Multiple sequence alignment - TraesCS5B01G023100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G023100 chr5B 100.000 4071 0 0 1 4071 21523523 21527593 0.000000e+00 7518.0
1 TraesCS5B01G023100 chr5B 93.980 980 30 11 3116 4071 21598951 21597977 0.000000e+00 1456.0
2 TraesCS5B01G023100 chr5B 92.611 785 50 5 6 785 21607575 21606794 0.000000e+00 1122.0
3 TraesCS5B01G023100 chr5B 88.197 932 39 27 784 1663 21606755 21605843 0.000000e+00 1046.0
4 TraesCS5B01G023100 chr5B 93.252 326 8 6 2007 2328 21600122 21599807 6.160000e-128 468.0
5 TraesCS5B01G023100 chr5B 96.618 207 3 1 2802 3008 21599150 21598948 1.400000e-89 340.0
6 TraesCS5B01G023100 chr5B 76.761 710 79 48 2788 3432 21413106 21413794 6.570000e-83 318.0
7 TraesCS5B01G023100 chr5B 95.000 200 9 1 1687 1886 21605680 21605482 3.060000e-81 313.0
8 TraesCS5B01G023100 chr5B 93.567 171 3 4 2487 2657 21599369 21599207 8.740000e-62 248.0
9 TraesCS5B01G023100 chr5B 97.619 42 0 1 2261 2301 21599146 21599187 2.030000e-08 71.3
10 TraesCS5B01G023100 chr5D 85.046 1411 103 50 965 2325 29132120 29133472 0.000000e+00 1338.0
11 TraesCS5B01G023100 chr5D 82.946 1290 123 50 2783 4024 29133988 29135228 0.000000e+00 1074.0
12 TraesCS5B01G023100 chr5D 84.654 984 76 32 228 1147 28946601 28947573 0.000000e+00 911.0
13 TraesCS5B01G023100 chr5D 91.440 257 18 3 2783 3039 28948363 28948615 2.330000e-92 350.0
14 TraesCS5B01G023100 chr5D 83.333 330 25 6 3033 3342 28949343 28949662 1.110000e-70 278.0
15 TraesCS5B01G023100 chr5D 86.829 205 9 6 2410 2600 29133707 29133907 3.190000e-51 213.0
16 TraesCS5B01G023100 chr5D 97.297 37 1 0 894 930 29132015 29132051 3.400000e-06 63.9
17 TraesCS5B01G023100 chr5A 85.384 1081 104 19 3 1037 19678657 19679729 0.000000e+00 1072.0
18 TraesCS5B01G023100 chr5A 81.358 869 106 29 1471 2325 19680319 19681145 0.000000e+00 656.0
19 TraesCS5B01G023100 chr5A 84.700 634 48 20 2910 3517 19913035 19913645 4.530000e-164 588.0
20 TraesCS5B01G023100 chr5A 85.814 571 33 18 2783 3324 19681696 19682247 2.750000e-156 562.0
21 TraesCS5B01G023100 chr5A 81.166 669 82 28 3383 4024 19861931 19862582 7.860000e-137 497.0
22 TraesCS5B01G023100 chr5A 84.879 496 47 16 1443 1924 19911166 19911647 3.680000e-130 475.0
23 TraesCS5B01G023100 chr5A 88.385 353 28 8 1973 2325 19911655 19911994 2.930000e-111 412.0
24 TraesCS5B01G023100 chr5A 85.132 417 36 18 965 1360 19910697 19911108 1.760000e-108 403.0
25 TraesCS5B01G023100 chr5A 84.595 383 23 12 1084 1451 19679898 19680259 8.370000e-92 348.0
26 TraesCS5B01G023100 chr5A 82.271 361 27 16 2325 2659 19681302 19681651 1.110000e-70 278.0
27 TraesCS5B01G023100 chr5A 82.836 268 36 5 2021 2287 19667775 19668033 8.800000e-57 231.0
28 TraesCS5B01G023100 chr5A 88.757 169 6 2 2414 2572 19912288 19912453 1.150000e-45 195.0
29 TraesCS5B01G023100 chr5A 95.000 40 2 0 2680 2719 19681638 19681677 3.400000e-06 63.9
30 TraesCS5B01G023100 chr7B 82.873 181 27 3 573 752 531683913 531683736 4.210000e-35 159.0
31 TraesCS5B01G023100 chr7B 87.879 99 12 0 573 671 64747578 64747480 2.570000e-22 117.0
32 TraesCS5B01G023100 chr7B 98.214 56 1 0 2734 2789 726454036 726454091 9.310000e-17 99.0
33 TraesCS5B01G023100 chr3B 80.473 169 32 1 570 737 154668121 154668289 1.190000e-25 128.0
34 TraesCS5B01G023100 chr3B 90.141 71 5 2 2734 2803 404618143 404618212 1.560000e-14 91.6
35 TraesCS5B01G023100 chr2A 77.174 184 36 6 575 755 220016359 220016179 7.200000e-18 102.0
36 TraesCS5B01G023100 chr2A 95.161 62 3 0 2734 2795 563141710 563141649 9.310000e-17 99.0
37 TraesCS5B01G023100 chr2A 82.692 104 14 4 574 676 631787707 631787807 5.600000e-14 89.8
38 TraesCS5B01G023100 chr2A 78.761 113 23 1 584 695 43452443 43452555 1.570000e-09 75.0
39 TraesCS5B01G023100 chr6B 100.000 54 0 0 2734 2787 673762979 673762926 2.590000e-17 100.0
