Multiple sequence alignment - TraesCS5B01G023300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G023300 chr5B 100.000 5747 0 0 1 5747 21539910 21534164 0.000000e+00 10613
1 TraesCS5B01G023300 chr5B 95.161 124 4 1 4223 4344 21706767 21706890 1.630000e-45 195
2 TraesCS5B01G023300 chr5D 90.883 3828 208 62 1446 5177 29163574 29167356 0.000000e+00 5005
3 TraesCS5B01G023300 chr5D 89.171 1967 112 40 3277 5177 29599837 29601768 0.000000e+00 2359
4 TraesCS5B01G023300 chr5D 96.243 559 16 2 2723 3281 29593674 29594227 0.000000e+00 911
5 TraesCS5B01G023300 chr5D 85.957 705 38 22 523 1204 29162581 29163247 0.000000e+00 697
6 TraesCS5B01G023300 chr5D 86.765 408 36 7 1 399 29162070 29162468 6.840000e-119 438
7 TraesCS5B01G023300 chr5D 91.223 319 22 2 5429 5747 29602063 29602375 4.110000e-116 429
8 TraesCS5B01G023300 chr5D 90.909 319 23 2 5429 5747 29167651 29167963 1.910000e-114 424
9 TraesCS5B01G023300 chr5A 89.709 3848 238 67 1421 5182 19976632 19980407 0.000000e+00 4767
10 TraesCS5B01G023300 chr5A 82.095 754 58 35 710 1429 19975810 19976520 1.800000e-159 573
11 TraesCS5B01G023300 chr5A 86.933 375 29 9 31 395 19975034 19975398 2.490000e-108 403
12 TraesCS5B01G023300 chr5A 86.207 319 23 6 5429 5747 19980686 19980983 5.550000e-85 326
13 TraesCS5B01G023300 chr5A 82.648 219 18 7 495 713 19975532 19975730 5.920000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G023300 chr5B 21534164 21539910 5746 True 10613 10613 100.0000 1 5747 1 chr5B.!!$R1 5746
1 TraesCS5B01G023300 chr5D 29162070 29167963 5893 False 1641 5005 88.6285 1 5747 4 chr5D.!!$F2 5746
2 TraesCS5B01G023300 chr5D 29599837 29602375 2538 False 1394 2359 90.1970 3277 5747 2 chr5D.!!$F3 2470
3 TraesCS5B01G023300 chr5D 29593674 29594227 553 False 911 911 96.2430 2723 3281 1 chr5D.!!$F1 558
4 TraesCS5B01G023300 chr5A 19975034 19980983 5949 False 1249 4767 85.5184 31 5747 5 chr5A.!!$F1 5716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 523 0.251033 AAAACCCCGCTCAACCCTAC 60.251 55.000 0.0 0.0 0.00 3.18 F
1259 1478 0.248498 TTACTCGCTCGCCTTCATCG 60.248 55.000 0.0 0.0 0.00 3.84 F
1361 1584 0.249447 TCTGCTCTGTGTGTGGTTCG 60.249 55.000 0.0 0.0 0.00 3.95 F
1578 1922 0.810648 TGCAGATTCCGTCCATTTGC 59.189 50.000 0.0 0.0 0.00 3.68 F
2498 2866 1.068588 GCCTTGGTTTTCCTTGTCACC 59.931 52.381 0.0 0.0 41.38 4.02 F
3240 3631 0.322366 GCTTCCTGCTGAGGCTTCTT 60.322 55.000 0.0 0.0 42.51 2.52 F
4190 4608 0.318445 CGTCTCTCCCGTTTCACGTT 60.318 55.000 0.0 0.0 40.58 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1349 1572 0.179094 GGACTGACGAACCACACACA 60.179 55.000 0.00 0.00 0.00 3.72 R
2569 2937 0.809385 CGGAAGCTGTACTCCTCGAA 59.191 55.000 0.83 0.00 0.00 3.71 R
2648 3018 1.134075 CATCACGCAGCAGTTCAGC 59.866 57.895 0.00 0.00 0.00 4.26 R
2680 3050 1.802636 CCAATGTAACTGCCGGCTG 59.197 57.895 29.48 29.48 0.00 4.85 R
4040 4455 0.464452 AGAACCCCTACGCATACAGC 59.536 55.000 0.00 0.00 40.87 4.40 R
4728 5185 0.613260 TCTAGGCCACAAACGCTGAT 59.387 50.000 5.01 0.00 0.00 2.90 R
5494 6056 0.526662 ACGCAAGAACGACTCCTAGG 59.473 55.000 0.82 0.82 43.62 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.906775 TCGGTTCCCATGTCCCTTAC 59.093 55.000 0.00 0.00 0.00 2.34
83 84 9.783256 GAATTAGAGTTTAGTGAGAAGAGAGTC 57.217 37.037 0.00 0.00 0.00 3.36
87 88 6.369615 AGAGTTTAGTGAGAAGAGAGTCGTAC 59.630 42.308 0.00 0.00 0.00 3.67
155 163 5.473849 TTAATGGGAATTATGTGTGGGGA 57.526 39.130 0.00 0.00 0.00 4.81
178 186 6.263392 GGAGTTTGATAATAAAGCCTCTTCCC 59.737 42.308 0.00 0.00 0.00 3.97
179 187 6.731467 AGTTTGATAATAAAGCCTCTTCCCA 58.269 36.000 0.00 0.00 0.00 4.37
189 197 2.511218 AGCCTCTTCCCATGCTTGATAA 59.489 45.455 0.22 0.00 0.00 1.75
269 277 7.552687 ACCTTGAAGATGAGCGTAAATCAATTA 59.447 33.333 0.00 0.00 0.00 1.40
270 278 8.397906 CCTTGAAGATGAGCGTAAATCAATTAA 58.602 33.333 0.00 0.00 0.00 1.40
271 279 9.941664 CTTGAAGATGAGCGTAAATCAATTAAT 57.058 29.630 0.00 0.00 0.00 1.40
281 289 6.202188 GCGTAAATCAATTAATCTCTCCCGAA 59.798 38.462 0.00 0.00 0.00 4.30
316 328 6.702723 TCCACGGTGTTAATATAATAGTGCAC 59.297 38.462 9.40 9.40 0.00 4.57
348 360 3.596956 TCAAGTCTCCTACCTAGTCCCTT 59.403 47.826 0.00 0.00 0.00 3.95
384 396 9.305925 CATTCTCTCAAAACCCTAAATAATTGC 57.694 33.333 0.00 0.00 0.00 3.56
385 397 7.404671 TCTCTCAAAACCCTAAATAATTGCC 57.595 36.000 0.00 0.00 0.00 4.52
413 470 1.179332 CGATGCAATAAAACACGCCG 58.821 50.000 0.00 0.00 0.00 6.46
433 490 3.181511 CCGAAATTTATCGCTCAAGCACA 60.182 43.478 2.50 0.00 41.40 4.57
443 500 2.217393 CGCTCAAGCACATCTACGAATC 59.783 50.000 2.50 0.00 42.21 2.52
446 503 4.260132 GCTCAAGCACATCTACGAATCTTG 60.260 45.833 0.00 0.00 41.59 3.02
449 506 5.931724 TCAAGCACATCTACGAATCTTGAAA 59.068 36.000 0.00 0.00 36.52 2.69
450 507 6.426633 TCAAGCACATCTACGAATCTTGAAAA 59.573 34.615 0.00 0.00 36.52 2.29
451 508 6.170675 AGCACATCTACGAATCTTGAAAAC 57.829 37.500 0.00 0.00 0.00 2.43
452 509 5.122396 AGCACATCTACGAATCTTGAAAACC 59.878 40.000 0.00 0.00 0.00 3.27
453 510 5.673818 GCACATCTACGAATCTTGAAAACCC 60.674 44.000 0.00 0.00 0.00 4.11
459 516 2.159382 GAATCTTGAAAACCCCGCTCA 58.841 47.619 0.00 0.00 0.00 4.26
462 519 0.313987 CTTGAAAACCCCGCTCAACC 59.686 55.000 0.00 0.00 0.00 3.77
466 523 0.251033 AAAACCCCGCTCAACCCTAC 60.251 55.000 0.00 0.00 0.00 3.18
470 527 1.294138 CCCGCTCAACCCTACGAAA 59.706 57.895 0.00 0.00 0.00 3.46
471 528 0.739813 CCCGCTCAACCCTACGAAAG 60.740 60.000 0.00 0.00 0.00 2.62
480 537 2.063774 CCTACGAAAGGGGGTGTGT 58.936 57.895 0.00 0.00 42.32 3.72
483 540 2.400269 TACGAAAGGGGGTGTGTGGC 62.400 60.000 0.00 0.00 0.00 5.01
488 545 0.253441 AAGGGGGTGTGTGGCCTATA 60.253 55.000 3.32 0.00 0.00 1.31
491 548 1.216930 GGGGGTGTGTGGCCTATAAAT 59.783 52.381 3.32 0.00 0.00 1.40
492 549 2.583143 GGGGTGTGTGGCCTATAAATC 58.417 52.381 3.32 0.00 0.00 2.17
493 550 2.218603 GGGTGTGTGGCCTATAAATCG 58.781 52.381 3.32 0.00 0.00 3.34
499 556 2.049228 GTGGCCTATAAATCGTCGTCG 58.951 52.381 3.32 0.00 38.55 5.12
524 581 3.149196 CGCTCTACCCCATGCAATAAAT 58.851 45.455 0.00 0.00 0.00 1.40
525 582 4.323417 CGCTCTACCCCATGCAATAAATA 58.677 43.478 0.00 0.00 0.00 1.40
526 583 4.759693 CGCTCTACCCCATGCAATAAATAA 59.240 41.667 0.00 0.00 0.00 1.40
527 584 5.240623 CGCTCTACCCCATGCAATAAATAAA 59.759 40.000 0.00 0.00 0.00 1.40
