Multiple sequence alignment - TraesCS5B01G022700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G022700 chr5B 100.000 3557 0 0 1 3557 21151281 21154837 0.000000e+00 6569.0
1 TraesCS5B01G022700 chr5B 77.455 275 32 16 1567 1814 21152712 21152983 1.720000e-28 137.0
2 TraesCS5B01G022700 chr5B 77.455 275 32 16 1432 1703 21152847 21153094 1.720000e-28 137.0
3 TraesCS5B01G022700 chr5B 91.176 68 4 2 539 605 427250294 427250228 1.360000e-14 91.6
4 TraesCS5B01G022700 chr5D 93.012 2032 75 31 652 2649 28638833 28640831 0.000000e+00 2904.0
5 TraesCS5B01G022700 chr5D 89.895 287 18 4 3159 3435 28643178 28643463 3.380000e-95 359.0
6 TraesCS5B01G022700 chr5D 88.333 180 7 7 2852 3022 28641202 28641376 1.670000e-48 204.0
7 TraesCS5B01G022700 chr5D 93.000 100 4 1 2617 2713 28640948 28641047 3.700000e-30 143.0
8 TraesCS5B01G022700 chr5D 92.784 97 6 1 1608 1703 28639899 28639995 4.790000e-29 139.0
9 TraesCS5B01G022700 chr5D 93.182 88 6 0 1727 1814 28639797 28639884 2.880000e-26 130.0
10 TraesCS5B01G022700 chr5D 100.000 36 0 0 2588 2623 28640836 28640871 2.290000e-07 67.6
11 TraesCS5B01G022700 chr5A 90.110 910 49 17 806 1693 19253630 19254520 0.000000e+00 1144.0
12 TraesCS5B01G022700 chr5A 91.299 793 44 11 1888 2660 19255076 19255863 0.000000e+00 1059.0
13 TraesCS5B01G022700 chr5A 87.731 432 27 12 109 540 620389503 620389098 6.910000e-132 481.0
14 TraesCS5B01G022700 chr5A 86.638 232 22 6 2589 2813 19255859 19256088 7.630000e-62 248.0
15 TraesCS5B01G022700 chr5A 94.595 111 6 0 1 111 620389774 620389664 4.720000e-39 172.0
16 TraesCS5B01G022700 chr5A 94.505 91 4 1 649 739 19245212 19245301 4.790000e-29 139.0
17 TraesCS5B01G022700 chr5A 88.073 109 11 2 1697 1804 19254413 19254520 1.040000e-25 128.0
18 TraesCS5B01G022700 chr5A 86.486 74 6 3 676 745 19244924 19244997 1.060000e-10 78.7
19 TraesCS5B01G022700 chr4D 90.370 540 34 8 1 540 423884017 423884538 0.000000e+00 693.0
20 TraesCS5B01G022700 chr4D 96.591 88 1 1 2725 2812 99662492 99662407 1.030000e-30 145.0
21 TraesCS5B01G022700 chr7D 89.253 549 39 11 1 540 590128879 590128342 0.000000e+00 669.0
22 TraesCS5B01G022700 chr7D 90.000 70 4 3 539 607 16314596 16314663 1.760000e-13 87.9
23 TraesCS5B01G022700 chr1A 89.259 540 32 11 1 540 337983945 337983432 0.000000e+00 652.0
24 TraesCS5B01G022700 chr1A 83.492 315 32 12 206 518 9966995 9967291 3.500000e-70 276.0
25 TraesCS5B01G022700 chr1A 91.089 101 6 2 2714 2814 518662856 518662759 2.230000e-27 134.0
26 TraesCS5B01G022700 chr3D 90.260 462 29 9 72 533 573739155 573739600 1.100000e-164 590.0
27 TraesCS5B01G022700 chr1B 84.444 540 70 8 1 540 660005661 660005136 1.460000e-143 520.0
