Multiple sequence alignment - TraesCS5B01G023800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G023800 chr5B 100.000 4690 0 0 1 4690 22037518 22032829 0.000000e+00 8661
1 TraesCS5B01G023800 chr5B 96.238 3854 106 10 789 4634 463406386 463402564 0.000000e+00 6277
2 TraesCS5B01G023800 chr5B 100.000 741 0 0 4947 5687 22032572 22031832 0.000000e+00 1369
3 TraesCS5B01G023800 chr5B 96.496 742 25 1 4947 5687 463402511 463401770 0.000000e+00 1225
4 TraesCS5B01G023800 chr5B 91.111 585 30 7 59 639 8544700 8545266 0.000000e+00 773
5 TraesCS5B01G023800 chr5B 93.416 486 20 7 3901 4384 389236451 389236926 0.000000e+00 710
6 TraesCS5B01G023800 chr5B 88.652 282 26 5 788 1065 153061382 153061103 7.060000e-89 339
7 TraesCS5B01G023800 chr5B 79.825 456 61 17 789 1232 208769614 208769178 2.570000e-78 303
8 TraesCS5B01G023800 chr5B 94.792 96 5 0 698 793 521014945 521015040 3.550000e-32 150
9 TraesCS5B01G023800 chr5B 96.591 88 3 0 706 793 514867358 514867445 4.590000e-31 147
10 TraesCS5B01G023800 chr5B 93.684 95 6 0 700 794 115527336 115527430 5.940000e-30 143
11 TraesCS5B01G023800 chr7B 97.462 3349 60 8 1286 4634 336257342 336260665 0.000000e+00 5690
12 TraesCS5B01G023800 chr7B 94.444 756 26 3 4947 5687 336260718 336261472 0.000000e+00 1149
13 TraesCS5B01G023800 chr7B 94.497 745 36 4 4947 5687 345993561 345994304 0.000000e+00 1144
14 TraesCS5B01G023800 chr7B 93.683 744 43 4 4947 5687 20342176 20341434 0.000000e+00 1110
15 TraesCS5B01G023800 chr7B 91.600 750 53 6 4947 5687 732524244 732524992 0.000000e+00 1027
16 TraesCS5B01G023800 chr7B 95.222 586 24 3 2948 3533 345988658 345989239 0.000000e+00 924
17 TraesCS5B01G023800 chr7B 86.200 500 45 7 790 1286 246962984 246962506 2.350000e-143 520
18 TraesCS5B01G023800 chr7B 91.384 383 11 10 2569 2951 345987069 345987429 6.580000e-139 505
19 TraesCS5B01G023800 chr7B 91.573 356 8 2 2569 2924 20346463 20346130 6.670000e-129 472
20 TraesCS5B01G023800 chr7B 88.773 383 15 5 2569 2951 178422204 178422558 1.450000e-120 444
21 TraesCS5B01G023800 chr7B 94.981 259 6 1 4383 4634 20342487 20342229 3.190000e-107 399
22 TraesCS5B01G023800 chr7B 94.208 259 3 3 4383 4634 345993255 345993508 8.940000e-103 385
23 TraesCS5B01G023800 chr7B 92.095 253 16 3 790 1040 259606432 259606682 2.520000e-93 353
24 TraesCS5B01G023800 chr7B 96.591 88 3 0 706 793 464555890 464555803 4.590000e-31 147
25 TraesCS5B01G023800 chr7B 100.000 65 0 0 1286 1350 20347194 20347130 2.780000e-23 121
26 TraesCS5B01G023800 chr7B 95.714 70 3 0 1286 1355 345986339 345986408 4.660000e-21 113
27 TraesCS5B01G023800 chr3B 97.016 3351 76 4 1286 4634 589662048 589658720 0.000000e+00 5613
28 TraesCS5B01G023800 chr3B 95.683 1668 45 6 1286 2951 455488147 455489789 0.000000e+00 2656
29 TraesCS5B01G023800 chr3B 95.836 1561 58 5 2948 4503 455491299 455492857 0.000000e+00 2516
30 TraesCS5B01G023800 chr3B 95.828 743 29 2 4947 5687 455493770 455494512 0.000000e+00 1199
31 TraesCS5B01G023800 chr3B 95.553 742 32 1 4947 5687 589658690 589657949 0.000000e+00 1186
32 TraesCS5B01G023800 chr3B 91.722 749 50 9 4947 5685 279515324 279514578 0.000000e+00 1029
33 TraesCS5B01G023800 chr3B 92.181 486 26 7 3901 4384 648407840 648408315 0.000000e+00 676
34 TraesCS5B01G023800 chr3B 88.433 268 28 3 2056 2321 763298803 763299069 2.560000e-83 320
35 TraesCS5B01G023800 chr3B 80.176 454 63 15 789 1232 324239001 324238565 1.190000e-81 315
36 TraesCS5B01G023800 chr3B 89.600 250 19 3 2331 2573 763302918 763303167 1.540000e-80 311
37 TraesCS5B01G023800 chr3B 76.458 480 66 25 790 1242 750229651 750230110 3.450000e-52 217
38 TraesCS5B01G023800 chr3B 96.591 88 3 0 706 793 693119095 693119008 4.590000e-31 147
39 TraesCS5B01G023800 chr6B 96.596 3349 91 4 1286 4634 587740164 587743489 0.000000e+00 5531
40 TraesCS5B01G023800 chr6B 95.424 743 31 3 4947 5687 587743542 587744283 0.000000e+00 1181
41 TraesCS5B01G023800 chr6B 93.621 486 19 7 3901 4384 185001922 185002397 0.000000e+00 715
42 TraesCS5B01G023800 chr6B 92.832 279 18 1 789 1065 541168517 541168795 2.470000e-108 403
43 TraesCS5B01G023800 chr6B 93.050 259 11 1 4383 4634 185006571 185006829 6.960000e-99 372
44 TraesCS5B01G023800 chr5A 91.791 938 71 4 2948 3882 337891739 337890805 0.000000e+00 1301
45 TraesCS5B01G023800 chr5A 84.897 629 42 17 1 624 6627721 6628301 2.280000e-163 586
46 TraesCS5B01G023800 chr2A 90.948 939 81 3 2948 3882 347861798 347862736 0.000000e+00 1260
47 TraesCS5B01G023800 chr7A 90.763 931 78 8 2948 3874 354945428 354946354 0.000000e+00 1236
48 TraesCS5B01G023800 chr3D 86.256 1055 102 18 1371 2399 596714479 596715516 0.000000e+00 1105
49 TraesCS5B01G023800 chr1D 93.610 579 33 2 3308 3882 93821145 93821723 0.000000e+00 861
50 TraesCS5B01G023800 chr2B 91.770 486 28 7 3901 4384 746311632 746311157 0.000000e+00 665
51 TraesCS5B01G023800 chr2B 90.984 488 28 11 3901 4384 388577254 388576779 1.340000e-180 643
52 TraesCS5B01G023800 chr2B 93.407 273 13 3 790 1060 485689312 485689043 3.190000e-107 399
53 TraesCS5B01G023800 chr2B 94.595 259 7 1 4383 4634 388574857 388574599 1.490000e-105 394
54 TraesCS5B01G023800 chr2B 94.595 259 7 1 4383 4634 746309299 746309041 1.490000e-105 394
55 TraesCS5B01G023800 chr2B 92.674 273 18 1 790 1060 324795337 324795065 5.340000e-105 392
56 TraesCS5B01G023800 chr2B 84.973 366 46 4 1857 2222 184875722 184875366 4.190000e-96 363
57 TraesCS5B01G023800 chr2B 85.237 359 34 10 2205 2553 184875148 184874799 9.070000e-93 351
58 TraesCS5B01G023800 chr2B 83.478 345 55 2 1371 1714 184876077 184875734 2.560000e-83 320
59 TraesCS5B01G023800 chr2B 77.802 455 64 22 792 1232 357880247 357880678 4.400000e-61 246
60 TraesCS5B01G023800 chr2B 96.552 87 3 0 707 793 672040697 672040611 1.650000e-30 145
61 TraesCS5B01G023800 chr1B 90.339 383 11 4 2569 2951 288550544 288550188 3.990000e-131 479
62 TraesCS5B01G023800 chr1B 93.407 273 15 2 790 1060 200039303 200039032 8.880000e-108 401
63 TraesCS5B01G023800 chr1B 90.647 278 24 1 790 1065 267807260 267806983 9.000000e-98 368
64 TraesCS5B01G023800 chr4B 84.118 510 48 21 790 1286 346193893 346194382 4.010000e-126 462
65 TraesCS5B01G023800 chr4B 80.739 514 60 27 790 1286 325303699 325304190 1.160000e-96 364
66 TraesCS5B01G023800 chr4B 89.744 273 26 1 790 1060 378469303 378469031 1.170000e-91 348
67 TraesCS5B01G023800 chr5D 87.387 333 26 10 1 333 8419997 8420313 9.000000e-98 368
68 TraesCS5B01G023800 chr5D 93.191 235 9 4 403 635 8420712 8420941 7.060000e-89 339
69 TraesCS5B01G023800 chr3A 89.850 266 12 5 1028 1287 293045934 293045678 1.530000e-85 327
70 TraesCS5B01G023800 chr1A 88.770 187 19 1 1 187 7987276 7987460 1.590000e-55 228
71 TraesCS5B01G023800 chr6A 96.591 88 3 0 706 793 456763054 456763141 4.590000e-31 147
72 TraesCS5B01G023800 chr4D 94.624 93 5 0 701 793 463625057 463625149 1.650000e-30 145
73 TraesCS5B01G023800 chr2D 94.624 93 5 0 701 793 503410003 503410095 1.650000e-30 145
74 TraesCS5B01G023800 chr7D 83.784 148 15 5 1601 1747 19154779 19154918 1.290000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G023800 chr5B 22031832 22037518 5686 True 5015.000000 8661 100.000000 1 5687 2 chr5B.!!$R3 5686
1 TraesCS5B01G023800 chr5B 463401770 463406386 4616 True 3751.000000 6277 96.367000 789 5687 2 chr5B.!!$R4 4898
2 TraesCS5B01G023800 chr5B 8544700 8545266 566 False 773.000000 773 91.111000 59 639 1 chr5B.!!$F1 580
3 TraesCS5B01G023800 chr7B 336257342 336261472 4130 False 3419.500000 5690 95.953000 1286 5687 2 chr7B.!!$F4 4401
4 TraesCS5B01G023800 chr7B 732524244 732524992 748 False 1027.000000 1027 91.600000 4947 5687 1 chr7B.!!$F3 740
5 TraesCS5B01G023800 chr7B 345993255 345994304 1049 False 764.500000 1144 94.352500 4383 5687 2 chr7B.!!$F6 1304
6 TraesCS5B01G023800 chr7B 20341434 20347194 5760 True 525.500000 1110 95.059250 1286 5687 4 chr7B.!!$R3 4401