528 585 6.238897 CGCTCTACCCCATGCAATAAATAAAA 60.239 38.462 0.00 0.00 0.00 1.52
529 586 7.523709 CGCTCTACCCCATGCAATAAATAAAAT 60.524 37.037 0.00 0.00 0.00 1.82
571 628 2.131776 AAACCCGCCGGAATTTATCA 57.868 45.000 5.05 0.00 0.00 2.15
575 632 2.226330 CCCGCCGGAATTTATCATTGA 58.774 47.619 5.05 0.00 0.00 2.57
578 635 2.226437 CGCCGGAATTTATCATTGAGGG 59.774 50.000 5.05 0.00 0.00 4.30
579 636 3.486383 GCCGGAATTTATCATTGAGGGA 58.514 45.455 5.05 0.00 0.00 4.20
581 638 4.074970 CCGGAATTTATCATTGAGGGAGG 58.925 47.826 0.00 0.00 0.00 4.30
582 639 3.503748 CGGAATTTATCATTGAGGGAGGC 59.496 47.826 0.00 0.00 0.00 4.70
583 640 3.503748 GGAATTTATCATTGAGGGAGGCG 59.496 47.826 0.00 0.00 0.00 5.52
584 641 4.389374 GAATTTATCATTGAGGGAGGCGA 58.611 43.478 0.00 0.00 0.00 5.54
585 642 2.910688 TTATCATTGAGGGAGGCGAC 57.089 50.000 0.00 0.00 0.00 5.19
586 643 1.048601 TATCATTGAGGGAGGCGACC 58.951 55.000 0.00 0.00 0.00 4.79
587 644 0.692419 ATCATTGAGGGAGGCGACCT 60.692 55.000 2.56 2.56 42.18 3.85
588 645 1.153289 CATTGAGGGAGGCGACCTG 60.153 63.158 7.77 0.00 38.79 4.00
589 646 3.036429 ATTGAGGGAGGCGACCTGC 62.036 63.158 7.77 8.52 41.42 4.85
635 692 4.956700 TCTTCAACCCTTCATAGTCTCGAT 59.043 41.667 0.00 0.00 0.00 3.59
639 696 7.177832 TCAACCCTTCATAGTCTCGATTTAA 57.822 36.000 0.00 0.00 0.00 1.52
640 697 7.617225 TCAACCCTTCATAGTCTCGATTTAAA 58.383 34.615 0.00 0.00 0.00 1.52
641 698 8.265055 TCAACCCTTCATAGTCTCGATTTAAAT 58.735 33.333 0.00 0.00 0.00 1.40
642 699 8.893727 CAACCCTTCATAGTCTCGATTTAAATT 58.106 33.333 1.43 0.00 0.00 1.82
643 700 8.438676 ACCCTTCATAGTCTCGATTTAAATTG 57.561 34.615 8.91 8.91 0.00 2.32
671 728 0.438445 CACACTCGTGTTGGCGTATG 59.562 55.000 0.00 0.00 42.83 2.39
695 752 7.147312 TGAAACAGAGCAAACTTTATTCCATG 58.853 34.615 0.00 0.00 0.00 3.66
698 755 7.944729 ACAGAGCAAACTTTATTCCATGTAT 57.055 32.000 0.00 0.00 0.00 2.29
758 901 5.606348 CTGCTCCTACAGTTCCTAGATTT 57.394 43.478 0.00 0.00 32.78 2.17
880 1040 0.323908 ACACTCTTCTCCCTCCTCCG 60.324 60.000 0.00 0.00 0.00 4.63
881 1041 1.380650 ACTCTTCTCCCTCCTCCGC 60.381 63.158 0.00 0.00 0.00 5.54
882 1042 2.042843 TCTTCTCCCTCCTCCGCC 60.043 66.667 0.00 0.00 0.00 6.13
883 1043 2.042435 CTTCTCCCTCCTCCGCCT 60.042 66.667 0.00 0.00 0.00 5.52
884 1044 2.042843 TTCTCCCTCCTCCGCCTC 60.043 66.667 0.00 0.00 0.00 4.70
885 1045 3.680920 TTCTCCCTCCTCCGCCTCC 62.681 68.421 0.00 0.00 0.00 4.30
886 1046 4.150454 CTCCCTCCTCCGCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
887 1047 4.144727 TCCCTCCTCCGCCTCCTC 62.145 72.222 0.00 0.00 0.00 3.71
890 1050 4.465446 CTCCTCCGCCTCCTCCCA 62.465 72.222 0.00 0.00 0.00 4.37
1171 1369 2.481009 GCTCGCGGCCTTTTTCTC 59.519 61.111 6.13 0.00 34.27 2.87
1177 1375 0.453390 GCGGCCTTTTTCTCTCCATG 59.547 55.000 0.00 0.00 0.00 3.66
1204 1408 6.895782 ACTTCCCGTGGATGATCTTTATTTA 58.104 36.000 11.20 0.00 32.18 1.40
1206 1410 7.998964 ACTTCCCGTGGATGATCTTTATTTATT 59.001 33.333 11.20 0.00 32.18 1.40
1207 1411 8.760980 TTCCCGTGGATGATCTTTATTTATTT 57.239 30.769 0.00 0.00 0.00 1.40
1208 1412 8.760980 TCCCGTGGATGATCTTTATTTATTTT 57.239 30.769 0.00 0.00 0.00 1.82
1209 1413 9.196139 TCCCGTGGATGATCTTTATTTATTTTT 57.804 29.630 0.00 0.00 0.00 1.94
1210 1414 9.248291 CCCGTGGATGATCTTTATTTATTTTTG 57.752 33.333 0.00 0.00 0.00 2.44
1211 1415 9.801873 CCGTGGATGATCTTTATTTATTTTTGT 57.198 29.630 0.00 0.00 0.00 2.83
1243 1462 1.431496 TACGCTGCCTTTTCGGTTAC 58.569 50.000 0.00 0.00 34.25 2.50
1247 1466 0.442699 CTGCCTTTTCGGTTACTCGC 59.557 55.000 0.00 0.00 34.25 5.03
1258 1477 1.201343 GTTACTCGCTCGCCTTCATC 58.799 55.000 0.00 0.00 0.00 2.92
1259 1478 0.248498 TTACTCGCTCGCCTTCATCG 60.248 55.000 0.00 0.00 0.00 3.84
1260 1479 2.663630 TACTCGCTCGCCTTCATCGC 62.664 60.000 0.00 0.00 0.00 4.58
1281 1500 2.506957 CCCAAGGCGCCAAGGTTTT 61.507 57.895 31.54 10.30 0.00 2.43
1292 1511 4.589675 AGGTTTTGCGCCCCGGAA 62.590 61.111 0.73 0.00 35.06 4.30
1298 1521 1.591504 TTTGCGCCCCGGAATTCTTC 61.592 55.000 0.73 0.00 37.01 2.87
1299 1522 3.209812 GCGCCCCGGAATTCTTCC 61.210 66.667 0.73 0.00 46.62 3.46
1314 1537 2.350522 TCTTCCGATCTTTCAGCTTGC 58.649 47.619 0.00 0.00 0.00 4.01
1319 1542 3.623060 TCCGATCTTTCAGCTTGCAATAC 59.377 43.478 0.00 0.00 0.00 1.89
1320 1543 3.374988 CCGATCTTTCAGCTTGCAATACA 59.625 43.478 0.00 0.00 0.00 2.29
1321 1544 4.337763 CGATCTTTCAGCTTGCAATACAC 58.662 43.478 0.00 0.00 0.00 2.90
1329 1552 4.393990 TCAGCTTGCAATACACTGAATGAG 59.606 41.667 15.23 0.00 34.59 2.90
1346 1569 6.336566 TGAATGAGATTACTCTCTTGTCTGC 58.663 40.000 11.02 0.00 46.84 4.26
1349 1572 5.260424 TGAGATTACTCTCTTGTCTGCTCT 58.740 41.667 11.02 0.00 46.84 4.09
1350 1573 5.125257 TGAGATTACTCTCTTGTCTGCTCTG 59.875 44.000 11.02 0.00 46.84 3.35
1351 1574 5.016173 AGATTACTCTCTTGTCTGCTCTGT 58.984 41.667 0.00 0.00 0.00 3.41
1352 1575 4.511617 TTACTCTCTTGTCTGCTCTGTG 57.488 45.455 0.00 0.00 0.00 3.66
1361 1584 0.249447 TCTGCTCTGTGTGTGGTTCG 60.249 55.000 0.00 0.00 0.00 3.95
1386 1609 1.226660 CGGATTGGCGGATTGTTGC 60.227 57.895 0.00 0.00 0.00 4.17
1430 1771 6.127196 TGCAGAGTTTTTACCTTTTGGATTGT 60.127 34.615 0.00 0.00 44.07 2.71
1437 1778 9.027129 GTTTTTACCTTTTGGATTGTTACAGAC 57.973 33.333 0.00 0.00 44.07 3.51
1444 1785 8.576442 CCTTTTGGATTGTTACAGACTGTAAAT 58.424 33.333 25.81 17.98 42.31 1.40
1478 1822 4.624015 AGAACAGCAAACATTTCACATGG 58.376 39.130 0.00 0.00 0.00 3.66
1493 1837 9.642327 CATTTCACATGGTTTGAGATGAATTTA 57.358 29.630 8.75 0.00 37.64 1.40
1494 1838 9.865321 ATTTCACATGGTTTGAGATGAATTTAG 57.135 29.630 0.00 0.00 0.00 1.85
1495 1839 8.408043 TTCACATGGTTTGAGATGAATTTAGT 57.592 30.769 0.00 0.00 0.00 2.24
1496 1840 8.408043 TCACATGGTTTGAGATGAATTTAGTT 57.592 30.769 0.00 0.00 0.00 2.24
1543 1887 9.334947 GATCTCAATAGGAATGTTTTGATCAGA 57.665 33.333 0.00 0.00 0.00 3.27
1578 1922 0.810648 TGCAGATTCCGTCCATTTGC 59.189 50.000 0.00 0.00 0.00 3.68
1580 1924 1.202222 GCAGATTCCGTCCATTTGCAG 60.202 52.381 0.00 0.00 0.00 4.41
1583 1927 3.310774 CAGATTCCGTCCATTTGCAGTAG 59.689 47.826 0.00 0.00 0.00 2.57
1586 1930 4.481368 TTCCGTCCATTTGCAGTAGTAT 57.519 40.909 0.00 0.00 0.00 2.12
1587 1931 5.601583 TTCCGTCCATTTGCAGTAGTATA 57.398 39.130 0.00 0.00 0.00 1.47
1588 1932 4.940463 TCCGTCCATTTGCAGTAGTATAC 58.060 43.478 0.00 0.00 43.47 1.47