40 TraesCS5B01G023100 chr6D 96.610 59 1 1 2734 2792 420707749 420707692 3.350000e-16 97.1
41 TraesCS5B01G023100 chr2B 93.750 64 3 1 2727 2789 519018555 519018492 1.200000e-15 95.3
42 TraesCS5B01G023100 chr2B 86.585 82 9 2 2717 2797 80628670 80628750 5.600000e-14 89.8
43 TraesCS5B01G023100 chr1B 89.474 76 6 2 2711 2785 2269765 2269839 1.200000e-15 95.3
44 TraesCS5B01G023100 chr2D 91.176 68 4 2 2718 2785 622920565 622920630 1.560000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G023100 chr5B 21523523 21527593 4070 False 7518.000 7518 100.000000 1 4071 1 chr5B.!!$F2 4070
1 TraesCS5B01G023100 chr5B 21605482 21607575 2093 True 827.000 1122 91.936000 6 1886 3 chr5B.!!$R2 1880
2 TraesCS5B01G023100 chr5B 21597977 21600122 2145 True 628.000 1456 94.354250 2007 4071 4 chr5B.!!$R1 2064
3 TraesCS5B01G023100 chr5B 21413106 21413794 688 False 318.000 318 76.761000 2788 3432 1 chr5B.!!$F1 644
4 TraesCS5B01G023100 chr5D 29132015 29135228 3213 False 672.225 1338 88.029500 894 4024 4 chr5D.!!$F2 3130
5 TraesCS5B01G023100 chr5D 28946601 28949662 3061 False 513.000 911 86.475667 228 3342 3 chr5D.!!$F1 3114
6 TraesCS5B01G023100 chr5A 19861931 19862582 651 False 497.000 497 81.166000 3383 4024 1 chr5A.!!$F2 641
7 TraesCS5B01G023100 chr5A 19678657 19682247 3590 False 496.650 1072 85.737000 3 3324 6 chr5A.!!$F3 3321
8 TraesCS5B01G023100 chr5A 19910697 19913645 2948 False 414.600 588 86.370600 965 3517 5 chr5A.!!$F4 2552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 920 0.319727 TGTTTACGTACCAGCACCGG 60.320 55.0 0.00 0.0 0.00 5.28 F
2005 2505 0.248175 ATGCGCGATAACGTACGTCA 60.248 50.0 23.05 7.8 41.98 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2781 4217 0.042731 TGGGGGTGAAGCTAGCTACT 59.957 55.0 19.7 2.33 0.0 2.57 R
3089 5291 0.251341 TGAAGGGCTGGAAAGAAGGC 60.251 55.0 0.0 0.00 39.4 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 7.504924 TTCACTCATTTCAAAATACCGAGTT 57.495 32.000 4.91 0.00 31.01 3.01
190 191 6.942886 TTCAACTCATTTCAAAACACACAC 57.057 33.333 0.00 0.00 0.00 3.82
294 301 8.240682 TCGTATCCATTTCAATAACCAAAACAG 58.759 33.333 0.00 0.00 0.00 3.16
313 321 2.543012 CAGCAGTCTCAGAACACAACAG 59.457 50.000 0.00 0.00 0.00 3.16
533 552 8.608844 AGAACATATCCAATACCGATCTTTTC 57.391 34.615 0.00 0.00 0.00 2.29
536 555 6.936900 ACATATCCAATACCGATCTTTTCCTG 59.063 38.462 0.00 0.00 0.00 3.86
548 567 2.108075 TCTTTTCCTGAAGACCATGCCA 59.892 45.455 0.00 0.00 30.98 4.92
549 568 2.905415 TTTCCTGAAGACCATGCCAT 57.095 45.000 0.00 0.00 0.00 4.40
552 571 3.281727 TCCTGAAGACCATGCCATTAC 57.718 47.619 0.00 0.00 0.00 1.89
682 703 4.483476 AAAACGAGCACCAATGTAAGTC 57.517 40.909 0.00 0.00 0.00 3.01
686 708 3.244078 ACGAGCACCAATGTAAGTCTGAA 60.244 43.478 0.00 0.00 0.00 3.02
701 723 5.606348 AGTCTGAAACTTGAACTCTGACT 57.394 39.130 5.36 5.36 41.07 3.41
734 756 3.262420 CCACTGTCTTTCTAACCATCCG 58.738 50.000 0.00 0.00 0.00 4.18
756 778 3.793559 ACCACAGGTTGATTCGCTATAC 58.206 45.455 0.00 0.00 27.29 1.47
763 785 2.787601 TGATTCGCTATACGTGGGTC 57.212 50.000 0.00 0.00 44.19 4.46
793 855 8.938883 AGATATATACAACTGATGTGGACCTTT 58.061 33.333 0.34 0.00 43.77 3.11
815 877 2.158914 AGCTGCACGATTCATGATGGTA 60.159 45.455 1.02 0.00 0.00 3.25
817 879 3.461061 CTGCACGATTCATGATGGTACT 58.539 45.455 0.00 0.00 0.00 2.73
818 880 3.197265 TGCACGATTCATGATGGTACTG 58.803 45.455 0.00 0.00 0.00 2.74
819 881 2.032549 GCACGATTCATGATGGTACTGC 60.033 50.000 0.00 0.00 0.00 4.40
820 882 3.461061 CACGATTCATGATGGTACTGCT 58.539 45.455 0.00 0.00 0.00 4.24
821 883 4.620982 CACGATTCATGATGGTACTGCTA 58.379 43.478 0.00 0.00 0.00 3.49
823 885 4.342378 ACGATTCATGATGGTACTGCTAGT 59.658 41.667 0.00 0.00 0.00 2.57
824 886 5.163405 ACGATTCATGATGGTACTGCTAGTT 60.163 40.000 0.00 0.00 0.00 2.24
