D 88.366 361 36 6 5378 5736 176073847 176074203 4.110000e-116 429.0
59 TraesCS5B01G024200 chr6D 95.588 136 5 1 2319 2454 127277522 127277388 3.480000e-52 217.0
60 TraesCS5B01G024200 chr1B 80.021 966 92 50 1417 2323 588502666 588501743 6.310000e-174 621.0
61 TraesCS5B01G024200 chr1B 87.905 463 26 12 2449 2890 588501745 588501292 8.520000e-143 518.0
62 TraesCS5B01G024200 chr1B 76.096 753 77 48 2896 3620 588501322 588500645 1.210000e-76 298.0
63 TraesCS5B01G024200 chr1B 83.498 303 33 7 3702 3996 588502935 588503228 3.410000e-67 267.0
64 TraesCS5B01G024200 chr1B 84.231 260 22 5 1144 1388 588502921 588502666 9.610000e-58 235.0
65 TraesCS5B01G024200 chr1B 91.720 157 10 3 2304 2459 574440623 574440777 1.250000e-51 215.0
66 TraesCS5B01G024200 chr1B 92.617 149 10 1 2318 2466 409879942 409879795 4.500000e-51 213.0
67 TraesCS5B01G024200 chr1B 81.659 229 16 8 5153 5381 329209165 329209367 3.560000e-37 167.0
68 TraesCS5B01G024200 chr4B 88.643 361 33 7 5378 5736 207432108 207431754 3.170000e-117 433.0
69 TraesCS5B01G024200 chr4B 88.889 351 33 5 5378 5726 186662260 186661914 1.480000e-115 427.0
70 TraesCS5B01G024200 chr3D 88.366 361 36 5 5378 5736 290893684 290893328 4.110000e-116 429.0
71 TraesCS5B01G024200 chr3D 92.568 148 8 3 2306 2451 250932578 250932432 5.820000e-50 209.0
72 TraesCS5B01G024200 chr6A 88.366 361 35 6 5378 5736 126563411 126563056 1.480000e-115 427.0
73 TraesCS5B01G024200 chr7A 88.089 361 37 6 5378 5736 196764652 196765008 1.910000e-114 424.0
74 TraesCS5B01G024200 chr2A 88.742 302 24 5 1067 1367 491459680 491459972 1.520000e-95 361.0
75 TraesCS5B01G024200 chr2D 85.494 324 20 2 5040 5363 37052478 37052774 4.320000e-81 313.0
76 TraesCS5B01G024200 chr3B 96.269 134 4 1 2319 2451 544781417 544781550 9.680000e-53 219.0
77 TraesCS5B01G024200 chr5A 91.597 119 10 0 5262 5380 487805732 487805850 1.280000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G024200 chr5B 22501267 22507002 5735 True 10593.000000 10593 100.00000 1 5736 1 chr5B.!!$R2 5735
1 TraesCS5B01G024200 chr5B 490420684 490421398 714 True 638.000000 638 82.88800 4637 5379 1 chr5B.!!$R3 742
2 TraesCS5B01G024200 chr5D 30419287 30425147 5860 True 1033.333333 3157 89.14400 1 5736 6 chr5D.!!$R1 5735
3 TraesCS5B01G024200 chr2B 151104673 151106658 1985 True 1205.500000 2141 93.09100 6 2042 2 chr2B.!!$R4 2036
4 TraesCS5B01G024200 chr2B 708861691 708862396 705 True 915.000000 915 90.01400 4545 5254 1 chr2B.!!$R2 709
5 TraesCS5B01G024200 chr2B 757020471 757021270 799 True 789.000000 789 84.48700 4547 5381 1 chr2B.!!$R3 834
6 TraesCS5B01G024200 chr1D 372431293 372431996 703 True 857.000000 857 88.59200 4545 5254 1 chr1D.!!$R1 709
7 TraesCS5B01G024200 chr1D 20872358 20873055 697 False 756.000000 756 86.38300 4558 5254 1 chr1D.!!$F1 696
8 TraesCS5B01G024200 chr4D 362408196 362408903 707 False 856.000000 856 88.46700 4545 5254 1 chr4D.!!$F2 709
9 TraesCS5B01G024200 chr4A 595369864 595370670 806 True 852.000000 852 85.68000 4545 5379 1 chr4A.!!$R2 834
10 TraesCS5B01G024200 chr4A 102860367 102861058 691 True 787.000000 787 87.14700 4548 5254 1 chr4A.!!$R1 706
11 TraesCS5B01G024200 chr4A 343780580 343782804 2224 True 389.775000 693 82.48950 1131 3523 4 chr4A.!!$R3 2392
12 TraesCS5B01G024200 chrUn 291052680 291053479 799 True 789.000000 789 84.48700 4547 5381 1 chrUn.!!$R1 834
13 TraesCS5B01G024200 chrUn 67443401 67444121 720 True 457.000000 719 89.69400 2567 3331 2 chrUn.!!$R2 764
14 TraesCS5B01G024200 chr3A 7129568 7130274 706 False 771.000000 771 86.45300 4545 5254 1 chr3A.!!$F1 709
15 TraesCS5B01G024200 chr3A 507107220 507107928 708 True 756.000000 756 86.07200 4545 5254 1 chr3A.!!$R1 709
16 TraesCS5B01G024200 chr3A 667989534 667990211 677 False 405.000000 627 88.49500 2611 3331 2 chr3A.!!$F3 720
17 TraesCS5B01G024200 chr7D 515487459 515488165 706 False 760.000000 760 86.15400 4545 5254 1 chr7D.!!$F1 709
18 TraesCS5B01G024200 chr7B 699806983 699807560 577 True 701.000000 701 88.34200 2524 3129 1 chr7B.!!$R4 605
19 TraesCS5B01G024200 chr7B 246615501 246617782 2281 True 349.000000 588 82.07140 1144 3620 5 chr7B.!!$R5 2476
20 TraesCS5B01G024200 chr6B 29511884 29512605 721 False 437.500000 686 88.82900 2561 3331 2 chr6B.!!$F3 770
21 TraesCS5B01G024200 chr6D 454623662 454624340 678 True 669.000000 669 84.48500 4676 5381 1 chr6D.!!$R2 705
22 TraesCS5B01G024200 chr1B 588500645 588502921 2276 True 418.000000 621 82.06325 1144 3620 4 chr1B.!!$R2 2476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 634 0.034896 GTGGTCAAGGCGGAGAAGAA 59.965 55.0 0.00 0.0 0.00 2.52 F
610 635 0.321671 TGGTCAAGGCGGAGAAGAAG 59.678 55.0 0.00 0.0 0.00 2.85 F
641 666 0.397957 GGAGGAGGAGGAGGAGGAAC 60.398 65.0 0.00 0.0 0.00 3.62 F
2341 2678 0.620556 ACTACTACCTCCGTCCGGAA 59.379 55.0 5.23 0.0 44.66 4.30 F
2452 2789 0.038744 TTTCGGACGGAGGGAGTAGT 59.961 55.0 0.00 0.0 0.00 2.73 F
3520 3961 0.106868 CTGAATGATGGGGAGCAGCA 60.107 55.0 0.00 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2433 2770 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.0 0.0 0.0 0.00 3.46 R
2435 2772 0.393537 GAACTACTCCCTCCGTCCGA 60.394 60.0 0.0 0.0 0.00 4.55 R
2436 2773 0.394080 AGAACTACTCCCTCCGTCCG 60.394 60.0 0.0 0.0 0.00 4.79 R
4221 4675 0.028110 GATCCCAACGAAAGCGATGC 59.972 55.0 0.0 0.0 38.76 3.91 R
4224 4678 0.108329 GGAGATCCCAACGAAAGCGA 60.108 55.0 0.0 0.0 36.67 4.93 R
4819 5718 0.385390 CCAAACAGCCTGGTTCACAC 59.615 55.0 0.0 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
287 306 2.445654 GCCAGGAGGAGGAGGAGG 60.446 72.222 0.00 0.00 36.89 4.30
288 307 3.015332 GCCAGGAGGAGGAGGAGGA 62.015 68.421 0.00 0.00 36.89 3.71
289 308 1.232792 CCAGGAGGAGGAGGAGGAG 59.767 68.421 0.00 0.00 36.89 3.69
290 309 1.232792 CAGGAGGAGGAGGAGGAGG 59.767 68.421 0.00 0.00 0.00 4.30
291 310 1.087725 AGGAGGAGGAGGAGGAGGA 59.912 63.158 0.00 0.00 0.00 3.71
292 311 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
293 312 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
294 313 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
295 314 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
511 536 1.284313 AGGCCAAGAGGAAGAGGAAG 58.716 55.000 5.01 0.00 36.89 3.46