1671 2039 1.292061 GTTGTTGCCGTGTCAGTGTA 58.708 50.000 0.00 0.00 0.00 2.90
1839 2207 3.440522 GGTCTATTTTCTGTCTTGCACCC 59.559 47.826 0.00 0.00 0.00 4.61
1852 2220 3.996614 CACCCATCCCGGTGTTTC 58.003 61.111 0.00 0.00 46.97 2.78
1869 2237 6.524239 CGGTGTTTCATGTTATGTGATGAAAG 59.476 38.462 0.00 0.00 44.99 2.62
1883 2251 4.569966 GTGATGAAAGTAGTGCTCATGGAG 59.430 45.833 0.00 0.00 29.97 3.86
1915 2283 1.447838 TCATCTTTCAGGCGTCGGC 60.448 57.895 11.43 11.43 38.90 5.54
2098 2466 4.197750 CCTACCACTACTCGTACATCTGT 58.802 47.826 0.00 0.00 0.00 3.41
2122 2490 2.024414 GGCGAAGGGTAATTTGCTGAT 58.976 47.619 0.00 0.00 39.21 2.90
2160 2528 2.670905 TGTTCATGAAGTGCCGTATTCG 59.329 45.455 8.80 0.00 0.00 3.34
2175 2543 5.070720 CGTATTCGGTTGATCAGATGTTG 57.929 43.478 0.00 0.00 0.00 3.33
2176 2544 4.550831 CGTATTCGGTTGATCAGATGTTGC 60.551 45.833 0.00 0.00 0.00 4.17
2177 2545 2.768253 TCGGTTGATCAGATGTTGCT 57.232 45.000 0.00 0.00 0.00 3.91
2178 2546 2.621338 TCGGTTGATCAGATGTTGCTC 58.379 47.619 0.00 0.00 0.00 4.26
2179 2547 2.028203 TCGGTTGATCAGATGTTGCTCA 60.028 45.455 0.00 0.00 30.44 4.26
2180 2548 2.094894 CGGTTGATCAGATGTTGCTCAC 59.905 50.000 0.00 0.00 32.00 3.51
2181 2549 3.076621 GGTTGATCAGATGTTGCTCACA 58.923 45.455 0.00 0.00 40.71 3.58
2182 2550 3.120060 GGTTGATCAGATGTTGCTCACAC 60.120 47.826 0.00 0.00 38.61 3.82
2256 2624 7.499232 GCTTTGATACTGGAGTATACAATTGGT 59.501 37.037 10.83 0.45 40.99 3.67
2329 2697 2.034939 CCTTGTTTCTGCAGCATGTTGA 59.965 45.455 14.38 0.00 39.31 3.18
2331 2699 3.564235 TGTTTCTGCAGCATGTTGATC 57.436 42.857 14.38 0.00 39.31 2.92
2373 2741 6.770303 TCCATCTCTCTCTAACATACTCTGTG 59.230 42.308 0.00 0.00 38.39 3.66
2402 2770 1.400494 CAGGCGTTATTTTTCGGAGGG 59.600 52.381 0.00 0.00 0.00 4.30
2498 2866 1.068588 GCCTTGGTTTTCCTTGTCACC 59.931 52.381 0.00 0.00 41.38 4.02
2505 2873 3.842925 TTCCTTGTCACCGCCCTGC 62.843 63.158 0.00 0.00 0.00 4.85
2530 2898 3.055963 TGCGTCGGGATAAAAGAGGTTAA 60.056 43.478 0.00 0.00 0.00 2.01
2531 2899 3.554731 GCGTCGGGATAAAAGAGGTTAAG 59.445 47.826 0.00 0.00 0.00 1.85
2538 2906 5.340110 GGGATAAAAGAGGTTAAGGGCTTCT 60.340 44.000 0.00 0.00 0.00 2.85
2542 2910 4.828072 AAGAGGTTAAGGGCTTCTACAG 57.172 45.455 0.00 0.00 0.00 2.74
2554 2922 4.127171 GGCTTCTACAGTTCAGAAACACA 58.873 43.478 0.00 0.00 37.88 3.72
2559 2927 7.467267 GCTTCTACAGTTCAGAAACACATTTCA 60.467 37.037 2.86 0.00 45.78 2.69
2562 2930 6.455360 ACAGTTCAGAAACACATTTCATGT 57.545 33.333 2.86 0.00 45.78 3.21
2564 2932 6.974622 ACAGTTCAGAAACACATTTCATGTTC 59.025 34.615 2.86 0.00 45.78 3.18
2567 2935 7.502226 AGTTCAGAAACACATTTCATGTTCCTA 59.498 33.333 2.86 0.00 45.78 2.94
2569 2937 8.408043 TCAGAAACACATTTCATGTTCCTATT 57.592 30.769 2.86 0.00 45.78 1.73
2575 2943 6.094048 ACACATTTCATGTTCCTATTTCGAGG 59.906 38.462 0.00 0.00 42.70 4.63
2580 2948 6.145338 TCATGTTCCTATTTCGAGGAGTAC 57.855 41.667 0.00 0.00 46.43 2.73
2584 2952 3.899726 TCCTATTTCGAGGAGTACAGCT 58.100 45.455 0.00 0.00 40.89 4.24
2586 2954 4.338682 TCCTATTTCGAGGAGTACAGCTTC 59.661 45.833 0.00 0.00 40.89 3.86
2587 2955 3.528597 ATTTCGAGGAGTACAGCTTCC 57.471 47.619 0.00 0.00 0.00 3.46
2648 3018 2.602933 CGTGCAAGGAATTGTGACAGTG 60.603 50.000 0.00 0.00 0.00 3.66
2680 3050 5.621228 GCTGCGTGATGCTATTTGTTATTAC 59.379 40.000 0.00 0.00 46.63 1.89
2773 3143 8.885693 AATCACTTCTTATTTAGCTTTCCCTT 57.114 30.769 0.00 0.00 0.00 3.95
3038 3427 2.589540 CCGCTGGGAATAGCCACA 59.410 61.111 0.00 0.00 40.59 4.17
3077 3466 2.422597 TCCTTGTACATGCTGGTTTCG 58.577 47.619 0.00 0.00 0.00 3.46
3134 3523 2.302157 GGACCCAGATACCCCTATTTCG 59.698 54.545 0.00 0.00 0.00 3.46
3236 3627 2.350514 GTGCTTCCTGCTGAGGCT 59.649 61.111 11.08 0.00 45.80 4.58
3237 3628 1.303155 GTGCTTCCTGCTGAGGCTT 60.303 57.895 11.08 0.00 45.80 4.35
3238 3629 1.002868 TGCTTCCTGCTGAGGCTTC 60.003 57.895 11.08 0.00 45.80 3.86
3239 3630 1.299321 GCTTCCTGCTGAGGCTTCT 59.701 57.895 0.00 0.00 42.51 2.85
3240 3631 0.322366 GCTTCCTGCTGAGGCTTCTT 60.322 55.000 0.00 0.00 42.51 2.52
3543 3935 9.880157 ATAGTTTCCATTTGAGAAATTTGATGG 57.120 29.630 0.00 2.06 35.77 3.51
3850 4251 7.540400 GGATGTGATCGTAGTAGAATCAATCAG 59.460 40.741 0.00 0.00 0.00 2.90
3851 4252 6.209361 TGTGATCGTAGTAGAATCAATCAGC 58.791 40.000 0.00 0.00 0.00 4.26
3875 4276 3.204526 CCCTCTTATTGAGAAGCAGCTG 58.795 50.000 10.11 10.11 45.39 4.24
3944 4345 8.119226 GTCTACATTTTCTGAGTATGTGCATTC 58.881 37.037 13.64 0.00 34.55 2.67
4081 4496 3.882025 CTGACGGCTTCAGCTTCC 58.118 61.111 8.15 0.00 45.51 3.46
4150 4568 3.988379 TGAACTTTCCTGTGCAATGAC 57.012 42.857 0.00 0.00 0.00 3.06
4157 4575 2.989909 TCCTGTGCAATGACATACTGG 58.010 47.619 6.46 6.46 34.58 4.00
4179 4597 0.520404 TGTCTAACACGCGTCTCTCC 59.480 55.000 9.86 0.00 0.00 3.71
4190 4608 0.318445 CGTCTCTCCCGTTTCACGTT 60.318 55.000 0.00 0.00 40.58 3.99
4313 4731 1.819903 GGTCACTCTGGAGGTACACTC 59.180 57.143 0.00 0.00 45.84 3.51
4321 4739 2.945315 GAGGTACACTCGCATCACG 58.055 57.895 0.00 0.00 45.62 4.35
4473 4923 5.941555 AAATCTAGGGTGAGTACCTCAAG 57.058 43.478 0.00 0.00 46.66 3.02
4496 4953 4.084641 GCAATGATCTCACTCGCTGATAAC 60.085 45.833 0.00 0.00 0.00 1.89
4512 4969 5.342259 GCTGATAACTTTACTTTTGCCAACG 59.658 40.000 0.00 0.00 0.00 4.10
4535 4992 7.661040 ACGAAACATTCAGAATGGAAAGATTT 58.339 30.769 24.22 15.02 43.21 2.17
4722 5179 5.041940 GCAAACGAGATATACGGTTCTTCT 58.958 41.667 2.72 0.00 38.63 2.85
4728 5185 6.318144 ACGAGATATACGGTTCTTCTTCTTCA 59.682 38.462 0.00 0.00 34.93 3.02
4791 5252 6.494059 TCCTTGAGAGATTATATGATCCGGA 58.506 40.000 6.61 6.61 0.00 5.14
4792 5253 6.605194 TCCTTGAGAGATTATATGATCCGGAG 59.395 42.308 11.34 0.00 0.00 4.63
4817 5278 2.270352 TTCACGGAAACCTTGAGCAT 57.730 45.000 0.00 0.00 33.41 3.79
4824 5288 3.359950 GGAAACCTTGAGCATCCTGATT 58.640 45.455 0.00 0.00 0.00 2.57
4846 5310 3.090532 GGACCTTCCCCCGCTGAT 61.091 66.667 0.00 0.00 0.00 2.90
4881 5345 1.866483 ATGGCAAGGCAGGACATGGA 61.866 55.000 2.05 0.00 0.00 3.41
4921 5385 6.039717 ACAAATTCTGAAGCTGTGTACATTGT 59.960 34.615 0.00 0.00 0.00 2.71
5040 5513 7.761249 AGATTAAGATTTGCAACATTGTAAGGC 59.239 33.333 0.00 0.00 34.36 4.35
5041 5514 4.870123 AGATTTGCAACATTGTAAGGCA 57.130 36.364 0.00 6.61 34.36 4.75
5042 5515 5.212532 AGATTTGCAACATTGTAAGGCAA 57.787 34.783 15.30 15.30 42.15 4.52