827 889 5.675684 TCATGATGGTACTGCTAGTTTGA 57.324 39.130 0.00 0.00 0.00 2.69
828 890 5.419542 TCATGATGGTACTGCTAGTTTGAC 58.580 41.667 0.00 0.00 0.00 3.18
829 891 5.187772 TCATGATGGTACTGCTAGTTTGACT 59.812 40.000 0.00 0.00 0.00 3.41
831 893 4.283467 TGATGGTACTGCTAGTTTGACTGT 59.717 41.667 0.00 0.00 0.00 3.55
848 920 0.319727 TGTTTACGTACCAGCACCGG 60.320 55.000 0.00 0.00 0.00 5.28
870 943 1.916777 GAGGGAGGGACACCGGAAA 60.917 63.158 9.46 0.00 41.07 3.13
871 944 1.462627 AGGGAGGGACACCGGAAAA 60.463 57.895 9.46 0.00 41.07 2.29
966 1074 1.214589 CGAACCGTCCGTGGATTCT 59.785 57.895 0.00 0.00 0.00 2.40
1014 1143 0.901580 AGCCCATGGTTTTGCTCCTG 60.902 55.000 11.73 0.00 0.00 3.86
1091 1366 2.230660 CACCACCACCTTTCCTTCTTC 58.769 52.381 0.00 0.00 0.00 2.87
1127 1402 2.802667 CGTGCGCTGCTGGTGATAC 61.803 63.158 9.73 0.00 0.00 2.24
1128 1403 2.509111 TGCGCTGCTGGTGATACG 60.509 61.111 9.73 0.00 0.00 3.06
1129 1404 2.509336 GCGCTGCTGGTGATACGT 60.509 61.111 0.00 0.00 0.00 3.57
1130 1405 2.802667 GCGCTGCTGGTGATACGTG 61.803 63.158 0.00 0.00 0.00 4.49
1209 1498 3.706373 GCGGCCAAGACCAGAGGA 61.706 66.667 2.24 0.00 0.00 3.71
1239 1534 2.259818 CAAGCGAGGAGACGTGCT 59.740 61.111 0.00 0.00 45.61 4.40
1405 1703 2.722071 TGTTCCGCGTGTTCAAAATTC 58.278 42.857 4.92 0.00 0.00 2.17
1482 1795 7.835682 TGGATTGATGACTGAATTCTGGTTATT 59.164 33.333 15.76 0.00 0.00 1.40
1555 1900 8.805175 CATGACATTCTTCAGGACTAGAGATAT 58.195 37.037 0.00 0.00 28.33 1.63
1595 1943 1.167851 CCATCACACACACCACCATC 58.832 55.000 0.00 0.00 0.00 3.51
1621 1973 6.106673 ACGAATCTGACAATTTCTCGGTAAT 58.893 36.000 0.00 0.00 0.00 1.89
1666 2021 3.616821 CCATCTCAATTTTGCAGTGCATG 59.383 43.478 20.50 14.36 38.76 4.06
1725 2219 4.990257 TCACTAGTACGTAATTGCTGACC 58.010 43.478 0.00 0.00 0.00 4.02
1740 2234 3.181476 TGCTGACCTTTCTTTTTCTTGCC 60.181 43.478 0.00 0.00 0.00 4.52
1949 2449 5.354842 ACCTAGTACAATTTCCCTGCTAC 57.645 43.478 0.00 0.00 0.00 3.58
1951 2451 6.200114 ACCTAGTACAATTTCCCTGCTACTA 58.800 40.000 0.00 0.00 0.00 1.82
1952 2452 6.670902 ACCTAGTACAATTTCCCTGCTACTAA 59.329 38.462 0.00 0.00 0.00 2.24
1953 2453 7.347485 ACCTAGTACAATTTCCCTGCTACTAAT 59.653 37.037 0.00 0.00 0.00 1.73
1954 2454 8.211629 CCTAGTACAATTTCCCTGCTACTAATT 58.788 37.037 0.00 0.00 0.00 1.40
1955 2455 9.614792 CTAGTACAATTTCCCTGCTACTAATTT 57.385 33.333 0.00 0.00 0.00 1.82
1956 2456 8.281212 AGTACAATTTCCCTGCTACTAATTTG 57.719 34.615 0.00 0.00 0.00 2.32
1957 2457 5.965922 ACAATTTCCCTGCTACTAATTTGC 58.034 37.500 0.00 0.00 0.00 3.68
1959 2459 6.211384 ACAATTTCCCTGCTACTAATTTGCTT 59.789 34.615 0.00 0.00 0.00 3.91
1960 2460 5.643379 TTTCCCTGCTACTAATTTGCTTG 57.357 39.130 0.00 0.00 0.00 4.01
1964 2464 3.428045 CCTGCTACTAATTTGCTTGCCAC 60.428 47.826 0.00 0.00 0.00 5.01
1965 2465 2.161410 TGCTACTAATTTGCTTGCCACG 59.839 45.455 0.00 0.00 0.00 4.94
1968 2468 4.438744 GCTACTAATTTGCTTGCCACGATT 60.439 41.667 0.00 0.00 0.00 3.34
1974 2474 1.242665 TGCTTGCCACGATTGCATGA 61.243 50.000 0.00 0.00 38.76 3.07
1977 2477 0.522626 TTGCCACGATTGCATGAGTG 59.477 50.000 0.00 8.44 38.76 3.51
2000 2500 3.843153 GCAAATGAATGCGCGATAACGTA 60.843 43.478 12.10 0.00 37.97 3.57
2001 2501 3.499072 AATGAATGCGCGATAACGTAC 57.501 42.857 12.10 0.00 41.98 3.67
2002 2502 0.841356 TGAATGCGCGATAACGTACG 59.159 50.000 12.10 15.01 41.98 3.67
2003 2503 0.841984 GAATGCGCGATAACGTACGT 59.158 50.000 16.72 16.72 41.98 3.57
2004 2504 0.841984 AATGCGCGATAACGTACGTC 59.158 50.000 23.05 8.51 41.98 4.34
2005 2505 0.248175 ATGCGCGATAACGTACGTCA 60.248 50.000 23.05 7.80 41.98 4.35
2188 2688 2.667470 CCCCTTACTCCATCGAAGAGA 58.333 52.381 19.46 2.96 43.63 3.10
2209 2709 2.736347 ACCGAGATTGCACCTACTACT 58.264 47.619 0.00 0.00 0.00 2.57
2343 3069 6.917217 AGCTAGTAGTTCTGAATGAAATGC 57.083 37.500 0.00 0.00 36.30 3.56
