Multiple sequence alignment - TraesCS5B01G023500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G023500 chr5B 100.000 3797 0 0 417 4213 21634734 21638530 0.000000e+00 7012.0
1 TraesCS5B01G023500 chr5B 86.151 1408 138 26 995 2351 15266336 15264935 0.000000e+00 1467.0
2 TraesCS5B01G023500 chr5B 100.000 90 0 0 1 90 21634318 21634407 2.610000e-37 167.0
3 TraesCS5B01G023500 chr5B 92.784 97 2 1 3652 3748 278243564 278243655 7.350000e-28 135.0
4 TraesCS5B01G023500 chr5D 95.341 2232 77 11 866 3094 29503047 29505254 0.000000e+00 3520.0
5 TraesCS5B01G023500 chr5D 85.765 2234 198 44 998 3152 21672122 21674314 0.000000e+00 2254.0
6 TraesCS5B01G023500 chr5D 94.353 425 6 3 3093 3517 29505415 29505821 1.650000e-178 636.0
7 TraesCS5B01G023500 chr5D 88.116 345 26 10 2947 3289 29515705 29516036 3.050000e-106 396.0
8 TraesCS5B01G023500 chr5D 88.256 281 13 8 3748 4023 29505906 29506171 6.800000e-83 318.0
9 TraesCS5B01G023500 chr5D 92.632 190 6 5 4029 4213 29506222 29506408 2.500000e-67 267.0
10 TraesCS5B01G023500 chr5D 94.194 155 9 0 713 867 29502858 29503012 1.960000e-58 237.0
11 TraesCS5B01G023500 chr5D 91.818 110 2 2 3555 3663 29505822 29505925 3.390000e-31 147.0
12 TraesCS5B01G023500 chr5D 84.848 132 13 6 736 867 22374524 22374400 4.420000e-25 126.0
13 TraesCS5B01G023500 chr5D 98.529 68 1 0 417 484 29502759 29502826 2.060000e-23 121.0
14 TraesCS5B01G023500 chr5D 100.000 57 0 0 636 692 29502806 29502862 5.760000e-19 106.0
15 TraesCS5B01G023500 chr5D 100.000 29 0 0 1 29 29502412 29502440 2.000000e-03 54.7
16 TraesCS5B01G023500 chr2A 86.511 1542 152 32 994 2494 574169357 574167831 0.000000e+00 1644.0
17 TraesCS5B01G023500 chr5A 85.520 1326 126 26 995 2262 15035721 15037038 0.000000e+00 1325.0
18 TraesCS5B01G023500 chr5A 88.589 333 20 9 2444 2769 15037630 15037951 5.110000e-104 388.0
19 TraesCS5B01G023500 chr5A 85.303 347 29 6 2948 3289 20192267 20192596 5.220000e-89 339.0
20 TraesCS5B01G023500 chr5A 92.973 185 7 4 4029 4213 20190671 20190849 8.980000e-67 265.0
21 TraesCS5B01G023500 chr5A 90.184 163 11 3 709 867 20189365 20189526 1.540000e-49 207.0
22 TraesCS5B01G023500 chr5A 98.684 76 1 0 866 941 20190183 20190258 7.350000e-28 135.0
23 TraesCS5B01G023500 chr5A 90.722 97 3 2 3652 3748 614328840 614328930 1.590000e-24 124.0
24 TraesCS5B01G023500 chr7B 95.395 152 7 0 486 637 700862056 700861905 4.210000e-60 243.0
25 TraesCS5B01G023500 chr7B 91.503 153 10 3 486 637 95002208 95002358 1.540000e-49 207.0
26 TraesCS5B01G023500 chr7B 92.553 94 2 2 3652 3745 15100175 15100263 3.420000e-26 130.0
27 TraesCS5B01G023500 chr7B 91.837 98 1 2 3655 3751 687680490 687680399 3.420000e-26 130.0
28 TraesCS5B01G023500 chr4D 95.395 152 7 0 486 637 12272806 12272957 4.210000e-60 243.0
29 TraesCS5B01G023500 chr4D 94.268 157 9 0 481 637 64623990 64624146 1.510000e-59 241.0
30 TraesCS5B01G023500 chr7D 94.304 158 8 1 481 637 477202558 477202715 1.510000e-59 241.0
31 TraesCS5B01G023500 chr2D 94.737 152 8 0 486 637 537305144 537304993 1.960000e-58 237.0
32 TraesCS5B01G023500 chr2B 93.590 156 10 0 483 638 645488084 645488239 2.530000e-57 233.0
33 TraesCS5B01G023500 chr2B 93.814 97 1 1 3652 3748 128340083 128340174 1.580000e-29 141.0
34 TraesCS5B01G023500 chr4A 91.837 147 12 0 485 631 578548509 578548655 5.520000e-49 206.0
35 TraesCS5B01G023500 chr6D 85.714 154 19 3 486 637 16801746 16801898 4.360000e-35 159.0
36 TraesCS5B01G023500 chr6B 90.566 106 6 1 3652 3757 680510349 680510248 2.040000e-28 137.0
37 TraesCS5B01G023500 chrUn 91.753 97 3 1 3652 3748 66391495 66391586 3.420000e-26 130.0
38 TraesCS5B01G023500 chr4B 88.679 106 7 1 3652 3757 220109429 220109329 1.590000e-24 124.0
39 TraesCS5B01G023500 chr3B 90.722 97 3 2 3652 3748 177913831 177913741 1.590000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G023500 chr5B 21634318 21638530 4212 False 3589.500000 7012 100.000000 1 4213 2 chr5B.!!$F2 4212
1 TraesCS5B01G023500 chr5B 15264935 15266336 1401 True 1467.000000 1467 86.151000 995 2351 1 chr5B.!!$R1 1356
2 TraesCS5B01G023500 chr5D 21672122 21674314 2192 False 2254.000000 2254 85.765000 998 3152 1 chr5D.!!$F1 2154
3 TraesCS5B01G023500 chr5D 29502412 29506408 3996 False 600.744444 3520 95.013667 1 4213 9 chr5D.!!$F3 4212
4 TraesCS5B01G023500 chr2A 574167831 574169357 1526 True 1644.000000 1644 86.511000 994 2494 1 chr2A.!!$R1 1500
5 TraesCS5B01G023500 chr5A 15035721 15037951 2230 False 856.500000 1325 87.054500 995 2769 2 chr5A.!!$F2 1774
6 TraesCS5B01G023500 chr5A 20189365 20192596 3231 False 236.500000 339 91.786000 709 4213 4 chr5A.!!$F3 3504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 732 0.037975 GGCTGGCCAAGACAAACATG 60.038 55.0 7.01 0.0 32.10 3.21 F
1200 2242 0.107017 CCGGCCATGTCTTCTTCCAT 60.107 55.0 2.24 0.0 0.00 3.41 F
1431 2485 0.739813 AGTTTACCATCGCCGTGCTC 60.740 55.0 0.00 0.0 0.00 4.26 F
2158 3254 0.877071 ATGGCTTCTTGCTGTTGACG 59.123 50.0 0.00 0.0 42.39 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 3254 0.040425 CGTACTTGCTTGTTGGCCAC 60.040 55.0 3.88 0.75 0.00 5.01 R
2525 4079 0.798776 AACAATCTTCAAGCGAGGCG 59.201 50.0 0.00 0.00 0.00 5.52 R
3174 6362 1.199624 GCAGTTTGTTCCGCAGTTTG 58.800 50.0 0.00 0.00 0.00 2.93 R
4051 7292 0.030504 CGGCATCAGCAAAACACACA 59.969 50.0 0.00 0.00 44.61 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 208 0.600255 GGCCATCGTGATTAGGGTCG 60.600 60.000 0.00 0.00 0.00 4.79
54 214 1.822990 TCGTGATTAGGGTCGCTCTTT 59.177 47.619 0.00 0.00 0.00 2.52
452 612 0.114364 ATTCCGGGCTCAAGGGTTTT 59.886 50.000 0.00 0.00 0.00 2.43
480 640 1.276421 CCAGATGTTCCTCCGACTTGT 59.724 52.381 0.00 0.00 0.00 3.16
481 641 2.289694 CCAGATGTTCCTCCGACTTGTT 60.290 50.000 0.00 0.00 0.00 2.83
482 642 3.403038 CAGATGTTCCTCCGACTTGTTT 58.597 45.455 0.00 0.00 0.00 2.83
483 643 3.815401 CAGATGTTCCTCCGACTTGTTTT 59.185 43.478 0.00 0.00 0.00 2.43
484 644 4.275936 CAGATGTTCCTCCGACTTGTTTTT 59.724 41.667 0.00 0.00 0.00 1.94
516 676 7.707624 AGGAATGAAAGCACTTTATTGATCA 57.292 32.000 0.00 0.00 32.11 2.92
517 677 8.125978 AGGAATGAAAGCACTTTATTGATCAA 57.874 30.769 11.26 11.26 32.11 2.57
518 678 8.587608 AGGAATGAAAGCACTTTATTGATCAAA 58.412 29.630 13.09 0.00 32.11 2.69
519 679 9.374838 GGAATGAAAGCACTTTATTGATCAAAT 57.625 29.630 13.09 4.08 32.11 2.32
522 682 8.761575 TGAAAGCACTTTATTGATCAAATTCC 57.238 30.769 13.09 0.00 32.11 3.01
523 683 8.366401 TGAAAGCACTTTATTGATCAAATTCCA 58.634 29.630 13.09 0.00 32.11 3.53
524 684 8.538409 AAAGCACTTTATTGATCAAATTCCAC 57.462 30.769 13.09 0.16 0.00 4.02
525 685 7.230849 AGCACTTTATTGATCAAATTCCACA 57.769 32.000 13.09 0.00 0.00 4.17
526 686 7.318141 AGCACTTTATTGATCAAATTCCACAG 58.682 34.615 13.09 4.70 0.00 3.66
527 687 7.177216 AGCACTTTATTGATCAAATTCCACAGA 59.823 33.333 13.09 0.00 0.00 3.41