5057 5530 6.620678 TGTAAGGCAAGATTCATTTAAGTGC 58.379 36.000 0.00 0.00 0.00 4.40
5060 5533 4.082026 AGGCAAGATTCATTTAAGTGCACC 60.082 41.667 14.63 0.00 0.00 5.01
5067 5540 2.811431 TCATTTAAGTGCACCGGAGTTG 59.189 45.455 14.63 5.12 0.00 3.16
5090 5566 7.257790 TGATAAAACTTCAGAGATCTTGGGA 57.742 36.000 0.00 0.00 0.00 4.37
5096 5572 4.081198 ACTTCAGAGATCTTGGGATGACAC 60.081 45.833 0.00 0.00 31.46 3.67
5123 5599 5.314923 GCAGGAAGCAATTCTGAACAATA 57.685 39.130 2.17 0.00 44.79 1.90
5128 5604 6.716628 AGGAAGCAATTCTGAACAATAGTCAA 59.283 34.615 0.00 0.00 0.00 3.18
5141 5617 8.902806 TGAACAATAGTCAATTCTTCAGTTTGT 58.097 29.630 0.00 0.00 30.34 2.83
5152 5628 5.366829 TCTTCAGTTTGTCATGCAAGATG 57.633 39.130 0.00 6.44 38.47 2.90
5155 5631 3.253921 TCAGTTTGTCATGCAAGATGTGG 59.746 43.478 0.00 0.00 38.47 4.17
5157 5633 3.005050 AGTTTGTCATGCAAGATGTGGTG 59.995 43.478 0.00 0.00 38.47 4.17
5164 5640 2.585330 TGCAAGATGTGGTGTTGTGAT 58.415 42.857 0.00 0.00 33.81 3.06
5178 5654 2.479566 TGTGATTTCAGCACCTCCTC 57.520 50.000 0.00 0.00 35.43 3.71
5182 5658 0.990374 ATTTCAGCACCTCCTCTGCT 59.010 50.000 0.00 0.00 46.21 4.24
5183 5659 0.767375 TTTCAGCACCTCCTCTGCTT 59.233 50.000 0.00 0.00 42.54 3.91
5185 5661 0.833409 TCAGCACCTCCTCTGCTTCA 60.833 55.000 0.00 0.00 42.54 3.02
5187 5663 0.835543 AGCACCTCCTCTGCTTCAGT 60.836 55.000 0.00 0.00 42.54 3.41
5188 5664 0.036022 GCACCTCCTCTGCTTCAGTT 59.964 55.000 0.00 0.00 32.61 3.16
5189 5665 1.544314 GCACCTCCTCTGCTTCAGTTT 60.544 52.381 0.00 0.00 32.61 2.66
5190 5666 2.289694 GCACCTCCTCTGCTTCAGTTTA 60.290 50.000 0.00 0.00 32.61 2.01
5191 5667 3.594134 CACCTCCTCTGCTTCAGTTTAG 58.406 50.000 0.00 0.00 32.61 1.85
5192 5668 3.259374 CACCTCCTCTGCTTCAGTTTAGA 59.741 47.826 0.00 0.00 32.61 2.10
5193 5669 4.081198 CACCTCCTCTGCTTCAGTTTAGAT 60.081 45.833 0.00 0.00 32.61 1.98
5195 5671 5.128008 ACCTCCTCTGCTTCAGTTTAGATAC 59.872 44.000 0.00 0.00 32.61 2.24
5196 5672 5.362430 CCTCCTCTGCTTCAGTTTAGATACT 59.638 44.000 0.00 0.00 32.61 2.12
5198 5674 5.361285 TCCTCTGCTTCAGTTTAGATACTCC 59.639 44.000 0.00 0.00 32.61 3.85
5200 5676 6.547880 CCTCTGCTTCAGTTTAGATACTCCTA 59.452 42.308 0.00 0.00 32.61 2.94
5201 5677 7.068839 CCTCTGCTTCAGTTTAGATACTCCTAA 59.931 40.741 0.00 0.00 32.61 2.69
5202 5678 8.362464 TCTGCTTCAGTTTAGATACTCCTAAA 57.638 34.615 0.00 0.00 36.56 1.85
5203 5679 8.812972 TCTGCTTCAGTTTAGATACTCCTAAAA 58.187 33.333 0.00 0.00 39.48 1.52
5204 5680 9.436957 CTGCTTCAGTTTAGATACTCCTAAAAA 57.563 33.333 0.00 0.00 39.48 1.94
5205 5681 9.216117 TGCTTCAGTTTAGATACTCCTAAAAAC 57.784 33.333 0.00 0.00 39.48 2.43
5206 5682 9.216117 GCTTCAGTTTAGATACTCCTAAAAACA 57.784 33.333 0.00 0.00 39.48 2.83
5214 5690 9.653287 TTAGATACTCCTAAAAACATCACACAG 57.347 33.333 0.00 0.00 0.00 3.66
5215 5691 7.680730 AGATACTCCTAAAAACATCACACAGT 58.319 34.615 0.00 0.00 0.00 3.55
5216 5692 8.157476 AGATACTCCTAAAAACATCACACAGTT 58.843 33.333 0.00 0.00 0.00 3.16
5217 5693 9.431887 GATACTCCTAAAAACATCACACAGTTA 57.568 33.333 0.00 0.00 0.00 2.24
5223 5699 8.402472 CCTAAAAACATCACACAGTTAACAGAA 58.598 33.333 8.61 0.00 0.00 3.02
5232 5708 5.700832 CACACAGTTAACAGAAAGATAGGCA 59.299 40.000 8.61 0.00 0.00 4.75
5240 5716 9.476202 GTTAACAGAAAGATAGGCAACAATTTT 57.524 29.630 0.00 0.00 41.41 1.82
5260 5736 9.132521 CAATTTTTCATCATACAGTTTCCACTC 57.867 33.333 0.00 0.00 0.00 3.51
5262 5738 7.439157 TTTTCATCATACAGTTTCCACTCTG 57.561 36.000 0.00 0.00 37.65 3.35
5263 5739 4.507710 TCATCATACAGTTTCCACTCTGC 58.492 43.478 0.00 0.00 35.37 4.26
5275 5753 6.547510 AGTTTCCACTCTGCTTCAGTTAAAAT 59.452 34.615 0.00 0.00 32.61 1.82
5279 5757 6.874134 TCCACTCTGCTTCAGTTAAAATACTC 59.126 38.462 0.00 0.00 32.61 2.59
5280 5758 6.876257 CCACTCTGCTTCAGTTAAAATACTCT 59.124 38.462 0.00 0.00 32.61 3.24
5288 5766 7.510549 TTCAGTTAAAATACTCTTGCAGCTT 57.489 32.000 0.00 0.00 0.00 3.74
5291 5769 7.228507 TCAGTTAAAATACTCTTGCAGCTTCAA 59.771 33.333 0.00 0.00 0.00 2.69
5292 5770 7.324616 CAGTTAAAATACTCTTGCAGCTTCAAC 59.675 37.037 0.00 0.00 0.00 3.18
5294 5772 5.619625 AAATACTCTTGCAGCTTCAACTC 57.380 39.130 0.00 0.00 0.00 3.01
5307 5785 4.709397 AGCTTCAACTCTGAGTATACAGCT 59.291 41.667 19.82 19.82 37.75 4.24
5308 5786 5.186797 AGCTTCAACTCTGAGTATACAGCTT 59.813 40.000 19.82 10.22 37.75 3.74
5310 5788 6.590234 TTCAACTCTGAGTATACAGCTTCA 57.410 37.500 11.30 0.00 37.75 3.02
5312 5790 6.625362 TCAACTCTGAGTATACAGCTTCAAG 58.375 40.000 11.30 3.86 37.75 3.02
5313 5791 6.209589 TCAACTCTGAGTATACAGCTTCAAGT 59.790 38.462 11.30 4.39 37.75 3.16
5314 5792 6.202516 ACTCTGAGTATACAGCTTCAAGTC 57.797 41.667 8.91 0.00 37.75 3.01
5315 5793 5.949354 ACTCTGAGTATACAGCTTCAAGTCT 59.051 40.000 8.91 0.00 37.75 3.24
5316 5794 6.127758 ACTCTGAGTATACAGCTTCAAGTCTG 60.128 42.308 8.91 7.15 37.75 3.51
5317 5795 5.946377 TCTGAGTATACAGCTTCAAGTCTGA 59.054 40.000 13.72 0.00 37.75 3.27
5330 5891 9.732130 AGCTTCAAGTCTGATATTCTAAAAACT 57.268 29.630 0.00 0.00 0.00 2.66
5353 5915 4.460948 ACATCAATCAAATCCAAGCCAC 57.539 40.909 0.00 0.00 0.00 5.01
5360 5922 1.345415 CAAATCCAAGCCACTGCCTTT 59.655 47.619 0.00 0.00 38.69 3.11
5362 5924 0.112995 ATCCAAGCCACTGCCTTTGA 59.887 50.000 0.00 0.00 38.69 2.69
5364 5926 0.752054 CCAAGCCACTGCCTTTGAAA 59.248 50.000 0.00 0.00 38.69 2.69
5369 5931 2.101415 AGCCACTGCCTTTGAAAAGAAC 59.899 45.455 4.34 0.00 38.69 3.01
5395 5957 7.363530 CCAAGTTATGCACCAGACTAACTACTA 60.364 40.741 8.22 0.00 34.26 1.82
5396 5958 7.098074 AGTTATGCACCAGACTAACTACTAC 57.902 40.000 6.40 0.00 33.75 2.73
5398 5960 7.342284 AGTTATGCACCAGACTAACTACTACAT 59.658 37.037 6.40 0.00 33.75 2.29
5399 5961 5.578005 TGCACCAGACTAACTACTACATC 57.422 43.478 0.00 0.00 0.00 3.06
5400 5962 4.095932 TGCACCAGACTAACTACTACATCG 59.904 45.833 0.00 0.00 0.00 3.84
5404 5966 5.035443 CCAGACTAACTACTACATCGCAAC 58.965 45.833 0.00 0.00 0.00 4.17
5407 5969 5.182570 AGACTAACTACTACATCGCAACACA 59.817 40.000 0.00 0.00 0.00 3.72
5408 5970 5.962433 ACTAACTACTACATCGCAACACAT 58.038 37.500 0.00 0.00 0.00 3.21
5409 5971 6.395629 ACTAACTACTACATCGCAACACATT 58.604 36.000 0.00 0.00 0.00 2.71
5410 5972 7.541162 ACTAACTACTACATCGCAACACATTA 58.459 34.615 0.00 0.00 0.00 1.90
5411 5973 8.195436 ACTAACTACTACATCGCAACACATTAT 58.805 33.333 0.00 0.00 0.00 1.28