2355 3081 7.549839 TCTGAATGAAATGCCCTTTATGAAAG 58.450 34.615 0.00 0.00 38.24 2.62
2360 3086 9.743581 AATGAAATGCCCTTTATGAAAGAAAAT 57.256 25.926 0.47 0.00 41.02 1.82
2362 3088 9.874205 TGAAATGCCCTTTATGAAAGAAAATAG 57.126 29.630 0.47 0.00 41.02 1.73
2437 3266 6.843069 ATTTTGCACCATCAAAAACAGTAC 57.157 33.333 5.87 0.00 45.50 2.73
2438 3267 5.590530 TTTGCACCATCAAAAACAGTACT 57.409 34.783 0.00 0.00 33.47 2.73
2439 3268 6.701145 TTTGCACCATCAAAAACAGTACTA 57.299 33.333 0.00 0.00 33.47 1.82
2599 4014 1.577421 CACACGGTTTTAAGCCCCG 59.423 57.895 7.69 7.69 46.93 5.73
2601 4016 2.674033 ACGGTTTTAAGCCCCGGC 60.674 61.111 0.00 0.00 45.85 6.13
2602 4017 3.445687 CGGTTTTAAGCCCCGGCC 61.446 66.667 1.02 0.00 43.17 6.13
2603 4018 3.072468 GGTTTTAAGCCCCGGCCC 61.072 66.667 1.02 0.00 43.17 5.80
2604 4019 3.072468 GTTTTAAGCCCCGGCCCC 61.072 66.667 1.02 0.00 43.17 5.80
2605 4020 3.591608 TTTTAAGCCCCGGCCCCA 61.592 61.111 1.02 0.00 43.17 4.96
2627 4042 1.092348 GGTTTTAGAAGCGCGGGATT 58.908 50.000 8.83 1.35 0.00 3.01
2646 4078 2.631160 TGTCGAAACCACTTGGACAT 57.369 45.000 1.14 0.00 44.84 3.06
2647 4079 3.755112 TGTCGAAACCACTTGGACATA 57.245 42.857 1.14 0.00 44.84 2.29
2648 4080 4.074627 TGTCGAAACCACTTGGACATAA 57.925 40.909 1.14 0.00 44.84 1.90
2649 4081 4.452825 TGTCGAAACCACTTGGACATAAA 58.547 39.130 1.14 0.00 44.84 1.40
2650 4082 4.273969 TGTCGAAACCACTTGGACATAAAC 59.726 41.667 1.14 0.00 44.84 2.01
2651 4083 3.816523 TCGAAACCACTTGGACATAAACC 59.183 43.478 1.14 0.00 38.94 3.27
2652 4084 3.566322 CGAAACCACTTGGACATAAACCA 59.434 43.478 1.14 0.00 38.94 3.67
2653 4085 4.217550 CGAAACCACTTGGACATAAACCAT 59.782 41.667 1.14 0.00 37.26 3.55
2654 4086 5.467035 AAACCACTTGGACATAAACCATG 57.533 39.130 1.14 0.00 38.48 3.66
2664 4096 3.275999 ACATAAACCATGTTCTACCCGC 58.724 45.455 0.00 0.00 46.01 6.13
2665 4097 3.275143 CATAAACCATGTTCTACCCGCA 58.725 45.455 0.00 0.00 0.00 5.69
2666 4098 2.279935 AAACCATGTTCTACCCGCAA 57.720 45.000 0.00 0.00 0.00 4.85
2667 4099 2.279935 AACCATGTTCTACCCGCAAA 57.720 45.000 0.00 0.00 0.00 3.68
2668 4100 2.279935 ACCATGTTCTACCCGCAAAA 57.720 45.000 0.00 0.00 0.00 2.44
2669 4101 2.588620 ACCATGTTCTACCCGCAAAAA 58.411 42.857 0.00 0.00 0.00 1.94
2719 4155 2.100916 ACACTAGCCGTCCATGATGTAC 59.899 50.000 0.00 0.00 0.00 2.90
2720 4156 2.362397 CACTAGCCGTCCATGATGTACT 59.638 50.000 0.00 0.00 0.00 2.73
2723 4159 1.139058 AGCCGTCCATGATGTACTTCC 59.861 52.381 6.32 0.00 0.00 3.46
2726 4162 3.458189 CCGTCCATGATGTACTTCCTTC 58.542 50.000 6.32 0.00 0.00 3.46
2727 4163 3.118775 CCGTCCATGATGTACTTCCTTCA 60.119 47.826 6.32 0.00 0.00 3.02
2729 4165 4.747108 CGTCCATGATGTACTTCCTTCATC 59.253 45.833 6.32 0.00 38.57 2.92
2730 4166 5.059833 GTCCATGATGTACTTCCTTCATCC 58.940 45.833 6.32 0.00 37.67 3.51
2731 4167 4.060900 CCATGATGTACTTCCTTCATCCG 58.939 47.826 6.32 0.00 37.67 4.18
2735 4171 4.098960 TGATGTACTTCCTTCATCCGGTAC 59.901 45.833 0.00 0.00 37.67 3.34
2736 4172 3.433343 TGTACTTCCTTCATCCGGTACA 58.567 45.455 0.00 0.00 37.67 2.90
2738 4174 3.821421 ACTTCCTTCATCCGGTACATC 57.179 47.619 0.00 0.00 0.00 3.06
2739 4175 2.434702 ACTTCCTTCATCCGGTACATCC 59.565 50.000 0.00 0.00 0.00 3.51
2740 4176 1.420430 TCCTTCATCCGGTACATCCC 58.580 55.000 0.00 0.00 0.00 3.85
2741 4177 0.396811 CCTTCATCCGGTACATCCCC 59.603 60.000 0.00 0.00 0.00 4.81
2744 4180 1.887797 TCATCCGGTACATCCCCTTT 58.112 50.000 0.00 0.00 0.00 3.11
2746 4182 3.386063 TCATCCGGTACATCCCCTTTTA 58.614 45.455 0.00 0.00 0.00 1.52
2747 4183 3.977999 TCATCCGGTACATCCCCTTTTAT 59.022 43.478 0.00 0.00 0.00 1.40
2748 4184 4.041198 TCATCCGGTACATCCCCTTTTATC 59.959 45.833 0.00 0.00 0.00 1.75
2749 4185 2.707257 TCCGGTACATCCCCTTTTATCC 59.293 50.000 0.00 0.00 0.00 2.59
2750 4186 2.440253 CCGGTACATCCCCTTTTATCCA 59.560 50.000 0.00 0.00 0.00 3.41