528 688 7.814107 GCACTTTATTGATCAAATTCCACAGAA 59.186 33.333 13.09 0.00 36.15 3.02
529 689 9.350357 CACTTTATTGATCAAATTCCACAGAAG 57.650 33.333 13.09 8.36 34.86 2.85
530 690 8.526147 ACTTTATTGATCAAATTCCACAGAAGG 58.474 33.333 13.09 0.00 34.86 3.46
531 691 8.421249 TTTATTGATCAAATTCCACAGAAGGT 57.579 30.769 13.09 0.00 34.86 3.50
543 703 4.021102 CACAGAAGGTGGGATACAAACT 57.979 45.455 0.00 0.00 44.04 2.66
544 704 3.753272 CACAGAAGGTGGGATACAAACTG 59.247 47.826 0.00 0.00 44.04 3.16
545 705 3.244911 ACAGAAGGTGGGATACAAACTGG 60.245 47.826 0.00 0.00 39.74 4.00
546 706 3.009033 CAGAAGGTGGGATACAAACTGGA 59.991 47.826 0.00 0.00 39.74 3.86
547 707 3.852578 AGAAGGTGGGATACAAACTGGAT 59.147 43.478 0.00 0.00 39.74 3.41
548 708 3.933861 AGGTGGGATACAAACTGGATC 57.066 47.619 0.00 0.00 36.98 3.36
549 709 3.189606 AGGTGGGATACAAACTGGATCA 58.810 45.455 1.45 0.00 39.50 2.92
550 710 3.788142 AGGTGGGATACAAACTGGATCAT 59.212 43.478 1.45 0.00 39.50 2.45
551 711 3.885297 GGTGGGATACAAACTGGATCATG 59.115 47.826 1.45 0.00 39.50 3.07
552 712 4.526970 GTGGGATACAAACTGGATCATGT 58.473 43.478 1.45 0.00 39.50 3.21
553 713 4.336433 GTGGGATACAAACTGGATCATGTG 59.664 45.833 1.45 0.00 39.50 3.21
554 714 3.885297 GGGATACAAACTGGATCATGTGG 59.115 47.826 1.45 0.00 39.50 4.17
555 715 3.316308 GGATACAAACTGGATCATGTGGC 59.684 47.826 1.45 0.00 39.50 5.01
556 716 2.592102 ACAAACTGGATCATGTGGCT 57.408 45.000 0.00 0.00 0.00 4.75
557 717 2.165167 ACAAACTGGATCATGTGGCTG 58.835 47.619 0.00 0.00 0.00 4.85
558 718 1.475280 CAAACTGGATCATGTGGCTGG 59.525 52.381 0.00 0.00 0.00 4.85
559 719 0.682209 AACTGGATCATGTGGCTGGC 60.682 55.000 0.00 0.00 0.00 4.85
560 720 1.826921 CTGGATCATGTGGCTGGCC 60.827 63.158 4.43 4.43 0.00 5.36
561 721 2.276409 GGATCATGTGGCTGGCCA 59.724 61.111 10.55 10.55 45.02 5.36
569 729 3.854856 TGGCTGGCCAAGACAAAC 58.145 55.556 12.27 0.00 42.72 2.93
570 730 1.076412 TGGCTGGCCAAGACAAACA 60.076 52.632 12.27 0.00 42.72 2.83
571 731 0.469705 TGGCTGGCCAAGACAAACAT 60.470 50.000 12.27 0.00 42.72 2.71
572 732 0.037975 GGCTGGCCAAGACAAACATG 60.038 55.000 7.01 0.00 32.10 3.21
573 733 0.961019 GCTGGCCAAGACAAACATGA 59.039 50.000 7.01 0.00 0.00 3.07
574 734 1.336240 GCTGGCCAAGACAAACATGAC 60.336 52.381 7.01 0.00 0.00 3.06
575 735 0.950836 TGGCCAAGACAAACATGACG 59.049 50.000 0.61 0.00 0.00 4.35
576 736 0.387239 GGCCAAGACAAACATGACGC 60.387 55.000 0.00 0.00 0.00 5.19
577 737 0.387239 GCCAAGACAAACATGACGCC 60.387 55.000 0.00 0.00 0.00 5.68
578 738 0.240945 CCAAGACAAACATGACGCCC 59.759 55.000 0.00 0.00 0.00 6.13
579 739 0.240945 CAAGACAAACATGACGCCCC 59.759 55.000 0.00 0.00 0.00 5.80
580 740 1.234615 AAGACAAACATGACGCCCCG 61.235 55.000 0.00 0.00 0.00 5.73
581 741 2.671619 ACAAACATGACGCCCCGG 60.672 61.111 0.00 0.00 0.00 5.73
582 742 2.359354 CAAACATGACGCCCCGGA 60.359 61.111 0.73 0.00 0.00 5.14
583 743 2.046314 AAACATGACGCCCCGGAG 60.046 61.111 0.73 0.00 0.00 4.63
584 744 2.890766 AAACATGACGCCCCGGAGT 61.891 57.895 0.73 0.00 0.00 3.85
585 745 2.406002 AAACATGACGCCCCGGAGTT 62.406 55.000 0.73 0.00 0.00 3.01
586 746 1.546589 AACATGACGCCCCGGAGTTA 61.547 55.000 0.73 0.00 0.00 2.24
587 747 1.227263 CATGACGCCCCGGAGTTAG 60.227 63.158 0.73 0.00 0.00 2.34
588 748 2.432300 ATGACGCCCCGGAGTTAGG 61.432 63.158 0.73 0.00 0.00 2.69
589 749 3.073101 GACGCCCCGGAGTTAGGT 61.073 66.667 0.73 0.00 0.00 3.08
590 750 2.605601 ACGCCCCGGAGTTAGGTT 60.606 61.111 0.73 0.00 0.00 3.50
591 751 2.176314 GACGCCCCGGAGTTAGGTTT 62.176 60.000 0.73 0.00 0.00 3.27
592 752 1.449070 CGCCCCGGAGTTAGGTTTC 60.449 63.158 0.73 0.00 0.00 2.78
593 753 1.896122 CGCCCCGGAGTTAGGTTTCT 61.896 60.000 0.73 0.00 0.00 2.52
594 754 1.197812 GCCCCGGAGTTAGGTTTCTA 58.802 55.000 0.73 0.00 0.00 2.10
595 755 1.138464 GCCCCGGAGTTAGGTTTCTAG 59.862 57.143 0.73 0.00 0.00 2.43
596 756 1.138464 CCCCGGAGTTAGGTTTCTAGC 59.862 57.143 0.73 0.00 0.00 3.42
597 757 1.829222 CCCGGAGTTAGGTTTCTAGCA 59.171 52.381 0.73 0.00 0.00 3.49
598 758 2.235402 CCCGGAGTTAGGTTTCTAGCAA 59.765 50.000 0.73 0.00 0.00 3.91
599 759 3.307199 CCCGGAGTTAGGTTTCTAGCAAA 60.307 47.826 0.73 0.00 0.00 3.68
600 760 4.514401 CCGGAGTTAGGTTTCTAGCAAAT 58.486 43.478 0.00 0.00 0.00 2.32
601 761 4.941873 CCGGAGTTAGGTTTCTAGCAAATT 59.058 41.667 0.00 0.00 0.00 1.82
602 762 5.414765 CCGGAGTTAGGTTTCTAGCAAATTT 59.585 40.000 0.00 0.00 0.00 1.82
603 763 6.072119 CCGGAGTTAGGTTTCTAGCAAATTTT 60.072 38.462 0.00 0.00 0.00 1.82
604 764 6.801862 CGGAGTTAGGTTTCTAGCAAATTTTG 59.198 38.462 4.72 4.72 0.00 2.44
618 778 5.904362 CAAATTTTGCTAACCTAGGAGCT 57.096 39.130 17.98 1.63 39.54 4.09
619 779 6.272822 CAAATTTTGCTAACCTAGGAGCTT 57.727 37.500 17.98 1.48 39.54 3.74
620 780 6.325596 CAAATTTTGCTAACCTAGGAGCTTC 58.674 40.000 17.98 0.83 39.54 3.86
621 781 2.961526 TTGCTAACCTAGGAGCTTCG 57.038 50.000 17.98 0.00 39.54 3.79
622 782 2.139323 TGCTAACCTAGGAGCTTCGA 57.861 50.000 17.98 0.00 39.54 3.71
623 783 1.749634 TGCTAACCTAGGAGCTTCGAC 59.250 52.381 17.98 0.00 39.54 4.20
624 784 1.749634 GCTAACCTAGGAGCTTCGACA 59.250 52.381 17.98 0.00 35.73 4.35
625 785 2.362717 GCTAACCTAGGAGCTTCGACAT 59.637 50.000 17.98 0.00 35.73 3.06
626 786 3.181474 GCTAACCTAGGAGCTTCGACATT 60.181 47.826 17.98 0.00 35.73 2.71
627 787 4.037684 GCTAACCTAGGAGCTTCGACATTA 59.962 45.833 17.98 0.00 35.73 1.90
628 788 5.451520 GCTAACCTAGGAGCTTCGACATTAA 60.452 44.000 17.98 0.00 35.73 1.40
629 789 4.388378 ACCTAGGAGCTTCGACATTAAC 57.612 45.455 17.98 0.00 0.00 2.01
630 790 3.767673 ACCTAGGAGCTTCGACATTAACA 59.232 43.478 17.98 0.00 0.00 2.41
631 791 4.142138 ACCTAGGAGCTTCGACATTAACAG 60.142 45.833 17.98 0.00 0.00 3.16
632 792 3.963428 AGGAGCTTCGACATTAACAGT 57.037 42.857 0.00 0.00 0.00 3.55
633 793 5.067413 CCTAGGAGCTTCGACATTAACAGTA 59.933 44.000 1.05 0.00 0.00 2.74
634 794 4.745649 AGGAGCTTCGACATTAACAGTAC 58.254 43.478 0.00 0.00 0.00 2.73
635 795 3.546670 GGAGCTTCGACATTAACAGTACG 59.453 47.826 0.00 0.00 0.00 3.67
636 796 4.409570 GAGCTTCGACATTAACAGTACGA 58.590 43.478 0.00 0.00 0.00 3.43
637 797 4.995124 AGCTTCGACATTAACAGTACGAT 58.005 39.130 0.00 0.00 0.00 3.73
638 798 4.798907 AGCTTCGACATTAACAGTACGATG 59.201 41.667 0.00 0.00 0.00 3.84
639 799 4.561606 GCTTCGACATTAACAGTACGATGT 59.438 41.667 0.00 0.00 35.57 3.06
640 800 5.061808 GCTTCGACATTAACAGTACGATGTT 59.938 40.000 5.87 5.87 45.19 2.71
641 801 6.621737 TTCGACATTAACAGTACGATGTTC 57.378 37.500 3.94 0.00 42.33 3.18
642 802 5.097529 TCGACATTAACAGTACGATGTTCC 58.902 41.667 3.94 0.00 42.33 3.62
643 803 5.100259 CGACATTAACAGTACGATGTTCCT 58.900 41.667 3.94 0.00 42.33 3.36
644 804 5.229469 CGACATTAACAGTACGATGTTCCTC 59.771 44.000 3.94 0.00 42.33 3.71
645 805 5.416947 ACATTAACAGTACGATGTTCCTCC 58.583 41.667 3.94 0.00 42.33 4.30
646 806 2.649331 AACAGTACGATGTTCCTCCG 57.351 50.000 0.00 0.00 39.13 4.63