7 TraesCS5B01G023800 chr7B 345986339 345989239 2900 False 514.000000 924 94.106667 1286 3533 3 chr7B.!!$F5 2247
8 TraesCS5B01G023800 chr3B 589657949 589662048 4099 True 3399.500000 5613 96.284500 1286 5687 2 chr3B.!!$R4 4401
9 TraesCS5B01G023800 chr3B 455488147 455494512 6365 False 2123.666667 2656 95.782333 1286 5687 3 chr3B.!!$F3 4401
10 TraesCS5B01G023800 chr3B 279514578 279515324 746 True 1029.000000 1029 91.722000 4947 5685 1 chr3B.!!$R1 738
11 TraesCS5B01G023800 chr3B 763298803 763303167 4364 False 315.500000 320 89.016500 2056 2573 2 chr3B.!!$F4 517
12 TraesCS5B01G023800 chr6B 587740164 587744283 4119 False 3356.000000 5531 96.010000 1286 5687 2 chr6B.!!$F4 4401
13 TraesCS5B01G023800 chr5A 337890805 337891739 934 True 1301.000000 1301 91.791000 2948 3882 1 chr5A.!!$R1 934
14 TraesCS5B01G023800 chr5A 6627721 6628301 580 False 586.000000 586 84.897000 1 624 1 chr5A.!!$F1 623
15 TraesCS5B01G023800 chr2A 347861798 347862736 938 False 1260.000000 1260 90.948000 2948 3882 1 chr2A.!!$F1 934
16 TraesCS5B01G023800 chr7A 354945428 354946354 926 False 1236.000000 1236 90.763000 2948 3874 1 chr7A.!!$F1 926
17 TraesCS5B01G023800 chr3D 596714479 596715516 1037 False 1105.000000 1105 86.256000 1371 2399 1 chr3D.!!$F1 1028
18 TraesCS5B01G023800 chr1D 93821145 93821723 578 False 861.000000 861 93.610000 3308 3882 1 chr1D.!!$F1 574
19 TraesCS5B01G023800 chr2B 746309041 746311632 2591 True 529.500000 665 93.182500 3901 4634 2 chr2B.!!$R6 733
20 TraesCS5B01G023800 chr2B 388574599 388577254 2655 True 518.500000 643 92.789500 3901 4634 2 chr2B.!!$R5 733
21 TraesCS5B01G023800 chr2B 184874799 184876077 1278 True 344.666667 363 84.562667 1371 2553 3 chr2B.!!$R4 1182
22 TraesCS5B01G023800 chr5D 8419997 8420941 944 False 353.500000 368 90.289000 1 635 2 chr5D.!!$F1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
509 521 0.032130 TGACACTCGTGACAGAAGCC 59.968 55.000 3.74 0.00 32.09 4.35 F
759 771 0.105658 CTCCCAGAATCCGACCCCTA 60.106 60.000 0.00 0.00 0.00 3.53 F
775 787 0.325671 CCTACCCAGCTTCTCCCAGA 60.326 60.000 0.00 0.00 0.00 3.86 F
778 790 0.915364 ACCCAGCTTCTCCCAGAATC 59.085 55.000 0.00 0.00 33.13 2.52 F
1142 1156 1.075600 CACTCCCTCCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71 F
1161 1175 1.535444 TTTCCTCCCTCGTCTGCCA 60.535 57.895 0.00 0.00 0.00 4.92 F
3855 12042 1.150827 CACTCTCGAGCATGCAACAA 58.849 50.000 21.98 0.96 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 2262 5.570205 TGGAAATAAGACACACTTGGGTA 57.430 39.130 0.00 0.00 39.38 3.69 R
3091 10871 7.765819 AGAAAGGACCAATTTTGACAAGAAAAG 59.234 33.333 0.00 0.00 0.00 2.27 R
3107 10887 4.407621 TCAACAAGTACAGAGAAAGGACCA 59.592 41.667 0.00 0.00 0.00 4.02 R
3214 11387 6.494835 ACCAATGTAAAGAAGAGCTTGGAATT 59.505 34.615 5.49 0.00 36.80 2.17 R
3566 11750 3.304293 GCTGACAACAACAAAAAGCACTC 59.696 43.478 0.00 0.00 0.00 3.51 R
4122 12329 1.342819 GCTATTGGTCTCGGAGCATCT 59.657 52.381 0.00 1.91 39.81 2.90 R
5534 16464 0.758123 CCCACCAAAGCCATGTTGTT 59.242 50.000 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.072330 TCAGATCTAGAGCAGACGGAGAT 59.928 47.826 11.20 0.00 35.62 2.75
28 29 1.974265 TCTAGAGCAGACGGAGATGG 58.026 55.000 0.00 0.00 0.00 3.51
29 30 1.490910 TCTAGAGCAGACGGAGATGGA 59.509 52.381 0.00 0.00 0.00 3.41
30 31 2.092375 TCTAGAGCAGACGGAGATGGAA 60.092 50.000 0.00 0.00 0.00 3.53
52 53 2.693017 GGAGGGGGCAGAGAGAGA 59.307 66.667 0.00 0.00 0.00 3.10
54 55 1.618030 GAGGGGGCAGAGAGAGAGA 59.382 63.158 0.00 0.00 0.00 3.10
56 57 1.457455 GGGGGCAGAGAGAGAGAGG 60.457 68.421 0.00 0.00 0.00 3.69
57 58 1.309688 GGGGCAGAGAGAGAGAGGT 59.690 63.158 0.00 0.00 0.00 3.85
82 85 3.378427 GGCTTACTCTTGATTTTGCGGAT 59.622 43.478 0.00 0.00 0.00 4.18
219 223 2.024871 CGGACAGAGCGACGGATC 59.975 66.667 0.00 0.00 0.00 3.36
221 225 2.122167 GGACAGAGCGACGGATCCT 61.122 63.158 10.75 0.00 0.00 3.24
223 227 1.658686 GACAGAGCGACGGATCCTGT 61.659 60.000 10.75 9.57 0.00 4.00
260 264 2.202676 GGAGGAGCTCGAAGCACG 60.203 66.667 7.83 0.00 45.56 5.34
297 301 2.448736 GGTCCCCATCCTCCCTCC 60.449 72.222 0.00 0.00 0.00 4.30
298 302 2.448736 GTCCCCATCCTCCCTCCC 60.449 72.222 0.00 0.00 0.00 4.30
299 303 2.628465 TCCCCATCCTCCCTCCCT 60.628 66.667 0.00 0.00 0.00 4.20
300 304 2.122189 CCCCATCCTCCCTCCCTC 60.122 72.222 0.00 0.00 0.00 4.30
301 305 2.122189 CCCATCCTCCCTCCCTCC 60.122 72.222 0.00 0.00 0.00 4.30
302 306 2.122189 CCATCCTCCCTCCCTCCC 60.122 72.222 0.00 0.00 0.00 4.30
303 307 2.731461 CCATCCTCCCTCCCTCCCT 61.731 68.421 0.00 0.00 0.00 4.20
304 308 1.152139 CATCCTCCCTCCCTCCCTC 60.152 68.421 0.00 0.00 0.00 4.30
305 309 2.416923 ATCCTCCCTCCCTCCCTCC 61.417 68.421 0.00 0.00 0.00 4.30
306 310 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
307 311 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
308 312 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
309 313 3.039526 CCCTCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
310 314 2.612251 CCTCCCTCCCTCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
311 315 2.018086 CCTCCCTCCCTCCCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
312 316 1.541672 CTCCCTCCCTCCCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
325 329 4.856607 CTCTCTTCGCCGGCGGTC 62.857 72.222 44.95 18.45 40.25 4.79
361 373 2.284258 AGAGCCAGGCGAGGAAGT 60.284 61.111 5.55 0.00 0.00 3.01
382 394 0.251832 AGGAAGCTTCTGGAGTCGGA 60.252 55.000 25.05 0.00 0.00 4.55
387 399 0.738389 GCTTCTGGAGTCGGAGAGAG 59.262 60.000 0.00 0.00 36.95 3.20
388 400 1.680555 GCTTCTGGAGTCGGAGAGAGA 60.681 57.143 0.00 0.00 36.95 3.10
389 401 2.288666 CTTCTGGAGTCGGAGAGAGAG 58.711 57.143 0.00 0.00 36.95 3.20
390 402 0.107410 TCTGGAGTCGGAGAGAGAGC 60.107 60.000 0.00 0.00 36.95 4.09
391 403 1.436195 CTGGAGTCGGAGAGAGAGCG 61.436 65.000 0.00 0.00 36.95 5.03
392 404 2.184167 GGAGTCGGAGAGAGAGCGG 61.184 68.421 0.00 0.00 36.95 5.52
393 405 2.124487 AGTCGGAGAGAGAGCGGG 60.124 66.667 0.00 0.00 36.95 6.13
394 406 3.213402 GTCGGAGAGAGAGCGGGG 61.213 72.222 0.00 0.00 36.95 5.73
395 407 4.507916 TCGGAGAGAGAGCGGGGG 62.508 72.222 0.00 0.00 0.00 5.40
396 408 4.824515 CGGAGAGAGAGCGGGGGT 62.825 72.222 0.00 0.00 0.00 4.95
397 409 3.151022 GGAGAGAGAGCGGGGGTG 61.151 72.222 0.00 0.00 0.00 4.61
398 410 3.151022 GAGAGAGAGCGGGGGTGG 61.151 72.222 0.00 0.00 0.00 4.61
399 411 4.787280 AGAGAGAGCGGGGGTGGG 62.787 72.222 0.00 0.00 0.00 4.61
409 421 3.798359 GGGGTGGGGAGGGGGATA 61.798 72.222 0.00 0.00 0.00 2.59
410 422 2.379365 GGGTGGGGAGGGGGATAA 59.621 66.667 0.00 0.00 0.00 1.75
411 423 1.309280 GGGTGGGGAGGGGGATAAA 60.309 63.158 0.00 0.00 0.00 1.40
412 424 0.927220 GGGTGGGGAGGGGGATAAAA 60.927 60.000 0.00 0.00 0.00 1.52
445 457 4.348495 GGAGGGAGTGGGTGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
446 458 3.009714 GAGGGAGTGGGTGGGGAC 61.010 72.222 0.00 0.00 0.00 4.46
450 462 3.948719 GAGTGGGTGGGGACGCAA 61.949 66.667 0.00 0.00 44.70 4.85
451 463 3.256960 AGTGGGTGGGGACGCAAT 61.257 61.111 0.00 0.00 44.70 3.56
452 464 3.061848 GTGGGTGGGGACGCAATG 61.062 66.667 0.00 0.00 44.70 2.82
453 465 4.358841 TGGGTGGGGACGCAATGG 62.359 66.667 0.00 0.00 44.70 3.16
455 467 4.041762 GGTGGGGACGCAATGGGA 62.042 66.667 3.77 0.00 44.70 4.37
456 468 2.438434 GTGGGGACGCAATGGGAG 60.438 66.667 3.77 0.00 41.67 4.30
457 469 3.727258 TGGGGACGCAATGGGAGG 61.727 66.667 3.77 0.00 0.00 4.30
458 470 3.728373 GGGGACGCAATGGGAGGT 61.728 66.667 3.77 0.00 0.00 3.85
459 471 2.124695 GGGACGCAATGGGAGGTC 60.125 66.667 3.77 0.00 0.00 3.85
460 472 2.511600 GGACGCAATGGGAGGTCG 60.512 66.667 3.77 0.00 0.00 4.79
461 473 2.577059 GACGCAATGGGAGGTCGA 59.423 61.111 3.77 0.00 0.00 4.20
462 474 1.810030 GACGCAATGGGAGGTCGAC 60.810 63.158 7.13 7.13 0.00 4.20
463 475 2.264480 CGCAATGGGAGGTCGACA 59.736 61.111 18.91 0.00 0.00 4.35