600 625 4.043200 GCGCAAGGTGGTCAAGGC 62.043 66.667 0.30 0.00 38.28 4.35
601 626 3.726517 CGCAAGGTGGTCAAGGCG 61.727 66.667 0.00 0.00 38.45 5.52
602 627 3.365265 GCAAGGTGGTCAAGGCGG 61.365 66.667 0.00 0.00 0.00 6.13
603 628 2.429930 CAAGGTGGTCAAGGCGGA 59.570 61.111 0.00 0.00 0.00 5.54
604 629 1.672356 CAAGGTGGTCAAGGCGGAG 60.672 63.158 0.00 0.00 0.00 4.63
605 630 1.841556 AAGGTGGTCAAGGCGGAGA 60.842 57.895 0.00 0.00 0.00 3.71
606 631 1.415672 AAGGTGGTCAAGGCGGAGAA 61.416 55.000 0.00 0.00 0.00 2.87
607 632 1.376037 GGTGGTCAAGGCGGAGAAG 60.376 63.158 0.00 0.00 0.00 2.85
608 633 1.671742 GTGGTCAAGGCGGAGAAGA 59.328 57.895 0.00 0.00 0.00 2.87
609 634 0.034896 GTGGTCAAGGCGGAGAAGAA 59.965 55.000 0.00 0.00 0.00 2.52
610 635 0.321671 TGGTCAAGGCGGAGAAGAAG 59.678 55.000 0.00 0.00 0.00 2.85
611 636 0.608640 GGTCAAGGCGGAGAAGAAGA 59.391 55.000 0.00 0.00 0.00 2.87
612 637 1.404851 GGTCAAGGCGGAGAAGAAGAG 60.405 57.143 0.00 0.00 0.00 2.85
613 638 0.898320 TCAAGGCGGAGAAGAAGAGG 59.102 55.000 0.00 0.00 0.00 3.69
614 639 0.610687 CAAGGCGGAGAAGAAGAGGT 59.389 55.000 0.00 0.00 0.00 3.85
615 640 0.610687 AAGGCGGAGAAGAAGAGGTG 59.389 55.000 0.00 0.00 0.00 4.00
616 641 1.448717 GGCGGAGAAGAAGAGGTGC 60.449 63.158 0.00 0.00 0.00 5.01
617 642 1.448717 GCGGAGAAGAAGAGGTGCC 60.449 63.158 0.00 0.00 0.00 5.01
618 643 1.219393 CGGAGAAGAAGAGGTGCCC 59.781 63.158 0.00 0.00 0.00 5.36
619 644 1.219393 GGAGAAGAAGAGGTGCCCG 59.781 63.158 0.00 0.00 0.00 6.13
620 645 1.448717 GAGAAGAAGAGGTGCCCGC 60.449 63.158 0.00 0.00 0.00 6.13
621 646 2.436824 GAAGAAGAGGTGCCCGCC 60.437 66.667 0.00 0.00 0.00 6.13
622 647 4.394712 AAGAAGAGGTGCCCGCCG 62.395 66.667 0.00 0.00 0.00 6.46
638 663 2.197324 CGGAGGAGGAGGAGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
639 664 2.387772 CGGAGGAGGAGGAGGAGGA 61.388 68.421 0.00 0.00 0.00 3.71
640 665 1.939082 CGGAGGAGGAGGAGGAGGAA 61.939 65.000 0.00 0.00 0.00 3.36
641 666 0.397957 GGAGGAGGAGGAGGAGGAAC 60.398 65.000 0.00 0.00 0.00 3.62
642 667 0.753848 GAGGAGGAGGAGGAGGAACG 60.754 65.000 0.00 0.00 0.00 3.95
643 668 2.428085 GGAGGAGGAGGAGGAACGC 61.428 68.421 0.00 0.00 0.00 4.84
644 669 1.682684 GAGGAGGAGGAGGAACGCA 60.683 63.158 0.00 0.00 0.00 5.24
645 670 1.229209 AGGAGGAGGAGGAACGCAA 60.229 57.895 0.00 0.00 0.00 4.85
647 672 1.219393 GAGGAGGAGGAACGCAAGG 59.781 63.158 0.00 0.00 46.39 3.61
679 761 1.000955 GAGAAGAAGACGAACCTGCCA 59.999 52.381 0.00 0.00 0.00 4.92
683 765 1.004440 AAGACGAACCTGCCAGAGC 60.004 57.895 0.00 0.00 40.48 4.09
703 797 2.430921 AAGAAGGACGAGCGCACG 60.431 61.111 25.44 25.44 39.31 5.34
1371 1545 0.815734 CCTGCCATCTTCCTTTGCAG 59.184 55.000 0.00 0.00 46.82 4.41
1388 1562 5.757850 TTGCAGTTTCTTCTTCTTCTTCC 57.242 39.130 0.00 0.00 0.00 3.46
1396 1570 4.583871 TCTTCTTCTTCTTCCTGGATTGC 58.416 43.478 0.00 0.00 0.00 3.56
1422 1597 2.368439 TGGAGAATGCACTACAATGCC 58.632 47.619 0.00 0.00 45.50 4.40
1432 1607 3.638484 CACTACAATGCCGATACGATCA 58.362 45.455 0.00 0.00 0.00 2.92
1724 1942 4.556942 TCTGTTGCTCTGAATTTGTGTG 57.443 40.909 0.00 0.00 0.00 3.82
1784 2002 4.682860 GGCACAATGAACAATGAAGTGAAG 59.317 41.667 0.00 0.00 0.00 3.02
1863 2081 4.766373 TCTGTCCTCAGATATGCATCTCTC 59.234 45.833 11.42 3.95 44.58 3.20
1874 2092 2.443416 TGCATCTCTCTTGCTTTGCAT 58.557 42.857 0.00 0.00 38.76 3.96
2013 2330 1.427368 ACCCCCTTAGTTGTGATGCAA 59.573 47.619 0.00 0.00 34.16 4.08
2055 2383 4.916041 TCTGGTTCCATCTTCTGTGAAT 57.084 40.909 0.00 0.00 0.00 2.57
2164 2501 7.926018 GGTTTTGTGATAGTCTTGTTTTTGGAT 59.074 33.333 0.00 0.00 0.00 3.41
2186 2523 8.137437 TGGATTTTCAATCACAGAAAGAAAGAC 58.863 33.333 0.00 0.00 36.45 3.01
2221 2558 1.136891 GTTGCTTCCAAGTGGCAAGTT 59.863 47.619 0.00 0.00 44.81 2.66
2233 2570 2.675844 GTGGCAAGTTTTGGTTTTGGTC 59.324 45.455 0.00 0.00 0.00 4.02
2246 2583 3.592059 GTTTTGGTCGCCTCATAGTACA 58.408 45.455 0.00 0.00 0.00 2.90
2247 2584 4.189231 GTTTTGGTCGCCTCATAGTACAT 58.811 43.478 0.00 0.00 0.00 2.29
2248 2585 4.481368 TTTGGTCGCCTCATAGTACATT 57.519 40.909 0.00 0.00 0.00 2.71
2249 2586 3.452755 TGGTCGCCTCATAGTACATTG 57.547 47.619 0.00 0.00 0.00 2.82
2335 2672 6.442513 GTACATTTGTACTACTACCTCCGT 57.557 41.667 12.51 0.00 45.47 4.69
2336 2673 5.573337 ACATTTGTACTACTACCTCCGTC 57.427 43.478 0.00 0.00 0.00 4.79
2337 2674 4.400567 ACATTTGTACTACTACCTCCGTCC 59.599 45.833 0.00 0.00 0.00 4.79
2338 2675 2.315925 TGTACTACTACCTCCGTCCG 57.684 55.000 0.00 0.00 0.00 4.79
2339 2676 1.134401 TGTACTACTACCTCCGTCCGG 60.134 57.143 0.00 0.00 0.00 5.14
2340 2677 1.139058 GTACTACTACCTCCGTCCGGA 59.861 57.143 0.00 0.00 42.90 5.14
2341 2678 0.620556 ACTACTACCTCCGTCCGGAA 59.379 55.000 5.23 0.00 44.66 4.30
2342 2679 1.004745 ACTACTACCTCCGTCCGGAAA 59.995 52.381 5.23 0.00 44.66 3.13
2343 2680 2.305009 CTACTACCTCCGTCCGGAAAT 58.695 52.381 5.23 3.48 44.66 2.17
2344 2681 2.442236 ACTACCTCCGTCCGGAAATA 57.558 50.000 5.23 4.45 44.66 1.40
2345 2682 2.027385 ACTACCTCCGTCCGGAAATAC 58.973 52.381 5.23 0.00 44.66 1.89
2346 2683 2.305009 CTACCTCCGTCCGGAAATACT 58.695 52.381 5.23 0.00 44.66 2.12
2347 2684 1.565067 ACCTCCGTCCGGAAATACTT 58.435 50.000 5.23 0.00 44.66 2.24
2348 2685 1.206371 ACCTCCGTCCGGAAATACTTG 59.794 52.381 5.23 0.00 44.66 3.16
2349 2686 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2350 2687 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2351 2688 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2352 2689 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2353 2690 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2354 2691 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2355 2692 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2356 2693 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2357 2694 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2358 2695 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2359 2696 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2360 2697 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2361 2698 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
2362 2699 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
2370 2707 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