647 807 1.830279 ACAGTACGATGTTCCTCCGA 58.170 50.000 0.00 0.00 0.00 4.55
648 808 1.471684 ACAGTACGATGTTCCTCCGAC 59.528 52.381 0.00 0.00 0.00 4.79
649 809 1.743958 CAGTACGATGTTCCTCCGACT 59.256 52.381 0.00 0.00 0.00 4.18
650 810 2.163815 CAGTACGATGTTCCTCCGACTT 59.836 50.000 0.00 0.00 0.00 3.01
651 811 2.163815 AGTACGATGTTCCTCCGACTTG 59.836 50.000 0.00 0.00 0.00 3.16
692 852 2.095059 AGAACGTGATGCTTTCCAATGC 60.095 45.455 0.00 0.00 0.00 3.56
693 853 0.527565 ACGTGATGCTTTCCAATGCC 59.472 50.000 0.00 0.00 0.00 4.40
694 854 0.813184 CGTGATGCTTTCCAATGCCT 59.187 50.000 0.00 0.00 0.00 4.75
695 855 1.202222 CGTGATGCTTTCCAATGCCTC 60.202 52.381 0.00 0.00 0.00 4.70
696 856 1.135721 GTGATGCTTTCCAATGCCTCC 59.864 52.381 0.00 0.00 0.00 4.30
697 857 1.006281 TGATGCTTTCCAATGCCTCCT 59.994 47.619 0.00 0.00 0.00 3.69
698 858 2.241941 TGATGCTTTCCAATGCCTCCTA 59.758 45.455 0.00 0.00 0.00 2.94
699 859 2.425143 TGCTTTCCAATGCCTCCTAG 57.575 50.000 0.00 0.00 0.00 3.02
700 860 1.635487 TGCTTTCCAATGCCTCCTAGT 59.365 47.619 0.00 0.00 0.00 2.57
701 861 2.843730 TGCTTTCCAATGCCTCCTAGTA 59.156 45.455 0.00 0.00 0.00 1.82
702 862 3.206964 GCTTTCCAATGCCTCCTAGTAC 58.793 50.000 0.00 0.00 0.00 2.73
703 863 3.118223 GCTTTCCAATGCCTCCTAGTACT 60.118 47.826 0.00 0.00 0.00 2.73
704 864 4.626529 GCTTTCCAATGCCTCCTAGTACTT 60.627 45.833 0.00 0.00 0.00 2.24
705 865 5.501156 CTTTCCAATGCCTCCTAGTACTTT 58.499 41.667 0.00 0.00 0.00 2.66
706 866 5.514500 TTCCAATGCCTCCTAGTACTTTT 57.486 39.130 0.00 0.00 0.00 2.27
707 867 5.099042 TCCAATGCCTCCTAGTACTTTTC 57.901 43.478 0.00 0.00 0.00 2.29
735 895 5.711036 ACAATGTATAAAGCCCGTAAAACCA 59.289 36.000 0.00 0.00 0.00 3.67
781 945 2.177394 GCTGGCTAGCTTATCCTTCC 57.823 55.000 15.78 0.00 46.57 3.46
784 948 3.737850 CTGGCTAGCTTATCCTTCCTTG 58.262 50.000 15.72 0.00 0.00 3.61
785 949 3.384168 TGGCTAGCTTATCCTTCCTTGA 58.616 45.455 15.72 0.00 0.00 3.02
908 1730 2.357637 CCGTCCTTGTTCTTGCTTCAAA 59.642 45.455 0.00 0.00 0.00 2.69
955 1985 2.105477 CTGAGAGAGGGAGAGAGAGAGG 59.895 59.091 0.00 0.00 0.00 3.69
990 2020 7.600960 AGAGAAGAGAAATCCAAAGAAATTGC 58.399 34.615 0.00 0.00 37.73 3.56
991 2021 6.695429 AGAAGAGAAATCCAAAGAAATTGCC 58.305 36.000 0.00 0.00 37.73 4.52
992 2022 6.268387 AGAAGAGAAATCCAAAGAAATTGCCA 59.732 34.615 0.00 0.00 37.73 4.92
993 2023 6.616237 AGAGAAATCCAAAGAAATTGCCAT 57.384 33.333 0.00 0.00 37.73 4.40
1088 2118 2.167398 GACAGCACGGCCCAAGAGTA 62.167 60.000 0.00 0.00 0.00 2.59
1094 2124 2.101917 GCACGGCCCAAGAGTATACTAA 59.898 50.000 5.09 0.00 0.00 2.24
1103 2133 6.692486 CCCAAGAGTATACTAATACAGGCAG 58.308 44.000 5.09 0.00 40.49 4.85
1200 2242 0.107017 CCGGCCATGTCTTCTTCCAT 60.107 55.000 2.24 0.00 0.00 3.41
1291 2333 4.156556 CACCCATAAACATCACACAGAAGG 59.843 45.833 0.00 0.00 0.00 3.46
1377 2425 1.543429 CCTCACCCTCACTTGTTCACC 60.543 57.143 0.00 0.00 0.00 4.02
1385 2433 2.217750 TCACTTGTTCACCGACAATGG 58.782 47.619 0.00 0.00 38.71 3.16
1431 2485 0.739813 AGTTTACCATCGCCGTGCTC 60.740 55.000 0.00 0.00 0.00 4.26
1456 2510 9.396022 TCTCTCAAACCTCATATTACAATTTCC 57.604 33.333 0.00 0.00 0.00 3.13
1476 2530 4.357325 TCCTGCTCTACCTCTTCAAATCT 58.643 43.478 0.00 0.00 0.00 2.40
1677 2734 2.645510 CGTGCTCCGTGACGACAAC 61.646 63.158 6.54 0.00 37.81 3.32
1678 2735 2.354188 TGCTCCGTGACGACAACG 60.354 61.111 6.54 0.00 45.75 4.10
1679 2736 2.050714 GCTCCGTGACGACAACGA 60.051 61.111 6.54 0.00 42.66 3.85
1818 2890 3.385111 AGTTTGTCGAGTTGGAAGTCTCT 59.615 43.478 0.00 0.00 0.00 3.10
2021 3114 1.348594 GCGGAATGCTGCGTAAGAC 59.651 57.895 0.00 0.00 41.73 3.01
2091 3187 1.948145 CTCAGCCTGAATGATCAAGGC 59.052 52.381 23.86 23.86 43.97 4.35
2093 3189 2.097036 CAGCCTGAATGATCAAGGCAA 58.903 47.619 29.79 3.79 45.04 4.52
2158 3254 0.877071 ATGGCTTCTTGCTGTTGACG 59.123 50.000 0.00 0.00 42.39 4.35
2351 3871 1.826385 AAGCTGCAACCGCTAAGATT 58.174 45.000 1.02 0.00 36.56 2.40
2357 3877 4.298332 CTGCAACCGCTAAGATTTTTGTT 58.702 39.130 0.00 0.00 39.64 2.83
2387 3907 9.806203 TTTGCCAAATCATAATATTGTTCTCTG 57.194 29.630 0.00 0.00 0.00 3.35
2413 3933 5.765182 ACTTGCAATTGTTAACTACTGAGCT 59.235 36.000 7.40 0.00 0.00 4.09
2525 4079 1.742750 GCCGGTCATGTCCTAAGTTCC 60.743 57.143 1.90 0.00 0.00 3.62
2549 4103 3.372206 CCTCGCTTGAAGATTGTTGTAGG 59.628 47.826 0.00 0.00 0.00 3.18
2551 4105 3.007506 TCGCTTGAAGATTGTTGTAGGGA 59.992 43.478 0.00 0.00 0.00 4.20
2632 4329 8.421784 ACTGAACTTCACTCTCAATTACAAGTA 58.578 33.333 0.00 0.00 0.00 2.24
3174 6362 0.883833 CACACTGATGCTTGGGGAAC 59.116 55.000 0.00 0.00 0.00 3.62
3225 6413 2.614481 GGGAAATGAACTGCGTCTACCA 60.614 50.000 0.00 0.00 0.00 3.25
3307 6495 1.883084 CTCGCTCGTATGGGGTTGC 60.883 63.158 0.00 0.00 0.00 4.17
3380 6568 6.152661 CCTGTACTCCTAATTTGAATTTGGCA 59.847 38.462 10.74 0.00 39.91 4.92
3468 6656 9.719355 ATATTTGATGAATACATTGCATTGCAT 57.281 25.926 12.95 0.00 34.08 3.96
3469 6657 7.851387 TTTGATGAATACATTGCATTGCATT 57.149 28.000 12.95 6.17 38.76 3.56
3470 6658 6.836577 TGATGAATACATTGCATTGCATTG 57.163 33.333 24.58 24.58 43.00 2.82
3471 6659 5.235401 TGATGAATACATTGCATTGCATTGC 59.765 36.000 25.60 23.33 41.68 3.56
3505 6693 2.098607 TGTTACTAGGAAGGATCGCGTG 59.901 50.000 5.77 0.00 0.00 5.34
3551 6739 2.829741 TTGCCCAACATAAGCAAACC 57.170 45.000 0.00 0.00 43.14 3.27
3552 6740 1.709578 TGCCCAACATAAGCAAACCA 58.290 45.000 0.00 0.00 32.56 3.67
3553 6741 1.342819 TGCCCAACATAAGCAAACCAC 59.657 47.619 0.00 0.00 32.56 4.16
3602 6790 7.628501 TCCCCTAATATTTCTCTACTTTCCC 57.371 40.000 0.00 0.00 0.00 3.97
3603 6791 7.143741 TCCCCTAATATTTCTCTACTTTCCCA 58.856 38.462 0.00 0.00 0.00 4.37
3604 6792 7.292591 TCCCCTAATATTTCTCTACTTTCCCAG 59.707 40.741 0.00 0.00 0.00 4.45
3605 6793 7.454225 CCCTAATATTTCTCTACTTTCCCAGG 58.546 42.308 0.00 0.00 0.00 4.45
3623 6811 2.900106 GCCCAGGCCACAGTCTTCT 61.900 63.158 5.01 0.00 34.56 2.85
3626 6814 0.689623 CCAGGCCACAGTCTTCTTCT 59.310 55.000 5.01 0.00 0.00 2.85
3644 6832 0.462581 CTTAGCGAGATTGGCCTGCA 60.463 55.000 3.32 0.00 0.00 4.41
3645 6833 0.462581 TTAGCGAGATTGGCCTGCAG 60.463 55.000 6.78 6.78 0.00 4.41
3646 6834 1.329913 TAGCGAGATTGGCCTGCAGA 61.330 55.000 17.39 0.00 0.00 4.26
3647 6835 1.746615 GCGAGATTGGCCTGCAGAA 60.747 57.895 17.39 1.24 0.00 3.02
3648 6836 1.712977 GCGAGATTGGCCTGCAGAAG 61.713 60.000 17.39 0.00 0.00 2.85
3649 6837 0.107993 CGAGATTGGCCTGCAGAAGA 60.108 55.000 17.39 0.00 0.00 2.87
3650 6838 1.676916 CGAGATTGGCCTGCAGAAGAA 60.677 52.381 17.39 4.43 0.00 2.52
3651 6839 2.015587 GAGATTGGCCTGCAGAAGAAG 58.984 52.381 17.39 0.00 0.00 2.85
3652 6840 0.455005 GATTGGCCTGCAGAAGAAGC 59.545 55.000 17.39 9.51 0.00 3.86
3653 6841 0.039326 ATTGGCCTGCAGAAGAAGCT 59.961 50.000 17.39 0.00 0.00 3.74
3654 6842 0.178981 TTGGCCTGCAGAAGAAGCTT 60.179 50.000 17.39 0.00 0.00 3.74