28 TraesCS5B01G022700 chr6D 88.626 422 25 10 126 546 445410490 445410889 3.190000e-135 492.0
29 TraesCS5B01G022700 chr6D 90.551 127 12 0 1 127 445402614 445402740 6.110000e-38 169.0
30 TraesCS5B01G022700 chr7A 79.279 555 68 22 1 537 148176261 148176786 9.450000e-91 344.0
31 TraesCS5B01G022700 chr7A 92.308 65 3 2 541 604 1297127 1297190 1.360000e-14 91.6
32 TraesCS5B01G022700 chr6B 86.047 258 18 6 1 258 672156607 672156846 9.790000e-66 261.0
33 TraesCS5B01G022700 chr6B 81.522 276 22 13 269 540 672156980 672157230 2.170000e-47 200.0
34 TraesCS5B01G022700 chr6B 97.647 85 2 0 2728 2812 642350320 642350236 2.860000e-31 147.0
35 TraesCS5B01G022700 chr6B 94.505 91 5 0 2727 2817 447890696 447890606 1.330000e-29 141.0
36 TraesCS5B01G022700 chr6B 89.908 109 6 4 2708 2813 512256640 512256534 6.190000e-28 135.0
37 TraesCS5B01G022700 chr3B 96.552 87 3 0 2727 2813 62394195 62394281 1.030000e-30 145.0
38 TraesCS5B01G022700 chr7B 92.784 97 5 2 2724 2819 500725950 500726045 4.790000e-29 139.0
39 TraesCS5B01G022700 chr7B 93.548 93 4 1 2727 2819 639796282 639796192 1.720000e-28 137.0
40 TraesCS5B01G022700 chr3A 92.784 97 5 2 2718 2814 57262144 57262238 4.790000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G022700 chr5B 21151281 21154837 3556 False 2281.00 6569 84.970000 1 3557 3 chr5B.!!$F1 3556
1 TraesCS5B01G022700 chr5D 28638833 28643463 4630 False 563.80 2904 92.886571 652 3435 7 chr5D.!!$F1 2783
2 TraesCS5B01G022700 chr5A 19253630 19256088 2458 False 644.75 1144 89.030000 806 2813 4 chr5A.!!$F2 2007
3 TraesCS5B01G022700 chr5A 620389098 620389774 676 True 326.50 481 91.163000 1 540 2 chr5A.!!$R1 539
4 TraesCS5B01G022700 chr4D 423884017 423884538 521 False 693.00 693 90.370000 1 540 1 chr4D.!!$F1 539
5 TraesCS5B01G022700 chr7D 590128342 590128879 537 True 669.00 669 89.253000 1 540 1 chr7D.!!$R1 539
6 TraesCS5B01G022700 chr1A 337983432 337983945 513 True 652.00 652 89.259000 1 540 1 chr1A.!!$R1 539
7 TraesCS5B01G022700 chr1B 660005136 660005661 525 True 520.00 520 84.444000 1 540 1 chr1B.!!$R1 539
8 TraesCS5B01G022700 chr7A 148176261 148176786 525 False 344.00 344 79.279000 1 537 1 chr7A.!!$F2 536
9 TraesCS5B01G022700 chr6B 672156607 672157230 623 False 230.50 261 83.784500 1 540 2 chr6B.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 1271 0.034337 AACCTTGATGCCACGTACGT 59.966 50.0 16.72 16.72 0.00 3.57 F
982 1361 0.812014 CATACACGGCGGCATACCAA 60.812 55.0 13.24 0.00 34.57 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 3022 0.240411 CTTTGGCTGAAGCAGAGTGC 59.76 55.0 4.43 0.0 45.46 4.40 R