464 476 2.100631 CGCAATGGGAGGTCGACAC 61.101 63.158 18.91 10.53 0.00 3.67
465 477 2.100631 GCAATGGGAGGTCGACACG 61.101 63.158 18.91 0.00 0.00 4.49
466 478 1.292223 CAATGGGAGGTCGACACGT 59.708 57.895 18.91 0.24 0.00 4.49
467 479 1.014044 CAATGGGAGGTCGACACGTG 61.014 60.000 18.91 15.48 0.00 4.49
468 480 2.781595 AATGGGAGGTCGACACGTGC 62.782 60.000 17.22 7.72 0.00 5.34
469 481 4.736896 GGGAGGTCGACACGTGCC 62.737 72.222 17.22 11.96 41.09 5.01
470 482 4.736896 GGAGGTCGACACGTGCCC 62.737 72.222 17.22 10.66 0.00 5.36
471 483 3.681835 GAGGTCGACACGTGCCCT 61.682 66.667 17.22 15.47 0.00 5.19
472 484 3.628280 GAGGTCGACACGTGCCCTC 62.628 68.421 17.22 19.71 33.44 4.30
473 485 4.736896 GGTCGACACGTGCCCTCC 62.737 72.222 17.22 9.95 0.00 4.30
474 486 4.736896 GTCGACACGTGCCCTCCC 62.737 72.222 17.22 0.00 0.00 4.30
485 497 3.834799 CCCTCCCGCTGACCGTAC 61.835 72.222 0.00 0.00 34.38 3.67
486 498 4.189188 CCTCCCGCTGACCGTACG 62.189 72.222 8.69 8.69 34.38 3.67
487 499 3.129502 CTCCCGCTGACCGTACGA 61.130 66.667 18.76 0.00 34.38 3.43
488 500 2.438975 TCCCGCTGACCGTACGAT 60.439 61.111 18.76 0.00 34.38 3.73
489 501 2.025727 CCCGCTGACCGTACGATC 59.974 66.667 18.76 10.51 34.38 3.69
490 502 2.478890 CCCGCTGACCGTACGATCT 61.479 63.158 18.76 0.00 34.38 2.75
491 503 1.298413 CCGCTGACCGTACGATCTG 60.298 63.158 18.76 14.95 34.38 2.90
492 504 1.712018 CCGCTGACCGTACGATCTGA 61.712 60.000 19.63 0.00 34.38 3.27
493 505 0.589229 CGCTGACCGTACGATCTGAC 60.589 60.000 19.63 10.04 0.00 3.51
494 506 0.450583 GCTGACCGTACGATCTGACA 59.549 55.000 19.63 7.36 0.00 3.58
495 507 1.794437 GCTGACCGTACGATCTGACAC 60.794 57.143 19.63 0.00 0.00 3.67
496 508 1.738350 CTGACCGTACGATCTGACACT 59.262 52.381 18.76 0.00 0.00 3.55
497 509 1.736126 TGACCGTACGATCTGACACTC 59.264 52.381 18.76 0.00 0.00 3.51
498 510 0.725686 ACCGTACGATCTGACACTCG 59.274 55.000 18.76 0.00 40.62 4.18
500 512 1.529214 CCGTACGATCTGACACTCGTG 60.529 57.143 18.76 0.00 46.66 4.35
501 513 1.392510 CGTACGATCTGACACTCGTGA 59.607 52.381 10.44 0.00 46.66 4.35
502 514 2.771689 GTACGATCTGACACTCGTGAC 58.228 52.381 13.37 0.00 46.66 3.67
503 515 1.235724 ACGATCTGACACTCGTGACA 58.764 50.000 3.74 3.09 45.63 3.58
508 520 3.569916 TGACACTCGTGACAGAAGC 57.430 52.632 3.74 0.00 32.09 3.86
509 521 0.032130 TGACACTCGTGACAGAAGCC 59.968 55.000 3.74 0.00 32.09 4.35
510 522 0.032130 GACACTCGTGACAGAAGCCA 59.968 55.000 3.74 0.00 0.00 4.75
511 523 0.249489 ACACTCGTGACAGAAGCCAC 60.249 55.000 3.74 0.00 0.00 5.01
534 546 4.806339 CGCCCTCTCCCCTCCCTT 62.806 72.222 0.00 0.00 0.00 3.95
535 547 2.286502 GCCCTCTCCCCTCCCTTT 60.287 66.667 0.00 0.00 0.00 3.11
536 548 1.931180 GCCCTCTCCCCTCCCTTTT 60.931 63.158 0.00 0.00 0.00 2.27
537 549 2.002625 CCCTCTCCCCTCCCTTTTG 58.997 63.158 0.00 0.00 0.00 2.44
538 550 1.304617 CCTCTCCCCTCCCTTTTGC 59.695 63.158 0.00 0.00 0.00 3.68
539 551 1.210885 CCTCTCCCCTCCCTTTTGCT 61.211 60.000 0.00 0.00 0.00 3.91
540 552 0.254462 CTCTCCCCTCCCTTTTGCTC 59.746 60.000 0.00 0.00 0.00 4.26
541 553 1.208165 TCTCCCCTCCCTTTTGCTCC 61.208 60.000 0.00 0.00 0.00 4.70
542 554 2.044946 CCCCTCCCTTTTGCTCCG 60.045 66.667 0.00 0.00 0.00 4.63
543 555 2.751837 CCCTCCCTTTTGCTCCGC 60.752 66.667 0.00 0.00 0.00 5.54
544 556 2.751837 CCTCCCTTTTGCTCCGCC 60.752 66.667 0.00 0.00 0.00 6.13
545 557 2.352805 CTCCCTTTTGCTCCGCCT 59.647 61.111 0.00 0.00 0.00 5.52
546 558 1.746991 CTCCCTTTTGCTCCGCCTC 60.747 63.158 0.00 0.00 0.00 4.70
547 559 2.751837 CCCTTTTGCTCCGCCTCC 60.752 66.667 0.00 0.00 0.00 4.30
548 560 2.352805 CCTTTTGCTCCGCCTCCT 59.647 61.111 0.00 0.00 0.00 3.69
549 561 1.746991 CCTTTTGCTCCGCCTCCTC 60.747 63.158 0.00 0.00 0.00 3.71
550 562 2.047274 TTTTGCTCCGCCTCCTCG 60.047 61.111 0.00 0.00 0.00 4.63
551 563 2.507110 CTTTTGCTCCGCCTCCTCGA 62.507 60.000 0.00 0.00 0.00 4.04
552 564 1.899437 TTTTGCTCCGCCTCCTCGAT 61.899 55.000 0.00 0.00 0.00 3.59
553 565 1.899437 TTTGCTCCGCCTCCTCGATT 61.899 55.000 0.00 0.00 0.00 3.34
554 566 2.028337 GCTCCGCCTCCTCGATTC 59.972 66.667 0.00 0.00 0.00 2.52
555 567 2.786495 GCTCCGCCTCCTCGATTCA 61.786 63.158 0.00 0.00 0.00 2.57
556 568 1.816537 CTCCGCCTCCTCGATTCAA 59.183 57.895 0.00 0.00 0.00 2.69
557 569 0.175760 CTCCGCCTCCTCGATTCAAA 59.824 55.000 0.00 0.00 0.00 2.69
558 570 0.830648 TCCGCCTCCTCGATTCAAAT 59.169 50.000 0.00 0.00 0.00 2.32
559 571 1.209504 TCCGCCTCCTCGATTCAAATT 59.790 47.619 0.00 0.00 0.00 1.82
560 572 2.017049 CCGCCTCCTCGATTCAAATTT 58.983 47.619 0.00 0.00 0.00 1.82
561 573 2.032178 CCGCCTCCTCGATTCAAATTTC 59.968 50.000 0.00 0.00 0.00 2.17
562 574 2.285834 CGCCTCCTCGATTCAAATTTCG 60.286 50.000 0.00 0.00 36.72 3.46
563 575 2.936498 GCCTCCTCGATTCAAATTTCGA 59.064 45.455 0.47 0.47 41.70 3.71
564 576 3.374058 GCCTCCTCGATTCAAATTTCGAA 59.626 43.478 0.00 0.00 43.14 3.71
565 577 4.142687 GCCTCCTCGATTCAAATTTCGAAA 60.143 41.667 13.91 13.91 43.14 3.46
566 578 5.449177 GCCTCCTCGATTCAAATTTCGAAAT 60.449 40.000 17.60 17.60 43.14 2.17
567 579 6.555315 CCTCCTCGATTCAAATTTCGAAATT 58.445 36.000 26.51 26.51 43.14 1.82
568 580 7.029563 CCTCCTCGATTCAAATTTCGAAATTT 58.970 34.615 32.93 32.93 46.42 1.82
578 590 6.419484 AAATTTCGAAATTTGAACCTCCCT 57.581 33.333 35.91 16.62 44.46 4.20
579 591 5.644977 ATTTCGAAATTTGAACCTCCCTC 57.355 39.130 17.60 0.00 0.00 4.30
580 592 4.367039 TTCGAAATTTGAACCTCCCTCT 57.633 40.909 0.00 0.00 0.00 3.69
581 593 3.939066 TCGAAATTTGAACCTCCCTCTC 58.061 45.455 0.00 0.00 0.00 3.20
582 594 2.673368 CGAAATTTGAACCTCCCTCTCG 59.327 50.000 0.00 0.00 0.00 4.04
583 595 2.115343 AATTTGAACCTCCCTCTCGC 57.885 50.000 0.00 0.00 0.00 5.03
584 596 0.253327 ATTTGAACCTCCCTCTCGCC 59.747 55.000 0.00 0.00 0.00 5.54
585 597 1.125093 TTTGAACCTCCCTCTCGCCA 61.125 55.000 0.00 0.00 0.00 5.69
586 598 1.827399 TTGAACCTCCCTCTCGCCAC 61.827 60.000 0.00 0.00 0.00 5.01
587 599 3.003763 AACCTCCCTCTCGCCACC 61.004 66.667 0.00 0.00 0.00 4.61
588 600 3.846405 AACCTCCCTCTCGCCACCA 62.846 63.158 0.00 0.00 0.00 4.17
589 601 3.775654 CCTCCCTCTCGCCACCAC 61.776 72.222 0.00 0.00 0.00 4.16
590 602 2.681778 CTCCCTCTCGCCACCACT 60.682 66.667 0.00 0.00 0.00 4.00
591 603 2.203788 TCCCTCTCGCCACCACTT 60.204 61.111 0.00 0.00 0.00 3.16
592 604 2.232298 CTCCCTCTCGCCACCACTTC 62.232 65.000 0.00 0.00 0.00 3.01
593 605 2.286523 CCCTCTCGCCACCACTTCT 61.287 63.158 0.00 0.00 0.00 2.85
594 606 0.970937 CCCTCTCGCCACCACTTCTA 60.971 60.000 0.00 0.00 0.00 2.10
595 607 0.173708 CCTCTCGCCACCACTTCTAC 59.826 60.000 0.00 0.00 0.00 2.59
596 608 1.178276 CTCTCGCCACCACTTCTACT 58.822 55.000 0.00 0.00 0.00 2.57
597 609 1.546476 CTCTCGCCACCACTTCTACTT 59.454 52.381 0.00 0.00 0.00 2.24
598 610 1.544691 TCTCGCCACCACTTCTACTTC 59.455 52.381 0.00 0.00 0.00 3.01
599 611 1.546476 CTCGCCACCACTTCTACTTCT 59.454 52.381 0.00 0.00 0.00 2.85
600 612 1.968493 TCGCCACCACTTCTACTTCTT 59.032 47.619 0.00 0.00 0.00 2.52
601 613 2.069273 CGCCACCACTTCTACTTCTTG 58.931 52.381 0.00 0.00 0.00 3.02
602 614 2.427506 GCCACCACTTCTACTTCTTGG 58.572 52.381 0.00 0.00 0.00 3.61
603 615 2.038557 GCCACCACTTCTACTTCTTGGA 59.961 50.000 0.00 0.00 0.00 3.53
604 616 3.665190 CCACCACTTCTACTTCTTGGAC 58.335 50.000 0.00 0.00 0.00 4.02
605 617 3.318017 CACCACTTCTACTTCTTGGACG 58.682 50.000 0.00 0.00 0.00 4.79
606 618 2.299297 ACCACTTCTACTTCTTGGACGG 59.701 50.000 0.00 0.00 0.00 4.79
607 619 2.338500 CACTTCTACTTCTTGGACGGC 58.662 52.381 0.00 0.00 0.00 5.68
608 620 1.067776 ACTTCTACTTCTTGGACGGCG 60.068 52.381 4.80 4.80 0.00 6.46
609 621 0.245539 TTCTACTTCTTGGACGGCGG 59.754 55.000 13.24 0.00 0.00 6.13
610 622 0.896940 TCTACTTCTTGGACGGCGGT 60.897 55.000 13.24 0.00 0.00 5.68
611 623 0.458025 CTACTTCTTGGACGGCGGTC 60.458 60.000 15.59 15.59 42.66 4.79
612 624 2.203972 TACTTCTTGGACGGCGGTCG 62.204 60.000 17.09 0.00 44.39 4.79
613 625 4.367023 TTCTTGGACGGCGGTCGG 62.367 66.667 17.09 10.37 44.39 4.79
621 633 3.755628 CGGCGGTCGGGAGAGAAA 61.756 66.667 0.00 0.00 41.26 2.52