3655 6843 0.178981 TGGCCTGCAGAAGAAGCTTT 60.179 50.000 17.39 0.00 0.00 3.51
3656 6844 0.525311 GGCCTGCAGAAGAAGCTTTC 59.475 55.000 17.39 0.00 0.00 2.62
3657 6845 0.525311 GCCTGCAGAAGAAGCTTTCC 59.475 55.000 17.39 0.00 0.00 3.13
3658 6846 1.172175 CCTGCAGAAGAAGCTTTCCC 58.828 55.000 17.39 0.00 0.00 3.97
3659 6847 1.172175 CTGCAGAAGAAGCTTTCCCC 58.828 55.000 8.42 0.00 0.00 4.81
3660 6848 0.773644 TGCAGAAGAAGCTTTCCCCT 59.226 50.000 0.00 0.00 0.00 4.79
3661 6849 1.271597 TGCAGAAGAAGCTTTCCCCTC 60.272 52.381 0.00 0.00 0.00 4.30
3662 6850 1.004161 GCAGAAGAAGCTTTCCCCTCT 59.996 52.381 0.00 0.00 0.00 3.69
3663 6851 2.939198 GCAGAAGAAGCTTTCCCCTCTC 60.939 54.545 0.00 0.00 0.00 3.20
3664 6852 1.912731 AGAAGAAGCTTTCCCCTCTCC 59.087 52.381 0.00 0.00 0.00 3.71
3665 6853 0.995803 AAGAAGCTTTCCCCTCTCCC 59.004 55.000 0.00 0.00 0.00 4.30
3666 6854 1.222113 GAAGCTTTCCCCTCTCCCG 59.778 63.158 0.00 0.00 0.00 5.14
3667 6855 1.539124 AAGCTTTCCCCTCTCCCGT 60.539 57.895 0.00 0.00 0.00 5.28
3668 6856 1.554583 AAGCTTTCCCCTCTCCCGTC 61.555 60.000 0.00 0.00 0.00 4.79
3669 6857 1.990614 GCTTTCCCCTCTCCCGTCT 60.991 63.158 0.00 0.00 0.00 4.18
3670 6858 1.962321 GCTTTCCCCTCTCCCGTCTC 61.962 65.000 0.00 0.00 0.00 3.36
3671 6859 0.614979 CTTTCCCCTCTCCCGTCTCA 60.615 60.000 0.00 0.00 0.00 3.27
3672 6860 0.042731 TTTCCCCTCTCCCGTCTCAT 59.957 55.000 0.00 0.00 0.00 2.90
3673 6861 0.042731 TTCCCCTCTCCCGTCTCATT 59.957 55.000 0.00 0.00 0.00 2.57
3674 6862 0.397254 TCCCCTCTCCCGTCTCATTC 60.397 60.000 0.00 0.00 0.00 2.67
3675 6863 0.397816 CCCCTCTCCCGTCTCATTCT 60.398 60.000 0.00 0.00 0.00 2.40
3676 6864 0.749649 CCCTCTCCCGTCTCATTCTG 59.250 60.000 0.00 0.00 0.00 3.02
3677 6865 1.479709 CCTCTCCCGTCTCATTCTGT 58.520 55.000 0.00 0.00 0.00 3.41
3678 6866 1.135915 CCTCTCCCGTCTCATTCTGTG 59.864 57.143 0.00 0.00 0.00 3.66
3679 6867 1.135915 CTCTCCCGTCTCATTCTGTGG 59.864 57.143 0.00 0.00 0.00 4.17
3680 6868 1.186200 CTCCCGTCTCATTCTGTGGA 58.814 55.000 0.00 0.00 0.00 4.02
3681 6869 0.895530 TCCCGTCTCATTCTGTGGAC 59.104 55.000 0.00 0.00 0.00 4.02
3682 6870 0.898320 CCCGTCTCATTCTGTGGACT 59.102 55.000 0.00 0.00 0.00 3.85
3683 6871 1.276421 CCCGTCTCATTCTGTGGACTT 59.724 52.381 0.00 0.00 0.00 3.01
3684 6872 2.341257 CCGTCTCATTCTGTGGACTTG 58.659 52.381 0.00 0.00 0.00 3.16
3685 6873 2.341257 CGTCTCATTCTGTGGACTTGG 58.659 52.381 0.00 0.00 0.00 3.61
3686 6874 2.289072 CGTCTCATTCTGTGGACTTGGT 60.289 50.000 0.00 0.00 0.00 3.67
3687 6875 3.744660 GTCTCATTCTGTGGACTTGGTT 58.255 45.455 0.00 0.00 0.00 3.67
3688 6876 3.499918 GTCTCATTCTGTGGACTTGGTTG 59.500 47.826 0.00 0.00 0.00 3.77
3689 6877 3.136443 TCTCATTCTGTGGACTTGGTTGT 59.864 43.478 0.00 0.00 0.00 3.32
3690 6878 4.346709 TCTCATTCTGTGGACTTGGTTGTA 59.653 41.667 0.00 0.00 0.00 2.41
3691 6879 5.013079 TCTCATTCTGTGGACTTGGTTGTAT 59.987 40.000 0.00 0.00 0.00 2.29
3692 6880 5.630121 TCATTCTGTGGACTTGGTTGTATT 58.370 37.500 0.00 0.00 0.00 1.89
3693 6881 6.068010 TCATTCTGTGGACTTGGTTGTATTT 58.932 36.000 0.00 0.00 0.00 1.40
3694 6882 5.766150 TTCTGTGGACTTGGTTGTATTTG 57.234 39.130 0.00 0.00 0.00 2.32
3695 6883 4.787551 TCTGTGGACTTGGTTGTATTTGT 58.212 39.130 0.00 0.00 0.00 2.83
3696 6884 5.931294 TCTGTGGACTTGGTTGTATTTGTA 58.069 37.500 0.00 0.00 0.00 2.41
3697 6885 6.539173 TCTGTGGACTTGGTTGTATTTGTAT 58.461 36.000 0.00 0.00 0.00 2.29
3698 6886 7.001674 TCTGTGGACTTGGTTGTATTTGTATT 58.998 34.615 0.00 0.00 0.00 1.89
3699 6887 7.504238 TCTGTGGACTTGGTTGTATTTGTATTT 59.496 33.333 0.00 0.00 0.00 1.40
3700 6888 7.653647 TGTGGACTTGGTTGTATTTGTATTTC 58.346 34.615 0.00 0.00 0.00 2.17
3701 6889 7.088272 GTGGACTTGGTTGTATTTGTATTTCC 58.912 38.462 0.00 0.00 0.00 3.13
3702 6890 6.072397 TGGACTTGGTTGTATTTGTATTTCCG 60.072 38.462 0.00 0.00 0.00 4.30
3703 6891 6.072342 GGACTTGGTTGTATTTGTATTTCCGT 60.072 38.462 0.00 0.00 0.00 4.69
3704 6892 7.279750 ACTTGGTTGTATTTGTATTTCCGTT 57.720 32.000 0.00 0.00 0.00 4.44
3705 6893 8.393671 ACTTGGTTGTATTTGTATTTCCGTTA 57.606 30.769 0.00 0.00 0.00 3.18
3706 6894 9.016438 ACTTGGTTGTATTTGTATTTCCGTTAT 57.984 29.630 0.00 0.00 0.00 1.89
3707 6895 9.284594 CTTGGTTGTATTTGTATTTCCGTTATG 57.715 33.333 0.00 0.00 0.00 1.90
3708 6896 8.338072 TGGTTGTATTTGTATTTCCGTTATGT 57.662 30.769 0.00 0.00 0.00 2.29
3709 6897 8.452534 TGGTTGTATTTGTATTTCCGTTATGTC 58.547 33.333 0.00 0.00 0.00 3.06
3710 6898 7.637132 GGTTGTATTTGTATTTCCGTTATGTCG 59.363 37.037 0.00 0.00 0.00 4.35
3711 6899 6.707711 TGTATTTGTATTTCCGTTATGTCGC 58.292 36.000 0.00 0.00 0.00 5.19
3712 6900 5.804692 ATTTGTATTTCCGTTATGTCGCA 57.195 34.783 0.00 0.00 0.00 5.10
3713 6901 4.850859 TTGTATTTCCGTTATGTCGCAG 57.149 40.909 0.00 0.00 0.00 5.18
3714 6902 3.852286 TGTATTTCCGTTATGTCGCAGT 58.148 40.909 0.00 0.00 0.00 4.40
3715 6903 4.996344 TGTATTTCCGTTATGTCGCAGTA 58.004 39.130 0.00 0.00 0.00 2.74
3716 6904 5.409211 TGTATTTCCGTTATGTCGCAGTAA 58.591 37.500 0.00 0.00 0.00 2.24
3717 6905 6.044046 TGTATTTCCGTTATGTCGCAGTAAT 58.956 36.000 0.00 0.00 0.00 1.89
3718 6906 4.850859 TTTCCGTTATGTCGCAGTAATG 57.149 40.909 0.00 0.00 0.00 1.90
3719 6907 2.816689 TCCGTTATGTCGCAGTAATGG 58.183 47.619 0.00 0.00 38.00 3.16
3720 6908 2.427812 TCCGTTATGTCGCAGTAATGGA 59.572 45.455 9.15 9.15 41.40 3.41
3721 6909 3.119065 TCCGTTATGTCGCAGTAATGGAA 60.119 43.478 10.23 0.00 40.96 3.53
3722 6910 3.619483 CCGTTATGTCGCAGTAATGGAAA 59.381 43.478 0.00 0.00 38.63 3.13
3723 6911 4.260212 CCGTTATGTCGCAGTAATGGAAAG 60.260 45.833 0.00 0.00 38.63 2.62
3724 6912 4.260212 CGTTATGTCGCAGTAATGGAAAGG 60.260 45.833 0.00 0.00 0.00 3.11
3725 6913 2.107950 TGTCGCAGTAATGGAAAGGG 57.892 50.000 0.00 0.00 0.00 3.95
3726 6914 1.339631 TGTCGCAGTAATGGAAAGGGG 60.340 52.381 0.00 0.00 0.00 4.79
3727 6915 0.988832 TCGCAGTAATGGAAAGGGGT 59.011 50.000 0.00 0.00 0.00 4.95
3728 6916 1.353022 TCGCAGTAATGGAAAGGGGTT 59.647 47.619 0.00 0.00 0.00 4.11
3729 6917 2.572556 TCGCAGTAATGGAAAGGGGTTA 59.427 45.455 0.00 0.00 0.00 2.85
3730 6918 3.201266 TCGCAGTAATGGAAAGGGGTTAT 59.799 43.478 0.00 0.00 0.00 1.89
3731 6919 3.315191 CGCAGTAATGGAAAGGGGTTATG 59.685 47.826 0.00 0.00 0.00 1.90
3732 6920 3.068165 GCAGTAATGGAAAGGGGTTATGC 59.932 47.826 0.00 0.00 0.00 3.14
3733 6921 3.636764 CAGTAATGGAAAGGGGTTATGCC 59.363 47.826 0.00 0.00 0.00 4.40
3832 7025 2.467566 ATACCTTCCGTTTGCTCGTT 57.532 45.000 0.00 0.00 0.00 3.85
3849 7042 4.686554 GCTCGTTGTTCTAAACTGATGTCT 59.313 41.667 0.00 0.00 0.00 3.41
3878 7071 1.993370 GGCAGTGTGTAAAGCTAGTCG 59.007 52.381 0.00 0.00 0.00 4.18
3879 7072 2.609737 GGCAGTGTGTAAAGCTAGTCGT 60.610 50.000 0.00 0.00 0.00 4.34
3880 7073 2.408704 GCAGTGTGTAAAGCTAGTCGTG 59.591 50.000 0.00 0.00 0.00 4.35
3881 7074 2.408704 CAGTGTGTAAAGCTAGTCGTGC 59.591 50.000 0.00 0.00 0.00 5.34
3882 7075 2.035449 AGTGTGTAAAGCTAGTCGTGCA 59.965 45.455 0.00 0.00 0.00 4.57