2371 2708 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
2372 2709 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
2373 2710 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
2374 2711 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
2375 2712 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
2378 2715 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
2384 2721 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
2416 2753 9.225682 AGTTCTAGATACATCCCTTTTTATCCA 57.774 33.333 0.00 0.00 0.00 3.41
2422 2759 8.927411 AGATACATCCCTTTTTATCCATTTTGG 58.073 33.333 0.00 0.00 39.43 3.28
2423 2760 6.950860 ACATCCCTTTTTATCCATTTTGGT 57.049 33.333 0.00 0.00 39.03 3.67
2424 2761 6.710278 ACATCCCTTTTTATCCATTTTGGTG 58.290 36.000 0.00 0.00 39.03 4.17
2425 2762 6.500049 ACATCCCTTTTTATCCATTTTGGTGA 59.500 34.615 0.00 0.00 39.03 4.02
2426 2763 6.353404 TCCCTTTTTATCCATTTTGGTGAC 57.647 37.500 0.00 0.00 39.03 3.67
2427 2764 5.841237 TCCCTTTTTATCCATTTTGGTGACA 59.159 36.000 0.00 0.00 39.03 3.58
2441 2778 4.671880 TGGTGACAATTATTTTCGGACG 57.328 40.909 0.00 0.00 37.44 4.79
2442 2779 3.437395 TGGTGACAATTATTTTCGGACGG 59.563 43.478 0.00 0.00 37.44 4.79
2443 2780 3.685756 GGTGACAATTATTTTCGGACGGA 59.314 43.478 0.00 0.00 0.00 4.69
2444 2781 4.201783 GGTGACAATTATTTTCGGACGGAG 60.202 45.833 0.00 0.00 0.00 4.63
2445 2782 3.936453 TGACAATTATTTTCGGACGGAGG 59.064 43.478 0.00 0.00 0.00 4.30
2446 2783 3.275999 ACAATTATTTTCGGACGGAGGG 58.724 45.455 0.00 0.00 0.00 4.30
2447 2784 3.054948 ACAATTATTTTCGGACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
2448 2785 2.973694 TTATTTTCGGACGGAGGGAG 57.026 50.000 0.00 0.00 0.00 4.30
2449 2786 1.856629 TATTTTCGGACGGAGGGAGT 58.143 50.000 0.00 0.00 0.00 3.85
2450 2787 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2451 2788 1.180029 TTTTCGGACGGAGGGAGTAG 58.820 55.000 0.00 0.00 0.00 2.57
2452 2789 0.038744 TTTCGGACGGAGGGAGTAGT 59.961 55.000 0.00 0.00 0.00 2.73
2476 2813 4.350816 TCTCAATTTGTCTCCTCTGGGAAA 59.649 41.667 0.00 0.00 41.69 3.13
2609 2960 7.448748 TTTCCATTGATGATCTGCAGATATG 57.551 36.000 28.78 24.64 34.37 1.78
2638 3001 7.172703 GCAAAGTACACTTGACATAGGTAGTTT 59.827 37.037 10.89 0.00 37.81 2.66
2639 3002 9.052759 CAAAGTACACTTGACATAGGTAGTTTT 57.947 33.333 0.00 0.00 36.16 2.43
2671 3034 4.125703 CAGAGTGCATATCTCTTTCCACC 58.874 47.826 2.70 0.00 39.84 4.61
2681 3044 2.300152 TCTCTTTCCACCAGTGCTGTAG 59.700 50.000 0.00 0.00 0.00 2.74
2698 3061 5.300539 TGCTGTAGGAATTGCAAAGTTTACA 59.699 36.000 1.71 9.72 32.12 2.41
2722 3085 4.692228 TCTTTTTGTTTGTTCCATGGAGC 58.308 39.130 20.90 20.90 0.00 4.70
2730 3096 4.314522 TTGTTCCATGGAGCATTTCCTA 57.685 40.909 29.19 12.64 46.92 2.94
2951 3333 6.210385 TGCCTGCCAAGTTAAATCTGAATAAA 59.790 34.615 0.00 0.00 0.00 1.40
2994 3376 5.380900 TGGTTGAATTGTTGTCTCCACATA 58.619 37.500 0.00 0.00 30.55 2.29
2995 3377 5.830457 TGGTTGAATTGTTGTCTCCACATAA 59.170 36.000 0.00 0.00 30.55 1.90
2996 3378 6.149633 GGTTGAATTGTTGTCTCCACATAAC 58.850 40.000 0.00 0.00 30.55 1.89
2997 3379 5.957842 TGAATTGTTGTCTCCACATAACC 57.042 39.130 0.00 0.00 30.55 2.85
2998 3380 5.380900 TGAATTGTTGTCTCCACATAACCA 58.619 37.500 0.00 0.00 30.55 3.67
2999 3381 5.240623 TGAATTGTTGTCTCCACATAACCAC 59.759 40.000 0.00 0.00 30.55 4.16
3000 3382 3.847671 TGTTGTCTCCACATAACCACA 57.152 42.857 0.00 0.00 30.55 4.17
3001 3383 4.365514 TGTTGTCTCCACATAACCACAT 57.634 40.909 0.00 0.00 30.55 3.21
3055 3440 1.725164 GTTTTCAGGAGAAGTACGCCG 59.275 52.381 0.00 0.00 43.25 6.46
3085 3470 1.746615 TCGAATGGCAAGCTGGAGC 60.747 57.895 0.00 0.00 42.49 4.70
3116 3501 4.464244 TCTGTTCCTCAAGGTACATCTGAG 59.536 45.833 8.71 10.71 43.12 3.35
3129 3514 7.458397 AGGTACATCTGAGTTTTAACCAATCA 58.542 34.615 0.00 0.00 0.00 2.57
3130 3515 8.109634 AGGTACATCTGAGTTTTAACCAATCAT 58.890 33.333 0.00 0.00 0.00 2.45
3131 3516 8.398665 GGTACATCTGAGTTTTAACCAATCATC 58.601 37.037 0.00 0.00 0.00 2.92
3132 3517 9.167311 GTACATCTGAGTTTTAACCAATCATCT 57.833 33.333 0.00 0.00 0.00 2.90
3133 3518 8.048534 ACATCTGAGTTTTAACCAATCATCTG 57.951 34.615 0.00 0.00 0.00 2.90
3134 3519 7.121759 ACATCTGAGTTTTAACCAATCATCTGG 59.878 37.037 0.00 0.00 42.68 3.86
3135 3520 6.778821 TCTGAGTTTTAACCAATCATCTGGA 58.221 36.000 0.00 0.00 38.96 3.86
3136 3521 7.405292 TCTGAGTTTTAACCAATCATCTGGAT 58.595 34.615 0.00 0.00 38.96 3.41
3138 3523 8.421249 TGAGTTTTAACCAATCATCTGGATTT 57.579 30.769 0.00 0.00 43.76 2.17
3139 3524 8.869109 TGAGTTTTAACCAATCATCTGGATTTT 58.131 29.630 0.00 0.00 43.76 1.82
3143 3528 9.936759 TTTTAACCAATCATCTGGATTTTAACC 57.063 29.630 0.00 0.00 43.76 2.85
3144 3529 8.657387 TTAACCAATCATCTGGATTTTAACCA 57.343 30.769 0.00 0.00 43.76 3.67
3145 3530 7.552050 AACCAATCATCTGGATTTTAACCAA 57.448 32.000 0.00 0.00 43.76 3.67
3146 3531 7.738437 ACCAATCATCTGGATTTTAACCAAT 57.262 32.000 0.00 0.00 43.76 3.16
3147 3532 7.785033 ACCAATCATCTGGATTTTAACCAATC 58.215 34.615 0.00 0.00 43.76 2.67
3153 3538 6.662865 TCTGGATTTTAACCAATCTTTGCA 57.337 33.333 0.00 0.00 36.95 4.08
3158 3543 4.662468 TTTAACCAATCTTTGCACAGCA 57.338 36.364 0.00 0.00 36.47 4.41
3165 3550 0.740149 TCTTTGCACAGCACCTGTTG 59.260 50.000 0.00 0.00 42.59 3.33
3169 3554 1.096967 TGCACAGCACCTGTTGTCAG 61.097 55.000 0.00 0.00 42.59 3.51
3375 3816 9.612620 AACGAATAATGTTTCTGATTTCTTGTC 57.387 29.630 0.00 0.00 0.00 3.18
3389 3830 8.283699 TGATTTCTTGTCATGATAGCATTTGA 57.716 30.769 0.00 0.00 30.68 2.69
3413 3854 3.952323 CCAAGATTCTGTGCCTGATGATT 59.048 43.478 0.00 0.00 0.00 2.57
3414 3855 4.202020 CCAAGATTCTGTGCCTGATGATTG 60.202 45.833 0.00 0.00 0.00 2.67
3415 3856 2.950309 AGATTCTGTGCCTGATGATTGC 59.050 45.455 0.00 0.00 0.00 3.56
3416 3857 1.089112 TTCTGTGCCTGATGATTGCG 58.911 50.000 0.00 0.00 0.00 4.85
3421 3862 1.942657 GTGCCTGATGATTGCGTACAT 59.057 47.619 0.00 0.00 0.00 2.29
3469 3910 9.906660 TGATTTGGTAATTTTAACTTAGTGCTG 57.093 29.630 0.00 0.00 0.00 4.41
3470 3911 9.908152 GATTTGGTAATTTTAACTTAGTGCTGT 57.092 29.630 0.00 0.00 0.00 4.40
3471 3912 9.691362 ATTTGGTAATTTTAACTTAGTGCTGTG 57.309 29.630 0.00 0.00 0.00 3.66
3472 3913 7.811117 TGGTAATTTTAACTTAGTGCTGTGT 57.189 32.000 0.00 0.00 0.00 3.72
3473 3914 7.644490 TGGTAATTTTAACTTAGTGCTGTGTG 58.356 34.615 0.00 0.00 0.00 3.82