622 634 2.660802 GGCGGTCGGGAGAGAAAA 59.339 61.111 0.00 0.00 41.26 2.29
623 635 1.740664 GGCGGTCGGGAGAGAAAAC 60.741 63.158 0.00 0.00 41.26 2.43
624 636 1.740664 GCGGTCGGGAGAGAAAACC 60.741 63.158 0.00 0.00 41.26 3.27
625 637 1.079336 CGGTCGGGAGAGAAAACCC 60.079 63.158 0.00 0.00 41.26 4.11
630 642 3.534721 GGGAGAGAAAACCCGTGAG 57.465 57.895 0.00 0.00 36.56 3.51
631 643 0.673956 GGGAGAGAAAACCCGTGAGC 60.674 60.000 0.00 0.00 36.56 4.26
632 644 0.321996 GGAGAGAAAACCCGTGAGCT 59.678 55.000 0.00 0.00 0.00 4.09
633 645 1.270893 GGAGAGAAAACCCGTGAGCTT 60.271 52.381 0.00 0.00 0.00 3.74
634 646 2.495084 GAGAGAAAACCCGTGAGCTTT 58.505 47.619 0.00 0.00 0.00 3.51
635 647 2.222027 AGAGAAAACCCGTGAGCTTTG 58.778 47.619 0.00 0.00 0.00 2.77
636 648 2.158813 AGAGAAAACCCGTGAGCTTTGA 60.159 45.455 0.00 0.00 0.00 2.69
637 649 2.814336 GAGAAAACCCGTGAGCTTTGAT 59.186 45.455 0.00 0.00 0.00 2.57
638 650 2.554032 AGAAAACCCGTGAGCTTTGATG 59.446 45.455 0.00 0.00 0.00 3.07
639 651 1.981256 AAACCCGTGAGCTTTGATGT 58.019 45.000 0.00 0.00 0.00 3.06
640 652 2.851263 AACCCGTGAGCTTTGATGTA 57.149 45.000 0.00 0.00 0.00 2.29
641 653 2.094762 ACCCGTGAGCTTTGATGTAC 57.905 50.000 0.00 0.00 0.00 2.90
642 654 1.338769 ACCCGTGAGCTTTGATGTACC 60.339 52.381 0.00 0.00 0.00 3.34
643 655 1.369625 CCGTGAGCTTTGATGTACCC 58.630 55.000 0.00 0.00 0.00 3.69
644 656 1.338674 CCGTGAGCTTTGATGTACCCA 60.339 52.381 0.00 0.00 0.00 4.51
645 657 2.422597 CGTGAGCTTTGATGTACCCAA 58.577 47.619 0.00 0.00 0.00 4.12
646 658 2.811431 CGTGAGCTTTGATGTACCCAAA 59.189 45.455 9.31 9.31 33.12 3.28
647 659 3.252215 CGTGAGCTTTGATGTACCCAAAA 59.748 43.478 10.45 0.00 33.68 2.44
648 660 4.613622 CGTGAGCTTTGATGTACCCAAAAG 60.614 45.833 10.45 8.63 33.68 2.27
649 661 3.255642 TGAGCTTTGATGTACCCAAAAGC 59.744 43.478 20.26 20.26 33.68 3.51
650 662 2.228822 AGCTTTGATGTACCCAAAAGCG 59.771 45.455 21.02 9.33 35.20 4.68
651 663 2.030274 GCTTTGATGTACCCAAAAGCGT 60.030 45.455 15.91 0.00 33.68 5.07
652 664 3.821841 CTTTGATGTACCCAAAAGCGTC 58.178 45.455 10.45 0.00 33.68 5.19
653 665 2.851263 TGATGTACCCAAAAGCGTCT 57.149 45.000 0.00 0.00 0.00 4.18
654 666 3.134574 TGATGTACCCAAAAGCGTCTT 57.865 42.857 0.00 0.00 0.00 3.01
655 667 4.274602 TGATGTACCCAAAAGCGTCTTA 57.725 40.909 0.00 0.00 0.00 2.10
656 668 4.839121 TGATGTACCCAAAAGCGTCTTAT 58.161 39.130 0.00 0.00 0.00 1.73
657 669 5.979993 TGATGTACCCAAAAGCGTCTTATA 58.020 37.500 0.00 0.00 0.00 0.98
658 670 6.588204 TGATGTACCCAAAAGCGTCTTATAT 58.412 36.000 0.00 0.00 0.00 0.86
659 671 7.051623 TGATGTACCCAAAAGCGTCTTATATT 58.948 34.615 0.00 0.00 0.00 1.28
660 672 7.554835 TGATGTACCCAAAAGCGTCTTATATTT 59.445 33.333 0.00 0.00 0.00 1.40
661 673 7.311364 TGTACCCAAAAGCGTCTTATATTTC 57.689 36.000 0.00 0.00 0.00 2.17
662 674 6.879993 TGTACCCAAAAGCGTCTTATATTTCA 59.120 34.615 0.00 0.00 0.00 2.69
663 675 6.190954 ACCCAAAAGCGTCTTATATTTCAC 57.809 37.500 0.00 0.00 0.00 3.18
664 676 5.708230 ACCCAAAAGCGTCTTATATTTCACA 59.292 36.000 0.00 0.00 0.00 3.58
665 677 6.027749 CCCAAAAGCGTCTTATATTTCACAC 58.972 40.000 0.00 0.00 0.00 3.82
666 678 6.348950 CCCAAAAGCGTCTTATATTTCACACA 60.349 38.462 0.00 0.00 0.00 3.72
667 679 7.081349 CCAAAAGCGTCTTATATTTCACACAA 58.919 34.615 0.00 0.00 0.00 3.33
668 680 7.593273 CCAAAAGCGTCTTATATTTCACACAAA 59.407 33.333 0.00 0.00 0.00 2.83
669 681 8.963130 CAAAAGCGTCTTATATTTCACACAAAA 58.037 29.630 0.00 0.00 0.00 2.44
670 682 8.728088 AAAGCGTCTTATATTTCACACAAAAG 57.272 30.769 0.00 0.00 0.00 2.27
671 683 6.842163 AGCGTCTTATATTTCACACAAAAGG 58.158 36.000 0.00 0.00 0.00 3.11
672 684 6.653320 AGCGTCTTATATTTCACACAAAAGGA 59.347 34.615 0.00 0.00 0.00 3.36
673 685 6.961554 GCGTCTTATATTTCACACAAAAGGAG 59.038 38.462 0.00 0.00 0.00 3.69
674 686 7.148474 GCGTCTTATATTTCACACAAAAGGAGA 60.148 37.037 0.00 0.00 0.00 3.71
675 687 8.717821 CGTCTTATATTTCACACAAAAGGAGAA 58.282 33.333 0.00 0.00 0.00 2.87
676 688 9.827411 GTCTTATATTTCACACAAAAGGAGAAC 57.173 33.333 0.00 0.00 0.00 3.01
677 689 9.793259 TCTTATATTTCACACAAAAGGAGAACT 57.207 29.630 0.00 0.00 0.00 3.01
711 723 4.954875 AGCATCTACAATGAGACTTAGGC 58.045 43.478 0.00 0.00 0.00 3.93
712 724 4.061596 GCATCTACAATGAGACTTAGGCC 58.938 47.826 0.00 0.00 0.00 5.19
713 725 4.636249 CATCTACAATGAGACTTAGGCCC 58.364 47.826 0.00 0.00 0.00 5.80
714 726 3.719871 TCTACAATGAGACTTAGGCCCA 58.280 45.455 0.00 0.00 0.00 5.36
715 727 3.706594 TCTACAATGAGACTTAGGCCCAG 59.293 47.826 0.00 0.00 0.00 4.45
716 728 2.269940 ACAATGAGACTTAGGCCCAGT 58.730 47.619 4.82 4.82 0.00 4.00
717 729 2.644798 ACAATGAGACTTAGGCCCAGTT 59.355 45.455 6.64 0.00 0.00 3.16
718 730 3.274288 CAATGAGACTTAGGCCCAGTTC 58.726 50.000 6.64 7.12 0.00 3.01
719 731 2.327325 TGAGACTTAGGCCCAGTTCT 57.673 50.000 6.64 0.49 0.00 3.01
720 732 2.621070 TGAGACTTAGGCCCAGTTCTT 58.379 47.619 6.64 0.00 0.00 2.52
721 733 2.979678 TGAGACTTAGGCCCAGTTCTTT 59.020 45.455 6.64 0.00 0.00 2.52
722 734 3.394606 TGAGACTTAGGCCCAGTTCTTTT 59.605 43.478 6.64 0.00 0.00 2.27
723 735 3.753797 GAGACTTAGGCCCAGTTCTTTTG 59.246 47.826 6.64 0.00 0.00 2.44
724 736 2.229062 GACTTAGGCCCAGTTCTTTTGC 59.771 50.000 6.64 0.00 0.00 3.68
725 737 1.546029 CTTAGGCCCAGTTCTTTTGCC 59.454 52.381 0.00 0.00 42.48 4.52
726 738 0.480690 TAGGCCCAGTTCTTTTGCCA 59.519 50.000 0.00 0.00 44.60 4.92
727 739 0.829182 AGGCCCAGTTCTTTTGCCAG 60.829 55.000 0.00 0.00 44.60 4.85
728 740 0.827507 GGCCCAGTTCTTTTGCCAGA 60.828 55.000 0.00 0.00 41.76 3.86
729 741 1.039856 GCCCAGTTCTTTTGCCAGAA 58.960 50.000 0.00 0.00 0.00 3.02
730 742 1.620323 GCCCAGTTCTTTTGCCAGAAT 59.380 47.619 0.00 0.00 35.23 2.40
731 743 2.353109 GCCCAGTTCTTTTGCCAGAATC 60.353 50.000 0.00 0.00 35.23 2.52
732 744 2.232208 CCCAGTTCTTTTGCCAGAATCC 59.768 50.000 0.00 0.00 35.23 3.01
733 745 2.095059 CCAGTTCTTTTGCCAGAATCCG 60.095 50.000 0.00 0.00 35.23 4.18
734 746 2.095059 CAGTTCTTTTGCCAGAATCCGG 60.095 50.000 0.00 0.00 35.23 5.14
735 747 1.202348 GTTCTTTTGCCAGAATCCGGG 59.798 52.381 0.00 0.00 35.23 5.73
736 748 0.323360 TCTTTTGCCAGAATCCGGGG 60.323 55.000 0.00 0.00 0.00 5.73
737 749 0.323360 CTTTTGCCAGAATCCGGGGA 60.323 55.000 0.00 0.00 0.00 4.81
738 750 0.334676 TTTTGCCAGAATCCGGGGAT 59.665 50.000 0.00 0.00 36.23 3.85
739 751 0.334676 TTTGCCAGAATCCGGGGATT 59.665 50.000 12.62 12.62 46.29 3.01
756 768 1.132500 ATTCTCCCAGAATCCGACCC 58.868 55.000 0.00 0.00 40.75 4.46
757 769 0.981277 TTCTCCCAGAATCCGACCCC 60.981 60.000 0.00 0.00 0.00 4.95
758 770 1.383248 CTCCCAGAATCCGACCCCT 60.383 63.158 0.00 0.00 0.00 4.79
759 771 0.105658 CTCCCAGAATCCGACCCCTA 60.106 60.000 0.00 0.00 0.00 3.53
760 772 0.398098 TCCCAGAATCCGACCCCTAC 60.398 60.000 0.00 0.00 0.00 3.18
761 773 1.408453 CCCAGAATCCGACCCCTACC 61.408 65.000 0.00 0.00 0.00 3.18
762 774 1.408453 CCAGAATCCGACCCCTACCC 61.408 65.000 0.00 0.00 0.00 3.69
763 775 0.689745 CAGAATCCGACCCCTACCCA 60.690 60.000 0.00 0.00 0.00 4.51
764 776 0.398664 AGAATCCGACCCCTACCCAG 60.399 60.000 0.00 0.00 0.00 4.45
765 777 2.041206 GAATCCGACCCCTACCCAGC 62.041 65.000 0.00 0.00 0.00 4.85
766 778 2.547123 AATCCGACCCCTACCCAGCT 62.547 60.000 0.00 0.00 0.00 4.24
767 779 2.547123 ATCCGACCCCTACCCAGCTT 62.547 60.000 0.00 0.00 0.00 3.74
768 780 2.732619 CCGACCCCTACCCAGCTTC 61.733 68.421 0.00 0.00 0.00 3.86
769 781 1.686110 CGACCCCTACCCAGCTTCT 60.686 63.158 0.00 0.00 0.00 2.85
770 782 1.677637 CGACCCCTACCCAGCTTCTC 61.678 65.000 0.00 0.00 0.00 2.87
771 783 1.307084 ACCCCTACCCAGCTTCTCC 60.307 63.158 0.00 0.00 0.00 3.71
772 784 2.073101 CCCCTACCCAGCTTCTCCC 61.073 68.421 0.00 0.00 0.00 4.30
773 785 1.306997 CCCTACCCAGCTTCTCCCA 60.307 63.158 0.00 0.00 0.00 4.37
774 786 1.341156 CCCTACCCAGCTTCTCCCAG 61.341 65.000 0.00 0.00 0.00 4.45
775 787 0.325671 CCTACCCAGCTTCTCCCAGA 60.326 60.000 0.00 0.00 0.00 3.86
776 788 1.573108 CTACCCAGCTTCTCCCAGAA 58.427 55.000 0.00 0.00 32.50 3.02