3883 7076 2.993899 GTGTGTAAAGCTAGTCGTGCAT 59.006 45.455 0.00 0.00 0.00 3.96
3884 7077 4.082408 AGTGTGTAAAGCTAGTCGTGCATA 60.082 41.667 0.00 0.00 0.00 3.14
3885 7078 4.804139 GTGTGTAAAGCTAGTCGTGCATAT 59.196 41.667 0.00 0.00 0.00 1.78
3886 7079 5.041287 TGTGTAAAGCTAGTCGTGCATATC 58.959 41.667 0.00 0.00 0.00 1.63
3887 7080 4.444720 GTGTAAAGCTAGTCGTGCATATCC 59.555 45.833 0.00 0.00 0.00 2.59
3888 7081 3.819564 AAAGCTAGTCGTGCATATCCA 57.180 42.857 0.00 0.00 0.00 3.41
3923 7120 9.994432 CAGAGGTCATTTACAAAATGAATAGAC 57.006 33.333 14.76 5.09 38.27 2.59
3961 7158 2.376808 ACAGATTCGTTGAGCTCCAG 57.623 50.000 12.15 2.38 0.00 3.86
3981 7178 1.229400 ACGGGAAGGAAGGTAGCCA 60.229 57.895 0.00 0.00 0.00 4.75
3982 7179 1.265454 ACGGGAAGGAAGGTAGCCAG 61.265 60.000 0.00 0.00 0.00 4.85
3983 7180 0.976073 CGGGAAGGAAGGTAGCCAGA 60.976 60.000 0.00 0.00 0.00 3.86
3984 7181 0.833949 GGGAAGGAAGGTAGCCAGAG 59.166 60.000 0.00 0.00 0.00 3.35
3985 7182 0.833949 GGAAGGAAGGTAGCCAGAGG 59.166 60.000 0.00 0.00 0.00 3.69
3986 7183 0.833949 GAAGGAAGGTAGCCAGAGGG 59.166 60.000 0.00 0.00 37.18 4.30
3993 7190 1.621377 GTAGCCAGAGGGAGAGGGA 59.379 63.158 0.00 0.00 35.59 4.20
4023 7220 1.075151 GGTAGTGAGGAGGGGAGGG 60.075 68.421 0.00 0.00 0.00 4.30
4024 7221 1.075151 GTAGTGAGGAGGGGAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
4025 7222 1.230853 TAGTGAGGAGGGGAGGGGA 60.231 63.158 0.00 0.00 0.00 4.81
4030 7227 2.018086 AGGAGGGGAGGGGAGAGAG 61.018 68.421 0.00 0.00 0.00 3.20
4038 7279 1.331214 GAGGGGAGAGAGCAGATGAG 58.669 60.000 0.00 0.00 0.00 2.90
4051 7292 2.158928 GCAGATGAGAAGATGTGGCTCT 60.159 50.000 0.00 0.00 0.00 4.09
4065 7306 1.024271 GGCTCTGTGTGTTTTGCTGA 58.976 50.000 0.00 0.00 0.00 4.26
4066 7307 1.610522 GGCTCTGTGTGTTTTGCTGAT 59.389 47.619 0.00 0.00 0.00 2.90
4103 7344 2.129607 CTACACCTACACGCGTGTTTT 58.870 47.619 45.14 28.01 41.83 2.43
4131 7377 4.093952 GCTGATTGCACGTGCGCT 62.094 61.111 33.22 23.55 45.83 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 220 6.702282 CCGGTTAAATTCCAGCAAAGTTAAAA 59.298 34.615 0.00 0.00 32.45 1.52
61 221 6.040616 TCCGGTTAAATTCCAGCAAAGTTAAA 59.959 34.615 0.00 0.00 32.45 1.52
62 222 5.535406 TCCGGTTAAATTCCAGCAAAGTTAA 59.465 36.000 0.00 0.00 0.00 2.01
63 223 5.071370 TCCGGTTAAATTCCAGCAAAGTTA 58.929 37.500 0.00 0.00 0.00 2.24
490 650 9.241919 TGATCAATAAAGTGCTTTCATTCCTAA 57.758 29.630 0.00 0.00 34.23 2.69
491 651 8.806429 TGATCAATAAAGTGCTTTCATTCCTA 57.194 30.769 0.00 0.00 34.23 2.94
492 652 7.707624 TGATCAATAAAGTGCTTTCATTCCT 57.292 32.000 0.00 0.00 34.23 3.36
493 653 8.761575 TTTGATCAATAAAGTGCTTTCATTCC 57.238 30.769 9.40 0.00 34.23 3.01
496 656 9.374838 GGAATTTGATCAATAAAGTGCTTTCAT 57.625 29.630 9.40 0.00 34.23 2.57
497 657 8.366401 TGGAATTTGATCAATAAAGTGCTTTCA 58.634 29.630 9.40 0.00 34.23 2.69
498 658 8.650714 GTGGAATTTGATCAATAAAGTGCTTTC 58.349 33.333 9.40 2.53 34.23 2.62
499 659 8.149647 TGTGGAATTTGATCAATAAAGTGCTTT 58.850 29.630 9.40 2.60 36.63 3.51
500 660 7.669427 TGTGGAATTTGATCAATAAAGTGCTT 58.331 30.769 9.40 0.00 0.00 3.91
501 661 7.177216 TCTGTGGAATTTGATCAATAAAGTGCT 59.823 33.333 9.40 0.00 0.00 4.40
502 662 7.315142 TCTGTGGAATTTGATCAATAAAGTGC 58.685 34.615 9.40 0.00 0.00 4.40
503 663 9.350357 CTTCTGTGGAATTTGATCAATAAAGTG 57.650 33.333 9.40 0.00 0.00 3.16
504 664 8.526147 CCTTCTGTGGAATTTGATCAATAAAGT 58.474 33.333 9.40 0.00 0.00 2.66
505 665 8.526147 ACCTTCTGTGGAATTTGATCAATAAAG 58.474 33.333 9.40 1.38 0.00 1.85
506 666 8.306038 CACCTTCTGTGGAATTTGATCAATAAA 58.694 33.333 9.40 0.00 41.52 1.40
507 667 7.829725 CACCTTCTGTGGAATTTGATCAATAA 58.170 34.615 9.40 0.00 41.52 1.40
508 668 7.395190 CACCTTCTGTGGAATTTGATCAATA 57.605 36.000 9.40 0.91 41.52 1.90
509 669 6.276832 CACCTTCTGTGGAATTTGATCAAT 57.723 37.500 9.40 0.00 41.52 2.57
510 670 5.710513 CACCTTCTGTGGAATTTGATCAA 57.289 39.130 3.38 3.38 41.52 2.57
522 682 3.753272 CAGTTTGTATCCCACCTTCTGTG 59.247 47.826 0.00 0.00 45.01 3.66
523 683 3.244911 CCAGTTTGTATCCCACCTTCTGT 60.245 47.826 0.00 0.00 0.00 3.41
524 684 3.009033 TCCAGTTTGTATCCCACCTTCTG 59.991 47.826 0.00 0.00 0.00 3.02
525 685 3.256704 TCCAGTTTGTATCCCACCTTCT 58.743 45.455 0.00 0.00 0.00 2.85
526 686 3.713826 TCCAGTTTGTATCCCACCTTC 57.286 47.619 0.00 0.00 0.00 3.46
527 687 3.591527 TGATCCAGTTTGTATCCCACCTT 59.408 43.478 0.00 0.00 0.00 3.50
528 688 3.189606 TGATCCAGTTTGTATCCCACCT 58.810 45.455 0.00 0.00 0.00 4.00
529 689 3.644966 TGATCCAGTTTGTATCCCACC 57.355 47.619 0.00 0.00 0.00 4.61
530 690 4.336433 CACATGATCCAGTTTGTATCCCAC 59.664 45.833 0.00 0.00 0.00 4.61
531 691 4.525996 CACATGATCCAGTTTGTATCCCA 58.474 43.478 0.00 0.00 0.00 4.37
532 692 3.885297 CCACATGATCCAGTTTGTATCCC 59.115 47.826 0.00 0.00 0.00 3.85
533 693 3.316308 GCCACATGATCCAGTTTGTATCC 59.684 47.826 0.00 0.00 0.00 2.59
534 694 4.036027 CAGCCACATGATCCAGTTTGTATC 59.964 45.833 0.00 0.00 0.00 2.24
535 695 3.949754 CAGCCACATGATCCAGTTTGTAT 59.050 43.478 0.00 0.00 0.00 2.29
536 696 3.346315 CAGCCACATGATCCAGTTTGTA 58.654 45.455 0.00 0.00 0.00 2.41
537 697 2.165167 CAGCCACATGATCCAGTTTGT 58.835 47.619 0.00 0.00 0.00 2.83
538 698 1.475280 CCAGCCACATGATCCAGTTTG 59.525 52.381 0.00 0.00 0.00 2.93
539 699 1.843368 CCAGCCACATGATCCAGTTT 58.157 50.000 0.00 0.00 0.00 2.66
540 700 0.682209 GCCAGCCACATGATCCAGTT 60.682 55.000 0.00 0.00 0.00 3.16
541 701 1.077212 GCCAGCCACATGATCCAGT 60.077 57.895 0.00 0.00 0.00 4.00
542 702 1.826921 GGCCAGCCACATGATCCAG 60.827 63.158 3.12 0.00 35.81 3.86
543 703 2.276409 GGCCAGCCACATGATCCA 59.724 61.111 3.12 0.00 35.81 3.41
544 704 2.276409 TGGCCAGCCACATGATCC 59.724 61.111 7.43 0.00 41.89 3.36
552 712 0.469705 ATGTTTGTCTTGGCCAGCCA 60.470 50.000 7.43 7.43 45.63 4.75
553 713 0.037975 CATGTTTGTCTTGGCCAGCC 60.038 55.000 5.11 0.38 0.00 4.85
554 714 0.961019 TCATGTTTGTCTTGGCCAGC 59.039 50.000 5.11 0.78 0.00 4.85
555 715 1.069022 CGTCATGTTTGTCTTGGCCAG 60.069 52.381 5.11 0.00 0.00 4.85
556 716 0.950836 CGTCATGTTTGTCTTGGCCA 59.049 50.000 0.00 0.00 0.00 5.36
557 717 0.387239 GCGTCATGTTTGTCTTGGCC 60.387 55.000 0.00 0.00 0.00 5.36
558 718 0.387239 GGCGTCATGTTTGTCTTGGC 60.387 55.000 0.00 0.00 0.00 4.52
559 719 0.240945 GGGCGTCATGTTTGTCTTGG 59.759 55.000 0.00 0.00 0.00 3.61
560 720 0.240945 GGGGCGTCATGTTTGTCTTG 59.759 55.000 0.00 0.00 0.00 3.02
561 721 1.234615 CGGGGCGTCATGTTTGTCTT 61.235 55.000 0.00 0.00 0.00 3.01
562 722 1.671054 CGGGGCGTCATGTTTGTCT 60.671 57.895 0.00 0.00 0.00 3.41
563 723 2.686816 CCGGGGCGTCATGTTTGTC 61.687 63.158 0.00 0.00 0.00 3.18
564 724 2.671619 CCGGGGCGTCATGTTTGT 60.672 61.111 0.00 0.00 0.00 2.83
565 725 2.359354 TCCGGGGCGTCATGTTTG 60.359 61.111 0.00 0.00 0.00 2.93
566 726 2.046314 CTCCGGGGCGTCATGTTT 60.046 61.111 0.00 0.00 0.00 2.83