2813 3878 0.960364 CGGCTGGCCTCTGCTAAAAA 60.96 55.0 3.32 0.0 37.86 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 309 8.519799 ACAAATTTCTAGAAAAGAACAGGTGA 57.480 30.769 21.26 0.00 44.02 4.02
146 310 8.624776 ACAAATTTCTAGAAAAGAACAGGTGAG 58.375 33.333 21.26 2.71 44.02 3.51
175 345 4.379813 GCGACATTGATCACAGTCCATTTT 60.380 41.667 16.84 0.00 0.00 1.82
198 368 0.103390 TCCACGAGCGTCTTTGTTCA 59.897 50.000 0.00 0.00 0.00 3.18
237 453 6.811665 TCCATTTTGTGACGTGAATACTAGAG 59.188 38.462 0.00 0.00 0.00 2.43
238 454 6.811665 CCATTTTGTGACGTGAATACTAGAGA 59.188 38.462 0.00 0.00 0.00 3.10
285 623 1.303643 CAAGGCAGGGTCAAGGGTC 60.304 63.158 0.00 0.00 0.00 4.46
419 768 6.918892 AAAACAAAAGAAATAACAGGCCAC 57.081 33.333 5.01 0.00 0.00 5.01
420 769 5.606348 AACAAAAGAAATAACAGGCCACA 57.394 34.783 5.01 0.00 0.00 4.17
421 770 4.944048 ACAAAAGAAATAACAGGCCACAC 58.056 39.130 5.01 0.00 0.00 3.82
422 771 3.915437 AAAGAAATAACAGGCCACACG 57.085 42.857 5.01 0.00 0.00 4.49
423 772 1.165270 AGAAATAACAGGCCACACGC 58.835 50.000 5.01 0.00 0.00 5.34
518 880 3.498777 TCGTATCCAAACGTGATTTGCAA 59.501 39.130 0.00 0.00 45.53 4.08
540 902 1.734465 GTACTTGCATGTCTGAGCCAC 59.266 52.381 8.74 0.00 0.00 5.01
541 903 0.109153 ACTTGCATGTCTGAGCCACA 59.891 50.000 0.00 0.00 0.00 4.17
542 904 1.241165 CTTGCATGTCTGAGCCACAA 58.759 50.000 0.00 0.00 0.00 3.33
543 905 1.199327 CTTGCATGTCTGAGCCACAAG 59.801 52.381 0.00 0.00 0.00 3.16
544 906 0.109153 TGCATGTCTGAGCCACAAGT 59.891 50.000 0.00 0.00 0.00 3.16
545 907 1.242076 GCATGTCTGAGCCACAAGTT 58.758 50.000 0.00 0.00 0.00 2.66
546 908 1.198637 GCATGTCTGAGCCACAAGTTC 59.801 52.381 0.00 0.00 0.00 3.01
547 909 2.775890 CATGTCTGAGCCACAAGTTCT 58.224 47.619 0.00 0.00 0.00 3.01
548 910 3.866066 GCATGTCTGAGCCACAAGTTCTA 60.866 47.826 0.00 0.00 0.00 2.10
549 911 3.667497 TGTCTGAGCCACAAGTTCTAG 57.333 47.619 0.00 0.00 0.00 2.43
550 912 2.289072 TGTCTGAGCCACAAGTTCTAGC 60.289 50.000 0.00 0.00 0.00 3.42
551 913 1.970640 TCTGAGCCACAAGTTCTAGCA 59.029 47.619 0.00 0.00 0.00 3.49
552 914 2.568956 TCTGAGCCACAAGTTCTAGCAT 59.431 45.455 0.00 0.00 0.00 3.79
553 915 3.008375 TCTGAGCCACAAGTTCTAGCATT 59.992 43.478 0.00 0.00 0.00 3.56
554 916 4.222810 TCTGAGCCACAAGTTCTAGCATTA 59.777 41.667 0.00 0.00 0.00 1.90
555 917 4.905429 TGAGCCACAAGTTCTAGCATTAA 58.095 39.130 0.00 0.00 0.00 1.40
556 918 5.312895 TGAGCCACAAGTTCTAGCATTAAA 58.687 37.500 0.00 0.00 0.00 1.52
557 919 5.412594 TGAGCCACAAGTTCTAGCATTAAAG 59.587 40.000 0.00 0.00 0.00 1.85
558 920 5.316987 AGCCACAAGTTCTAGCATTAAAGT 58.683 37.500 0.00 0.00 0.00 2.66
559 921 5.182001 AGCCACAAGTTCTAGCATTAAAGTG 59.818 40.000 0.00 0.00 0.00 3.16
560 922 5.181245 GCCACAAGTTCTAGCATTAAAGTGA 59.819 40.000 0.00 0.00 0.00 3.41