777 789 2.122768 CTACCCAGCTTCTCCCAGAAT 58.877 52.381 0.00 0.00 33.13 2.40
778 790 0.915364 ACCCAGCTTCTCCCAGAATC 59.085 55.000 0.00 0.00 33.13 2.52
779 791 1.211456 CCCAGCTTCTCCCAGAATCT 58.789 55.000 0.00 0.00 33.13 2.40
780 792 1.563410 CCCAGCTTCTCCCAGAATCTT 59.437 52.381 0.00 0.00 33.13 2.40
781 793 2.025510 CCCAGCTTCTCCCAGAATCTTT 60.026 50.000 0.00 0.00 33.13 2.52
782 794 3.015327 CCAGCTTCTCCCAGAATCTTTG 58.985 50.000 0.00 0.00 33.13 2.77
783 795 3.307975 CCAGCTTCTCCCAGAATCTTTGA 60.308 47.826 0.00 0.00 33.13 2.69
784 796 3.940221 CAGCTTCTCCCAGAATCTTTGAG 59.060 47.826 0.00 0.62 33.13 3.02
785 797 2.682352 GCTTCTCCCAGAATCTTTGAGC 59.318 50.000 1.93 0.00 33.13 4.26
786 798 3.621958 GCTTCTCCCAGAATCTTTGAGCT 60.622 47.826 0.00 0.00 33.13 4.09
787 799 4.383552 GCTTCTCCCAGAATCTTTGAGCTA 60.384 45.833 0.00 0.00 33.13 3.32
822 834 4.400961 AGGCTGGGCAACTCGCTC 62.401 66.667 0.00 0.00 43.80 5.03
850 862 2.113986 CCCCCGATGGCATCCTTC 59.886 66.667 21.20 0.00 0.00 3.46
866 878 2.009625 CTTCGTTGGCCGTTCGATCG 62.010 60.000 9.36 9.36 37.94 3.69
877 889 1.082117 GTTCGATCGGCGTTGACCAT 61.082 55.000 16.41 0.00 41.80 3.55
880 892 1.752501 CGATCGGCGTTGACCATGTC 61.753 60.000 7.38 0.00 34.64 3.06
919 931 1.255600 GTTCGATCGTCGCTGGAATTC 59.744 52.381 15.94 0.00 40.21 2.17
928 940 1.427020 GCTGGAATTCTGCGCACTC 59.573 57.895 5.66 0.15 0.00 3.51
929 941 1.712081 CTGGAATTCTGCGCACTCG 59.288 57.895 5.66 0.00 39.07 4.18
936 948 2.656192 TTCTGCGCACTCGTTTTTAC 57.344 45.000 5.66 0.00 38.14 2.01
943 957 1.193874 GCACTCGTTTTTACCTCGGTG 59.806 52.381 0.00 0.00 0.00 4.94
948 962 1.657094 CGTTTTTACCTCGGTGGATCG 59.343 52.381 2.59 0.00 39.71 3.69
1002 1016 1.202177 CCATTTGGATCGAAACGGCTG 60.202 52.381 4.92 0.30 37.39 4.85
1104 1118 2.781158 GCACAACCGCACAAACCCT 61.781 57.895 0.00 0.00 0.00 4.34
1127 1141 1.149174 CCAATCCATAGCCGCCACT 59.851 57.895 0.00 0.00 0.00 4.00
1142 1156 1.075600 CACTCCCTCCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
1161 1175 1.535444 TTTCCTCCCTCGTCTGCCA 60.535 57.895 0.00 0.00 0.00 4.92
1233 1247 2.492090 GCACGCTCGTCCTCTCAT 59.508 61.111 0.00 0.00 0.00 2.90
1255 1269 3.099170 CATGGAGGGGAGGGGTGG 61.099 72.222 0.00 0.00 0.00 4.61
1262 1276 2.375173 GGGAGGGGTGGGGATGTA 59.625 66.667 0.00 0.00 0.00 2.29
1266 1280 2.776963 GGGGTGGGGATGTAGGGG 60.777 72.222 0.00 0.00 0.00 4.79
1458 1472 2.030562 CGTCAAGGACCAAGCCGT 59.969 61.111 0.00 0.00 0.00 5.68
2099 2262 8.739972 GTGATTTCCATTGTCTATTTACTGGTT 58.260 33.333 0.00 0.00 0.00 3.67
2930 7499 2.317609 CGCGAGTTCTTGGTGTGGG 61.318 63.158 0.00 0.00 0.00 4.61
3046 10826 6.438763 ACATAAGCTCTTTTTACAGTGCAAC 58.561 36.000 0.00 0.00 36.02 4.17
3091 10871 4.111375 TCTTGCAGCTTGTAGTAGTAGC 57.889 45.455 0.00 0.00 35.16 3.58
3214 11387 6.772360 TGCATGTCTTTTATATTGGCTTGA 57.228 33.333 0.00 0.00 0.00 3.02
3218 11391 8.758715 GCATGTCTTTTATATTGGCTTGAATTC 58.241 33.333 0.00 0.00 0.00 2.17
3271 11447 5.120399 TGACCTACAACGTTGAATCAGTTT 58.880 37.500 33.66 11.87 0.00 2.66
3383 11563 6.959361 ACAACTTACTGAATGACATGTGTTC 58.041 36.000 1.15 8.34 0.00 3.18
3565 11749 5.190528 ACCTTCATCCACACTGTCTGATTAT 59.809 40.000 0.00 0.00 0.00 1.28
3566 11750 5.526479 CCTTCATCCACACTGTCTGATTATG 59.474 44.000 0.00 0.00 0.00 1.90
3855 12042 1.150827 CACTCTCGAGCATGCAACAA 58.849 50.000 21.98 0.96 0.00 2.83
4122 12329 2.664825 GCAACAATAGGGGTTGGCA 58.335 52.632 7.31 0.00 44.41 4.92
4582 15500 6.767902 GGATTGAGTTCCTGTATATGCAAGAA 59.232 38.462 1.14 1.14 32.68 2.52
4583 15501 7.041508 GGATTGAGTTCCTGTATATGCAAGAAG 60.042 40.741 5.22 0.00 32.68 2.85
4584 15502 6.544928 TGAGTTCCTGTATATGCAAGAAGA 57.455 37.500 5.22 0.00 0.00 2.87
4634 15552 3.370953 GGTGTTGGTCAGGAGCTGATTAT 60.371 47.826 0.00 0.00 42.73 1.28
4635 15553 4.265073 GTGTTGGTCAGGAGCTGATTATT 58.735 43.478 0.00 0.00 42.73 1.40
4637 15555 5.294552 GTGTTGGTCAGGAGCTGATTATTAC 59.705 44.000 0.00 0.00 42.73 1.89
4638 15556 4.689612 TGGTCAGGAGCTGATTATTACC 57.310 45.455 0.00 0.00 42.73 2.85
4639 15557 3.069586 TGGTCAGGAGCTGATTATTACCG 59.930 47.826 0.00 0.00 42.73 4.02
4640 15558 3.555168 GGTCAGGAGCTGATTATTACCGG 60.555 52.174 0.00 0.00 42.73 5.28
4641 15559 2.632996 TCAGGAGCTGATTATTACCGGG 59.367 50.000 6.32 0.00 35.39 5.73
4643 15561 1.003233 GGAGCTGATTATTACCGGGGG 59.997 57.143 6.32 0.00 0.00 5.40
4644 15562 1.975680 GAGCTGATTATTACCGGGGGA 59.024 52.381 6.32 0.00 0.00 4.81
4645 15563 2.572104 GAGCTGATTATTACCGGGGGAT 59.428 50.000 6.32 0.00 0.00 3.85
4646 15564 2.986728 AGCTGATTATTACCGGGGGATT 59.013 45.455 6.32 0.00 0.00 3.01
4647 15565 3.397955 AGCTGATTATTACCGGGGGATTT 59.602 43.478 6.32 0.00 0.00 2.17
4648 15566 3.506067 GCTGATTATTACCGGGGGATTTG 59.494 47.826 6.32 0.00 0.00 2.32
4650 15568 5.570320 CTGATTATTACCGGGGGATTTGAT 58.430 41.667 6.32 0.00 0.00 2.57
4651 15569 5.321102 TGATTATTACCGGGGGATTTGATG 58.679 41.667 6.32 0.00 0.00 3.07
4656 15574 3.223674 ACCGGGGGATTTGATGATAAC 57.776 47.619 6.32 0.00 0.00 1.89
4657 15575 2.158519 ACCGGGGGATTTGATGATAACC 60.159 50.000 6.32 0.00 0.00 2.85
4658 15576 2.514803 CGGGGGATTTGATGATAACCC 58.485 52.381 0.00 0.00 36.90 4.11
4677 15595 2.292828 CCCCCAGTTCATGTCACTTT 57.707 50.000 0.00 0.00 0.00 2.66
4678 15596 1.888512 CCCCCAGTTCATGTCACTTTG 59.111 52.381 0.00 0.00 0.00 2.77
4679 15597 2.488891 CCCCCAGTTCATGTCACTTTGA 60.489 50.000 0.00 0.00 0.00 2.69
4680 15598 3.424703 CCCCAGTTCATGTCACTTTGAT 58.575 45.455 0.00 0.00 0.00 2.57
4682 15600 4.074259 CCCAGTTCATGTCACTTTGATCA 58.926 43.478 0.00 0.00 0.00 2.92
4683 15601 4.703575 CCCAGTTCATGTCACTTTGATCAT 59.296 41.667 0.00 0.00 0.00 2.45
4684 15602 5.882000 CCCAGTTCATGTCACTTTGATCATA 59.118 40.000 0.00 0.00 0.00 2.15
4685 15603 6.375174 CCCAGTTCATGTCACTTTGATCATAA 59.625 38.462 0.00 0.00 0.00 1.90
4686 15604 7.246311 CCAGTTCATGTCACTTTGATCATAAC 58.754 38.462 0.00 0.00 0.00 1.89
4687 15605 7.246311 CAGTTCATGTCACTTTGATCATAACC 58.754 38.462 0.00 0.00 0.00 2.85
4688 15606 6.375455 AGTTCATGTCACTTTGATCATAACCC 59.625 38.462 0.00 0.00 0.00 4.11
4689 15607 5.192927 TCATGTCACTTTGATCATAACCCC 58.807 41.667 0.00 0.00 0.00 4.95
5053 15972 9.219603 CTTTGATGGTTACTCATTTCTCTTACA 57.780 33.333 0.00 0.00 0.00 2.41
5304 16225 5.950758 ACCGTATGTATTTGCTCAAACAA 57.049 34.783 0.00 0.00 32.51 2.83
5514 16443 2.607187 ACGAGTATTGAAGTCCTTGCG 58.393 47.619 0.00 0.00 0.00 4.85
5529 16459 6.981722 AGTCCTTGCGAAATGAAACTATTTT 58.018 32.000 0.00 0.00 0.00 1.82
5598 16528 1.428448 CGAGAAATTGCACTGGTCGA 58.572 50.000 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.436173 TCTCCGTCTGCTCTAGATCTGA 59.564 50.000 5.18 0.00 37.83 3.27
50 51 0.323908 AGAGTAAGCCGCACCTCTCT 60.324 55.000 0.00 0.00 28.22 3.10
52 53 0.247736 CAAGAGTAAGCCGCACCTCT 59.752 55.000 0.00 0.00 35.86 3.69
54 55 0.905357 ATCAAGAGTAAGCCGCACCT 59.095 50.000 0.00 0.00 0.00 4.00
56 57 3.492313 CAAAATCAAGAGTAAGCCGCAC 58.508 45.455 0.00 0.00 0.00 5.34
57 58 2.095263 GCAAAATCAAGAGTAAGCCGCA 60.095 45.455 0.00 0.00 0.00 5.69
193 197 3.775654 CTCTGTCCGTGCCTCCCC 61.776 72.222 0.00 0.00 0.00 4.81
203 207 2.122167 AGGATCCGTCGCTCTGTCC 61.122 63.158 5.98 0.00 0.00 4.02
219 223 3.530910 AAAGGTGACCCGCGACAGG 62.531 63.158 8.23 2.08 35.12 4.00
221 225 2.280524 CAAAGGTGACCCGCGACA 60.281 61.111 8.23 1.44 35.12 4.35
293 297 2.018086 AGAGAGGGAGGGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
297 301 0.467290 CGAAGAGAGAGGGAGGGAGG 60.467 65.000 0.00 0.00 0.00 4.30
298 302 1.106944 GCGAAGAGAGAGGGAGGGAG 61.107 65.000 0.00 0.00 0.00 4.30
299 303 1.076632 GCGAAGAGAGAGGGAGGGA 60.077 63.158 0.00 0.00 0.00 4.20
300 304 2.131067 GGCGAAGAGAGAGGGAGGG 61.131 68.421 0.00 0.00 0.00 4.30
301 305 2.485795 CGGCGAAGAGAGAGGGAGG 61.486 68.421 0.00 0.00 0.00 4.30
302 306 2.485795 CCGGCGAAGAGAGAGGGAG 61.486 68.421 9.30 0.00 0.00 4.30
303 307 2.440430 CCGGCGAAGAGAGAGGGA 60.440 66.667 9.30 0.00 0.00 4.20