567 727 1.546589 TAACTCCGGGGCGTCATGTT 61.547 55.000 0.00 0.00 0.00 2.71
568 728 1.956629 CTAACTCCGGGGCGTCATGT 61.957 60.000 0.00 0.00 0.00 3.21
569 729 1.227263 CTAACTCCGGGGCGTCATG 60.227 63.158 0.00 0.00 0.00 3.07
570 730 2.432300 CCTAACTCCGGGGCGTCAT 61.432 63.158 0.00 0.00 0.00 3.06
571 731 3.072468 CCTAACTCCGGGGCGTCA 61.072 66.667 0.00 0.00 0.00 4.35
572 732 2.176314 AAACCTAACTCCGGGGCGTC 62.176 60.000 0.00 0.00 0.00 5.19
573 733 2.176314 GAAACCTAACTCCGGGGCGT 62.176 60.000 0.00 0.00 0.00 5.68
574 734 1.449070 GAAACCTAACTCCGGGGCG 60.449 63.158 0.00 0.00 0.00 6.13
575 735 1.138464 CTAGAAACCTAACTCCGGGGC 59.862 57.143 0.00 0.00 0.00 5.80
576 736 1.138464 GCTAGAAACCTAACTCCGGGG 59.862 57.143 0.00 0.00 0.00 5.73
577 737 1.829222 TGCTAGAAACCTAACTCCGGG 59.171 52.381 0.00 0.00 0.00 5.73
578 738 3.604875 TTGCTAGAAACCTAACTCCGG 57.395 47.619 0.00 0.00 0.00 5.14
579 739 6.496338 AAATTTGCTAGAAACCTAACTCCG 57.504 37.500 0.00 0.00 0.00 4.63
595 755 7.116913 GAAGCTCCTAGGTTAGCAAAATTTGC 61.117 42.308 21.86 21.86 45.62 3.68
596 756 5.904362 AGCTCCTAGGTTAGCAAAATTTG 57.096 39.130 21.22 0.57 41.32 2.32
597 757 5.123979 CGAAGCTCCTAGGTTAGCAAAATTT 59.876 40.000 21.22 8.85 41.32 1.82
598 758 4.636206 CGAAGCTCCTAGGTTAGCAAAATT 59.364 41.667 21.22 9.16 41.32 1.82
599 759 4.081087 TCGAAGCTCCTAGGTTAGCAAAAT 60.081 41.667 21.22 7.31 41.32 1.82
600 760 3.259876 TCGAAGCTCCTAGGTTAGCAAAA 59.740 43.478 21.22 4.57 41.32 2.44
601 761 2.829720 TCGAAGCTCCTAGGTTAGCAAA 59.170 45.455 21.22 4.27 41.32 3.68
602 762 2.165845 GTCGAAGCTCCTAGGTTAGCAA 59.834 50.000 21.22 4.57 41.32 3.91
603 763 1.749634 GTCGAAGCTCCTAGGTTAGCA 59.250 52.381 21.22 1.46 41.32 3.49
604 764 1.749634 TGTCGAAGCTCCTAGGTTAGC 59.250 52.381 13.43 13.43 35.86 3.09
605 765 4.657436 AATGTCGAAGCTCCTAGGTTAG 57.343 45.455 9.08 0.22 35.86 2.34
606 766 5.419788 TGTTAATGTCGAAGCTCCTAGGTTA 59.580 40.000 9.08 0.00 35.86 2.85
607 767 4.222145 TGTTAATGTCGAAGCTCCTAGGTT 59.778 41.667 9.08 0.00 38.85 3.50
608 768 3.767673 TGTTAATGTCGAAGCTCCTAGGT 59.232 43.478 9.08 0.00 0.00 3.08
609 769 4.142138 ACTGTTAATGTCGAAGCTCCTAGG 60.142 45.833 0.82 0.82 0.00 3.02
610 770 5.000012 ACTGTTAATGTCGAAGCTCCTAG 58.000 43.478 0.00 0.00 0.00 3.02
611 771 5.448225 CGTACTGTTAATGTCGAAGCTCCTA 60.448 44.000 0.00 0.00 0.00 2.94
612 772 3.963428 ACTGTTAATGTCGAAGCTCCT 57.037 42.857 0.00 0.00 0.00 3.69
613 773 3.546670 CGTACTGTTAATGTCGAAGCTCC 59.453 47.826 0.00 0.00 0.00 4.70
614 774 4.409570 TCGTACTGTTAATGTCGAAGCTC 58.590 43.478 0.00 0.00 0.00 4.09
615 775 4.430137 TCGTACTGTTAATGTCGAAGCT 57.570 40.909 0.00 0.00 0.00 3.74
616 776 4.561606 ACATCGTACTGTTAATGTCGAAGC 59.438 41.667 0.00 0.00 0.00 3.86
617 777 6.237490 GGAACATCGTACTGTTAATGTCGAAG 60.237 42.308 0.83 0.00 39.40 3.79
618 778 5.574055 GGAACATCGTACTGTTAATGTCGAA 59.426 40.000 0.83 0.00 39.40 3.71
619 779 5.097529 GGAACATCGTACTGTTAATGTCGA 58.902 41.667 0.83 0.00 39.40 4.20
620 780 5.100259 AGGAACATCGTACTGTTAATGTCG 58.900 41.667 0.83 0.00 39.40 4.35
621 781 5.519206 GGAGGAACATCGTACTGTTAATGTC 59.481 44.000 0.83 0.00 39.40 3.06
622 782 5.416947 GGAGGAACATCGTACTGTTAATGT 58.583 41.667 0.83 0.00 39.40 2.71
623 783 4.503007 CGGAGGAACATCGTACTGTTAATG 59.497 45.833 0.83 0.00 39.40 1.90
624 784 4.400251 TCGGAGGAACATCGTACTGTTAAT 59.600 41.667 0.83 0.00 39.40 1.40
625 785 3.758023 TCGGAGGAACATCGTACTGTTAA 59.242 43.478 0.83 0.00 39.40 2.01
626 786 3.127548 GTCGGAGGAACATCGTACTGTTA 59.872 47.826 0.83 0.00 39.40 2.41
627 787 2.094854 GTCGGAGGAACATCGTACTGTT 60.095 50.000 0.41 0.41 41.92 3.16
628 788 1.471684 GTCGGAGGAACATCGTACTGT 59.528 52.381 0.00 0.00 0.00 3.55
629 789 1.743958 AGTCGGAGGAACATCGTACTG 59.256 52.381 0.00 0.00 0.00 2.74
630 790 2.125773 AGTCGGAGGAACATCGTACT 57.874 50.000 0.00 0.00 0.00 2.73
631 791 2.094854 ACAAGTCGGAGGAACATCGTAC 60.095 50.000 0.00 0.00 0.00 3.67
632 792 2.165167 ACAAGTCGGAGGAACATCGTA 58.835 47.619 0.00 0.00 0.00 3.43
633 793 0.966920 ACAAGTCGGAGGAACATCGT 59.033 50.000 0.00 0.00 0.00 3.73
634 794 2.080286 AACAAGTCGGAGGAACATCG 57.920 50.000 0.00 0.00 0.00 3.84
635 795 3.564225 ACAAAACAAGTCGGAGGAACATC 59.436 43.478 0.00 0.00 0.00 3.06
636 796 3.315191 CACAAAACAAGTCGGAGGAACAT 59.685 43.478 0.00 0.00 0.00 2.71
637 797 2.680841 CACAAAACAAGTCGGAGGAACA 59.319 45.455 0.00 0.00 0.00 3.18
638 798 2.032924 CCACAAAACAAGTCGGAGGAAC 59.967 50.000 0.00 0.00 0.00 3.62
639 799 2.092861 TCCACAAAACAAGTCGGAGGAA 60.093 45.455 0.00 0.00 0.00 3.36
640 800 1.487142 TCCACAAAACAAGTCGGAGGA 59.513 47.619 0.00 0.00 0.00 3.71
641 801 1.961793 TCCACAAAACAAGTCGGAGG 58.038 50.000 0.00 0.00 0.00 4.30
642 802 2.226437 CCATCCACAAAACAAGTCGGAG 59.774 50.000 0.00 0.00 0.00 4.63
643 803 2.226330 CCATCCACAAAACAAGTCGGA 58.774 47.619 0.00 0.00 0.00 4.55
644 804 1.335872 GCCATCCACAAAACAAGTCGG 60.336 52.381 0.00 0.00 0.00 4.79
645 805 1.335872 GGCCATCCACAAAACAAGTCG 60.336 52.381 0.00 0.00 0.00 4.18
646 806 1.686052 TGGCCATCCACAAAACAAGTC 59.314 47.619 0.00 0.00 37.47 3.01
647 807 1.688197 CTGGCCATCCACAAAACAAGT 59.312 47.619 5.51 0.00 37.47 3.16
648 808 1.962807 TCTGGCCATCCACAAAACAAG 59.037 47.619 5.51 0.00 37.47 3.16
649 809 2.079170 TCTGGCCATCCACAAAACAA 57.921 45.000 5.51 0.00 37.47 2.83
650 810 1.686052 GTTCTGGCCATCCACAAAACA 59.314 47.619 5.51 0.00 37.47 2.83
651 811 1.686052 TGTTCTGGCCATCCACAAAAC 59.314 47.619 5.51 3.38 37.47 2.43
701 861 8.241367 CGGGCTTTATACATTGTTAAGAAAAGT 58.759 33.333 0.00 0.00 0.00 2.66
702 862 8.241367 ACGGGCTTTATACATTGTTAAGAAAAG 58.759 33.333 0.00 0.62 0.00 2.27
703 863 8.113173 ACGGGCTTTATACATTGTTAAGAAAA 57.887 30.769 0.00 0.00 0.00 2.29
704 864 7.690952 ACGGGCTTTATACATTGTTAAGAAA 57.309 32.000 0.00 0.00 0.00 2.52
705 865 8.789825 TTACGGGCTTTATACATTGTTAAGAA 57.210 30.769 0.00 0.00 0.00 2.52
706 866 8.789825 TTTACGGGCTTTATACATTGTTAAGA 57.210 30.769 0.00 0.00 0.00 2.10
707 867 9.281075 GTTTTACGGGCTTTATACATTGTTAAG 57.719 33.333 0.00 0.00 0.00 1.85
720 880 3.199677 GCTTTTTGGTTTTACGGGCTTT 58.800 40.909 0.00 0.00 0.00 3.51
735 895 3.160269 CCTTCATCACCTCTGGCTTTTT 58.840 45.455 0.00 0.00 0.00 1.94
780 944 1.740025 GAGCCGACCAAAGAATCAAGG 59.260 52.381 0.00 0.00 0.00 3.61
781 945 2.704572 AGAGCCGACCAAAGAATCAAG 58.295 47.619 0.00 0.00 0.00 3.02
784 948 2.205911 GCTAGAGCCGACCAAAGAATC 58.794 52.381 0.00 0.00 34.31 2.52
785 949 1.555075 TGCTAGAGCCGACCAAAGAAT 59.445 47.619 0.00 0.00 41.18 2.40
943 1971 2.370189 CTCTCTCTCCCTCTCTCTCTCC 59.630 59.091 0.00 0.00 0.00 3.71
955 1985 5.532779 GGATTTCTCTTCTCTCTCTCTCTCC 59.467 48.000 0.00 0.00 0.00 3.71
1088 2118 5.770663 ACGATCTGACTGCCTGTATTAGTAT 59.229 40.000 0.00 0.00 0.00 2.12
1094 2124 1.410517 CCACGATCTGACTGCCTGTAT 59.589 52.381 0.00 0.00 0.00 2.29
1103 2133 3.871594 CCATAAGGAAACCACGATCTGAC 59.128 47.826 0.00 0.00 36.89 3.51