5412 5974 7.843490 AACTACTACATCGCAACACATTATT 57.157 32.000 0.00 0.00 0.00 1.40
5413 5975 8.936070 AACTACTACATCGCAACACATTATTA 57.064 30.769 0.00 0.00 0.00 0.98
5414 5976 9.542462 AACTACTACATCGCAACACATTATTAT 57.458 29.630 0.00 0.00 0.00 1.28
5424 5986 9.974980 TCGCAACACATTATTATATAGAGAACA 57.025 29.630 0.00 0.00 0.00 3.18
5444 6006 7.630082 AGAACATTACAATACAGTATGGTGGT 58.370 34.615 10.56 4.02 43.62 4.16
5451 6013 6.978338 ACAATACAGTATGGTGGTAGTATCG 58.022 40.000 0.00 0.00 43.62 2.92
5453 6015 2.626743 ACAGTATGGTGGTAGTATCGGC 59.373 50.000 0.00 0.00 43.62 5.54
5468 6030 1.267121 TCGGCTATATCCCCTTCTGC 58.733 55.000 0.00 0.00 0.00 4.26
5474 6036 2.212752 ATATCCCCTTCTGCTTCCCA 57.787 50.000 0.00 0.00 0.00 4.37
5480 6042 1.481242 CCCTTCTGCTTCCCAAGGTTT 60.481 52.381 0.00 0.00 35.77 3.27
5485 6047 1.615392 CTGCTTCCCAAGGTTTTCTGG 59.385 52.381 0.00 0.00 0.00 3.86
5490 6052 4.202357 GCTTCCCAAGGTTTTCTGGAAAAT 60.202 41.667 10.98 0.00 41.64 1.82
5493 6055 4.038642 TCCCAAGGTTTTCTGGAAAATTCG 59.961 41.667 10.98 2.59 41.64 3.34
5494 6056 3.740832 CCAAGGTTTTCTGGAAAATTCGC 59.259 43.478 10.98 0.20 41.64 4.70
5528 6090 4.995124 TCTTGCGTAGGTTGTAGAAGATC 58.005 43.478 0.00 0.00 0.00 2.75
5534 6096 1.405821 AGGTTGTAGAAGATCGAGCCG 59.594 52.381 0.00 0.00 0.00 5.52
5550 6112 1.754803 AGCCGTCAATCGTCTCCATAA 59.245 47.619 0.00 0.00 37.94 1.90
5615 6177 1.295423 GCGCCCTACAAGACAAGGA 59.705 57.895 0.00 0.00 34.58 3.36
5616 6178 0.321298 GCGCCCTACAAGACAAGGAA 60.321 55.000 0.00 0.00 34.58 3.36
5629 6191 4.207955 AGACAAGGAAGTGAAAGGAAACC 58.792 43.478 0.00 0.00 0.00 3.27
5637 6199 4.453480 AGTGAAAGGAAACCTCAATGGA 57.547 40.909 0.00 0.00 39.71 3.41
5642 6204 6.424812 GTGAAAGGAAACCTCAATGGAATTTG 59.575 38.462 0.00 0.00 39.71 2.32
5643 6205 6.099557 TGAAAGGAAACCTCAATGGAATTTGT 59.900 34.615 0.00 0.00 39.71 2.83
5644 6206 5.728637 AGGAAACCTCAATGGAATTTGTC 57.271 39.130 0.00 0.00 39.71 3.18
5645 6207 5.397360 AGGAAACCTCAATGGAATTTGTCT 58.603 37.500 0.00 0.00 39.71 3.41
5646 6208 6.552008 AGGAAACCTCAATGGAATTTGTCTA 58.448 36.000 0.00 0.00 39.71 2.59
5666 6228 8.534333 TGTCTAGTCTAGTGTAAAAGCATTTG 57.466 34.615 6.77 0.00 39.02 2.32
5721 6283 5.548406 AGATTATAACATACCCAAGCCGAC 58.452 41.667 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 5.772825 CAATACATTGTAAGGGACATGGG 57.227 43.478 0.00 0.00 38.07 4.00
83 84 7.220108 TGAAACGACATGAATAATCTCTGTACG 59.780 37.037 0.00 0.00 0.00 3.67
87 88 8.066595 GGAATGAAACGACATGAATAATCTCTG 58.933 37.037 0.00 0.00 0.00 3.35
155 163 6.731467 TGGGAAGAGGCTTTATTATCAAACT 58.269 36.000 0.00 0.00 0.00 2.66
178 186 2.173356 TCCACCCCTCTTATCAAGCATG 59.827 50.000 0.00 0.00 0.00 4.06
179 187 2.492025 TCCACCCCTCTTATCAAGCAT 58.508 47.619 0.00 0.00 0.00 3.79
189 197 0.916358 CCACCTGAATCCACCCCTCT 60.916 60.000 0.00 0.00 0.00 3.69
237 245 2.611292 CGCTCATCTTCAAGGTTCATCC 59.389 50.000 0.00 0.00 0.00 3.51
246 254 9.935682 GATTAATTGATTTACGCTCATCTTCAA 57.064 29.630 0.00 0.00 0.00 2.69
255 263 5.696724 CGGGAGAGATTAATTGATTTACGCT 59.303 40.000 0.00 0.00 0.00 5.07
257 265 7.709269 TTCGGGAGAGATTAATTGATTTACG 57.291 36.000 0.00 0.00 41.75 3.18
269 277 0.106894 GGCGGAATTCGGGAGAGATT 59.893 55.000 14.14 0.00 41.75 2.40
270 278 1.749033 GGCGGAATTCGGGAGAGAT 59.251 57.895 14.14 0.00 41.75 2.75
271 279 2.432300 GGGCGGAATTCGGGAGAGA 61.432 63.158 14.14 0.00 41.75 3.10
327 339 3.673543 AGGGACTAGGTAGGAGACTTG 57.326 52.381 0.00 0.00 38.77 3.16
348 360 8.437575 AGGGTTTTGAGAGAATGTAAGTTTAGA 58.562 33.333 0.00 0.00 0.00 2.10
396 453 2.999507 TTCGGCGTGTTTTATTGCAT 57.000 40.000 6.85 0.00 0.00 3.96
413 470 5.814783 AGATGTGCTTGAGCGATAAATTTC 58.185 37.500 0.00 0.00 45.83 2.17
433 490 4.189231 CGGGGTTTTCAAGATTCGTAGAT 58.811 43.478 0.00 0.00 35.04 1.98
443 500 0.313987 GGTTGAGCGGGGTTTTCAAG 59.686 55.000 0.00 0.00 32.00 3.02
446 503 0.037160 TAGGGTTGAGCGGGGTTTTC 59.963 55.000 0.00 0.00 0.00 2.29
449 506 2.951101 CGTAGGGTTGAGCGGGGTT 61.951 63.158 0.00 0.00 0.00 4.11
450 507 3.387947 CGTAGGGTTGAGCGGGGT 61.388 66.667 0.00 0.00 0.00 4.95
451 508 2.175035 TTTCGTAGGGTTGAGCGGGG 62.175 60.000 0.00 0.00 0.00 5.73
452 509 0.739813 CTTTCGTAGGGTTGAGCGGG 60.740 60.000 0.00 0.00 0.00 6.13
453 510 0.739813 CCTTTCGTAGGGTTGAGCGG 60.740 60.000 0.00 0.00 40.67 5.52
462 519 0.321298 CACACACCCCCTTTCGTAGG 60.321 60.000 0.12 0.12 44.33 3.18
466 523 2.983592 GCCACACACCCCCTTTCG 60.984 66.667 0.00 0.00 0.00 3.46
470 527 0.253441 TTATAGGCCACACACCCCCT 60.253 55.000 5.01 0.00 0.00 4.79
471 528 0.626916 TTTATAGGCCACACACCCCC 59.373 55.000 5.01 0.00 0.00 5.40
475 532 2.538449 CGACGATTTATAGGCCACACAC 59.462 50.000 5.01 0.00 0.00 3.82
477 534 2.793232 GACGACGATTTATAGGCCACAC 59.207 50.000 5.01 0.00 0.00 3.82
479 536 2.049228 CGACGACGATTTATAGGCCAC 58.951 52.381 5.01 0.00 42.66 5.01
480 537 1.001048 CCGACGACGATTTATAGGCCA 60.001 52.381 9.28 0.00 42.66 5.36
483 540 1.668047 GGGCCGACGACGATTTATAGG 60.668 57.143 9.28 0.00 42.66 2.57
493 550 4.549516 GTAGAGCGGGCCGACGAC 62.550 72.222 33.44 23.16 35.47 4.34
499 556 4.256180 CATGGGGTAGAGCGGGCC 62.256 72.222 0.00 0.00 0.00 5.80
509 566 5.741673 GCGGATTTTATTTATTGCATGGGGT 60.742 40.000 0.00 0.00 0.00 4.95
524 581 1.817941 GGCAGAGCGGCGGATTTTA 60.818 57.895 9.78 0.00 33.57 1.52
525 582 3.134127 GGCAGAGCGGCGGATTTT 61.134 61.111 9.78 0.00 33.57 1.82
548 605 4.276431 TGATAAATTCCGGCGGGTTTTATC 59.724 41.667 35.90 35.90 42.28 1.75
560 617 3.503748 GCCTCCCTCAATGATAAATTCCG 59.496 47.826 0.00 0.00 0.00 4.30
571 628 3.036429 GCAGGTCGCCTCCCTCAAT 62.036 63.158 0.00 0.00 32.94 2.57
590 647 7.040473 AGAGGTCATAGTCATAAAACCGTAG 57.960 40.000 0.00 0.00 32.01 3.51
591 648 7.123098 TGAAGAGGTCATAGTCATAAAACCGTA 59.877 37.037 0.00 0.00 32.01 4.02
592 649 5.934402 AGAGGTCATAGTCATAAAACCGT 57.066 39.130 0.00 0.00 32.01 4.83
659 716 2.412847 GCTCTGTTTCATACGCCAACAC 60.413 50.000 0.00 0.00 0.00 3.32
671 728 7.147976 ACATGGAATAAAGTTTGCTCTGTTTC 58.852 34.615 0.00 0.00 0.00 2.78
695 752 1.930567 ACGTACGTGGCATGGAATAC 58.069 50.000 22.14 3.94 0.00 1.89
698 755 0.456482 CGTACGTACGTGGCATGGAA 60.456 55.000 33.95 5.06 44.13 3.53
806 949 2.788065 GCTTCTCGTTGGCTTTTATCGC 60.788 50.000 0.00 0.00 0.00 4.58
880 1040 1.575447 ATTCTTGGGTGGGAGGAGGC 61.575 60.000 0.00 0.00 0.00 4.70