304 308 4.214327 GCCGGCGAAGAGAGAGGG 62.214 72.222 12.58 0.00 0.00 4.30
305 309 4.560856 CGCCGGCGAAGAGAGAGG 62.561 72.222 44.86 10.04 42.83 3.69
325 329 3.814268 CCGCCCAACGCCATCTTG 61.814 66.667 0.00 0.00 41.76 3.02
361 373 0.891373 CGACTCCAGAAGCTTCCTCA 59.109 55.000 22.81 5.79 0.00 3.86
382 394 4.787280 CCCACCCCCGCTCTCTCT 62.787 72.222 0.00 0.00 0.00 3.10
392 404 2.886972 TTTATCCCCCTCCCCACCCC 62.887 65.000 0.00 0.00 0.00 4.95
393 405 0.927220 TTTTATCCCCCTCCCCACCC 60.927 60.000 0.00 0.00 0.00 4.61
394 406 1.012395 TTTTTATCCCCCTCCCCACC 58.988 55.000 0.00 0.00 0.00 4.61
395 407 1.063190 CCTTTTTATCCCCCTCCCCAC 60.063 57.143 0.00 0.00 0.00 4.61
396 408 1.314895 CCTTTTTATCCCCCTCCCCA 58.685 55.000 0.00 0.00 0.00 4.96
397 409 0.561184 CCCTTTTTATCCCCCTCCCC 59.439 60.000 0.00 0.00 0.00 4.81
398 410 0.105658 GCCCTTTTTATCCCCCTCCC 60.106 60.000 0.00 0.00 0.00 4.30
399 411 0.467474 CGCCCTTTTTATCCCCCTCC 60.467 60.000 0.00 0.00 0.00 4.30
400 412 0.467474 CCGCCCTTTTTATCCCCCTC 60.467 60.000 0.00 0.00 0.00 4.30
401 413 1.618586 CCGCCCTTTTTATCCCCCT 59.381 57.895 0.00 0.00 0.00 4.79
402 414 1.456892 CCCGCCCTTTTTATCCCCC 60.457 63.158 0.00 0.00 0.00 5.40
403 415 0.032912 TTCCCGCCCTTTTTATCCCC 60.033 55.000 0.00 0.00 0.00 4.81
404 416 1.479323 GTTTCCCGCCCTTTTTATCCC 59.521 52.381 0.00 0.00 0.00 3.85
405 417 1.133598 CGTTTCCCGCCCTTTTTATCC 59.866 52.381 0.00 0.00 0.00 2.59
406 418 1.133598 CCGTTTCCCGCCCTTTTTATC 59.866 52.381 0.00 0.00 34.38 1.75
407 419 1.179152 CCGTTTCCCGCCCTTTTTAT 58.821 50.000 0.00 0.00 34.38 1.40
408 420 0.894642 CCCGTTTCCCGCCCTTTTTA 60.895 55.000 0.00 0.00 34.38 1.52
409 421 2.204461 CCCGTTTCCCGCCCTTTTT 61.204 57.895 0.00 0.00 34.38 1.94
410 422 2.599281 CCCGTTTCCCGCCCTTTT 60.599 61.111 0.00 0.00 34.38 2.27
411 423 4.671590 CCCCGTTTCCCGCCCTTT 62.672 66.667 0.00 0.00 34.38 3.11
434 446 3.256960 ATTGCGTCCCCACCCACT 61.257 61.111 0.00 0.00 0.00 4.00
442 454 2.124695 GACCTCCCATTGCGTCCC 60.125 66.667 0.00 0.00 0.00 4.46
443 455 2.511600 CGACCTCCCATTGCGTCC 60.512 66.667 0.00 0.00 0.00 4.79
444 456 1.810030 GTCGACCTCCCATTGCGTC 60.810 63.158 3.51 0.00 0.00 5.19
445 457 2.264794 GTCGACCTCCCATTGCGT 59.735 61.111 3.51 0.00 0.00 5.24
446 458 2.100631 GTGTCGACCTCCCATTGCG 61.101 63.158 14.12 0.00 0.00 4.85
447 459 2.100631 CGTGTCGACCTCCCATTGC 61.101 63.158 14.12 0.00 0.00 3.56
448 460 1.014044 CACGTGTCGACCTCCCATTG 61.014 60.000 14.12 0.00 0.00 2.82
449 461 1.292223 CACGTGTCGACCTCCCATT 59.708 57.895 14.12 0.00 0.00 3.16
450 462 2.970639 CACGTGTCGACCTCCCAT 59.029 61.111 14.12 0.00 0.00 4.00
451 463 3.986006 GCACGTGTCGACCTCCCA 61.986 66.667 18.38 0.00 0.00 4.37
452 464 4.736896 GGCACGTGTCGACCTCCC 62.737 72.222 18.38 2.92 0.00 4.30
453 465 4.736896 GGGCACGTGTCGACCTCC 62.737 72.222 18.38 7.50 0.00 4.30
454 466 3.628280 GAGGGCACGTGTCGACCTC 62.628 68.421 24.20 24.20 38.04 3.85
455 467 3.681835 GAGGGCACGTGTCGACCT 61.682 66.667 18.38 18.45 33.70 3.85
456 468 4.736896 GGAGGGCACGTGTCGACC 62.737 72.222 18.38 17.02 0.00 4.79
457 469 4.736896 GGGAGGGCACGTGTCGAC 62.737 72.222 18.38 9.11 0.00 4.20
468 480 3.834799 GTACGGTCAGCGGGAGGG 61.835 72.222 0.00 0.00 0.00 4.30
469 481 4.189188 CGTACGGTCAGCGGGAGG 62.189 72.222 7.57 0.00 0.00 4.30
470 482 2.389866 GATCGTACGGTCAGCGGGAG 62.390 65.000 23.27 0.00 0.00 4.30
471 483 2.438975 ATCGTACGGTCAGCGGGA 60.439 61.111 16.52 0.00 0.00 5.14
472 484 2.025727 GATCGTACGGTCAGCGGG 59.974 66.667 23.27 0.00 0.00 6.13
473 485 1.298413 CAGATCGTACGGTCAGCGG 60.298 63.158 28.89 12.34 0.00 5.52
474 486 0.589229 GTCAGATCGTACGGTCAGCG 60.589 60.000 28.89 17.00 0.00 5.18
475 487 0.450583 TGTCAGATCGTACGGTCAGC 59.549 55.000 28.89 18.05 0.00 4.26
476 488 1.738350 AGTGTCAGATCGTACGGTCAG 59.262 52.381 28.89 21.73 0.00 3.51
477 489 1.736126 GAGTGTCAGATCGTACGGTCA 59.264 52.381 28.89 7.91 0.00 4.02
478 490 1.267433 CGAGTGTCAGATCGTACGGTC 60.267 57.143 20.87 20.87 34.30 4.79
479 491 0.725686 CGAGTGTCAGATCGTACGGT 59.274 55.000 16.52 8.53 34.30 4.83
480 492 3.511012 CGAGTGTCAGATCGTACGG 57.489 57.895 16.52 0.00 34.30 4.02
485 497 1.464997 TCTGTCACGAGTGTCAGATCG 59.535 52.381 22.45 5.96 45.71 3.69
489 501 1.413382 GCTTCTGTCACGAGTGTCAG 58.587 55.000 19.35 19.35 44.32 3.51
490 502 0.032130 GGCTTCTGTCACGAGTGTCA 59.968 55.000 2.97 3.24 0.00 3.58
491 503 0.032130 TGGCTTCTGTCACGAGTGTC 59.968 55.000 2.97 0.00 0.00 3.67
492 504 0.249489 GTGGCTTCTGTCACGAGTGT 60.249 55.000 2.97 0.00 39.12 3.55
493 505 2.522060 GTGGCTTCTGTCACGAGTG 58.478 57.895 0.00 0.00 39.12 3.51
498 510 3.050275 GCCCGTGGCTTCTGTCAC 61.050 66.667 7.58 0.00 46.69 3.67
517 529 4.806339 AAGGGAGGGGAGAGGGCG 62.806 72.222 0.00 0.00 0.00 6.13
518 530 1.931180 AAAAGGGAGGGGAGAGGGC 60.931 63.158 0.00 0.00 0.00 5.19
519 531 2.002625 CAAAAGGGAGGGGAGAGGG 58.997 63.158 0.00 0.00 0.00 4.30
520 532 1.210885 AGCAAAAGGGAGGGGAGAGG 61.211 60.000 0.00 0.00 0.00 3.69
521 533 0.254462 GAGCAAAAGGGAGGGGAGAG 59.746 60.000 0.00 0.00 0.00 3.20
522 534 1.208165 GGAGCAAAAGGGAGGGGAGA 61.208 60.000 0.00 0.00 0.00 3.71
523 535 1.304617 GGAGCAAAAGGGAGGGGAG 59.695 63.158 0.00 0.00 0.00 4.30
524 536 2.602676 CGGAGCAAAAGGGAGGGGA 61.603 63.158 0.00 0.00 0.00 4.81
525 537 2.044946 CGGAGCAAAAGGGAGGGG 60.045 66.667 0.00 0.00 0.00 4.79
538 550 0.175760 TTTGAATCGAGGAGGCGGAG 59.824 55.000 0.00 0.00 0.00 4.63
539 551 0.830648 ATTTGAATCGAGGAGGCGGA 59.169 50.000 0.00 0.00 0.00 5.54
540 552 1.668419 AATTTGAATCGAGGAGGCGG 58.332 50.000 0.00 0.00 0.00 6.13
541 553 2.285834 CGAAATTTGAATCGAGGAGGCG 60.286 50.000 0.00 0.00 41.43 5.52
542 554 2.936498 TCGAAATTTGAATCGAGGAGGC 59.064 45.455 0.00 0.00 42.61 4.70
555 567 6.267699 AGAGGGAGGTTCAAATTTCGAAATTT 59.732 34.615 32.93 32.93 46.42 1.82
556 568 5.775195 AGAGGGAGGTTCAAATTTCGAAATT 59.225 36.000 26.51 26.51 40.15 1.82
557 569 5.325239 AGAGGGAGGTTCAAATTTCGAAAT 58.675 37.500 17.60 17.60 0.00 2.17
558 570 4.725490 AGAGGGAGGTTCAAATTTCGAAA 58.275 39.130 13.91 13.91 0.00 3.46
559 571 4.324267 GAGAGGGAGGTTCAAATTTCGAA 58.676 43.478 0.00 0.00 0.00 3.71
560 572 3.616560 CGAGAGGGAGGTTCAAATTTCGA 60.617 47.826 0.00 0.00 0.00 3.71
561 573 2.673368 CGAGAGGGAGGTTCAAATTTCG 59.327 50.000 0.00 0.00 0.00 3.46
562 574 2.420372 GCGAGAGGGAGGTTCAAATTTC 59.580 50.000 0.00 0.00 0.00 2.17
563 575 2.437413 GCGAGAGGGAGGTTCAAATTT 58.563 47.619 0.00 0.00 0.00 1.82
564 576 1.340114 GGCGAGAGGGAGGTTCAAATT 60.340 52.381 0.00 0.00 0.00 1.82
565 577 0.253327 GGCGAGAGGGAGGTTCAAAT 59.747 55.000 0.00 0.00 0.00 2.32
566 578 1.125093 TGGCGAGAGGGAGGTTCAAA 61.125 55.000 0.00 0.00 0.00 2.69
567 579 1.535444 TGGCGAGAGGGAGGTTCAA 60.535 57.895 0.00 0.00 0.00 2.69
568 580 2.119611 TGGCGAGAGGGAGGTTCA 59.880 61.111 0.00 0.00 0.00 3.18
569 581 2.579738 GTGGCGAGAGGGAGGTTC 59.420 66.667 0.00 0.00 0.00 3.62
570 582 3.003763 GGTGGCGAGAGGGAGGTT 61.004 66.667 0.00 0.00 0.00 3.50
571 583 4.316823 TGGTGGCGAGAGGGAGGT 62.317 66.667 0.00 0.00 0.00 3.85
572 584 3.775654 GTGGTGGCGAGAGGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
573 585 2.232298 GAAGTGGTGGCGAGAGGGAG 62.232 65.000 0.00 0.00 0.00 4.30
574 586 2.203788 AAGTGGTGGCGAGAGGGA 60.204 61.111 0.00 0.00 0.00 4.20
575 587 0.970937 TAGAAGTGGTGGCGAGAGGG 60.971 60.000 0.00 0.00 0.00 4.30
576 588 0.173708 GTAGAAGTGGTGGCGAGAGG 59.826 60.000 0.00 0.00 0.00 3.69
577 589 1.178276 AGTAGAAGTGGTGGCGAGAG 58.822 55.000 0.00 0.00 0.00 3.20
578 590 1.544691 GAAGTAGAAGTGGTGGCGAGA 59.455 52.381 0.00 0.00 0.00 4.04
579 591 1.546476 AGAAGTAGAAGTGGTGGCGAG 59.454 52.381 0.00 0.00 0.00 5.03
580 592 1.629043 AGAAGTAGAAGTGGTGGCGA 58.371 50.000 0.00 0.00 0.00 5.54
581 593 2.069273 CAAGAAGTAGAAGTGGTGGCG 58.931 52.381 0.00 0.00 0.00 5.69
582 594 2.038557 TCCAAGAAGTAGAAGTGGTGGC 59.961 50.000 0.00 0.00 0.00 5.01
583 595 3.665190 GTCCAAGAAGTAGAAGTGGTGG 58.335 50.000 0.00 0.00 0.00 4.61