1200 2242 1.533625 CGCAAAGGATCTTGGGTTCA 58.466 50.000 4.21 0.00 35.22 3.18
1291 2333 3.377485 TGGTAGATGAAGTAGTCGCTCAC 59.623 47.826 0.00 0.00 0.00 3.51
1413 2467 0.739813 AGAGCACGGCGATGGTAAAC 60.740 55.000 16.62 2.56 0.00 2.01
1431 2485 9.401058 AGGAAATTGTAATATGAGGTTTGAGAG 57.599 33.333 0.00 0.00 0.00 3.20
1456 2510 5.336150 TCAGATTTGAAGAGGTAGAGCAG 57.664 43.478 0.00 0.00 0.00 4.24
1593 2647 1.528824 CCTGCTCCCGATGGTGATT 59.471 57.895 0.00 0.00 0.00 2.57
1674 2731 2.870832 CGTACTTTGTCGTTGTCGTTG 58.129 47.619 0.00 0.00 38.33 4.10
1675 2732 1.256117 GCGTACTTTGTCGTTGTCGTT 59.744 47.619 0.00 0.00 38.33 3.85
1677 2734 0.160182 GGCGTACTTTGTCGTTGTCG 59.840 55.000 0.00 0.00 38.55 4.35
1678 2735 1.494824 AGGCGTACTTTGTCGTTGTC 58.505 50.000 0.00 0.00 0.00 3.18
1679 2736 1.595794 CAAGGCGTACTTTGTCGTTGT 59.404 47.619 0.00 0.00 37.29 3.32
1745 2817 1.269723 GGTAAGGCTTTGGACAGCAAC 59.730 52.381 4.45 0.00 42.10 4.17
1818 2890 2.225382 TACCAGGAAGACGATCACCA 57.775 50.000 0.00 0.00 0.00 4.17
2021 3114 1.275856 AGTTTCTCTCTGCAGCCTCAG 59.724 52.381 9.47 0.59 35.46 3.35
2091 3187 5.335897 CCTGGTGATGAGGTAAACAACATTG 60.336 44.000 0.00 0.00 29.64 2.82
2093 3189 4.335416 CCTGGTGATGAGGTAAACAACAT 58.665 43.478 0.00 0.00 29.64 2.71
2158 3254 0.040425 CGTACTTGCTTGTTGGCCAC 60.040 55.000 3.88 0.75 0.00 5.01
2308 3820 4.908601 ACAAGTAATCACAGGACATGGA 57.091 40.909 0.00 0.00 0.00 3.41
2372 3892 8.757982 ATTGCAAGTCCAGAGAACAATATTAT 57.242 30.769 4.94 0.00 0.00 1.28
2373 3893 8.461222 CAATTGCAAGTCCAGAGAACAATATTA 58.539 33.333 4.94 0.00 0.00 0.98
2374 3894 7.039504 ACAATTGCAAGTCCAGAGAACAATATT 60.040 33.333 4.94 0.00 0.00 1.28
2376 3896 5.769662 ACAATTGCAAGTCCAGAGAACAATA 59.230 36.000 4.94 0.00 0.00 1.90
2377 3897 4.586001 ACAATTGCAAGTCCAGAGAACAAT 59.414 37.500 4.94 0.00 0.00 2.71
2378 3898 3.953612 ACAATTGCAAGTCCAGAGAACAA 59.046 39.130 4.94 0.00 0.00 2.83
2379 3899 3.554934 ACAATTGCAAGTCCAGAGAACA 58.445 40.909 4.94 0.00 0.00 3.18
2380 3900 4.574599 AACAATTGCAAGTCCAGAGAAC 57.425 40.909 4.94 0.00 0.00 3.01
2381 3901 5.827797 AGTTAACAATTGCAAGTCCAGAGAA 59.172 36.000 8.61 0.00 0.00 2.87
2382 3902 5.376625 AGTTAACAATTGCAAGTCCAGAGA 58.623 37.500 8.61 0.00 0.00 3.10
2383 3903 5.695851 AGTTAACAATTGCAAGTCCAGAG 57.304 39.130 8.61 0.00 0.00 3.35
2384 3904 6.204688 CAGTAGTTAACAATTGCAAGTCCAGA 59.795 38.462 8.61 0.00 0.00 3.86
2385 3905 6.204688 TCAGTAGTTAACAATTGCAAGTCCAG 59.795 38.462 8.61 0.00 0.00 3.86
2386 3906 6.058833 TCAGTAGTTAACAATTGCAAGTCCA 58.941 36.000 8.61 0.00 0.00 4.02
2387 3907 6.554334 TCAGTAGTTAACAATTGCAAGTCC 57.446 37.500 8.61 0.00 0.00 3.85
2413 3933 8.634335 TCTAAGGAAATTCATTGTCACATTGA 57.366 30.769 2.90 0.00 0.00 2.57
2525 4079 0.798776 AACAATCTTCAAGCGAGGCG 59.201 50.000 0.00 0.00 0.00 5.52
2549 4103 7.987458 TCTTGGAATAATGATACACTTGAGTCC 59.013 37.037 0.00 0.00 0.00 3.85
2551 4105 9.739276 TTTCTTGGAATAATGATACACTTGAGT 57.261 29.630 0.00 0.00 0.00 3.41
2632 4329 3.330701 ACTGGACAATTGTCATGTACCCT 59.669 43.478 33.42 11.16 46.47 4.34
2715 4414 4.455533 TCTCATTCCAATGGTTTGTTCTCG 59.544 41.667 0.00 0.00 37.03 4.04
3174 6362 1.199624 GCAGTTTGTTCCGCAGTTTG 58.800 50.000 0.00 0.00 0.00 2.93
3331 6519 9.420118 AGGAAAATAAGATATAACCACATGCAA 57.580 29.630 0.00 0.00 0.00 4.08
3380 6568 9.456147 TGTAAATAACACTGGTAATGCAATACT 57.544 29.630 11.59 0.00 31.43 2.12
3468 6656 4.141287 AGTAACAACTACTGGCAATGCAA 58.859 39.130 7.79 0.00 39.52 4.08
3469 6657 3.750371 AGTAACAACTACTGGCAATGCA 58.250 40.909 7.79 0.00 39.52 3.96
3470 6658 4.332819 CCTAGTAACAACTACTGGCAATGC 59.667 45.833 0.00 0.00 41.20 3.56
3471 6659 5.730550 TCCTAGTAACAACTACTGGCAATG 58.269 41.667 0.00 0.00 41.20 2.82
3472 6660 6.368779 TTCCTAGTAACAACTACTGGCAAT 57.631 37.500 0.00 0.00 41.20 3.56
3531 6719 2.224161 TGGTTTGCTTATGTTGGGCAAC 60.224 45.455 0.00 0.00 44.08 4.17
3532 6720 2.042464 TGGTTTGCTTATGTTGGGCAA 58.958 42.857 0.00 0.00 42.97 4.52
3533 6721 1.342819 GTGGTTTGCTTATGTTGGGCA 59.657 47.619 0.00 0.00 0.00 5.36
3534 6722 1.342819 TGTGGTTTGCTTATGTTGGGC 59.657 47.619 0.00 0.00 0.00 5.36
3535 6723 3.257873 TCATGTGGTTTGCTTATGTTGGG 59.742 43.478 0.00 0.00 0.00 4.12
3536 6724 4.517952 TCATGTGGTTTGCTTATGTTGG 57.482 40.909 0.00 0.00 0.00 3.77
3537 6725 6.479660 AGTTTTCATGTGGTTTGCTTATGTTG 59.520 34.615 0.00 0.00 0.00 3.33
3538 6726 6.479660 CAGTTTTCATGTGGTTTGCTTATGTT 59.520 34.615 0.00 0.00 0.00 2.71
3539 6727 5.984926 CAGTTTTCATGTGGTTTGCTTATGT 59.015 36.000 0.00 0.00 0.00 2.29
3540 6728 5.406175 CCAGTTTTCATGTGGTTTGCTTATG 59.594 40.000 0.00 0.00 0.00 1.90
3541 6729 5.070313 ACCAGTTTTCATGTGGTTTGCTTAT 59.930 36.000 0.00 0.00 42.10 1.73
3542 6730 4.404073 ACCAGTTTTCATGTGGTTTGCTTA 59.596 37.500 0.00 0.00 42.10 3.09
3543 6731 3.197549 ACCAGTTTTCATGTGGTTTGCTT 59.802 39.130 0.00 0.00 42.10 3.91
3544 6732 2.765699 ACCAGTTTTCATGTGGTTTGCT 59.234 40.909 0.00 0.00 42.10 3.91
3545 6733 2.865551 CACCAGTTTTCATGTGGTTTGC 59.134 45.455 2.30 0.00 42.10 3.68
3546 6734 2.865551 GCACCAGTTTTCATGTGGTTTG 59.134 45.455 2.30 0.00 42.10 2.93
3547 6735 2.158971 GGCACCAGTTTTCATGTGGTTT 60.159 45.455 2.30 0.00 42.10 3.27
3548 6736 1.412343 GGCACCAGTTTTCATGTGGTT 59.588 47.619 2.30 0.00 42.10 3.67
3549 6737 1.039856 GGCACCAGTTTTCATGTGGT 58.960 50.000 0.00 0.00 45.83 4.16
3550 6738 3.892200 GGCACCAGTTTTCATGTGG 57.108 52.632 0.00 0.00 37.38 4.17
3605 6793 2.360475 GAAGACTGTGGCCTGGGC 60.360 66.667 14.23 14.23 41.06 5.36
3623 6811 1.743772 GCAGGCCAATCTCGCTAAGAA 60.744 52.381 5.01 0.00 37.61 2.52
3626 6814 0.462581 CTGCAGGCCAATCTCGCTAA 60.463 55.000 5.01 0.00 0.00 3.09
3644 6832 1.912731 GGAGAGGGGAAAGCTTCTTCT 59.087 52.381 0.00 0.00 0.00 2.85
3645 6833 1.065053 GGGAGAGGGGAAAGCTTCTTC 60.065 57.143 0.00 0.00 0.00 2.87
3646 6834 0.995803 GGGAGAGGGGAAAGCTTCTT 59.004 55.000 0.00 0.00 0.00 2.52
3647 6835 1.268283 CGGGAGAGGGGAAAGCTTCT 61.268 60.000 0.00 0.00 0.00 2.85
3648 6836 1.222113 CGGGAGAGGGGAAAGCTTC 59.778 63.158 0.00 0.00 0.00 3.86
3649 6837 1.539124 ACGGGAGAGGGGAAAGCTT 60.539 57.895 0.00 0.00 0.00 3.74
3650 6838 1.990614 GACGGGAGAGGGGAAAGCT 60.991 63.158 0.00 0.00 0.00 3.74
3651 6839 1.962321 GAGACGGGAGAGGGGAAAGC 61.962 65.000 0.00 0.00 0.00 3.51
3652 6840 0.614979 TGAGACGGGAGAGGGGAAAG 60.615 60.000 0.00 0.00 0.00 2.62
3653 6841 0.042731 ATGAGACGGGAGAGGGGAAA 59.957 55.000 0.00 0.00 0.00 3.13
3654 6842 0.042731 AATGAGACGGGAGAGGGGAA 59.957 55.000 0.00 0.00 0.00 3.97
3655 6843 0.397254 GAATGAGACGGGAGAGGGGA 60.397 60.000 0.00 0.00 0.00 4.81
3656 6844 0.397816 AGAATGAGACGGGAGAGGGG 60.398 60.000 0.00 0.00 0.00 4.79
3657 6845 0.749649 CAGAATGAGACGGGAGAGGG 59.250 60.000 0.00 0.00 39.69 4.30
3658 6846 1.135915 CACAGAATGAGACGGGAGAGG 59.864 57.143 0.00 0.00 39.69 3.69