3474 3915 7.283580 TGGTAATTTTAACTTAGTGCTGTGTGT 59.716 33.333 0.00 0.00 0.00 3.72
3475 3916 7.589954 GGTAATTTTAACTTAGTGCTGTGTGTG 59.410 37.037 0.00 0.00 0.00 3.82
3476 3917 6.693315 ATTTTAACTTAGTGCTGTGTGTGT 57.307 33.333 0.00 0.00 0.00 3.72
3477 3918 5.478233 TTTAACTTAGTGCTGTGTGTGTG 57.522 39.130 0.00 0.00 0.00 3.82
3519 3960 0.182061 TCTGAATGATGGGGAGCAGC 59.818 55.000 0.00 0.00 0.00 5.25
3520 3961 0.106868 CTGAATGATGGGGAGCAGCA 60.107 55.000 0.00 0.00 0.00 4.41
3521 3962 0.106868 TGAATGATGGGGAGCAGCAG 60.107 55.000 0.00 0.00 0.00 4.24
3522 3963 1.453762 GAATGATGGGGAGCAGCAGC 61.454 60.000 0.00 0.00 42.56 5.25
3523 3964 2.219449 AATGATGGGGAGCAGCAGCA 62.219 55.000 3.17 0.00 45.49 4.41
3524 3965 2.516460 GATGGGGAGCAGCAGCAG 60.516 66.667 3.17 0.00 45.49 4.24
3525 3966 4.816984 ATGGGGAGCAGCAGCAGC 62.817 66.667 3.17 0.46 45.49 5.25
3554 3995 2.664185 CTGCGGATCATGGGAGCG 60.664 66.667 0.00 0.00 0.00 5.03
3580 4022 1.621301 CGTCTTCTTCTGTGCGCCAG 61.621 60.000 16.84 16.84 42.97 4.85
3608 4050 1.073722 CCAAGCTGACAGGCAGGAA 59.926 57.895 5.10 0.00 45.03 3.36
3609 4051 1.239968 CCAAGCTGACAGGCAGGAAC 61.240 60.000 5.10 0.00 45.03 3.62
3610 4052 1.073897 AAGCTGACAGGCAGGAACC 59.926 57.895 5.10 0.00 45.03 3.62
3746 4200 4.891727 GACGGGTGCGCGATGGAT 62.892 66.667 12.10 0.00 0.00 3.41
3749 4203 4.856801 GGGTGCGCGATGGATGGT 62.857 66.667 12.10 0.00 0.00 3.55
3750 4204 3.576356 GGTGCGCGATGGATGGTG 61.576 66.667 12.10 0.00 0.00 4.17
3753 4207 2.824041 GCGCGATGGATGGTGGTT 60.824 61.111 12.10 0.00 0.00 3.67
3755 4209 1.429021 CGCGATGGATGGTGGTTTG 59.571 57.895 0.00 0.00 0.00 2.93
3921 4375 4.704103 TCCAGGAGCCAGCGGAGT 62.704 66.667 0.00 0.00 0.00 3.85
4032 4486 4.814294 CGGAAGGCGGGAAGACGG 62.814 72.222 0.00 0.00 0.00 4.79
4099 4553 1.757340 CCCCCTCCTACTGACCGAC 60.757 68.421 0.00 0.00 0.00 4.79
4113 4567 2.685897 TGACCGACCTTCCAAGTTTTTG 59.314 45.455 0.00 0.00 0.00 2.44
4118 4572 0.396435 CCTTCCAAGTTTTTGCCCCC 59.604 55.000 0.00 0.00 32.79 5.40
4159 4613 2.034879 CGTAGCAAGCCACCACCAG 61.035 63.158 0.00 0.00 0.00 4.00
4161 4615 0.955919 GTAGCAAGCCACCACCAGTC 60.956 60.000 0.00 0.00 0.00 3.51
4165 4619 3.133365 AAGCCACCACCAGTCCACC 62.133 63.158 0.00 0.00 0.00 4.61
4166 4620 3.884774 GCCACCACCAGTCCACCA 61.885 66.667 0.00 0.00 0.00 4.17
4167 4621 2.113139 CCACCACCAGTCCACCAC 59.887 66.667 0.00 0.00 0.00 4.16
4168 4622 2.452064 CCACCACCAGTCCACCACT 61.452 63.158 0.00 0.00 34.67 4.00
4174 4628 4.054085 CAGTCCACCACTGCACAG 57.946 61.111 0.00 0.00 46.30 3.66
4175 4629 1.598962 CAGTCCACCACTGCACAGG 60.599 63.158 2.21 0.00 46.30 4.00
4176 4630 1.766059 AGTCCACCACTGCACAGGA 60.766 57.895 6.68 0.00 32.26 3.86
4218 4672 7.279758 GGAAGAGGATGAAGAAAGACAATACTG 59.720 40.741 0.00 0.00 0.00 2.74
4221 4675 6.176183 AGGATGAAGAAAGACAATACTGTGG 58.824 40.000 0.00 0.00 35.30 4.17
4222 4676 5.163713 GGATGAAGAAAGACAATACTGTGGC 60.164 44.000 0.00 0.00 35.30 5.01
4223 4677 4.713553 TGAAGAAAGACAATACTGTGGCA 58.286 39.130 0.00 0.00 35.30 4.92
4224 4678 5.316167 TGAAGAAAGACAATACTGTGGCAT 58.684 37.500 0.00 0.00 35.30 4.40
4225 4679 5.412594 TGAAGAAAGACAATACTGTGGCATC 59.587 40.000 0.00 0.00 35.30 3.91
4226 4680 3.935203 AGAAAGACAATACTGTGGCATCG 59.065 43.478 0.00 0.00 35.30 3.84
4227 4681 1.656652 AGACAATACTGTGGCATCGC 58.343 50.000 0.00 0.00 35.30 4.58
4228 4682 1.208052 AGACAATACTGTGGCATCGCT 59.792 47.619 0.00 0.00 35.30 4.93
4229 4683 2.009774 GACAATACTGTGGCATCGCTT 58.990 47.619 0.00 0.00 35.30 4.68
4231 4685 2.420022 ACAATACTGTGGCATCGCTTTC 59.580 45.455 0.00 0.00 33.30 2.62
4232 4686 1.290203 ATACTGTGGCATCGCTTTCG 58.710 50.000 0.00 0.00 0.00 3.46
4234 4688 0.884704 ACTGTGGCATCGCTTTCGTT 60.885 50.000 0.00 0.00 36.96 3.85
4235 4689 0.453282 CTGTGGCATCGCTTTCGTTG 60.453 55.000 0.00 0.00 38.17 4.10
4236 4690 1.154225 GTGGCATCGCTTTCGTTGG 60.154 57.895 0.00 0.00 36.29 3.77
4249 4710 0.107214 TCGTTGGGATCTCCATTGCC 60.107 55.000 4.04 0.00 46.52 4.52
4255 4716 1.342374 GGGATCTCCATTGCCAACCTT 60.342 52.381 0.00 0.00 37.91 3.50
4256 4717 2.460669 GGATCTCCATTGCCAACCTTT 58.539 47.619 0.00 0.00 35.64 3.11
4258 4719 3.633986 GGATCTCCATTGCCAACCTTTAG 59.366 47.826 0.00 0.00 35.64 1.85
4264 4725 4.898861 TCCATTGCCAACCTTTAGTTTTCT 59.101 37.500 0.00 0.00 36.18 2.52
4275 4736 9.203421 CAACCTTTAGTTTTCTTCTTGTTTGTT 57.797 29.630 0.00 0.00 36.18 2.83
4276 4737 8.981724 ACCTTTAGTTTTCTTCTTGTTTGTTC 57.018 30.769 0.00 0.00 0.00 3.18
4277 4738 8.803235 ACCTTTAGTTTTCTTCTTGTTTGTTCT 58.197 29.630 0.00 0.00 0.00 3.01
4278 4739 9.290483 CCTTTAGTTTTCTTCTTGTTTGTTCTC 57.710 33.333 0.00 0.00 0.00 2.87
4296 4757 2.283617 TCTCTAGTATGTTCGTCGTCGC 59.716 50.000 0.00 0.00 36.96 5.19
4317 4778 4.497006 CGCCATGGATCAGACTTTGATTTC 60.497 45.833 18.40 0.00 46.51 2.17
4324 4785 4.873746 TCAGACTTTGATTTCGAGACCT 57.126 40.909 0.00 0.00 0.00 3.85
4347 4808 4.814234 TCGTCTTTCTGTATGTTGCTGTTT 59.186 37.500 0.00 0.00 0.00 2.83
4354 4815 7.744087 TTCTGTATGTTGCTGTTTAATCTGT 57.256 32.000 0.00 0.00 0.00 3.41
4358 4819 5.689383 ATGTTGCTGTTTAATCTGTTCGT 57.311 34.783 0.00 0.00 0.00 3.85
4360 4821 4.572795 TGTTGCTGTTTAATCTGTTCGTCA 59.427 37.500 0.00 0.00 0.00 4.35
4361 4822 5.238432 TGTTGCTGTTTAATCTGTTCGTCAT 59.762 36.000 0.00 0.00 0.00 3.06
4362 4823 5.281693 TGCTGTTTAATCTGTTCGTCATG 57.718 39.130 0.00 0.00 0.00 3.07
4363 4824 4.154015 TGCTGTTTAATCTGTTCGTCATGG 59.846 41.667 0.00 0.00 0.00 3.66
4364 4825 4.391830 GCTGTTTAATCTGTTCGTCATGGA 59.608 41.667 0.00 0.00 0.00 3.41
4366 4827 4.693566 TGTTTAATCTGTTCGTCATGGACC 59.306 41.667 0.00 0.00 0.00 4.46
4367 4828 4.545208 TTAATCTGTTCGTCATGGACCA 57.455 40.909 0.00 0.00 0.00 4.02
4368 4829 2.680312 ATCTGTTCGTCATGGACCAG 57.320 50.000 0.00 0.00 0.00 4.00
4371 4832 2.367241 TCTGTTCGTCATGGACCAGAAA 59.633 45.455 0.00 0.00 30.01 2.52
4372 4833 3.007940 TCTGTTCGTCATGGACCAGAAAT 59.992 43.478 0.00 0.00 30.01 2.17
4373 4834 3.750371 TGTTCGTCATGGACCAGAAATT 58.250 40.909 0.00 0.00 0.00 1.82
4416 4877 6.775594 TTTCTGATCCTCGATTAGTCTTGA 57.224 37.500 0.00 0.00 29.47 3.02
4435 5051 5.362143 TCTTGACATCAATGTTTTCCACCAA 59.638 36.000 0.00 0.00 41.95 3.67
4440 5056 7.555554 TGACATCAATGTTTTCCACCAAATTTT 59.444 29.630 0.00 0.00 41.95 1.82