584 596 3.318017 CGTCCAAGAAGTAGAAGTGGTG 58.682 50.000 0.00 0.00 0.00 4.17
585 597 2.299297 CCGTCCAAGAAGTAGAAGTGGT 59.701 50.000 0.00 0.00 0.00 4.16
586 598 2.931320 GCCGTCCAAGAAGTAGAAGTGG 60.931 54.545 0.00 0.00 0.00 4.00
587 599 2.338500 GCCGTCCAAGAAGTAGAAGTG 58.662 52.381 0.00 0.00 0.00 3.16
588 600 1.067776 CGCCGTCCAAGAAGTAGAAGT 60.068 52.381 0.00 0.00 0.00 3.01
589 601 1.630148 CGCCGTCCAAGAAGTAGAAG 58.370 55.000 0.00 0.00 0.00 2.85
590 602 0.245539 CCGCCGTCCAAGAAGTAGAA 59.754 55.000 0.00 0.00 0.00 2.10
591 603 0.896940 ACCGCCGTCCAAGAAGTAGA 60.897 55.000 0.00 0.00 0.00 2.59
592 604 0.458025 GACCGCCGTCCAAGAAGTAG 60.458 60.000 0.00 0.00 32.40 2.57
593 605 1.588082 GACCGCCGTCCAAGAAGTA 59.412 57.895 0.00 0.00 32.40 2.24
594 606 2.342648 GACCGCCGTCCAAGAAGT 59.657 61.111 0.00 0.00 32.40 3.01
595 607 2.809601 CGACCGCCGTCCAAGAAG 60.810 66.667 0.00 0.00 35.40 2.85
596 608 4.367023 CCGACCGCCGTCCAAGAA 62.367 66.667 0.00 0.00 35.40 2.52
604 616 3.291101 TTTTCTCTCCCGACCGCCG 62.291 63.158 0.00 0.00 38.18 6.46
605 617 1.740664 GTTTTCTCTCCCGACCGCC 60.741 63.158 0.00 0.00 0.00 6.13
606 618 1.740664 GGTTTTCTCTCCCGACCGC 60.741 63.158 0.00 0.00 0.00 5.68
607 619 1.079336 GGGTTTTCTCTCCCGACCG 60.079 63.158 0.00 0.00 33.97 4.79
612 624 0.673956 GCTCACGGGTTTTCTCTCCC 60.674 60.000 0.00 0.00 40.26 4.30
613 625 0.321996 AGCTCACGGGTTTTCTCTCC 59.678 55.000 0.00 0.00 0.00 3.71
614 626 2.171341 AAGCTCACGGGTTTTCTCTC 57.829 50.000 0.00 0.00 30.77 3.20
615 627 2.158813 TCAAAGCTCACGGGTTTTCTCT 60.159 45.455 0.00 0.00 42.80 3.10
616 628 2.218603 TCAAAGCTCACGGGTTTTCTC 58.781 47.619 0.00 0.00 42.80 2.87
617 629 2.341846 TCAAAGCTCACGGGTTTTCT 57.658 45.000 0.00 0.00 42.80 2.52
618 630 2.293399 ACATCAAAGCTCACGGGTTTTC 59.707 45.455 0.00 0.00 42.80 2.29
619 631 2.306847 ACATCAAAGCTCACGGGTTTT 58.693 42.857 0.00 0.00 42.80 2.43
620 632 1.981256 ACATCAAAGCTCACGGGTTT 58.019 45.000 0.00 0.00 45.13 3.27
621 633 2.423577 GTACATCAAAGCTCACGGGTT 58.576 47.619 0.00 0.00 37.22 4.11
622 634 1.338769 GGTACATCAAAGCTCACGGGT 60.339 52.381 0.00 0.00 0.00 5.28
623 635 1.369625 GGTACATCAAAGCTCACGGG 58.630 55.000 0.00 0.00 0.00 5.28
624 636 1.338674 TGGGTACATCAAAGCTCACGG 60.339 52.381 0.00 0.00 0.00 4.94
625 637 2.093306 TGGGTACATCAAAGCTCACG 57.907 50.000 0.00 0.00 0.00 4.35
626 638 4.798574 CTTTTGGGTACATCAAAGCTCAC 58.201 43.478 11.60 0.00 35.81 3.51
627 639 3.255642 GCTTTTGGGTACATCAAAGCTCA 59.744 43.478 19.80 5.70 35.81 4.26
628 640 3.670627 CGCTTTTGGGTACATCAAAGCTC 60.671 47.826 22.37 12.13 35.81 4.09
629 641 2.228822 CGCTTTTGGGTACATCAAAGCT 59.771 45.455 22.37 0.00 35.81 3.74
630 642 2.030274 ACGCTTTTGGGTACATCAAAGC 60.030 45.455 18.22 18.22 44.10 3.51
631 643 3.502211 AGACGCTTTTGGGTACATCAAAG 59.498 43.478 11.60 8.76 45.98 2.77
632 644 3.482436 AGACGCTTTTGGGTACATCAAA 58.518 40.909 8.83 8.83 45.98 2.69
633 645 3.134574 AGACGCTTTTGGGTACATCAA 57.865 42.857 0.00 0.00 45.98 2.57
634 646 2.851263 AGACGCTTTTGGGTACATCA 57.149 45.000 0.00 0.00 45.98 3.07
635 647 7.492352 AATATAAGACGCTTTTGGGTACATC 57.508 36.000 0.00 0.00 45.98 3.06
636 648 7.554835 TGAAATATAAGACGCTTTTGGGTACAT 59.445 33.333 0.00 0.00 45.98 2.29
637 649 6.879993 TGAAATATAAGACGCTTTTGGGTACA 59.120 34.615 0.00 0.00 45.98 2.90
638 650 7.148373 TGTGAAATATAAGACGCTTTTGGGTAC 60.148 37.037 0.00 0.00 45.98 3.34
639 651 6.879993 TGTGAAATATAAGACGCTTTTGGGTA 59.120 34.615 0.00 0.00 45.98 3.69
641 653 6.027749 GTGTGAAATATAAGACGCTTTTGGG 58.972 40.000 0.00 0.00 38.45 4.12
642 654 6.607689 TGTGTGAAATATAAGACGCTTTTGG 58.392 36.000 0.00 0.00 0.00 3.28
643 655 8.500837 TTTGTGTGAAATATAAGACGCTTTTG 57.499 30.769 0.00 0.00 0.00 2.44
644 656 9.180678 CTTTTGTGTGAAATATAAGACGCTTTT 57.819 29.630 0.00 0.00 0.00 2.27
645 657 7.807907 CCTTTTGTGTGAAATATAAGACGCTTT 59.192 33.333 0.00 0.00 0.00 3.51
646 658 7.174253 TCCTTTTGTGTGAAATATAAGACGCTT 59.826 33.333 0.00 0.00 0.00 4.68
647 659 6.653320 TCCTTTTGTGTGAAATATAAGACGCT 59.347 34.615 0.00 0.00 0.00 5.07
648 660 6.837992 TCCTTTTGTGTGAAATATAAGACGC 58.162 36.000 0.00 0.00 0.00 5.19
649 661 8.251750 TCTCCTTTTGTGTGAAATATAAGACG 57.748 34.615 0.00 0.00 0.00 4.18
650 662 9.827411 GTTCTCCTTTTGTGTGAAATATAAGAC 57.173 33.333 0.00 0.00 0.00 3.01
651 663 9.793259 AGTTCTCCTTTTGTGTGAAATATAAGA 57.207 29.630 0.00 0.00 0.00 2.10
684 696 8.584157 CCTAAGTCTCATTGTAGATGCTCTTAT 58.416 37.037 0.00 0.00 0.00 1.73
685 697 7.470702 GCCTAAGTCTCATTGTAGATGCTCTTA 60.471 40.741 0.00 0.00 0.00 2.10
686 698 6.685116 GCCTAAGTCTCATTGTAGATGCTCTT 60.685 42.308 0.00 0.00 0.00 2.85
687 699 5.221422 GCCTAAGTCTCATTGTAGATGCTCT 60.221 44.000 0.00 0.00 0.00 4.09
688 700 4.987912 GCCTAAGTCTCATTGTAGATGCTC 59.012 45.833 0.00 0.00 0.00 4.26
689 701 4.202305 GGCCTAAGTCTCATTGTAGATGCT 60.202 45.833 0.00 0.00 0.00 3.79
690 702 4.061596 GGCCTAAGTCTCATTGTAGATGC 58.938 47.826 0.00 0.00 0.00 3.91
691 703 4.101585 TGGGCCTAAGTCTCATTGTAGATG 59.898 45.833 4.53 0.00 0.00 2.90
692 704 4.298626 TGGGCCTAAGTCTCATTGTAGAT 58.701 43.478 4.53 0.00 0.00 1.98
693 705 3.706594 CTGGGCCTAAGTCTCATTGTAGA 59.293 47.826 4.53 0.00 0.00 2.59
694 706 3.452627 ACTGGGCCTAAGTCTCATTGTAG 59.547 47.826 4.53 0.00 0.00 2.74
695 707 3.450904 ACTGGGCCTAAGTCTCATTGTA 58.549 45.455 4.53 0.00 0.00 2.41
696 708 2.269940 ACTGGGCCTAAGTCTCATTGT 58.730 47.619 4.53 0.00 0.00 2.71
697 709 3.054802 AGAACTGGGCCTAAGTCTCATTG 60.055 47.826 4.53 0.00 0.00 2.82
698 710 3.185455 AGAACTGGGCCTAAGTCTCATT 58.815 45.455 4.53 0.00 0.00 2.57
699 711 2.839228 AGAACTGGGCCTAAGTCTCAT 58.161 47.619 4.53 0.00 0.00 2.90
700 712 2.327325 AGAACTGGGCCTAAGTCTCA 57.673 50.000 4.53 0.00 0.00 3.27
701 713 3.704800 AAAGAACTGGGCCTAAGTCTC 57.295 47.619 4.53 10.81 0.00 3.36
702 714 3.756117 CAAAAGAACTGGGCCTAAGTCT 58.244 45.455 4.53 3.99 0.00 3.24
703 715 2.229062 GCAAAAGAACTGGGCCTAAGTC 59.771 50.000 4.53 1.70 0.00 3.01
704 716 2.239400 GCAAAAGAACTGGGCCTAAGT 58.761 47.619 4.53 3.94 0.00 2.24
705 717 1.546029 GGCAAAAGAACTGGGCCTAAG 59.454 52.381 4.53 3.18 41.39 2.18
706 718 1.133325 TGGCAAAAGAACTGGGCCTAA 60.133 47.619 4.53 0.00 44.85 2.69
707 719 0.480690 TGGCAAAAGAACTGGGCCTA 59.519 50.000 4.53 0.00 44.85 3.93
708 720 0.829182 CTGGCAAAAGAACTGGGCCT 60.829 55.000 4.53 0.00 44.85 5.19
709 721 0.827507 TCTGGCAAAAGAACTGGGCC 60.828 55.000 0.00 0.00 44.82 5.80
710 722 1.039856 TTCTGGCAAAAGAACTGGGC 58.960 50.000 0.00 0.00 31.19 5.36
711 723 2.232208 GGATTCTGGCAAAAGAACTGGG 59.768 50.000 0.00 0.00 38.95 4.45
712 724 2.095059 CGGATTCTGGCAAAAGAACTGG 60.095 50.000 0.00 0.00 38.95 4.00
713 725 2.095059 CCGGATTCTGGCAAAAGAACTG 60.095 50.000 0.00 0.15 38.95 3.16
714 726 2.162681 CCGGATTCTGGCAAAAGAACT 58.837 47.619 0.00 0.00 38.95 3.01
715 727 1.202348 CCCGGATTCTGGCAAAAGAAC 59.798 52.381 0.73 0.00 38.95 3.01
716 728 1.544724 CCCGGATTCTGGCAAAAGAA 58.455 50.000 0.73 0.00 40.36 2.52
717 729 0.323360 CCCCGGATTCTGGCAAAAGA 60.323 55.000 0.73 0.00 0.00 2.52
718 730 0.323360 TCCCCGGATTCTGGCAAAAG 60.323 55.000 0.73 0.00 0.00 2.27
719 731 0.334676 ATCCCCGGATTCTGGCAAAA 59.665 50.000 0.73 0.00 0.00 2.44
720 732 0.334676 AATCCCCGGATTCTGGCAAA 59.665 50.000 0.73 0.00 40.44 3.68
721 733 2.006748 AATCCCCGGATTCTGGCAA 58.993 52.632 0.73 0.00 40.44 4.52
722 734 3.754043 AATCCCCGGATTCTGGCA 58.246 55.556 0.73 0.00 40.44 4.92
737 749 1.132500 GGGTCGGATTCTGGGAGAAT 58.868 55.000 0.00 0.00 46.84 2.40
738 750 0.981277 GGGGTCGGATTCTGGGAGAA 60.981 60.000 0.00 0.00 38.78 2.87
739 751 1.382695 GGGGTCGGATTCTGGGAGA 60.383 63.158 0.00 0.00 0.00 3.71
740 752 0.105658 TAGGGGTCGGATTCTGGGAG 60.106 60.000 0.00 0.00 0.00 4.30
741 753 0.398098 GTAGGGGTCGGATTCTGGGA 60.398 60.000 0.00 0.00 0.00 4.37
742 754 1.408453 GGTAGGGGTCGGATTCTGGG 61.408 65.000 0.00 0.00 0.00 4.45
743 755 1.408453 GGGTAGGGGTCGGATTCTGG 61.408 65.000 0.00 0.00 0.00 3.86