3659 6847 1.135915 CCACAGAATGAGACGGGAGAG 59.864 57.143 0.00 0.00 39.69 3.20
3660 6848 1.186200 CCACAGAATGAGACGGGAGA 58.814 55.000 0.00 0.00 39.69 3.71
3661 6849 1.134965 GTCCACAGAATGAGACGGGAG 60.135 57.143 0.00 0.00 39.69 4.30
3662 6850 0.895530 GTCCACAGAATGAGACGGGA 59.104 55.000 0.00 0.00 39.69 5.14
3663 6851 0.898320 AGTCCACAGAATGAGACGGG 59.102 55.000 0.00 0.00 43.93 5.28
3664 6852 2.341257 CAAGTCCACAGAATGAGACGG 58.659 52.381 0.00 0.00 43.93 4.79
3665 6853 2.289072 ACCAAGTCCACAGAATGAGACG 60.289 50.000 0.00 0.00 43.93 4.18
3666 6854 3.409026 ACCAAGTCCACAGAATGAGAC 57.591 47.619 0.00 0.00 39.69 3.36
3667 6855 3.136443 ACAACCAAGTCCACAGAATGAGA 59.864 43.478 0.00 0.00 39.69 3.27
3668 6856 3.480470 ACAACCAAGTCCACAGAATGAG 58.520 45.455 0.00 0.00 39.69 2.90
3669 6857 3.576078 ACAACCAAGTCCACAGAATGA 57.424 42.857 0.00 0.00 39.69 2.57
3670 6858 5.964958 AATACAACCAAGTCCACAGAATG 57.035 39.130 0.00 0.00 46.00 2.67
3671 6859 5.833131 ACAAATACAACCAAGTCCACAGAAT 59.167 36.000 0.00 0.00 0.00 2.40
3672 6860 5.197451 ACAAATACAACCAAGTCCACAGAA 58.803 37.500 0.00 0.00 0.00 3.02
3673 6861 4.787551 ACAAATACAACCAAGTCCACAGA 58.212 39.130 0.00 0.00 0.00 3.41
3674 6862 6.817765 ATACAAATACAACCAAGTCCACAG 57.182 37.500 0.00 0.00 0.00 3.66
3675 6863 7.255660 GGAAATACAAATACAACCAAGTCCACA 60.256 37.037 0.00 0.00 0.00 4.17
3676 6864 7.088272 GGAAATACAAATACAACCAAGTCCAC 58.912 38.462 0.00 0.00 0.00 4.02
3677 6865 6.072397 CGGAAATACAAATACAACCAAGTCCA 60.072 38.462 0.00 0.00 0.00 4.02
3678 6866 6.072342 ACGGAAATACAAATACAACCAAGTCC 60.072 38.462 0.00 0.00 0.00 3.85
3679 6867 6.905578 ACGGAAATACAAATACAACCAAGTC 58.094 36.000 0.00 0.00 0.00 3.01
3680 6868 6.887626 ACGGAAATACAAATACAACCAAGT 57.112 33.333 0.00 0.00 0.00 3.16
3681 6869 9.284594 CATAACGGAAATACAAATACAACCAAG 57.715 33.333 0.00 0.00 0.00 3.61
3682 6870 8.794553 ACATAACGGAAATACAAATACAACCAA 58.205 29.630 0.00 0.00 0.00 3.67
3683 6871 8.338072 ACATAACGGAAATACAAATACAACCA 57.662 30.769 0.00 0.00 0.00 3.67
3684 6872 7.637132 CGACATAACGGAAATACAAATACAACC 59.363 37.037 0.00 0.00 0.00 3.77
3685 6873 7.163032 GCGACATAACGGAAATACAAATACAAC 59.837 37.037 0.00 0.00 0.00 3.32
3686 6874 7.148457 TGCGACATAACGGAAATACAAATACAA 60.148 33.333 0.00 0.00 0.00 2.41
3687 6875 6.313164 TGCGACATAACGGAAATACAAATACA 59.687 34.615 0.00 0.00 0.00 2.29
3688 6876 6.707711 TGCGACATAACGGAAATACAAATAC 58.292 36.000 0.00 0.00 0.00 1.89
3689 6877 6.535865 ACTGCGACATAACGGAAATACAAATA 59.464 34.615 0.00 0.00 32.77 1.40
3690 6878 5.353123 ACTGCGACATAACGGAAATACAAAT 59.647 36.000 0.00 0.00 32.77 2.32
3691 6879 4.691685 ACTGCGACATAACGGAAATACAAA 59.308 37.500 0.00 0.00 32.77 2.83
3692 6880 4.247258 ACTGCGACATAACGGAAATACAA 58.753 39.130 0.00 0.00 32.77 2.41
3693 6881 3.852286 ACTGCGACATAACGGAAATACA 58.148 40.909 0.00 0.00 32.77 2.29
3694 6882 5.954434 TTACTGCGACATAACGGAAATAC 57.046 39.130 0.00 0.00 32.77 1.89
3695 6883 5.464057 CCATTACTGCGACATAACGGAAATA 59.536 40.000 0.00 0.00 32.77 1.40
3696 6884 4.272504 CCATTACTGCGACATAACGGAAAT 59.727 41.667 0.00 0.00 32.77 2.17
3697 6885 3.619483 CCATTACTGCGACATAACGGAAA 59.381 43.478 0.00 0.00 32.77 3.13
3698 6886 3.119065 TCCATTACTGCGACATAACGGAA 60.119 43.478 0.00 0.00 32.77 4.30
3699 6887 2.427812 TCCATTACTGCGACATAACGGA 59.572 45.455 0.00 0.00 0.00 4.69
3700 6888 2.816689 TCCATTACTGCGACATAACGG 58.183 47.619 0.00 0.00 0.00 4.44
3701 6889 4.260212 CCTTTCCATTACTGCGACATAACG 60.260 45.833 0.00 0.00 0.00 3.18
3702 6890 4.035208 CCCTTTCCATTACTGCGACATAAC 59.965 45.833 0.00 0.00 0.00 1.89
3703 6891 4.196193 CCCTTTCCATTACTGCGACATAA 58.804 43.478 0.00 0.00 0.00 1.90
3704 6892 3.433031 CCCCTTTCCATTACTGCGACATA 60.433 47.826 0.00 0.00 0.00 2.29
3705 6893 2.643551 CCCTTTCCATTACTGCGACAT 58.356 47.619 0.00 0.00 0.00 3.06
3706 6894 1.339631 CCCCTTTCCATTACTGCGACA 60.340 52.381 0.00 0.00 0.00 4.35
3707 6895 1.339727 ACCCCTTTCCATTACTGCGAC 60.340 52.381 0.00 0.00 0.00 5.19
3708 6896 0.988832 ACCCCTTTCCATTACTGCGA 59.011 50.000 0.00 0.00 0.00 5.10
3709 6897 1.834188 AACCCCTTTCCATTACTGCG 58.166 50.000 0.00 0.00 0.00 5.18
3710 6898 3.068165 GCATAACCCCTTTCCATTACTGC 59.932 47.826 0.00 0.00 0.00 4.40
3711 6899 3.636764 GGCATAACCCCTTTCCATTACTG 59.363 47.826 0.00 0.00 0.00 2.74
3712 6900 3.910989 GGCATAACCCCTTTCCATTACT 58.089 45.455 0.00 0.00 0.00 2.24
3743 6931 5.204292 AGAGTGGGAAAGCTTCTTCTTTTT 58.796 37.500 0.00 0.00 36.50 1.94
3744 6932 4.797743 AGAGTGGGAAAGCTTCTTCTTTT 58.202 39.130 0.00 0.00 36.50 2.27
3745 6933 4.445557 AGAGTGGGAAAGCTTCTTCTTT 57.554 40.909 0.00 0.00 38.85 2.52
3746 6934 4.348168 TGTAGAGTGGGAAAGCTTCTTCTT 59.652 41.667 0.00 0.00 0.00 2.52
3832 7025 6.821160 TGTGTTGAAGACATCAGTTTAGAACA 59.179 34.615 0.00 0.00 41.10 3.18
3881 7074 2.810274 CCTCTGAAACCGCATGGATATG 59.190 50.000 0.00 0.00 39.21 1.78
3882 7075 2.439507 ACCTCTGAAACCGCATGGATAT 59.560 45.455 0.00 0.00 39.21 1.63
3883 7076 1.837439 ACCTCTGAAACCGCATGGATA 59.163 47.619 0.00 0.00 39.21 2.59
3884 7077 0.620556 ACCTCTGAAACCGCATGGAT 59.379 50.000 0.00 0.00 39.21 3.41
3885 7078 0.036388 GACCTCTGAAACCGCATGGA 60.036 55.000 0.00 0.00 39.21 3.41
3886 7079 0.321564 TGACCTCTGAAACCGCATGG 60.322 55.000 0.00 0.00 42.84 3.66
3887 7080 1.742761 ATGACCTCTGAAACCGCATG 58.257 50.000 0.00 0.00 0.00 4.06
3888 7081 2.496899 AATGACCTCTGAAACCGCAT 57.503 45.000 0.00 0.00 0.00 4.73
3920 7117 3.809918 GAGTACGACTCGACTTTGTCT 57.190 47.619 5.20 0.00 35.28 3.41
3955 7152 3.254024 TTCCTTCCCGTGCTGGAGC 62.254 63.158 0.00 0.00 42.00 4.70
3961 7158 1.449778 GCTACCTTCCTTCCCGTGC 60.450 63.158 0.00 0.00 0.00 5.34
3981 7178 1.319799 CCCCATTCCCTCTCCCTCT 59.680 63.158 0.00 0.00 0.00 3.69
3982 7179 1.772156 CCCCCATTCCCTCTCCCTC 60.772 68.421 0.00 0.00 0.00 4.30
3983 7180 2.378522 CCCCCATTCCCTCTCCCT 59.621 66.667 0.00 0.00 0.00 4.20
3984 7181 3.502875 GCCCCCATTCCCTCTCCC 61.503 72.222 0.00 0.00 0.00 4.30
3985 7182 3.502875 GGCCCCCATTCCCTCTCC 61.503 72.222 0.00 0.00 0.00 3.71
3986 7183 2.368878 AGGCCCCCATTCCCTCTC 60.369 66.667 0.00 0.00 0.00 3.20
3993 7190 2.042261 ACTACCGAGGCCCCCATT 59.958 61.111 0.00 0.00 0.00 3.16
4023 7220 3.638160 ACATCTTCTCATCTGCTCTCTCC 59.362 47.826 0.00 0.00 0.00 3.71
4024 7221 4.500205 CCACATCTTCTCATCTGCTCTCTC 60.500 50.000 0.00 0.00 0.00 3.20
4025 7222 3.385433 CCACATCTTCTCATCTGCTCTCT 59.615 47.826 0.00 0.00 0.00 3.10
4030 7227 2.158928 AGAGCCACATCTTCTCATCTGC 60.159 50.000 0.00 0.00 0.00 4.26
4038 7279 2.175878 ACACACAGAGCCACATCTTC 57.824 50.000 0.00 0.00 0.00 2.87
4051 7292 0.030504 CGGCATCAGCAAAACACACA 59.969 50.000 0.00 0.00 44.61 3.72
4065 7306 2.918712 AGCTTAGTAATCAGCGGCAT 57.081 45.000 1.45 0.00 41.24 4.40
4066 7307 2.429250 TGTAGCTTAGTAATCAGCGGCA 59.571 45.455 1.45 0.00 41.24 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.