881 1041 0.548510 GATTCTTGGGTGGGAGGAGG 59.451 60.000 0.00 0.00 0.00 4.30
882 1042 0.548510 GGATTCTTGGGTGGGAGGAG 59.451 60.000 0.00 0.00 0.00 3.69
883 1043 0.919289 GGGATTCTTGGGTGGGAGGA 60.919 60.000 0.00 0.00 0.00 3.71
884 1044 1.615262 GGGATTCTTGGGTGGGAGG 59.385 63.158 0.00 0.00 0.00 4.30
885 1045 1.615262 GGGGATTCTTGGGTGGGAG 59.385 63.158 0.00 0.00 0.00 4.30
886 1046 2.305607 CGGGGATTCTTGGGTGGGA 61.306 63.158 0.00 0.00 0.00 4.37
887 1047 2.275418 CGGGGATTCTTGGGTGGG 59.725 66.667 0.00 0.00 0.00 4.61
888 1048 2.440247 GCGGGGATTCTTGGGTGG 60.440 66.667 0.00 0.00 0.00 4.61
889 1049 2.824041 CGCGGGGATTCTTGGGTG 60.824 66.667 0.00 0.00 0.00 4.61
890 1050 4.109675 CCGCGGGGATTCTTGGGT 62.110 66.667 20.10 0.00 34.06 4.51
1158 1353 0.453390 CATGGAGAGAAAAAGGCCGC 59.547 55.000 0.00 0.00 0.00 6.53
1159 1354 1.098050 CCATGGAGAGAAAAAGGCCG 58.902 55.000 5.56 0.00 0.00 6.13
1160 1355 1.005924 TCCCATGGAGAGAAAAAGGCC 59.994 52.381 15.22 0.00 0.00 5.19
1206 1410 7.860373 GGCAGCGTATATAATCAATCAACAAAA 59.140 33.333 0.00 0.00 0.00 2.44
1207 1411 7.228507 AGGCAGCGTATATAATCAATCAACAAA 59.771 33.333 0.00 0.00 0.00 2.83
1208 1412 6.710295 AGGCAGCGTATATAATCAATCAACAA 59.290 34.615 0.00 0.00 0.00 2.83
1209 1413 6.230472 AGGCAGCGTATATAATCAATCAACA 58.770 36.000 0.00 0.00 0.00 3.33
1210 1414 6.727824 AGGCAGCGTATATAATCAATCAAC 57.272 37.500 0.00 0.00 0.00 3.18
1211 1415 7.744087 AAAGGCAGCGTATATAATCAATCAA 57.256 32.000 0.00 0.00 0.00 2.57
1214 1418 6.128282 CCGAAAAGGCAGCGTATATAATCAAT 60.128 38.462 0.00 0.00 0.00 2.57
1243 1462 3.326210 GCGATGAAGGCGAGCGAG 61.326 66.667 0.00 0.00 0.00 5.03
1264 1483 1.300853 CAAAACCTTGGCGCCTTGG 60.301 57.895 29.70 28.84 0.00 3.61
1281 1500 2.437716 GAAGAATTCCGGGGCGCA 60.438 61.111 10.83 0.00 39.83 6.09
1298 1521 3.374988 TGTATTGCAAGCTGAAAGATCGG 59.625 43.478 4.94 0.00 34.07 4.18
1299 1522 4.093998 AGTGTATTGCAAGCTGAAAGATCG 59.906 41.667 4.94 0.00 34.07 3.69
1314 1537 9.814899 AAGAGAGTAATCTCATTCAGTGTATTG 57.185 33.333 21.33 0.00 42.66 1.90
1319 1542 7.488792 CAGACAAGAGAGTAATCTCATTCAGTG 59.511 40.741 21.33 11.23 42.66 3.66
1320 1543 7.546358 CAGACAAGAGAGTAATCTCATTCAGT 58.454 38.462 21.33 11.62 42.66 3.41
1321 1544 6.476380 GCAGACAAGAGAGTAATCTCATTCAG 59.524 42.308 21.33 11.77 42.66 3.02
1329 1552 5.101628 CACAGAGCAGACAAGAGAGTAATC 58.898 45.833 0.00 0.00 0.00 1.75
1346 1569 1.202417 ACTGACGAACCACACACAGAG 60.202 52.381 0.00 0.00 0.00 3.35
1349 1572 0.179094 GGACTGACGAACCACACACA 60.179 55.000 0.00 0.00 0.00 3.72
1350 1573 1.213094 CGGACTGACGAACCACACAC 61.213 60.000 0.00 0.00 35.47 3.82
1351 1574 1.066752 CGGACTGACGAACCACACA 59.933 57.895 0.00 0.00 35.47 3.72
1352 1575 1.663702 CCGGACTGACGAACCACAC 60.664 63.158 0.00 0.00 35.47 3.82
1386 1609 2.227388 GCAGGAAATCACACCACAGAAG 59.773 50.000 0.00 0.00 0.00 2.85
1430 1771 5.700832 CAGTGGAAGCATTTACAGTCTGTAA 59.299 40.000 19.42 19.42 40.70 2.41
1493 1837 4.418392 CAGACCGCGTGTAGTAATTAACT 58.582 43.478 4.92 0.00 42.62 2.24
1494 1838 3.549070 CCAGACCGCGTGTAGTAATTAAC 59.451 47.826 4.92 0.00 0.00 2.01
1495 1839 3.429272 CCCAGACCGCGTGTAGTAATTAA 60.429 47.826 4.92 0.00 0.00 1.40
1496 1840 2.099592 CCCAGACCGCGTGTAGTAATTA 59.900 50.000 4.92 0.00 0.00 1.40
1543 1887 6.489361 GGAATCTGCATCTCATAGTCCATTTT 59.511 38.462 0.00 0.00 36.44 1.82
1587 1931 9.924010 ATCTTCTATGGAAAGTACTACTGTAGT 57.076 33.333 22.72 22.72 42.68 2.73
1589 1933 9.916360 TGATCTTCTATGGAAAGTACTACTGTA 57.084 33.333 0.00 0.00 0.00 2.74
1590 1934 8.824756 TGATCTTCTATGGAAAGTACTACTGT 57.175 34.615 0.00 0.00 0.00 3.55
1591 1935 8.356657 CCTGATCTTCTATGGAAAGTACTACTG 58.643 40.741 0.00 0.00 0.00 2.74
1592 1936 7.014808 GCCTGATCTTCTATGGAAAGTACTACT 59.985 40.741 0.00 0.00 0.00 2.57
1593 1937 7.014808 AGCCTGATCTTCTATGGAAAGTACTAC 59.985 40.741 0.00 0.00 0.00 2.73
1596 1940 6.168270 AGCCTGATCTTCTATGGAAAGTAC 57.832 41.667 0.00 0.00 0.00 2.73
1811 2179 4.640771 AGACAGAAAATAGACCCTGCAA 57.359 40.909 0.00 0.00 0.00 4.08
1817 2185 3.440522 GGGTGCAAGACAGAAAATAGACC 59.559 47.826 0.00 0.00 0.00 3.85
1839 2207 3.694072 ACATAACATGAAACACCGGGATG 59.306 43.478 6.32 0.00 0.00 3.51
1852 2220 7.064966 TGAGCACTACTTTCATCACATAACATG 59.935 37.037 0.00 0.00 0.00 3.21
1883 2251 6.971184 CCTGAAAGATGACACAAAATAGATGC 59.029 38.462 0.00 0.00 34.07 3.91
2098 2466 1.271102 GCAAATTACCCTTCGCCAACA 59.729 47.619 0.00 0.00 0.00 3.33
2122 2490 4.140536 TGAACAATGTGCACTCCAACATA 58.859 39.130 19.41 0.00 0.00 2.29
2175 2543 4.574599 AAATGTCAAAGGAAGTGTGAGC 57.425 40.909 0.00 0.00 0.00 4.26
2176 2544 5.894807 ACAAAATGTCAAAGGAAGTGTGAG 58.105 37.500 0.00 0.00 0.00 3.51
2177 2545 5.913137 ACAAAATGTCAAAGGAAGTGTGA 57.087 34.783 0.00 0.00 0.00 3.58
2178 2546 6.332630 AGAACAAAATGTCAAAGGAAGTGTG 58.667 36.000 0.00 0.00 0.00 3.82
2179 2547 6.405842 GGAGAACAAAATGTCAAAGGAAGTGT 60.406 38.462 0.00 0.00 0.00 3.55
2180 2548 5.979517 GGAGAACAAAATGTCAAAGGAAGTG 59.020 40.000 0.00 0.00 0.00 3.16
2181 2549 5.893824 AGGAGAACAAAATGTCAAAGGAAGT 59.106 36.000 0.00 0.00 0.00 3.01
2182 2550 6.396829 AGGAGAACAAAATGTCAAAGGAAG 57.603 37.500 0.00 0.00 0.00 3.46
2256 2624 4.776322 CGGGCAACGGCTGATCCA 62.776 66.667 0.00 0.00 40.87 3.41
2329 2697 5.825593 TGGAAGGTGAAGAAACTACTGAT 57.174 39.130 0.00 0.00 0.00 2.90
2331 2699 5.799213 AGATGGAAGGTGAAGAAACTACTG 58.201 41.667 0.00 0.00 0.00 2.74
2373 2741 5.227184 CGAAAAATAACGCCTGAAAGCATAC 59.773 40.000 0.00 0.00 0.00 2.39
2402 2770 2.057137 TCCATGGCAGACTATTTGGC 57.943 50.000 6.96 0.00 41.12 4.52
2505 2873 3.243771 ACCTCTTTTATCCCGACGCATAG 60.244 47.826 0.00 0.00 0.00 2.23
2530 2898 3.391296 TGTTTCTGAACTGTAGAAGCCCT 59.609 43.478 5.18 0.00 35.36 5.19
2531 2899 3.498777 GTGTTTCTGAACTGTAGAAGCCC 59.501 47.826 5.18 0.00 35.36 5.19
2554 2922 6.653989 ACTCCTCGAAATAGGAACATGAAAT 58.346 36.000 0.00 0.00 45.08 2.17
2559 2927 5.452077 GCTGTACTCCTCGAAATAGGAACAT 60.452 44.000 0.00 0.00 45.08 2.71
2562 2930 4.279145 AGCTGTACTCCTCGAAATAGGAA 58.721 43.478 0.00 0.00 45.08 3.36
2564 2932 4.500035 GGAAGCTGTACTCCTCGAAATAGG 60.500 50.000 0.00 0.00 38.06 2.57
2567 2935 2.159226 CGGAAGCTGTACTCCTCGAAAT 60.159 50.000 0.83 0.00 0.00 2.17
2569 2937 0.809385 CGGAAGCTGTACTCCTCGAA 59.191 55.000 0.83 0.00 0.00 3.71