4476 5092 1.798813 AGAACAGAAACACGCGGATTC 59.201 47.619 12.47 11.78 0.00 2.52
4623 5510 2.642700 GCGGTCGCCATTGTTGTT 59.357 55.556 3.73 0.00 34.56 2.83
4624 5511 1.870383 GCGGTCGCCATTGTTGTTA 59.130 52.632 3.73 0.00 34.56 2.41
4803 5700 2.422479 TCGACGAATTGACTAGGTGAGG 59.578 50.000 0.00 0.00 0.00 3.86
4819 5718 4.275936 AGGTGAGGTTTTTGATCGTTTCTG 59.724 41.667 0.00 0.00 0.00 3.02
4829 5728 3.130633 TGATCGTTTCTGTGTGAACCAG 58.869 45.455 0.00 0.00 33.88 4.00
4832 5731 1.680338 GTTTCTGTGTGAACCAGGCT 58.320 50.000 0.00 0.00 33.88 4.58
4875 5778 6.816640 CCGTTTGAATTGTAGATGAAGAGGTA 59.183 38.462 0.00 0.00 0.00 3.08
4879 5782 8.595362 TTGAATTGTAGATGAAGAGGTAGAGA 57.405 34.615 0.00 0.00 0.00 3.10
5057 5962 2.879002 TGCGAAGATCATGAGAGACC 57.121 50.000 0.09 0.00 0.00 3.85
5127 6033 2.143122 TCGGATGCACACAAGTCTTTC 58.857 47.619 0.00 0.00 0.00 2.62
5142 6049 4.464008 AGTCTTTCTCTCACCATTGCAAA 58.536 39.130 1.71 0.00 0.00 3.68
5230 6164 2.223971 GCCCTCTGATGAAATGCATTGG 60.224 50.000 13.82 7.47 37.34 3.16
5254 6188 3.610040 TGTTCGAGTCTTGGCATATGT 57.390 42.857 4.29 0.00 0.00 2.29
5273 6207 0.463654 TGCGGCTGTTTGAGTCTTGT 60.464 50.000 0.00 0.00 0.00 3.16
5292 6226 1.891919 CATATGGGTGTTCGGCCGG 60.892 63.158 27.83 6.80 0.00 6.13
5311 6245 2.866156 CGGTGCAATCGATGACTATGTT 59.134 45.455 0.00 0.00 0.00 2.71
5382 6316 5.564550 AGTAGTGATCAATGTCTTTGGCTT 58.435 37.500 5.80 0.00 35.92 4.35
5418 6352 7.116662 TGCTGAATCTGCAATGTGTTTATTTTC 59.883 33.333 12.38 0.00 35.52 2.29
5420 6354 6.585702 TGAATCTGCAATGTGTTTATTTTCCG 59.414 34.615 0.00 0.00 0.00 4.30
5460 6395 3.587506 AGTATGCCAACCCTCACTTAACT 59.412 43.478 0.00 0.00 0.00 2.24
5474 6409 9.667107 CCCTCACTTAACTTGATCAATAACTAA 57.333 33.333 8.96 4.02 0.00 2.24
5508 6443 2.027837 GCAAGAAAACAATGGGAGGCAT 60.028 45.455 0.00 0.00 0.00 4.40
5515 6450 3.393426 ACAATGGGAGGCATTGAGATT 57.607 42.857 2.69 0.00 41.22 2.40
5521 6456 2.952310 GGGAGGCATTGAGATTTACCAC 59.048 50.000 0.00 0.00 0.00 4.16
5551 6486 2.548493 GCACAATGCATGGTCCTTTGTT 60.548 45.455 2.90 0.00 44.26 2.83
5642 6577 5.288015 CACATCTAGGTCATGCTGTTAGAG 58.712 45.833 0.00 0.00 0.00 2.43
5700 6635 4.280174 GGGGAAATGAGATGTCCATGAATG 59.720 45.833 0.00 0.00 32.70 2.67
5711 6646 4.318332 TGTCCATGAATGTCAGTCAAGTC 58.682 43.478 7.12 1.25 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 203 0.601046 TCTTGACGTTGCTGGAGCTG 60.601 55.000 0.00 0.00 42.66 4.24
247 266 1.528309 GCTCTCTCCTCCCTCCTCG 60.528 68.421 0.00 0.00 0.00 4.63
287 306 4.200283 CACCTCGCGCTCCTCCTC 62.200 72.222 5.56 0.00 0.00 3.71
492 517 1.284313 CTTCCTCTTCCTCTTGGCCT 58.716 55.000 3.32 0.00 0.00 5.19
579 604 3.113514 TTGACCACCTTGCGCTCCA 62.114 57.895 9.73 0.00 0.00 3.86
592 617 0.608640 TCTTCTTCTCCGCCTTGACC 59.391 55.000 0.00 0.00 0.00 4.02
593 618 1.404851 CCTCTTCTTCTCCGCCTTGAC 60.405 57.143 0.00 0.00 0.00 3.18
594 619 0.898320 CCTCTTCTTCTCCGCCTTGA 59.102 55.000 0.00 0.00 0.00 3.02
595 620 0.610687 ACCTCTTCTTCTCCGCCTTG 59.389 55.000 0.00 0.00 0.00 3.61
596 621 0.610687 CACCTCTTCTTCTCCGCCTT 59.389 55.000 0.00 0.00 0.00 4.35
597 622 1.893919 GCACCTCTTCTTCTCCGCCT 61.894 60.000 0.00 0.00 0.00 5.52
598 623 1.448717 GCACCTCTTCTTCTCCGCC 60.449 63.158 0.00 0.00 0.00 6.13
599 624 1.448717 GGCACCTCTTCTTCTCCGC 60.449 63.158 0.00 0.00 0.00 5.54
600 625 4.921834 GGCACCTCTTCTTCTCCG 57.078 61.111 0.00 0.00 0.00 4.63
619 644 4.144727 TCCTCCTCCTCCTCCGGC 62.145 72.222 0.00 0.00 0.00 6.13
620 645 2.197324 CTCCTCCTCCTCCTCCGG 59.803 72.222 0.00 0.00 0.00 5.14
621 646 1.939082 TTCCTCCTCCTCCTCCTCCG 61.939 65.000 0.00 0.00 0.00 4.63
622 647 0.397957 GTTCCTCCTCCTCCTCCTCC 60.398 65.000 0.00 0.00 0.00 4.30
623 648 0.753848 CGTTCCTCCTCCTCCTCCTC 60.754 65.000 0.00 0.00 0.00 3.71
624 649 1.308326 CGTTCCTCCTCCTCCTCCT 59.692 63.158 0.00 0.00 0.00 3.69
625 650 2.428085 GCGTTCCTCCTCCTCCTCC 61.428 68.421 0.00 0.00 0.00 4.30
626 651 1.258445 TTGCGTTCCTCCTCCTCCTC 61.258 60.000 0.00 0.00 0.00 3.71
627 652 1.229209 TTGCGTTCCTCCTCCTCCT 60.229 57.895 0.00 0.00 0.00 3.69
628 653 1.219393 CTTGCGTTCCTCCTCCTCC 59.781 63.158 0.00 0.00 0.00 4.30
629 654 1.219393 CCTTGCGTTCCTCCTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
630 655 1.536662 ACCTTGCGTTCCTCCTCCT 60.537 57.895 0.00 0.00 0.00 3.69
631 656 1.376037 CACCTTGCGTTCCTCCTCC 60.376 63.158 0.00 0.00 0.00 4.30
632 657 1.376037 CCACCTTGCGTTCCTCCTC 60.376 63.158 0.00 0.00 0.00 3.71
633 658 2.113243 GACCACCTTGCGTTCCTCCT 62.113 60.000 0.00 0.00 0.00 3.69
634 659 1.671379 GACCACCTTGCGTTCCTCC 60.671 63.158 0.00 0.00 0.00 4.30
635 660 0.534203 TTGACCACCTTGCGTTCCTC 60.534 55.000 0.00 0.00 0.00 3.71
636 661 0.535102 CTTGACCACCTTGCGTTCCT 60.535 55.000 0.00 0.00 0.00 3.36
637 662 0.534203 TCTTGACCACCTTGCGTTCC 60.534 55.000 0.00 0.00 0.00 3.62
638 663 1.264288 CTTCTTGACCACCTTGCGTTC 59.736 52.381 0.00 0.00 0.00 3.95
639 664 1.308998 CTTCTTGACCACCTTGCGTT 58.691 50.000 0.00 0.00 0.00 4.84
640 665 0.535102 CCTTCTTGACCACCTTGCGT 60.535 55.000 0.00 0.00 0.00 5.24
641 666 0.250295 TCCTTCTTGACCACCTTGCG 60.250 55.000 0.00 0.00 0.00 4.85
642 667 1.072331 TCTCCTTCTTGACCACCTTGC 59.928 52.381 0.00 0.00 0.00 4.01
643 668 3.071602 TCTTCTCCTTCTTGACCACCTTG 59.928 47.826 0.00 0.00 0.00 3.61
644 669 3.318313 TCTTCTCCTTCTTGACCACCTT 58.682 45.455 0.00 0.00 0.00 3.50
645 670 2.977808 TCTTCTCCTTCTTGACCACCT 58.022 47.619 0.00 0.00 0.00 4.00
646 671 3.325135 TCTTCTTCTCCTTCTTGACCACC 59.675 47.826 0.00 0.00 0.00 4.61
647 672 4.311606 GTCTTCTTCTCCTTCTTGACCAC 58.688 47.826 0.00 0.00 0.00 4.16
648 673 3.005897 CGTCTTCTTCTCCTTCTTGACCA 59.994 47.826 0.00 0.00 0.00 4.02
679 761 0.530288 GCTCGTCCTTCTTCTGCTCT 59.470 55.000 0.00 0.00 0.00 4.09
683 765 1.080501 TGCGCTCGTCCTTCTTCTG 60.081 57.895 9.73 0.00 0.00 3.02
858 1000 4.821589 CCTCCTCGGCCTTGACGC 62.822 72.222 0.00 0.00 32.07 5.19
1371 1545 6.569418 GCAATCCAGGAAGAAGAAGAAGAAAC 60.569 42.308 0.00 0.00 0.00 2.78
1388 1562 4.378774 CATTCTCCACTAGAGCAATCCAG 58.621 47.826 0.00 0.00 42.90 3.86
1396 1570 4.991153 TGTAGTGCATTCTCCACTAGAG 57.009 45.455 0.00 0.00 44.03 2.43
1413 1588 3.859961 GGATGATCGTATCGGCATTGTAG 59.140 47.826 0.00 0.00 0.00 2.74
1415 1590 2.037121 TGGATGATCGTATCGGCATTGT 59.963 45.455 0.00 0.00 0.00 2.71