744 756 0.689745 TGGGTAGGGGTCGGATTCTG 60.690 60.000 0.00 0.00 0.00 3.02
745 757 0.398664 CTGGGTAGGGGTCGGATTCT 60.399 60.000 0.00 0.00 0.00 2.40
746 758 2.041206 GCTGGGTAGGGGTCGGATTC 62.041 65.000 0.00 0.00 0.00 2.52
747 759 2.070650 GCTGGGTAGGGGTCGGATT 61.071 63.158 0.00 0.00 0.00 3.01
748 760 2.446036 GCTGGGTAGGGGTCGGAT 60.446 66.667 0.00 0.00 0.00 4.18
749 761 3.248248 AAGCTGGGTAGGGGTCGGA 62.248 63.158 0.00 0.00 0.00 4.55
750 762 2.687566 AAGCTGGGTAGGGGTCGG 60.688 66.667 0.00 0.00 0.00 4.79
751 763 1.677637 GAGAAGCTGGGTAGGGGTCG 61.678 65.000 0.00 0.00 0.00 4.79
752 764 1.338890 GGAGAAGCTGGGTAGGGGTC 61.339 65.000 0.00 0.00 0.00 4.46
753 765 1.307084 GGAGAAGCTGGGTAGGGGT 60.307 63.158 0.00 0.00 0.00 4.95
754 766 2.073101 GGGAGAAGCTGGGTAGGGG 61.073 68.421 0.00 0.00 0.00 4.79
755 767 1.306997 TGGGAGAAGCTGGGTAGGG 60.307 63.158 0.00 0.00 0.00 3.53
756 768 0.325671 TCTGGGAGAAGCTGGGTAGG 60.326 60.000 0.00 0.00 0.00 3.18
757 769 1.573108 TTCTGGGAGAAGCTGGGTAG 58.427 55.000 0.00 0.00 29.50 3.18
758 770 2.119495 GATTCTGGGAGAAGCTGGGTA 58.881 52.381 0.00 0.00 37.62 3.69
759 771 0.915364 GATTCTGGGAGAAGCTGGGT 59.085 55.000 0.00 0.00 37.62 4.51
760 772 3.796764 GATTCTGGGAGAAGCTGGG 57.203 57.895 0.00 0.00 37.62 4.45
764 776 2.682352 GCTCAAAGATTCTGGGAGAAGC 59.318 50.000 15.41 0.00 40.68 3.86
765 777 4.219264 AGCTCAAAGATTCTGGGAGAAG 57.781 45.455 15.41 0.00 37.69 2.85
766 778 4.532126 TGTAGCTCAAAGATTCTGGGAGAA 59.468 41.667 15.41 0.00 38.78 2.87
767 779 4.096681 TGTAGCTCAAAGATTCTGGGAGA 58.903 43.478 15.41 0.14 0.00 3.71
768 780 4.478206 TGTAGCTCAAAGATTCTGGGAG 57.522 45.455 0.00 9.42 0.00 4.30
769 781 5.441718 AATGTAGCTCAAAGATTCTGGGA 57.558 39.130 0.00 0.00 0.00 4.37
770 782 7.630242 TTAAATGTAGCTCAAAGATTCTGGG 57.370 36.000 0.00 0.00 0.00 4.45
771 783 9.346725 GTTTTAAATGTAGCTCAAAGATTCTGG 57.653 33.333 0.00 0.00 0.00 3.86
772 784 9.897744 TGTTTTAAATGTAGCTCAAAGATTCTG 57.102 29.630 0.00 0.00 0.00 3.02
777 789 9.862371 TGTTTTGTTTTAAATGTAGCTCAAAGA 57.138 25.926 0.00 0.00 0.00 2.52
779 791 9.862371 TCTGTTTTGTTTTAAATGTAGCTCAAA 57.138 25.926 0.00 0.00 0.00 2.69
780 792 9.515020 CTCTGTTTTGTTTTAAATGTAGCTCAA 57.485 29.630 0.00 0.00 0.00 3.02
781 793 8.134895 CCTCTGTTTTGTTTTAAATGTAGCTCA 58.865 33.333 0.00 0.00 0.00 4.26
782 794 7.114953 GCCTCTGTTTTGTTTTAAATGTAGCTC 59.885 37.037 0.00 0.00 0.00 4.09
783 795 6.923508 GCCTCTGTTTTGTTTTAAATGTAGCT 59.076 34.615 0.00 0.00 0.00 3.32
784 796 6.923508 AGCCTCTGTTTTGTTTTAAATGTAGC 59.076 34.615 0.00 0.00 0.00 3.58
785 797 7.382218 CCAGCCTCTGTTTTGTTTTAAATGTAG 59.618 37.037 0.00 0.00 0.00 2.74
786 798 7.206687 CCAGCCTCTGTTTTGTTTTAAATGTA 58.793 34.615 0.00 0.00 0.00 2.29
787 799 6.048509 CCAGCCTCTGTTTTGTTTTAAATGT 58.951 36.000 0.00 0.00 0.00 2.71
850 862 3.550992 CCGATCGAACGGCCAACG 61.551 66.667 21.56 5.10 46.20 4.10
866 878 2.793278 AAAAAGACATGGTCAACGCC 57.207 45.000 0.00 0.00 34.60 5.68
919 931 0.865769 AGGTAAAAACGAGTGCGCAG 59.134 50.000 12.22 0.60 42.48 5.18
928 940 1.657094 CGATCCACCGAGGTAAAAACG 59.343 52.381 0.00 0.00 39.02 3.60
929 941 2.414138 CACGATCCACCGAGGTAAAAAC 59.586 50.000 0.00 0.00 39.02 2.43
936 948 4.873129 CGCCACGATCCACCGAGG 62.873 72.222 0.00 0.00 42.01 4.63
943 957 2.029666 CATCCCTCGCCACGATCC 59.970 66.667 0.00 0.00 34.61 3.36
948 962 2.509336 CACGTCATCCCTCGCCAC 60.509 66.667 0.00 0.00 0.00 5.01
973 987 0.458370 GATCCAAATGGCCACAACGC 60.458 55.000 8.16 0.00 34.44 4.84
976 990 1.916506 TTCGATCCAAATGGCCACAA 58.083 45.000 8.16 0.00 34.44 3.33
985 999 0.958382 CCCAGCCGTTTCGATCCAAA 60.958 55.000 0.00 0.00 0.00 3.28
1002 1016 0.389025 CACCAGGAAAAGCAACACCC 59.611 55.000 0.00 0.00 0.00 4.61
1084 1098 2.492090 GTTTGTGCGGTTGTGCCA 59.508 55.556 0.00 0.00 36.97 4.92
1085 1099 2.279186 GGTTTGTGCGGTTGTGCC 60.279 61.111 0.00 0.00 0.00 5.01
1086 1100 1.448922 TAGGGTTTGTGCGGTTGTGC 61.449 55.000 0.00 0.00 0.00 4.57
1087 1101 0.309612 GTAGGGTTTGTGCGGTTGTG 59.690 55.000 0.00 0.00 0.00 3.33
1088 1102 0.820482 GGTAGGGTTTGTGCGGTTGT 60.820 55.000 0.00 0.00 0.00 3.32
1089 1103 1.520600 GGGTAGGGTTTGTGCGGTTG 61.521 60.000 0.00 0.00 0.00 3.77
1090 1104 1.228337 GGGTAGGGTTTGTGCGGTT 60.228 57.895 0.00 0.00 0.00 4.44
1091 1105 2.433004 GGGTAGGGTTTGTGCGGT 59.567 61.111 0.00 0.00 0.00 5.68
1092 1106 2.360726 GGGGTAGGGTTTGTGCGG 60.361 66.667 0.00 0.00 0.00 5.69
1093 1107 2.360726 GGGGGTAGGGTTTGTGCG 60.361 66.667 0.00 0.00 0.00 5.34
1104 1118 1.774894 GCGGCTATGGATTGGGGGTA 61.775 60.000 0.00 0.00 0.00 3.69
1127 1141 0.340208 GAAAGAGGAGGAGGGAGGGA 59.660 60.000 0.00 0.00 0.00 4.20
1142 1156 1.219393 GGCAGACGAGGGAGGAAAG 59.781 63.158 0.00 0.00 0.00 2.62
1169 1183 4.816984 GCGACGAGGAGGGAGGGA 62.817 72.222 0.00 0.00 0.00 4.20
1191 1205 3.066814 GGCAAAGCTGGGCAGAGG 61.067 66.667 11.49 0.00 0.00 3.69
1216 1230 1.587613 GATGAGAGGACGAGCGTGC 60.588 63.158 6.41 6.41 36.69 5.34
1218 1232 1.098712 GGAGATGAGAGGACGAGCGT 61.099 60.000 0.00 0.00 0.00 5.07
1255 1269 0.267960 TCCTCCTTCCCCTACATCCC 59.732 60.000 0.00 0.00 0.00 3.85
1262 1276 2.689034 CGGCTTCCTCCTTCCCCT 60.689 66.667 0.00 0.00 0.00 4.79
1266 1280 0.105778 CATCTCCGGCTTCCTCCTTC 59.894 60.000 0.00 0.00 0.00 3.46
1971 2098 7.885297 ACATAACTGTTTGCATATTCAACACT 58.115 30.769 0.00 0.00 28.70 3.55
2099 2262 5.570205 TGGAAATAAGACACACTTGGGTA 57.430 39.130 0.00 0.00 39.38 3.69
3091 10871 7.765819 AGAAAGGACCAATTTTGACAAGAAAAG 59.234 33.333 0.00 0.00 0.00 2.27
3107 10887 4.407621 TCAACAAGTACAGAGAAAGGACCA 59.592 41.667 0.00 0.00 0.00 4.02
3214 11387 6.494835 ACCAATGTAAAGAAGAGCTTGGAATT 59.505 34.615 5.49 0.00 36.80 2.17
3218 11391 4.761739 TCACCAATGTAAAGAAGAGCTTGG 59.238 41.667 0.00 0.00 36.80 3.61
3383 11563 3.349927 TGGACCAGCTTTCATTCATGAG 58.650 45.455 0.00 0.00 38.19 2.90
3565 11749 4.484236 CTGACAACAACAAAAAGCACTCA 58.516 39.130 0.00 0.00 0.00 3.41
3566 11750 3.304293 GCTGACAACAACAAAAAGCACTC 59.696 43.478 0.00 0.00 0.00 3.51
4122 12329 1.342819 GCTATTGGTCTCGGAGCATCT 59.657 52.381 0.00 1.91 39.81 2.90
4261 12470 2.632512 CAATTGTGGGGGCTAACTTGTT 59.367 45.455 0.00 0.00 0.00 2.83
4449 14628 6.737720 TCCTGCTCATTAGTATGACAAGAT 57.262 37.500 0.00 0.00 35.87 2.40
4582 15500 1.002134 CCACGACAATGCCCCTTCT 60.002 57.895 0.00 0.00 0.00 2.85
4583 15501 0.893727 AACCACGACAATGCCCCTTC 60.894 55.000 0.00 0.00 0.00 3.46
4584 15502 1.152830 AACCACGACAATGCCCCTT 59.847 52.632 0.00 0.00 0.00 3.95
4634 15552 4.446600 GGTTATCATCAAATCCCCCGGTAA 60.447 45.833 0.00 0.00 0.00 2.85
4635 15553 3.073356 GGTTATCATCAAATCCCCCGGTA 59.927 47.826 0.00 0.00 0.00 4.02
4637 15555 2.514803 GGTTATCATCAAATCCCCCGG 58.485 52.381 0.00 0.00 0.00 5.73
4638 15556 2.514803 GGGTTATCATCAAATCCCCCG 58.485 52.381 0.00 0.00 0.00 5.73
4639 15557 2.889512 GGGGTTATCATCAAATCCCCC 58.110 52.381 5.84 0.00 46.35 5.40
4658 15576 1.888512 CAAAGTGACATGAACTGGGGG 59.111 52.381 0.00 0.00 0.00 5.40
4659 15577 2.862541 TCAAAGTGACATGAACTGGGG 58.137 47.619 0.00 0.00 0.00 4.96
4661 15579 5.892160 ATGATCAAAGTGACATGAACTGG 57.108 39.130 0.00 0.00 0.00 4.00
4662 15580 7.246311 GGTTATGATCAAAGTGACATGAACTG 58.754 38.462 0.00 0.00 0.00 3.16
4663 15581 6.375455 GGGTTATGATCAAAGTGACATGAACT 59.625 38.462 0.00 0.00 0.00 3.01
4664 15582 6.404734 GGGGTTATGATCAAAGTGACATGAAC 60.405 42.308 0.00 0.00 0.00 3.18
4666 15584 5.192927 GGGGTTATGATCAAAGTGACATGA 58.807 41.667 0.00 0.00 0.00 3.07
4667 15585 5.505173 GGGGTTATGATCAAAGTGACATG 57.495 43.478 0.00 0.00 0.00 3.21
5082 16001 2.362120 GCCCAAGCAGCCATCAGT 60.362 61.111 0.00 0.00 39.53 3.41
5279 16198 7.436430 TGTTTGAGCAAATACATACGGTAAA 57.564 32.000 0.00 0.00 35.14 2.01
5529 16459 2.964464 ACCAAAGCCATGTTGTTGATGA 59.036 40.909 0.00 0.00 0.00 2.92
5534 16464 0.758123 CCCACCAAAGCCATGTTGTT 59.242 50.000 0.00 0.00 0.00 2.83
5575 16505 1.003118 ACCAGTGCAATTTCTCGCCTA 59.997 47.619 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.