2575 2943 6.972722 AGAGTAAATATCGGAAGCTGTACTC 58.027 40.000 0.00 0.00 37.53 2.59
2580 2948 6.910536 ACAAAGAGTAAATATCGGAAGCTG 57.089 37.500 0.00 0.00 0.00 4.24
2608 2976 5.699001 TGCACGAATGTACTCTGTTACAAAT 59.301 36.000 0.00 0.00 0.00 2.32
2648 3018 1.134075 CATCACGCAGCAGTTCAGC 59.866 57.895 0.00 0.00 0.00 4.26
2680 3050 1.802636 CCAATGTAACTGCCGGCTG 59.197 57.895 29.48 29.48 0.00 4.85
2773 3143 6.981559 GTGTTTAAGCACACTATTTCCCAAAA 59.018 34.615 16.58 0.00 43.32 2.44
3038 3427 4.012374 AGGAACAGCAAATCGTCAATGAT 58.988 39.130 0.00 0.00 0.00 2.45
3077 3466 2.482721 CACCAGACCGACAATAACAACC 59.517 50.000 0.00 0.00 0.00 3.77
3246 3637 6.113411 ACCTAAAATAAGACAGCGCAGTAAT 58.887 36.000 11.47 2.32 0.00 1.89
3543 3935 6.860080 TGAAATCTCATCTTGAGCCAAAATC 58.140 36.000 0.00 0.00 43.95 2.17
3604 4005 6.123651 TGCAACCAAACTTAACTCCTTTAGA 58.876 36.000 0.00 0.00 0.00 2.10
3850 4251 2.205911 GCTTCTCAATAAGAGGGTCGC 58.794 52.381 0.00 0.00 44.81 5.19
3851 4252 3.452474 CTGCTTCTCAATAAGAGGGTCG 58.548 50.000 0.00 0.00 44.81 4.79
3875 4276 6.455246 GCAATTTCCTAGACTTACTTGCGTAC 60.455 42.308 0.00 0.00 0.00 3.67
3909 4310 5.849510 TCAGAAAATGTAGACTCGACCAAA 58.150 37.500 0.00 0.00 0.00 3.28
3916 4317 6.813649 TGCACATACTCAGAAAATGTAGACTC 59.186 38.462 0.00 0.00 32.70 3.36
3925 4326 9.890629 ATAAGTAGAATGCACATACTCAGAAAA 57.109 29.630 7.54 0.00 0.00 2.29
3944 4345 6.812160 CCGGTTAGCCAGCTTATAATAAGTAG 59.188 42.308 0.00 0.00 34.09 2.57
3954 4355 1.626825 AGAAACCGGTTAGCCAGCTTA 59.373 47.619 22.60 0.00 34.09 3.09
4036 4451 1.143838 CCCTACGCATACAGCTGCA 59.856 57.895 15.27 0.00 42.40 4.41
4040 4455 0.464452 AGAACCCCTACGCATACAGC 59.536 55.000 0.00 0.00 40.87 4.40
4081 4496 1.153353 ACAATGGCAGGAACGTTACG 58.847 50.000 4.51 2.19 0.00 3.18
4150 4568 2.540515 CGTGTTAGACAGGCCAGTATG 58.459 52.381 5.01 0.00 0.00 2.39
4190 4608 3.455910 AGAATAAGCACATCACCAGGCTA 59.544 43.478 0.00 0.00 35.11 3.93
4313 4731 1.127571 CGTGAAAATGCCGTGATGCG 61.128 55.000 0.00 0.00 40.95 4.73
4321 4739 1.131315 GGAGAGAAGCGTGAAAATGCC 59.869 52.381 0.00 0.00 0.00 4.40
4473 4923 1.931906 TCAGCGAGTGAGATCATTGC 58.068 50.000 0.00 0.00 0.00 3.56
4496 4953 6.254589 TGAATGTTTCGTTGGCAAAAGTAAAG 59.745 34.615 0.00 0.00 0.00 1.85
4512 4969 8.822652 ACAAATCTTTCCATTCTGAATGTTTC 57.177 30.769 24.38 0.00 37.18 2.78
4557 5014 6.491745 TGAAGAACATACATAGGTTGCCAAAA 59.508 34.615 0.00 0.00 29.47 2.44
4558 5015 6.007076 TGAAGAACATACATAGGTTGCCAAA 58.993 36.000 0.00 0.00 29.47 3.28
4559 5016 5.565509 TGAAGAACATACATAGGTTGCCAA 58.434 37.500 0.00 0.00 29.47 4.52
4560 5017 5.172687 TGAAGAACATACATAGGTTGCCA 57.827 39.130 0.00 0.00 29.47 4.92
4561 5018 4.576463 CCTGAAGAACATACATAGGTTGCC 59.424 45.833 0.00 0.00 29.47 4.52
4562 5019 4.576463 CCCTGAAGAACATACATAGGTTGC 59.424 45.833 0.00 0.00 29.47 4.17
4564 5021 4.788617 ACCCCTGAAGAACATACATAGGTT 59.211 41.667 0.00 0.00 32.32 3.50
4566 5023 4.444876 CCACCCCTGAAGAACATACATAGG 60.445 50.000 0.00 0.00 0.00 2.57
4567 5024 4.708177 CCACCCCTGAAGAACATACATAG 58.292 47.826 0.00 0.00 0.00 2.23
4568 5025 3.118038 GCCACCCCTGAAGAACATACATA 60.118 47.826 0.00 0.00 0.00 2.29
4569 5026 2.357154 GCCACCCCTGAAGAACATACAT 60.357 50.000 0.00 0.00 0.00 2.29
4611 5068 3.645268 GACCCCCATCACCAGCCAC 62.645 68.421 0.00 0.00 0.00 5.01
4722 5179 1.266718 GCCACAAACGCTGATGAAGAA 59.733 47.619 0.00 0.00 0.00 2.52
4728 5185 0.613260 TCTAGGCCACAAACGCTGAT 59.387 50.000 5.01 0.00 0.00 2.90
4817 5278 1.584724 GAAGGTCCCTCCAATCAGGA 58.415 55.000 0.00 0.00 46.75 3.86
4936 5400 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
4937 5401 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
4948 5412 9.720769 GGCACATATATATGATGATGATGATGA 57.279 33.333 26.05 0.00 37.15 2.92
4949 5413 9.726438 AGGCACATATATATGATGATGATGATG 57.274 33.333 26.05 12.34 37.15 3.07
4950 5414 9.945904 GAGGCACATATATATGATGATGATGAT 57.054 33.333 26.05 7.22 37.15 2.45
4951 5415 8.086522 CGAGGCACATATATATGATGATGATGA 58.913 37.037 26.05 0.00 37.15 2.92
4952 5416 7.871463 ACGAGGCACATATATATGATGATGATG 59.129 37.037 26.05 14.16 37.15 3.07
4953 5417 7.960262 ACGAGGCACATATATATGATGATGAT 58.040 34.615 26.05 8.67 37.15 2.45
4954 5418 7.352079 ACGAGGCACATATATATGATGATGA 57.648 36.000 26.05 0.00 37.15 2.92
5016 5480 7.385267 TGCCTTACAATGTTGCAAATCTTAAT 58.615 30.769 0.00 0.00 0.00 1.40
5017 5481 6.753180 TGCCTTACAATGTTGCAAATCTTAA 58.247 32.000 0.00 0.00 0.00 1.85
5023 5487 4.662468 TCTTGCCTTACAATGTTGCAAA 57.338 36.364 15.02 0.00 40.96 3.68
5035 5508 6.350110 GGTGCACTTAAATGAATCTTGCCTTA 60.350 38.462 17.98 0.00 0.00 2.69
5040 5513 4.155826 TCCGGTGCACTTAAATGAATCTTG 59.844 41.667 17.98 0.00 0.00 3.02
5041 5514 4.331968 TCCGGTGCACTTAAATGAATCTT 58.668 39.130 17.98 0.00 0.00 2.40
5042 5515 3.941483 CTCCGGTGCACTTAAATGAATCT 59.059 43.478 17.98 0.00 0.00 2.40
5057 5530 4.994852 TCTGAAGTTTTATCAACTCCGGTG 59.005 41.667 0.00 0.00 0.00 4.94
5060 5533 7.038659 AGATCTCTGAAGTTTTATCAACTCCG 58.961 38.462 0.00 0.00 0.00 4.63
5067 5540 7.989741 TCATCCCAAGATCTCTGAAGTTTTATC 59.010 37.037 0.00 0.00 0.00 1.75
5090 5566 0.959372 GCTTCCTGCTGCAGTGTCAT 60.959 55.000 26.41 0.00 38.95 3.06
5096 5572 1.135373 CAGAATTGCTTCCTGCTGCAG 60.135 52.381 22.44 22.44 43.37 4.41
5119 5595 9.338291 CATGACAAACTGAAGAATTGACTATTG 57.662 33.333 0.00 0.00 0.00 1.90
5120 5596 8.025445 GCATGACAAACTGAAGAATTGACTATT 58.975 33.333 0.00 0.00 0.00 1.73
5123 5599 5.300034 TGCATGACAAACTGAAGAATTGACT 59.700 36.000 0.00 0.00 0.00 3.41
5128 5604 6.015688 ACATCTTGCATGACAAACTGAAGAAT 60.016 34.615 4.14 0.00 37.96 2.40
5141 5617 2.293955 CACAACACCACATCTTGCATGA 59.706 45.455 4.57 4.57 0.00 3.07
5152 5628 2.731217 GTGCTGAAATCACAACACCAC 58.269 47.619 0.00 0.00 32.76 4.16
5155 5631 2.030805 GGAGGTGCTGAAATCACAACAC 60.031 50.000 0.00 0.00 36.51 3.32
5157 5633 2.485814 GAGGAGGTGCTGAAATCACAAC 59.514 50.000 0.00 0.00 36.22 3.32
5178 5654 9.436957 TTTTTAGGAGTATCTAAACTGAAGCAG 57.563 33.333 0.00 0.00 38.49 4.24
5188 5664 9.653287 CTGTGTGATGTTTTTAGGAGTATCTAA 57.347 33.333 0.00 0.00 33.73 2.10
5189 5665 8.812972 ACTGTGTGATGTTTTTAGGAGTATCTA 58.187 33.333 0.00 0.00 33.73 1.98
5190 5666 7.680730 ACTGTGTGATGTTTTTAGGAGTATCT 58.319 34.615 0.00 0.00 33.73 1.98