1432 1607 4.341235 CCTCACATGCAAGAATCAATGGAT 59.659 41.667 0.00 0.00 34.43 3.41
1724 1942 1.211969 CTGCTGCATGTGCCTTCAC 59.788 57.895 1.31 0.00 43.40 3.18
1794 2012 1.259609 TGAGAAATGCAGGCTTTGGG 58.740 50.000 0.00 0.00 0.00 4.12
1795 2013 2.494471 TCATGAGAAATGCAGGCTTTGG 59.506 45.455 0.00 0.00 0.00 3.28
1863 2081 4.227538 CAAACAGAGAGATGCAAAGCAAG 58.772 43.478 0.00 0.00 43.62 4.01
1874 2092 8.833493 CAAATATACATGATGCAAACAGAGAGA 58.167 33.333 0.00 0.00 0.00 3.10
2013 2330 0.839946 ACCCTGACAGCTGACAAGTT 59.160 50.000 23.35 0.00 0.00 2.66
2055 2383 4.850680 ACTGAAACTCCAACACCAAAGTA 58.149 39.130 0.00 0.00 0.00 2.24
2164 2501 9.874205 AAATGTCTTTCTTTCTGTGATTGAAAA 57.126 25.926 0.00 0.00 33.70 2.29
2186 2523 5.754406 TGGAAGCAACTCAAATGTCAAAATG 59.246 36.000 0.00 0.00 0.00 2.32
2221 2558 1.698506 ATGAGGCGACCAAAACCAAA 58.301 45.000 0.00 0.00 0.00 3.28
2233 2570 3.607775 GCAATGCAATGTACTATGAGGCG 60.608 47.826 0.00 0.00 0.00 5.52
2268 2605 4.334552 TGCTCCTGCATCTCACAAATTTA 58.665 39.130 0.00 0.00 45.31 1.40
2326 2663 2.305009 AGTATTTCCGGACGGAGGTAG 58.695 52.381 13.64 0.00 46.06 3.18
2327 2664 2.428171 CAAGTATTTCCGGACGGAGGTA 59.572 50.000 13.64 8.09 46.06 3.08
2328 2665 1.206371 CAAGTATTTCCGGACGGAGGT 59.794 52.381 13.64 9.03 46.06 3.85
2329 2666 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2330 2667 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2331 2668 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2332 2669 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2333 2670 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2334 2671 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2335 2672 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
2336 2673 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2337 2674 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2344 2681 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
2345 2682 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
2346 2683 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
2347 2684 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
2348 2685 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
2349 2686 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
2352 2689 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
2358 2695 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
2390 2727 9.225682 TGGATAAAAAGGGATGTATCTAGAACT 57.774 33.333 0.00 0.00 0.00 3.01
2396 2733 8.927411 CCAAAATGGATAAAAAGGGATGTATCT 58.073 33.333 0.00 0.00 40.96 1.98
2397 2734 8.704668 ACCAAAATGGATAAAAAGGGATGTATC 58.295 33.333 2.85 0.00 40.96 2.24
2398 2735 8.485392 CACCAAAATGGATAAAAAGGGATGTAT 58.515 33.333 2.85 0.00 40.96 2.29
2399 2736 7.676043 TCACCAAAATGGATAAAAAGGGATGTA 59.324 33.333 2.85 0.00 40.96 2.29
2400 2737 6.500049 TCACCAAAATGGATAAAAAGGGATGT 59.500 34.615 2.85 0.00 40.96 3.06
2401 2738 6.818142 GTCACCAAAATGGATAAAAAGGGATG 59.182 38.462 2.85 0.00 40.96 3.51
2402 2739 6.500049 TGTCACCAAAATGGATAAAAAGGGAT 59.500 34.615 2.85 0.00 40.96 3.85
2403 2740 5.841237 TGTCACCAAAATGGATAAAAAGGGA 59.159 36.000 2.85 0.00 40.96 4.20
2404 2741 6.107901 TGTCACCAAAATGGATAAAAAGGG 57.892 37.500 2.85 0.00 40.96 3.95
2405 2742 8.620116 AATTGTCACCAAAATGGATAAAAAGG 57.380 30.769 2.85 0.00 40.96 3.11
2411 2748 9.579768 CGAAAATAATTGTCACCAAAATGGATA 57.420 29.630 2.85 0.00 40.96 2.59
2412 2749 7.548780 CCGAAAATAATTGTCACCAAAATGGAT 59.451 33.333 2.85 0.00 40.96 3.41
2413 2750 6.870965 CCGAAAATAATTGTCACCAAAATGGA 59.129 34.615 2.85 0.00 40.96 3.41
2414 2751 6.870965 TCCGAAAATAATTGTCACCAAAATGG 59.129 34.615 0.00 0.00 45.02 3.16
2415 2752 7.410300 CGTCCGAAAATAATTGTCACCAAAATG 60.410 37.037 0.00 0.00 33.44 2.32
2416 2753 6.584563 CGTCCGAAAATAATTGTCACCAAAAT 59.415 34.615 0.00 0.00 33.44 1.82
2417 2754 5.915758 CGTCCGAAAATAATTGTCACCAAAA 59.084 36.000 0.00 0.00 33.44 2.44
2418 2755 5.453648 CGTCCGAAAATAATTGTCACCAAA 58.546 37.500 0.00 0.00 33.44 3.28
2419 2756 4.083217 CCGTCCGAAAATAATTGTCACCAA 60.083 41.667 0.00 0.00 34.45 3.67
2420 2757 3.437395 CCGTCCGAAAATAATTGTCACCA 59.563 43.478 0.00 0.00 0.00 4.17
2421 2758 3.685756 TCCGTCCGAAAATAATTGTCACC 59.314 43.478 0.00 0.00 0.00 4.02
2422 2759 4.201783 CCTCCGTCCGAAAATAATTGTCAC 60.202 45.833 0.00 0.00 0.00 3.67
2423 2760 3.936453 CCTCCGTCCGAAAATAATTGTCA 59.064 43.478 0.00 0.00 0.00 3.58
2424 2761 3.311596 CCCTCCGTCCGAAAATAATTGTC 59.688 47.826 0.00 0.00 0.00 3.18
2425 2762 3.054948 TCCCTCCGTCCGAAAATAATTGT 60.055 43.478 0.00 0.00 0.00 2.71
2426 2763 3.537580 TCCCTCCGTCCGAAAATAATTG 58.462 45.455 0.00 0.00 0.00 2.32
2427 2764 3.199289 ACTCCCTCCGTCCGAAAATAATT 59.801 43.478 0.00 0.00 0.00 1.40
2428 2765 2.770232 ACTCCCTCCGTCCGAAAATAAT 59.230 45.455 0.00 0.00 0.00 1.28
2429 2766 2.181975 ACTCCCTCCGTCCGAAAATAA 58.818 47.619 0.00 0.00 0.00 1.40
2430 2767 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2431 2768 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
2432 2769 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
2433 2770 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
2434 2771 0.038744 AACTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
2435 2772 0.393537 GAACTACTCCCTCCGTCCGA 60.394 60.000 0.00 0.00 0.00 4.55
2436 2773 0.394080 AGAACTACTCCCTCCGTCCG 60.394 60.000 0.00 0.00 0.00 4.79
2437 2774 1.340795 TGAGAACTACTCCCTCCGTCC 60.341 57.143 0.00 0.00 44.34 4.79
2438 2775 2.125773 TGAGAACTACTCCCTCCGTC 57.874 55.000 0.00 0.00 44.34 4.79
2439 2776 2.599408 TTGAGAACTACTCCCTCCGT 57.401 50.000 0.00 0.00 44.34 4.69
2440 2777 4.184629 CAAATTGAGAACTACTCCCTCCG 58.815 47.826 0.00 0.00 44.34 4.63
2441 2778 5.046231 AGACAAATTGAGAACTACTCCCTCC 60.046 44.000 0.00 0.00 44.34 4.30
2442 2779 6.043854 AGACAAATTGAGAACTACTCCCTC 57.956 41.667 0.00 0.00 44.34 4.30
2443 2780 5.046231 GGAGACAAATTGAGAACTACTCCCT 60.046 44.000 0.00 0.00 44.34 4.20
2444 2781 5.046231 AGGAGACAAATTGAGAACTACTCCC 60.046 44.000 0.00 0.00 44.34 4.30
2445 2782 6.043854 AGGAGACAAATTGAGAACTACTCC 57.956 41.667 0.00 0.00 44.34 3.85
2446 2783 6.811170 CAGAGGAGACAAATTGAGAACTACTC 59.189 42.308 0.00 8.72 45.11 2.59