2751 4187 3.073946 CCGGTACATCCCCTTTTATCCAT 59.926 47.826 0.00 0.00 0.00 3.41
2752 4188 4.447180 CCGGTACATCCCCTTTTATCCATT 60.447 45.833 0.00 0.00 0.00 3.16
2753 4189 5.137551 CGGTACATCCCCTTTTATCCATTT 58.862 41.667 0.00 0.00 0.00 2.32
2754 4190 5.596772 CGGTACATCCCCTTTTATCCATTTT 59.403 40.000 0.00 0.00 0.00 1.82
2755 4191 6.460953 CGGTACATCCCCTTTTATCCATTTTG 60.461 42.308 0.00 0.00 0.00 2.44
2756 4192 6.609616 GGTACATCCCCTTTTATCCATTTTGA 59.390 38.462 0.00 0.00 0.00 2.69
2757 4193 7.290014 GGTACATCCCCTTTTATCCATTTTGAT 59.710 37.037 0.00 0.00 0.00 2.57
2758 4194 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
2759 4195 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
2760 4196 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
2761 4197 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
2762 4198 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
2763 4199 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
2764 4200 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
2765 4201 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
2771 4207 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
2772 4208 6.657117 TCCATTTTGATGACAAGTATTTCCGA 59.343 34.615 0.00 0.00 37.32 4.55
2773 4209 7.175816 TCCATTTTGATGACAAGTATTTCCGAA 59.824 33.333 0.00 0.00 37.32 4.30
2774 4210 7.273381 CCATTTTGATGACAAGTATTTCCGAAC 59.727 37.037 0.00 0.00 37.32 3.95
2775 4211 5.524511 TTGATGACAAGTATTTCCGAACG 57.475 39.130 0.00 0.00 0.00 3.95
2776 4212 3.930229 TGATGACAAGTATTTCCGAACGG 59.070 43.478 6.94 6.94 0.00 4.44
2777 4213 3.663995 TGACAAGTATTTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
2778 4214 3.581755 TGACAAGTATTTCCGAACGGAG 58.418 45.455 15.34 5.60 46.06 4.63
2779 4215 2.928116 GACAAGTATTTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2780 4216 2.277084 CAAGTATTTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2781 4217 1.856629 AGTATTTCCGAACGGAGGGA 58.143 50.000 15.34 7.17 46.06 4.20
3016 4472 0.107945 AAGAGGTTGAGATGCCGAGC 60.108 55.000 0.00 0.00 0.00 5.03
3134 5353 2.151502 TGAGCAACTCAAACCCCAAA 57.848 45.000 0.00 0.00 37.57 3.28
3138 5357 3.242011 AGCAACTCAAACCCCAAATCAT 58.758 40.909 0.00 0.00 0.00 2.45
3139 5358 3.007182 AGCAACTCAAACCCCAAATCATG 59.993 43.478 0.00 0.00 0.00 3.07
3167 5389 2.442212 TGTCAGAATCGTTTGCCGTA 57.558 45.000 0.00 0.00 37.94 4.02
3284 5525 1.995646 TTGCAGCAGCTGTGTGTGTG 61.996 55.000 23.60 4.94 42.74 3.82
3285 5526 2.330393 CAGCAGCTGTGTGTGTGC 59.670 61.111 16.64 0.00 36.10 4.57
3307 5556 2.087646 GACCTTGTCCAGATCCTTTGC 58.912 52.381 0.00 0.00 0.00 3.68
3334 5584 8.095937 GATCTTTGTCAATGCATAGATCATCA 57.904 34.615 21.87 5.63 45.14 3.07
3577 5829 8.576442 TCTTGGACTACTTGGATTTTCAATTTC 58.424 33.333 0.00 0.00 0.00 2.17
3647 5899 5.305386 CCACATATCTCATGGACTACTTGGA 59.695 44.000 0.00 0.00 35.33 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 191 7.900782 AATTCAGCCTTTTGAAATCATTGAG 57.099 32.000 0.00 0.00 40.21 3.02
294 301 2.555199 ACTGTTGTGTTCTGAGACTGC 58.445 47.619 0.00 0.00 0.00 4.40
340 348 9.188588 GCATATTCAGTTTCACATATGAATTGG 57.811 33.333 10.38 0.48 44.36 3.16
478 492 5.641209 TGTTTAAATTTTGATGCCCCAATCG 59.359 36.000 0.00 0.00 0.00 3.34
533 552 3.003394 TGTAATGGCATGGTCTTCAGG 57.997 47.619 0.00 0.00 0.00 3.86
536 555 5.964758 TCAAAATGTAATGGCATGGTCTTC 58.035 37.500 0.00 0.00 0.00 2.87
548 567 7.330946 TCGACTTCGTCAATCTCAAAATGTAAT 59.669 33.333 0.00 0.00 40.80 1.89
549 568 6.643360 TCGACTTCGTCAATCTCAAAATGTAA 59.357 34.615 0.00 0.00 40.80 2.41
552 571 5.515548 TCGACTTCGTCAATCTCAAAATG 57.484 39.130 0.00 0.00 40.80 2.32
611 630 0.397941 TGTGCTTTCAGTGAGAGGGG 59.602 55.000 12.28 0.00 0.00 4.79
635 654 1.006639 GGGTTTATTCCAGGCCTTCCA 59.993 52.381 0.00 0.00 33.74 3.53
682 703 5.111989 TGTCAGTCAGAGTTCAAGTTTCAG 58.888 41.667 0.00 0.00 0.00 3.02