5191 5667 7.907214 ACTGTGTGATGTTTTTAGGAGTATC 57.093 36.000 0.00 0.00 0.00 2.24
5192 5668 9.787435 TTAACTGTGTGATGTTTTTAGGAGTAT 57.213 29.630 0.00 0.00 0.00 2.12
5193 5669 9.048446 GTTAACTGTGTGATGTTTTTAGGAGTA 57.952 33.333 0.00 0.00 0.00 2.59
5195 5671 7.925993 TGTTAACTGTGTGATGTTTTTAGGAG 58.074 34.615 7.22 0.00 0.00 3.69
5196 5672 7.771361 TCTGTTAACTGTGTGATGTTTTTAGGA 59.229 33.333 7.22 0.00 0.00 2.94
5198 5674 9.781834 TTTCTGTTAACTGTGTGATGTTTTTAG 57.218 29.630 7.22 0.00 0.00 1.85
5200 5676 8.519526 TCTTTCTGTTAACTGTGTGATGTTTTT 58.480 29.630 7.22 0.00 0.00 1.94
5201 5677 8.050778 TCTTTCTGTTAACTGTGTGATGTTTT 57.949 30.769 7.22 0.00 0.00 2.43
5202 5678 7.624360 TCTTTCTGTTAACTGTGTGATGTTT 57.376 32.000 7.22 0.00 0.00 2.83
5203 5679 7.807977 ATCTTTCTGTTAACTGTGTGATGTT 57.192 32.000 7.22 0.00 0.00 2.71
5204 5680 7.604164 CCTATCTTTCTGTTAACTGTGTGATGT 59.396 37.037 7.22 0.00 0.00 3.06
5205 5681 7.413438 GCCTATCTTTCTGTTAACTGTGTGATG 60.413 40.741 7.22 6.86 0.00 3.07
5206 5682 6.595716 GCCTATCTTTCTGTTAACTGTGTGAT 59.404 38.462 7.22 12.40 0.00 3.06
5207 5683 5.932303 GCCTATCTTTCTGTTAACTGTGTGA 59.068 40.000 7.22 6.80 0.00 3.58
5208 5684 5.700832 TGCCTATCTTTCTGTTAACTGTGTG 59.299 40.000 7.22 1.97 0.00 3.82
5209 5685 5.865085 TGCCTATCTTTCTGTTAACTGTGT 58.135 37.500 7.22 0.00 0.00 3.72
5210 5686 6.204688 TGTTGCCTATCTTTCTGTTAACTGTG 59.795 38.462 7.22 2.61 0.00 3.66
5211 5687 6.296026 TGTTGCCTATCTTTCTGTTAACTGT 58.704 36.000 7.22 0.00 0.00 3.55
5212 5688 6.801539 TGTTGCCTATCTTTCTGTTAACTG 57.198 37.500 7.22 6.66 0.00 3.16
5213 5689 8.409358 AATTGTTGCCTATCTTTCTGTTAACT 57.591 30.769 7.22 0.00 0.00 2.24
5214 5690 9.476202 AAAATTGTTGCCTATCTTTCTGTTAAC 57.524 29.630 0.00 0.00 0.00 2.01
5216 5692 9.691362 GAAAAATTGTTGCCTATCTTTCTGTTA 57.309 29.630 0.00 0.00 0.00 2.41
5217 5693 8.203485 TGAAAAATTGTTGCCTATCTTTCTGTT 58.797 29.630 0.00 0.00 0.00 3.16
5223 5699 9.807649 GTATGATGAAAAATTGTTGCCTATCTT 57.192 29.630 0.00 0.00 0.00 2.40
5232 5708 9.260002 GTGGAAACTGTATGATGAAAAATTGTT 57.740 29.630 0.00 0.00 0.00 2.83
5240 5716 4.937620 GCAGAGTGGAAACTGTATGATGAA 59.062 41.667 0.00 0.00 36.62 2.57
5260 5736 6.902341 TGCAAGAGTATTTTAACTGAAGCAG 58.098 36.000 0.00 0.00 37.52 4.24
5262 5738 5.797434 GCTGCAAGAGTATTTTAACTGAAGC 59.203 40.000 0.00 0.00 34.07 3.86
5263 5739 7.138692 AGCTGCAAGAGTATTTTAACTGAAG 57.861 36.000 1.02 0.00 34.07 3.02
5275 5753 3.321968 TCAGAGTTGAAGCTGCAAGAGTA 59.678 43.478 7.60 0.00 34.07 2.59
5279 5757 2.492012 ACTCAGAGTTGAAGCTGCAAG 58.508 47.619 7.60 0.00 31.69 4.01
5280 5758 2.627515 ACTCAGAGTTGAAGCTGCAA 57.372 45.000 1.85 1.85 31.69 4.08
5288 5766 6.209589 ACTTGAAGCTGTATACTCAGAGTTGA 59.790 38.462 8.80 0.00 37.61 3.18
5291 5769 5.949354 AGACTTGAAGCTGTATACTCAGAGT 59.051 40.000 8.50 8.50 37.61 3.24
5292 5770 6.094742 TCAGACTTGAAGCTGTATACTCAGAG 59.905 42.308 13.52 0.00 37.61 3.35
5294 5772 6.201226 TCAGACTTGAAGCTGTATACTCAG 57.799 41.667 13.52 0.00 38.35 3.35
5330 5891 5.716228 AGTGGCTTGGATTTGATTGATGTAA 59.284 36.000 0.00 0.00 0.00 2.41
5331 5892 5.125900 CAGTGGCTTGGATTTGATTGATGTA 59.874 40.000 0.00 0.00 0.00 2.29
5332 5893 4.081862 CAGTGGCTTGGATTTGATTGATGT 60.082 41.667 0.00 0.00 0.00 3.06
5333 5894 4.430007 CAGTGGCTTGGATTTGATTGATG 58.570 43.478 0.00 0.00 0.00 3.07
5334 5895 3.118884 GCAGTGGCTTGGATTTGATTGAT 60.119 43.478 0.00 0.00 36.96 2.57
5353 5915 4.391405 ACTTGGTTCTTTTCAAAGGCAG 57.609 40.909 0.00 0.00 36.67 4.85
5360 5922 4.646945 TGGTGCATAACTTGGTTCTTTTCA 59.353 37.500 0.00 0.00 0.00 2.69
5362 5924 4.892934 TCTGGTGCATAACTTGGTTCTTTT 59.107 37.500 0.00 0.00 0.00 2.27
5364 5926 3.821033 GTCTGGTGCATAACTTGGTTCTT 59.179 43.478 0.00 0.00 0.00 2.52
5369 5931 4.579869 AGTTAGTCTGGTGCATAACTTGG 58.420 43.478 2.94 0.00 35.48 3.61
5398 5960 9.974980 TGTTCTCTATATAATAATGTGTTGCGA 57.025 29.630 0.00 0.00 0.00 5.10
5417 5979 7.987458 CCACCATACTGTATTGTAATGTTCTCT 59.013 37.037 4.43 0.00 0.00 3.10
5418 5980 7.769044 ACCACCATACTGTATTGTAATGTTCTC 59.231 37.037 4.43 0.00 0.00 2.87
5419 5981 7.630082 ACCACCATACTGTATTGTAATGTTCT 58.370 34.615 4.43 0.00 0.00 3.01
5420 5982 7.859325 ACCACCATACTGTATTGTAATGTTC 57.141 36.000 4.43 0.00 0.00 3.18
5421 5983 8.545472 ACTACCACCATACTGTATTGTAATGTT 58.455 33.333 4.43 0.00 0.00 2.71
5422 5984 8.086143 ACTACCACCATACTGTATTGTAATGT 57.914 34.615 4.43 5.61 0.00 2.71
5425 5987 8.570488 CGATACTACCACCATACTGTATTGTAA 58.430 37.037 4.43 0.00 0.00 2.41
5426 5988 7.175467 CCGATACTACCACCATACTGTATTGTA 59.825 40.741 4.43 1.68 0.00 2.41
5427 5989 6.015688 CCGATACTACCACCATACTGTATTGT 60.016 42.308 0.00 0.00 0.00 2.71
5430 5992 4.461781 GCCGATACTACCACCATACTGTAT 59.538 45.833 0.00 0.00 0.00 2.29
5444 6006 5.446860 CAGAAGGGGATATAGCCGATACTA 58.553 45.833 0.00 0.00 0.00 1.82
5451 6013 2.026729 GGAAGCAGAAGGGGATATAGCC 60.027 54.545 0.00 0.00 0.00 3.93
5453 6015 3.251484 TGGGAAGCAGAAGGGGATATAG 58.749 50.000 0.00 0.00 0.00 1.31
5468 6030 5.551305 ATTTTCCAGAAAACCTTGGGAAG 57.449 39.130 7.68 0.00 42.32 3.46
5474 6036 3.641436 AGGCGAATTTTCCAGAAAACCTT 59.359 39.130 7.68 0.21 42.32 3.50
5480 6042 3.263425 ACTCCTAGGCGAATTTTCCAGAA 59.737 43.478 5.58 0.00 0.00 3.02
5493 6055 0.802607 CGCAAGAACGACTCCTAGGC 60.803 60.000 2.96 0.00 43.02 3.93
5494 6056 0.526662 ACGCAAGAACGACTCCTAGG 59.473 55.000 0.82 0.82 43.62 3.02
5534 6096 4.124851 ACTGGTTATGGAGACGATTGAC 57.875 45.455 0.00 0.00 0.00 3.18
5615 6177 4.803452 TCCATTGAGGTTTCCTTTCACTT 58.197 39.130 0.00 0.00 39.02 3.16
5616 6178 4.453480 TCCATTGAGGTTTCCTTTCACT 57.547 40.909 0.00 0.00 39.02 3.41
5629 6191 8.037758 ACACTAGACTAGACAAATTCCATTGAG 58.962 37.037 16.55 0.00 34.38 3.02
5637 6199 9.726438 ATGCTTTTACACTAGACTAGACAAATT 57.274 29.630 16.55 0.00 0.00 1.82
5642 6204 8.648968 GTCAAATGCTTTTACACTAGACTAGAC 58.351 37.037 16.55 0.00 0.00 2.59
5643 6205 8.364894 TGTCAAATGCTTTTACACTAGACTAGA 58.635 33.333 16.55 0.00 0.00 2.43
5644 6206 8.534333 TGTCAAATGCTTTTACACTAGACTAG 57.466 34.615 8.00 8.00 0.00 2.57
5645 6207 9.502091 AATGTCAAATGCTTTTACACTAGACTA 57.498 29.630 0.00 0.00 0.00 2.59
5646 6208 7.986085 ATGTCAAATGCTTTTACACTAGACT 57.014 32.000 0.00 0.00 0.00 3.24
5666 6228 2.409870 CCCTGCCCGCAGAAATGTC 61.410 63.158 18.19 0.00 46.30 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.