2447 2784 6.295575 CCAGAGGAGACAAATTGAGAACTACT 60.296 42.308 0.00 0.00 0.00 2.57
2448 2785 5.872070 CCAGAGGAGACAAATTGAGAACTAC 59.128 44.000 0.00 0.00 0.00 2.73
2449 2786 5.046304 CCCAGAGGAGACAAATTGAGAACTA 60.046 44.000 0.00 0.00 33.47 2.24
2450 2787 4.263243 CCCAGAGGAGACAAATTGAGAACT 60.263 45.833 0.00 0.00 33.47 3.01
2451 2788 4.006319 CCCAGAGGAGACAAATTGAGAAC 58.994 47.826 0.00 0.00 33.47 3.01
2452 2789 3.909995 TCCCAGAGGAGACAAATTGAGAA 59.090 43.478 0.00 0.00 37.19 2.87
2476 2813 3.244764 CAGGTGTCTCTGCAATGCT 57.755 52.632 6.82 0.00 0.00 3.79
2501 2843 3.254166 GCAAAGCTGAGAAAGATTGGTGA 59.746 43.478 0.00 0.00 33.88 4.02
2609 2960 3.904136 ATGTCAAGTGTACTTTGCAGC 57.096 42.857 0.00 0.00 33.11 5.25
2653 3016 3.624861 CACTGGTGGAAAGAGATATGCAC 59.375 47.826 0.00 0.00 37.19 4.57
2671 3034 3.254166 ACTTTGCAATTCCTACAGCACTG 59.746 43.478 0.00 0.00 36.62 3.66
2681 3044 9.437045 CAAAAAGAATGTAAACTTTGCAATTCC 57.563 29.630 0.00 0.00 36.62 3.01
2722 3085 6.596888 TGAGTTCAAGATCAGCTTAGGAAATG 59.403 38.462 0.00 0.00 34.31 2.32
2730 3096 5.742063 TCATCATGAGTTCAAGATCAGCTT 58.258 37.500 0.09 0.00 32.64 3.74
2839 3217 7.930865 AGTATGATGAATTTAAGCTGAGGAGTC 59.069 37.037 0.00 0.00 0.00 3.36
2951 3333 6.011122 ACCAGGAAAGCAGAATCTCATTAT 57.989 37.500 0.00 0.00 0.00 1.28
2994 3376 2.559668 CAGCAGGATCAACAATGTGGTT 59.440 45.455 0.00 0.00 0.00 3.67
2995 3377 2.165167 CAGCAGGATCAACAATGTGGT 58.835 47.619 0.00 0.00 0.00 4.16
2996 3378 2.439409 TCAGCAGGATCAACAATGTGG 58.561 47.619 0.00 0.00 0.00 4.17
2997 3379 3.672511 GCTTCAGCAGGATCAACAATGTG 60.673 47.826 0.00 0.00 41.59 3.21
2998 3380 2.490903 GCTTCAGCAGGATCAACAATGT 59.509 45.455 0.00 0.00 41.59 2.71
2999 3381 2.159282 GGCTTCAGCAGGATCAACAATG 60.159 50.000 0.30 0.00 44.36 2.82
3000 3382 2.097825 GGCTTCAGCAGGATCAACAAT 58.902 47.619 0.30 0.00 44.36 2.71
3001 3383 1.202915 TGGCTTCAGCAGGATCAACAA 60.203 47.619 0.30 0.00 44.36 2.83
3067 3452 1.746615 GCTCCAGCTTGCCATTCGA 60.747 57.895 0.00 0.00 38.21 3.71
3129 3514 7.099120 GTGCAAAGATTGGTTAAAATCCAGAT 58.901 34.615 0.00 0.00 37.28 2.90
3130 3515 6.041409 TGTGCAAAGATTGGTTAAAATCCAGA 59.959 34.615 0.00 0.00 37.28 3.86
3131 3516 6.222389 TGTGCAAAGATTGGTTAAAATCCAG 58.778 36.000 0.00 0.00 37.28 3.86
3132 3517 6.166984 TGTGCAAAGATTGGTTAAAATCCA 57.833 33.333 0.00 0.00 37.28 3.41
3133 3518 5.120674 GCTGTGCAAAGATTGGTTAAAATCC 59.879 40.000 8.49 0.00 37.28 3.01
3134 3519 5.695816 TGCTGTGCAAAGATTGGTTAAAATC 59.304 36.000 8.49 0.00 34.76 2.17
3135 3520 5.466393 GTGCTGTGCAAAGATTGGTTAAAAT 59.534 36.000 8.49 0.00 41.47 1.82
3136 3521 4.808364 GTGCTGTGCAAAGATTGGTTAAAA 59.192 37.500 8.49 0.00 41.47 1.52
3137 3522 4.367450 GTGCTGTGCAAAGATTGGTTAAA 58.633 39.130 8.49 0.00 41.47 1.52
3138 3523 3.243704 GGTGCTGTGCAAAGATTGGTTAA 60.244 43.478 8.49 0.00 41.47 2.01
3139 3524 2.295909 GGTGCTGTGCAAAGATTGGTTA 59.704 45.455 8.49 0.00 41.47 2.85
3140 3525 1.069049 GGTGCTGTGCAAAGATTGGTT 59.931 47.619 8.49 0.00 41.47 3.67
3141 3526 0.675633 GGTGCTGTGCAAAGATTGGT 59.324 50.000 8.49 0.00 41.47 3.67
3142 3527 0.963962 AGGTGCTGTGCAAAGATTGG 59.036 50.000 8.49 0.00 41.47 3.16
3143 3528 1.338973 ACAGGTGCTGTGCAAAGATTG 59.661 47.619 8.49 2.08 43.63 2.67
3144 3529 1.696063 ACAGGTGCTGTGCAAAGATT 58.304 45.000 8.49 0.00 43.63 2.40
3145 3530 1.338973 CAACAGGTGCTGTGCAAAGAT 59.661 47.619 8.49 0.00 44.62 2.40
3146 3531 0.740149 CAACAGGTGCTGTGCAAAGA 59.260 50.000 8.49 0.00 44.62 2.52
3147 3532 0.457035 ACAACAGGTGCTGTGCAAAG 59.543 50.000 0.00 0.00 44.62 2.77
3169 3554 4.387581 GCAGATGCATGGTGCTGTACAC 62.388 54.545 19.13 0.00 45.31 2.90
3214 3608 2.668250 CACAACACATTCAGGCACATG 58.332 47.619 0.00 0.00 0.00 3.21
3215 3609 1.000060 GCACAACACATTCAGGCACAT 60.000 47.619 0.00 0.00 0.00 3.21
3216 3610 0.385029 GCACAACACATTCAGGCACA 59.615 50.000 0.00 0.00 0.00 4.57
3217 3611 0.385029 TGCACAACACATTCAGGCAC 59.615 50.000 0.00 0.00 0.00 5.01
3218 3612 0.669619 CTGCACAACACATTCAGGCA 59.330 50.000 0.00 0.00 0.00 4.75
3351 3787 9.778993 ATGACAAGAAATCAGAAACATTATTCG 57.221 29.630 0.00 0.00 34.46 3.34
3375 3816 8.023706 CAGAATCTTGGATCAAATGCTATCATG 58.976 37.037 0.00 0.00 32.23 3.07
3389 3830 3.201487 TCATCAGGCACAGAATCTTGGAT 59.799 43.478 0.00 0.00 0.00 3.41
3413 3854 6.928492 TCAAATCTGATGCTAATATGTACGCA 59.072 34.615 0.00 0.00 36.75 5.24
3414 3855 7.351414 TCAAATCTGATGCTAATATGTACGC 57.649 36.000 0.00 0.00 0.00 4.42
3415 3856 7.814587 TCCTCAAATCTGATGCTAATATGTACG 59.185 37.037 0.00 0.00 0.00 3.67
3416 3857 9.494271 TTCCTCAAATCTGATGCTAATATGTAC 57.506 33.333 0.00 0.00 0.00 2.90
3421 3862 9.803507 AATCATTCCTCAAATCTGATGCTAATA 57.196 29.630 0.00 0.00 0.00 0.98
3460 3901 3.392882 TCATCACACACACAGCACTAAG 58.607 45.455 0.00 0.00 0.00 2.18
3464 3905 1.670295 TGTTCATCACACACACAGCAC 59.330 47.619 0.00 0.00 0.00 4.40
3467 3908 2.804527 CTCCTGTTCATCACACACACAG 59.195 50.000 0.00 0.00 35.59 3.66
3468 3909 2.485302 CCTCCTGTTCATCACACACACA 60.485 50.000 0.00 0.00 0.00 3.72
3469 3910 2.146342 CCTCCTGTTCATCACACACAC 58.854 52.381 0.00 0.00 0.00 3.82
3470 3911 1.072173 CCCTCCTGTTCATCACACACA 59.928 52.381 0.00 0.00 0.00 3.72
3471 3912 1.813513 CCCTCCTGTTCATCACACAC 58.186 55.000 0.00 0.00 0.00 3.82
3472 3913 0.036732 GCCCTCCTGTTCATCACACA 59.963 55.000 0.00 0.00 0.00 3.72
3473 3914 0.036732 TGCCCTCCTGTTCATCACAC 59.963 55.000 0.00 0.00 0.00 3.82
3474 3915 0.994247 ATGCCCTCCTGTTCATCACA 59.006 50.000 0.00 0.00 0.00 3.58
3475 3916 1.386533 CATGCCCTCCTGTTCATCAC 58.613 55.000 0.00 0.00 0.00 3.06
3476 3917 0.394762 GCATGCCCTCCTGTTCATCA 60.395 55.000 6.36 0.00 0.00 3.07
3477 3918 0.394762 TGCATGCCCTCCTGTTCATC 60.395 55.000 16.68 0.00 0.00 2.92
3554 3995 1.807573 CAGAAGAAGACGCGGCTCC 60.808 63.158 18.66 0.00 0.00 4.70
3733 4187 3.576356 CACCATCCATCGCGCACC 61.576 66.667 8.75 0.00 0.00 5.01
3746 4200 2.843545 GGGAGCTCCAAACCACCA 59.156 61.111 33.29 0.00 37.91 4.17
3782 4236 4.778143 GCGGCGTTGGTGGAGGAT 62.778 66.667 9.37 0.00 0.00 3.24
4099 4553 0.396435 GGGGGCAAAAACTTGGAAGG 59.604 55.000 0.00 0.00 0.00 3.46
4118 4572 0.460109 TGTCTCGTCAATGGCGATGG 60.460 55.000 11.29 0.00 37.74 3.51
4159 4613 0.465460 TTTCCTGTGCAGTGGTGGAC 60.465 55.000 5.00 0.00 44.99 4.02
4161 4615 0.751277 TGTTTCCTGTGCAGTGGTGG 60.751 55.000 5.00 0.00 0.00 4.61