561 923 6.603095 CCACAAGTTCTAGCATTAAAGTGAC 58.397 40.000 0.00 0.00 0.00 3.67
562 924 6.348540 CCACAAGTTCTAGCATTAAAGTGACC 60.349 42.308 0.00 0.00 0.00 4.02
563 925 5.408604 ACAAGTTCTAGCATTAAAGTGACCG 59.591 40.000 0.00 0.00 0.00 4.79
564 926 5.148651 AGTTCTAGCATTAAAGTGACCGT 57.851 39.130 0.00 0.00 0.00 4.83
565 927 5.548406 AGTTCTAGCATTAAAGTGACCGTT 58.452 37.500 0.00 0.00 0.00 4.44
566 928 5.995897 AGTTCTAGCATTAAAGTGACCGTTT 59.004 36.000 0.00 0.00 0.00 3.60
567 929 5.856126 TCTAGCATTAAAGTGACCGTTTG 57.144 39.130 0.00 0.00 0.00 2.93
568 930 3.282831 AGCATTAAAGTGACCGTTTGC 57.717 42.857 0.00 0.00 0.00 3.68
569 931 1.976045 GCATTAAAGTGACCGTTTGCG 59.024 47.619 0.00 0.00 37.95 4.85
570 932 2.603652 GCATTAAAGTGACCGTTTGCGT 60.604 45.455 0.00 0.00 36.15 5.24
571 933 3.223157 CATTAAAGTGACCGTTTGCGTC 58.777 45.455 0.00 0.00 36.15 5.19
572 934 1.937278 TAAAGTGACCGTTTGCGTCA 58.063 45.000 0.00 0.00 36.15 4.35
573 935 1.088306 AAAGTGACCGTTTGCGTCAA 58.912 45.000 0.00 0.00 36.15 3.18
574 936 0.655733 AAGTGACCGTTTGCGTCAAG 59.344 50.000 0.00 0.00 36.15 3.02
575 937 0.461339 AGTGACCGTTTGCGTCAAGT 60.461 50.000 0.00 0.00 36.15 3.16
576 938 0.375803 GTGACCGTTTGCGTCAAGTT 59.624 50.000 0.00 0.00 36.15 2.66
577 939 0.653636 TGACCGTTTGCGTCAAGTTC 59.346 50.000 0.00 0.00 36.15 3.01
578 940 0.653636 GACCGTTTGCGTCAAGTTCA 59.346 50.000 0.00 0.00 36.15 3.18
579 941 0.655733 ACCGTTTGCGTCAAGTTCAG 59.344 50.000 0.00 0.00 36.15 3.02
580 942 0.934496 CCGTTTGCGTCAAGTTCAGA 59.066 50.000 0.00 0.00 36.15 3.27
581 943 1.332904 CCGTTTGCGTCAAGTTCAGAC 60.333 52.381 0.00 0.00 36.15 3.51
582 944 1.326245 CGTTTGCGTCAAGTTCAGACA 59.674 47.619 0.00 0.00 35.77 3.41
583 945 2.032894 CGTTTGCGTCAAGTTCAGACAT 60.033 45.455 0.00 0.00 35.77 3.06
584 946 3.545633 GTTTGCGTCAAGTTCAGACATC 58.454 45.455 0.00 0.00 35.77 3.06
585 947 2.524569 TGCGTCAAGTTCAGACATCA 57.475 45.000 0.00 0.00 35.77 3.07
586 948 2.135139 TGCGTCAAGTTCAGACATCAC 58.865 47.619 0.00 0.00 35.77 3.06
587 949 1.461127 GCGTCAAGTTCAGACATCACC 59.539 52.381 0.00 0.00 35.77 4.02
588 950 1.721389 CGTCAAGTTCAGACATCACCG 59.279 52.381 0.00 0.00 35.77 4.94
589 951 2.069273 GTCAAGTTCAGACATCACCGG 58.931 52.381 0.00 0.00 36.06 5.28
590 952 1.691976 TCAAGTTCAGACATCACCGGT 59.308 47.619 0.00 0.00 0.00 5.28
591 953 1.800586 CAAGTTCAGACATCACCGGTG 59.199 52.381 29.26 29.26 0.00 4.94
592 954 1.048601 AGTTCAGACATCACCGGTGT 58.951 50.000 32.74 18.15 0.00 4.16
593 955 2.244695 AGTTCAGACATCACCGGTGTA 58.755 47.619 32.74 20.21 0.00 2.90
594 956 2.631062 AGTTCAGACATCACCGGTGTAA 59.369 45.455 32.74 16.65 0.00 2.41