686 708 4.437239 CACTGTCAGTCAGAGTTCAAGTT 58.563 43.478 1.37 0.00 46.27 2.66
718 740 3.259902 GTGGTCGGATGGTTAGAAAGAC 58.740 50.000 0.00 0.00 0.00 3.01
734 756 2.380084 TAGCGAATCAACCTGTGGTC 57.620 50.000 0.00 0.00 33.12 4.02
763 785 9.343103 GTCCACATCAGTTGTATATATCTAACG 57.657 37.037 0.00 0.00 36.57 3.18
770 792 8.148351 GCTAAAGGTCCACATCAGTTGTATATA 58.852 37.037 0.00 0.00 36.57 0.86
793 855 2.158914 ACCATCATGAATCGTGCAGCTA 60.159 45.455 0.00 0.00 0.00 3.32
815 877 4.690122 ACGTAAACAGTCAAACTAGCAGT 58.310 39.130 0.00 0.00 0.00 4.40
817 879 4.984161 GGTACGTAAACAGTCAAACTAGCA 59.016 41.667 0.00 0.00 0.00 3.49
818 880 4.984161 TGGTACGTAAACAGTCAAACTAGC 59.016 41.667 0.00 0.00 0.00 3.42
819 881 5.118203 GCTGGTACGTAAACAGTCAAACTAG 59.882 44.000 22.23 8.13 34.79 2.57
820 882 4.984161 GCTGGTACGTAAACAGTCAAACTA 59.016 41.667 22.23 0.00 34.79 2.24
821 883 3.805971 GCTGGTACGTAAACAGTCAAACT 59.194 43.478 22.23 0.00 34.79 2.66
823 885 3.556775 GTGCTGGTACGTAAACAGTCAAA 59.443 43.478 22.23 9.35 34.79 2.69
824 886 3.125316 GTGCTGGTACGTAAACAGTCAA 58.875 45.455 22.23 11.11 34.79 3.18
827 889 1.603678 CGGTGCTGGTACGTAAACAGT 60.604 52.381 22.23 0.00 34.79 3.55
828 890 1.065358 CGGTGCTGGTACGTAAACAG 58.935 55.000 19.05 19.05 35.40 3.16
829 891 0.319727 CCGGTGCTGGTACGTAAACA 60.320 55.000 0.00 0.00 0.00 2.83
831 893 0.392336 AACCGGTGCTGGTACGTAAA 59.608 50.000 8.52 0.00 42.89 2.01
848 920 1.003718 CGGTGTCCCTCCCTCAAAC 60.004 63.158 0.00 0.00 0.00 2.93
870 943 5.241949 CGTACTAGGAGTAGCATGGAGAATT 59.758 44.000 0.00 0.00 30.12 2.17
871 944 4.762765 CGTACTAGGAGTAGCATGGAGAAT 59.237 45.833 0.00 0.00 30.12 2.40
1014 1143 2.357517 CGACTGTGCAGGTGGGAC 60.358 66.667 4.11 0.00 38.51 4.46
1091 1366 1.222113 GCCTCGGAAGGAAGGAAGG 59.778 63.158 0.00 0.00 46.67 3.46
1375 1670 2.514824 GCGGAACATGGAGGAGCC 60.515 66.667 0.00 0.00 37.10 4.70
1405 1703 1.314534 TGCGGATCCACAGCATTTGG 61.315 55.000 13.41 0.00 43.90 3.28
1534 1879 6.585702 CGCAATATCTCTAGTCCTGAAGAATG 59.414 42.308 0.00 0.00 0.00 2.67
1595 1943 5.103000 ACCGAGAAATTGTCAGATTCGTAG 58.897 41.667 0.00 0.00 0.00 3.51
1645 2000 4.840401 CATGCACTGCAAAATTGAGATG 57.160 40.909 8.03 0.00 43.62 2.90
1672 2027 6.804770 TTACATACTAGTCAGCTAGCTAGC 57.195 41.667 33.96 33.96 46.56 3.42
1674 2029 9.967346 CATTTTTACATACTAGTCAGCTAGCTA 57.033 33.333 18.86 0.00 46.56 3.32
1716 2210 5.052481 GCAAGAAAAAGAAAGGTCAGCAAT 58.948 37.500 0.00 0.00 0.00 3.56
1725 2219 5.894807 TGTGAAGAGGCAAGAAAAAGAAAG 58.105 37.500 0.00 0.00 0.00 2.62
1740 2234 4.829968 ACAAGATGACCATCTGTGAAGAG 58.170 43.478 12.73 1.93 46.75 2.85
1867 2361 1.375140 CGGCTGGATCATCGGGATG 60.375 63.158 2.21 2.21 36.00 3.51
1922 2422 5.104652 GCAGGGAAATTGTACTAGGTAGGAA 60.105 44.000 0.00 0.00 0.00 3.36
1949 2449 2.599973 GCAATCGTGGCAAGCAAATTAG 59.400 45.455 0.00 0.00 0.00 1.73
1951 2451 1.270199 TGCAATCGTGGCAAGCAAATT 60.270 42.857 0.00 0.00 38.54 1.82
1952 2452 0.317799 TGCAATCGTGGCAAGCAAAT 59.682 45.000 0.00 0.00 38.54 2.32
1953 2453 0.317799 ATGCAATCGTGGCAAGCAAA 59.682 45.000 0.00 0.00 45.60 3.68
1954 2454 0.388778 CATGCAATCGTGGCAAGCAA 60.389 50.000 0.00 0.00 45.60 3.91
1955 2455 1.213275 CATGCAATCGTGGCAAGCA 59.787 52.632 0.00 0.00 45.60 3.91
1956 2456 0.524816 CTCATGCAATCGTGGCAAGC 60.525 55.000 0.00 0.00 45.60 4.01
1957 2457 0.806868 ACTCATGCAATCGTGGCAAG 59.193 50.000 0.00 0.00 45.60 4.01
1959 2459 1.307355 CCACTCATGCAATCGTGGCA 61.307 55.000 15.71 0.00 46.66 4.92
1960 2460 1.430632 CCACTCATGCAATCGTGGC 59.569 57.895 15.71 0.00 37.89 5.01
1968 2468 2.675603 GCATTCATTTGCCACTCATGCA 60.676 45.455 0.00 0.00 36.41 3.96
1974 2474 1.153978 CGCGCATTCATTTGCCACT 60.154 52.632 8.75 0.00 39.52 4.00
1977 2477 1.780860 GTTATCGCGCATTCATTTGCC 59.219 47.619 8.75 0.00 39.52 4.52