4165 4619 1.901591 ATCCTGTTTCCTGTGCAGTG 58.098 50.000 0.00 0.00 0.00 3.66
4166 4620 2.906389 TCTATCCTGTTTCCTGTGCAGT 59.094 45.455 0.00 0.00 0.00 4.40
4167 4621 3.616956 TCTATCCTGTTTCCTGTGCAG 57.383 47.619 0.00 0.00 0.00 4.41
4168 4622 3.582647 TCTTCTATCCTGTTTCCTGTGCA 59.417 43.478 0.00 0.00 0.00 4.57
4169 4623 4.207891 TCTTCTATCCTGTTTCCTGTGC 57.792 45.455 0.00 0.00 0.00 4.57
4170 4624 5.046304 TCCTTCTTCTATCCTGTTTCCTGTG 60.046 44.000 0.00 0.00 0.00 3.66
4171 4625 5.094387 TCCTTCTTCTATCCTGTTTCCTGT 58.906 41.667 0.00 0.00 0.00 4.00
4172 4626 5.683876 TCCTTCTTCTATCCTGTTTCCTG 57.316 43.478 0.00 0.00 0.00 3.86
4173 4627 6.026186 TCTTCCTTCTTCTATCCTGTTTCCT 58.974 40.000 0.00 0.00 0.00 3.36
4174 4628 6.301169 TCTTCCTTCTTCTATCCTGTTTCC 57.699 41.667 0.00 0.00 0.00 3.13
4175 4629 6.155393 TCCTCTTCCTTCTTCTATCCTGTTTC 59.845 42.308 0.00 0.00 0.00 2.78
4176 4630 6.026186 TCCTCTTCCTTCTTCTATCCTGTTT 58.974 40.000 0.00 0.00 0.00 2.83
4218 4672 1.154225 CCAACGAAAGCGATGCCAC 60.154 57.895 0.00 0.00 38.76 5.01
4221 4675 0.028110 GATCCCAACGAAAGCGATGC 59.972 55.000 0.00 0.00 38.76 3.91
4222 4676 1.594862 GAGATCCCAACGAAAGCGATG 59.405 52.381 0.00 0.00 41.64 3.84
4223 4677 1.473434 GGAGATCCCAACGAAAGCGAT 60.473 52.381 0.00 0.00 36.67 4.58
4224 4678 0.108329 GGAGATCCCAACGAAAGCGA 60.108 55.000 0.00 0.00 36.67 4.93
4225 4679 0.391130 TGGAGATCCCAACGAAAGCG 60.391 55.000 0.00 0.00 43.29 4.68
4226 4680 3.551259 TGGAGATCCCAACGAAAGC 57.449 52.632 0.00 0.00 43.29 3.51
4235 4689 0.259938 AGGTTGGCAATGGAGATCCC 59.740 55.000 1.92 0.00 34.29 3.85
4236 4690 2.149973 AAGGTTGGCAATGGAGATCC 57.850 50.000 1.92 0.00 0.00 3.36
4249 4710 8.757164 ACAAACAAGAAGAAAACTAAAGGTTG 57.243 30.769 0.00 0.00 38.29 3.77
4256 4717 9.886132 ACTAGAGAACAAACAAGAAGAAAACTA 57.114 29.630 0.00 0.00 0.00 2.24
4264 4725 7.924412 ACGAACATACTAGAGAACAAACAAGAA 59.076 33.333 0.00 0.00 0.00 2.52
4275 4736 2.283617 GCGACGACGAACATACTAGAGA 59.716 50.000 12.29 0.00 42.66 3.10
4276 4737 2.599377 GGCGACGACGAACATACTAGAG 60.599 54.545 12.29 0.00 42.66 2.43
4277 4738 1.328680 GGCGACGACGAACATACTAGA 59.671 52.381 12.29 0.00 42.66 2.43
4278 4739 1.063027 TGGCGACGACGAACATACTAG 59.937 52.381 12.29 0.00 42.66 2.57
4279 4740 1.085893 TGGCGACGACGAACATACTA 58.914 50.000 12.29 0.00 42.66 1.82
4296 4757 4.877823 TCGAAATCAAAGTCTGATCCATGG 59.122 41.667 4.97 4.97 44.43 3.66
4324 4785 3.990092 ACAGCAACATACAGAAAGACGA 58.010 40.909 0.00 0.00 0.00 4.20
4326 4787 8.507249 AGATTAAACAGCAACATACAGAAAGAC 58.493 33.333 0.00 0.00 0.00 3.01
4336 4797 5.238432 TGACGAACAGATTAAACAGCAACAT 59.762 36.000 0.00 0.00 0.00 2.71
4337 4798 4.572795 TGACGAACAGATTAAACAGCAACA 59.427 37.500 0.00 0.00 0.00 3.33
4354 4815 3.081061 CCAATTTCTGGTCCATGACGAA 58.919 45.455 0.00 0.00 40.78 3.85
4358 4819 3.619733 CGTCTCCAATTTCTGGTCCATGA 60.620 47.826 0.00 0.00 46.51 3.07
4360 4821 2.356125 CCGTCTCCAATTTCTGGTCCAT 60.356 50.000 0.00 0.00 46.51 3.41
4361 4822 1.003118 CCGTCTCCAATTTCTGGTCCA 59.997 52.381 0.00 0.00 46.51 4.02
4362 4823 1.739067 CCGTCTCCAATTTCTGGTCC 58.261 55.000 0.00 0.00 46.51 4.46
4363 4824 1.087501 GCCGTCTCCAATTTCTGGTC 58.912 55.000 0.00 0.00 46.51 4.02
4364 4825 0.693049 AGCCGTCTCCAATTTCTGGT 59.307 50.000 0.00 0.00 46.51 4.00
4366 4827 4.003648 AGTTAAGCCGTCTCCAATTTCTG 58.996 43.478 0.00 0.00 0.00 3.02
4367 4828 4.287766 AGTTAAGCCGTCTCCAATTTCT 57.712 40.909 0.00 0.00 0.00 2.52
4368 4829 5.176592 ACTAGTTAAGCCGTCTCCAATTTC 58.823 41.667 0.00 0.00 0.00 2.17
4371 4832 4.820894 AACTAGTTAAGCCGTCTCCAAT 57.179 40.909 6.26 0.00 0.00 3.16
4372 4833 4.612264 AAACTAGTTAAGCCGTCTCCAA 57.388 40.909 8.92 0.00 0.00 3.53
4373 4834 4.612264 AAAACTAGTTAAGCCGTCTCCA 57.388 40.909 8.92 0.00 0.00 3.86
4380 4841 6.036191 CGAGGATCAGAAAAACTAGTTAAGCC 59.964 42.308 8.92 3.31 33.17 4.35
4416 4877 7.013178 GGAAAATTTGGTGGAAAACATTGATGT 59.987 33.333 0.00 0.00 44.20 3.06
4435 5051 8.477256 TGTTCTCATCTTCAGTTTTGGAAAATT 58.523 29.630 0.00 0.00 0.00 1.82
4440 5056 5.928976 TCTGTTCTCATCTTCAGTTTTGGA 58.071 37.500 0.00 0.00 0.00 3.53
4476 5092 2.088423 ACTCGGCTCTGTTCTCTACTG 58.912 52.381 0.00 0.00 0.00 2.74
4608 5495 4.351192 GAATCATAACAACAATGGCGACC 58.649 43.478 0.00 0.00 0.00 4.79
4623 5510 6.757897 AAAGAAGCAATCCAACGAATCATA 57.242 33.333 0.00 0.00 0.00 2.15
4624 5511 5.649782 AAAGAAGCAATCCAACGAATCAT 57.350 34.783 0.00 0.00 0.00 2.45
4803 5700 5.229260 GGTTCACACAGAAACGATCAAAAAC 59.771 40.000 0.00 0.00 38.13 2.43
4819 5718 0.385390 CCAAACAGCCTGGTTCACAC 59.615 55.000 0.00 0.00 0.00 3.82
4829 5728 2.867647 GCTTGGTTCAATCCAAACAGCC 60.868 50.000 0.00 0.00 45.26 4.85
4832 5731 1.339610 CGGCTTGGTTCAATCCAAACA 59.660 47.619 0.00 0.00 45.26 2.83
4875 5778 2.117865 CCTCCAAAGCCATCTCTCTCT 58.882 52.381 0.00 0.00 0.00 3.10
4879 5782 1.836802 GAGTCCTCCAAAGCCATCTCT 59.163 52.381 0.00 0.00 0.00 3.10
5127 6033 2.036217 TGGCTTTTTGCAATGGTGAGAG 59.964 45.455 0.00 0.00 45.15 3.20
5142 6049 7.176865 CCAATCATCATATCTCTCAATGGCTTT 59.823 37.037 0.00 0.00 0.00 3.51
5230 6164 0.534203 TGCCAAGACTCGAACAACCC 60.534 55.000 0.00 0.00 0.00 4.11
5254 6188 0.463654 ACAAGACTCAAACAGCCGCA 60.464 50.000 0.00 0.00 0.00 5.69
5273 6207 1.145156 CGGCCGAACACCCATATGA 59.855 57.895 24.07 0.00 0.00 2.15
5292 6226 4.329801 TGTGAACATAGTCATCGATTGCAC 59.670 41.667 0.00 0.00 0.00 4.57
5369 6303 6.815142 GCAGATTAATTCAAGCCAAAGACATT 59.185 34.615 0.00 0.00 0.00 2.71
5382 6316 6.762702 TTGCAGATTCAGCAGATTAATTCA 57.237 33.333 3.87 0.00 43.75 2.57
5418 6352 8.648097 GCATACTATCAGTAAATATGTTGACGG 58.352 37.037 0.00 0.00 33.89 4.79
5420 6354 9.489084 TGGCATACTATCAGTAAATATGTTGAC 57.511 33.333 0.00 0.00 33.89 3.18
5474 6409 9.195411 CATTGTTTTCTTGCAACACATATAAGT 57.805 29.630 0.00 0.00 33.81 2.24
5498 6433 3.205056 TGGTAAATCTCAATGCCTCCCAT 59.795 43.478 0.00 0.00 35.06 4.00
5521 6456 4.557942 GCATTGTGCAAACCTCGG 57.442 55.556 0.00 0.00 44.26 4.63
5534 6469 7.602265 GTGTTATTAAACAAAGGACCATGCATT 59.398 33.333 0.00 0.00 46.84 3.56
5642 6577 3.626217 GGGTCGAATAGTGGGTCAAAATC 59.374 47.826 0.00 0.00 0.00 2.17
5700 6635 5.352284 TCTCAGTTTCTTGACTTGACTGAC 58.648 41.667 0.74 0.00 41.09 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.