1992 2492 2.159338 TCAAGCCCTGACGTACGTTATC 60.159 50.000 23.70 10.56 0.00 1.75
2000 2500 0.250901 AAGCAATCAAGCCCTGACGT 60.251 50.000 0.00 0.00 36.69 4.34
2001 2501 0.883833 AAAGCAATCAAGCCCTGACG 59.116 50.000 0.00 0.00 36.69 4.35
2002 2502 2.680577 CAAAAGCAATCAAGCCCTGAC 58.319 47.619 0.00 0.00 36.69 3.51
2003 2503 1.001181 GCAAAAGCAATCAAGCCCTGA 59.999 47.619 0.00 0.00 38.81 3.86
2004 2504 1.001633 AGCAAAAGCAATCAAGCCCTG 59.998 47.619 0.00 0.00 34.23 4.45
2005 2505 1.345063 AGCAAAAGCAATCAAGCCCT 58.655 45.000 0.00 0.00 34.23 5.19
2188 2688 3.097614 AGTAGTAGGTGCAATCTCGGTT 58.902 45.455 0.00 0.00 0.00 4.44
2209 2709 1.411216 GGAGGAGTAGGGAACATCCGA 60.411 57.143 0.00 0.00 37.43 4.55
2355 3081 9.875675 CATGCTAATTCAGAACTAGCTATTTTC 57.124 33.333 21.21 0.33 39.06 2.29
2360 3086 5.917462 TGCATGCTAATTCAGAACTAGCTA 58.083 37.500 21.21 10.51 39.06 3.32
2361 3087 4.774124 TGCATGCTAATTCAGAACTAGCT 58.226 39.130 21.21 7.29 39.06 3.32
2362 3088 5.450171 CATGCATGCTAATTCAGAACTAGC 58.550 41.667 20.33 15.40 38.82 3.42
2437 3266 1.198637 GCTGCTCACAAGGCAAACTAG 59.801 52.381 0.00 0.00 39.30 2.57
2438 3267 1.238439 GCTGCTCACAAGGCAAACTA 58.762 50.000 0.00 0.00 39.30 2.24
2439 3268 1.458639 GGCTGCTCACAAGGCAAACT 61.459 55.000 0.00 0.00 39.30 2.66
2466 3296 2.420722 GTCTAACAGACCTCTCTCCACG 59.579 54.545 0.00 0.00 39.28 4.94
2602 4017 0.455815 GCGCTTCTAAAACCCATGGG 59.544 55.000 30.23 30.23 42.03 4.00
2603 4018 0.098728 CGCGCTTCTAAAACCCATGG 59.901 55.000 4.14 4.14 0.00 3.66
2604 4019 0.098728 CCGCGCTTCTAAAACCCATG 59.901 55.000 5.56 0.00 0.00 3.66
2605 4020 1.029947 CCCGCGCTTCTAAAACCCAT 61.030 55.000 5.56 0.00 0.00 4.00
2627 4042 2.631160 ATGTCCAAGTGGTTTCGACA 57.369 45.000 0.00 0.00 37.81 4.35
2645 4077 3.637911 TGCGGGTAGAACATGGTTTAT 57.362 42.857 0.00 0.00 0.00 1.40
2646 4078 3.420300 TTGCGGGTAGAACATGGTTTA 57.580 42.857 0.00 0.00 0.00 2.01
2647 4079 2.279935 TTGCGGGTAGAACATGGTTT 57.720 45.000 0.00 0.00 0.00 3.27
2648 4080 2.279935 TTTGCGGGTAGAACATGGTT 57.720 45.000 0.00 0.00 0.00 3.67
2649 4081 2.279935 TTTTGCGGGTAGAACATGGT 57.720 45.000 0.00 0.00 0.00 3.55
2673 4105 9.474920 GTCATTCAGAACATGGTTTATTTTTGA 57.525 29.630 0.00 0.00 0.00 2.69
2674 4106 9.258826 TGTCATTCAGAACATGGTTTATTTTTG 57.741 29.630 0.00 0.00 0.00 2.44
2675 4107 9.260002 GTGTCATTCAGAACATGGTTTATTTTT 57.740 29.630 0.00 0.00 0.00 1.94
2676 4108 8.641541 AGTGTCATTCAGAACATGGTTTATTTT 58.358 29.630 0.00 0.00 0.00 1.82
2677 4109 8.181904 AGTGTCATTCAGAACATGGTTTATTT 57.818 30.769 0.00 0.00 0.00 1.40
2678 4110 7.765695 AGTGTCATTCAGAACATGGTTTATT 57.234 32.000 0.00 0.00 0.00 1.40
2719 4155 2.224305 GGGATGTACCGGATGAAGGAAG 60.224 54.545 9.46 0.00 40.11 3.46
2720 4156 1.766496 GGGATGTACCGGATGAAGGAA 59.234 52.381 9.46 0.00 40.11 3.36
2723 4159 1.424638 AGGGGATGTACCGGATGAAG 58.575 55.000 9.46 0.00 40.11 3.02
2726 4162 2.729028 AAAAGGGGATGTACCGGATG 57.271 50.000 9.46 0.00 40.11 3.51
2727 4163 3.329814 GGATAAAAGGGGATGTACCGGAT 59.670 47.826 9.46 0.00 40.11 4.18
2729 4165 2.440253 TGGATAAAAGGGGATGTACCGG 59.560 50.000 0.00 0.00 40.11 5.28
2730 4166 3.849563 TGGATAAAAGGGGATGTACCG 57.150 47.619 0.00 0.00 40.11 4.02
2731 4167 6.609616 TCAAAATGGATAAAAGGGGATGTACC 59.390 38.462 0.00 0.00 38.08 3.34
2735 4171 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
2736 4172 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
2738 4174 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
2739 4175 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
2746 4182 7.339212 TCGGAAATACTTGTCATCAAAATGGAT 59.661 33.333 0.00 0.00 33.42 3.41
2747 4183 6.657117 TCGGAAATACTTGTCATCAAAATGGA 59.343 34.615 0.00 0.00 33.42 3.41
2748 4184 6.851609 TCGGAAATACTTGTCATCAAAATGG 58.148 36.000 0.00 0.00 33.42 3.16
2749 4185 7.007367 CGTTCGGAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2750 4186 7.021196 CGTTCGGAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2751 4187 6.367421 CGTTCGGAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2752 4188 5.106869 CCGTTCGGAAATACTTGTCATCAAA 60.107 40.000 5.19 0.00 32.87 2.69
2753 4189 4.390603 CCGTTCGGAAATACTTGTCATCAA 59.609 41.667 5.19 0.00 0.00 2.57
2754 4190 3.930229 CCGTTCGGAAATACTTGTCATCA 59.070 43.478 5.19 0.00 0.00 3.07
2755 4191 4.178540 TCCGTTCGGAAATACTTGTCATC 58.821 43.478 11.66 0.00 0.00 2.92
2756 4192 4.181578 CTCCGTTCGGAAATACTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
2757 4193 3.581755 CTCCGTTCGGAAATACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
2758 4194 2.928116 CCTCCGTTCGGAAATACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2759 4195 2.354403 CCCTCCGTTCGGAAATACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2760 4196 2.093869 TCCCTCCGTTCGGAAATACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2761 4197 2.167900 CTCCCTCCGTTCGGAAATACTT 59.832 50.000 14.79 0.00 33.41 2.24
2762 4198 1.755380 CTCCCTCCGTTCGGAAATACT 59.245 52.381 14.79 0.00 33.41 2.12
2763 4199 1.479730 ACTCCCTCCGTTCGGAAATAC 59.520 52.381 14.79 0.00 33.41 1.89
2764 4200 1.856629 ACTCCCTCCGTTCGGAAATA 58.143 50.000 14.79 2.82 33.41 1.40
2765 4201 1.755380 CTACTCCCTCCGTTCGGAAAT 59.245 52.381 14.79 2.39 33.41 2.17
2766 4202 1.180029 CTACTCCCTCCGTTCGGAAA 58.820 55.000 14.79 3.49 33.41 3.13
2767 4203 1.318158 GCTACTCCCTCCGTTCGGAA 61.318 60.000 14.79 0.04 33.41 4.30
2768 4204 1.751927 GCTACTCCCTCCGTTCGGA 60.752 63.158 13.34 13.34 0.00 4.55
2769 4205 0.465097 TAGCTACTCCCTCCGTTCGG 60.465 60.000 4.74 4.74 0.00 4.30
2770 4206 0.945813 CTAGCTACTCCCTCCGTTCG 59.054 60.000 0.00 0.00 0.00 3.95
2771 4207 0.669619 GCTAGCTACTCCCTCCGTTC 59.330 60.000 7.70 0.00 0.00 3.95
2772 4208 0.259356 AGCTAGCTACTCCCTCCGTT 59.741 55.000 17.69 0.00 0.00 4.44
2773 4209 0.259356 AAGCTAGCTACTCCCTCCGT 59.741 55.000 19.70 0.00 0.00 4.69
2774 4210 0.955905 GAAGCTAGCTACTCCCTCCG 59.044 60.000 19.70 0.00 0.00 4.63
2775 4211 1.684450 GTGAAGCTAGCTACTCCCTCC 59.316 57.143 19.70 1.52 0.00 4.30
2776 4212 1.684450 GGTGAAGCTAGCTACTCCCTC 59.316 57.143 19.70 11.31 0.00 4.30
2777 4213 1.689892 GGGTGAAGCTAGCTACTCCCT 60.690 57.143 28.68 12.52 0.00 4.20
2778 4214 0.753867 GGGTGAAGCTAGCTACTCCC 59.246 60.000 25.02 25.02 0.00 4.30
2779 4215 0.753867 GGGGTGAAGCTAGCTACTCC 59.246 60.000 18.71 18.71 0.00 3.85
2780 4216 0.753867 GGGGGTGAAGCTAGCTACTC 59.246 60.000 19.70 13.54 0.00 2.59
2781 4217 0.042731 TGGGGGTGAAGCTAGCTACT 59.957 55.000 19.70 2.33 0.00 2.57
3016 4472 0.926155 CGGTGCACATCTTCAGATCG 59.074 55.000 20.43 4.75 31.21 3.69
3085 5275 2.034221 GCTGGAAAGAAGGCCGGT 59.966 61.111 1.90 0.00 32.98 5.28
3089 5291 0.251341 TGAAGGGCTGGAAAGAAGGC 60.251 55.000 0.00 0.00 39.40 4.35
3091 5293 1.160137 CGTGAAGGGCTGGAAAGAAG 58.840 55.000 0.00 0.00 0.00 2.85
3134 5353 5.179555 CGATTCTGACATCATCTTGCATGAT 59.820 40.000 9.20 9.20 39.16 2.45
3138 5357 3.865446 ACGATTCTGACATCATCTTGCA 58.135 40.909 0.00 0.00 0.00 4.08
3139 5358 4.871993 AACGATTCTGACATCATCTTGC 57.128 40.909 0.00 0.00 0.00 4.01
3167 5389 5.558818 AGCTAGCTTTGCTGCTATATTCAT 58.441 37.500 12.68 0.00 43.54 2.57
3307 5556 7.492352 TGATCTATGCATTGACAAAGATCAG 57.508 36.000 24.14 6.06 42.52 2.90
3334 5584 8.718656 AGAGGCCAAGTAGAAGTGAAATATATT 58.281 33.333 5.01 0.00 0.00 1.28
3527 5779 7.671398 AGAGATATGTGGAAACAGTTGGAAAAT 59.329 33.333 0.00 0.00 44.46 1.82
3613 5865 6.992123 TCCATGAGATATGTGGAAACATGTAC 59.008 38.462 0.00 0.00 46.14 2.90
3977 6253 8.674263 TTTCAGAAACTACGGGTACATTTTTA 57.326 30.769 0.00 0.00 0.00 1.52
3985 6261 5.337009 GGACATCTTTCAGAAACTACGGGTA 60.337 44.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.