595 957 3.260884 AGTTCAGACATCACCGGTGTAAT 59.739 43.478 32.74 18.27 0.00 1.89
596 958 3.973206 TCAGACATCACCGGTGTAATT 57.027 42.857 32.74 16.40 0.00 1.40
597 959 5.046878 AGTTCAGACATCACCGGTGTAATTA 60.047 40.000 32.74 15.05 0.00 1.40
598 960 5.408880 TCAGACATCACCGGTGTAATTAA 57.591 39.130 32.74 14.26 0.00 1.40
599 961 5.172934 TCAGACATCACCGGTGTAATTAAC 58.827 41.667 32.74 17.97 0.00 2.01
600 962 5.046878 TCAGACATCACCGGTGTAATTAACT 60.047 40.000 32.74 19.65 0.00 2.24
601 963 5.291128 CAGACATCACCGGTGTAATTAACTC 59.709 44.000 32.74 16.28 0.00 3.01
602 964 5.187186 AGACATCACCGGTGTAATTAACTCT 59.813 40.000 32.74 17.96 0.00 3.24
603 965 6.379133 AGACATCACCGGTGTAATTAACTCTA 59.621 38.462 32.74 10.56 0.00 2.43
604 966 7.069578 AGACATCACCGGTGTAATTAACTCTAT 59.930 37.037 32.74 12.48 0.00 1.98
605 967 8.241497 ACATCACCGGTGTAATTAACTCTATA 57.759 34.615 32.74 9.88 0.00 1.31
606 968 8.698210 ACATCACCGGTGTAATTAACTCTATAA 58.302 33.333 32.74 9.19 0.00 0.98
607 969 9.706691 CATCACCGGTGTAATTAACTCTATAAT 57.293 33.333 32.74 11.17 0.00 1.28
610 972 9.970395 CACCGGTGTAATTAACTCTATAATACA 57.030 33.333 26.95 0.00 0.00 2.29
650 1012 4.439057 GACTCAAGTCACCAAACTGTACA 58.561 43.478 5.28 0.00 44.18 2.90
699 1069 0.877071 CTCCACAGTGCACACCAATC 59.123 55.000 21.04 0.00 0.00 2.67
708 1078 1.133823 TGCACACCAATCCTTGAGTGT 60.134 47.619 11.35 9.61 42.05 3.55
728 1098 5.705905 AGTGTTAGGCTAAGAAAATGTGACC 59.294 40.000 7.33 0.00 0.00 4.02
729 1099 5.705905 GTGTTAGGCTAAGAAAATGTGACCT 59.294 40.000 7.33 0.00 0.00 3.85
730 1100 6.206829 GTGTTAGGCTAAGAAAATGTGACCTT 59.793 38.462 7.33 0.00 0.00 3.50
731 1101 6.206634 TGTTAGGCTAAGAAAATGTGACCTTG 59.793 38.462 7.33 0.00 0.00 3.61
732 1102 4.985538 AGGCTAAGAAAATGTGACCTTGA 58.014 39.130 0.00 0.00 0.00 3.02
792 1162 3.054878 CCAAAAGCAGATGAAAGCACAC 58.945 45.455 0.00 0.00 0.00 3.82
799 1169 3.001414 CAGATGAAAGCACACAGAGAGG 58.999 50.000 0.00 0.00 0.00 3.69
838 1208 0.600057 GTCCTTGCTTTCTTGCCCAG 59.400 55.000 0.00 0.00 0.00 4.45
873 1245 1.151777 ACCATTCTACGCAATCGCCG 61.152 55.000 0.00 0.00 39.84 6.46
885 1257 0.889186 AATCGCCGTCAAGCAACCTT 60.889 50.000 0.00 0.00 0.00 3.50
898 1270 0.442310 CAACCTTGATGCCACGTACG 59.558 55.000 15.01 15.01 0.00 3.67
899 1271 0.034337 AACCTTGATGCCACGTACGT 59.966 50.000 16.72 16.72 0.00 3.57
938 1315 8.489489 ACCCTTGGAATACATATATCTGCATAG 58.511 37.037 0.00 0.00 0.00 2.23
939 1316 7.935755 CCCTTGGAATACATATATCTGCATAGG 59.064 40.741 0.00 0.00 0.00 2.57
982 1361 0.812014 CATACACGGCGGCATACCAA 60.812 55.000 13.24 0.00 34.57 3.67
1302 1687 4.095400 AGCCTCCCCATCGTCCCT 62.095 66.667 0.00 0.00 0.00 4.20
1395 1786 3.746889 CAGCCGCCGCCATTTTCA 61.747 61.111 0.00 0.00 34.57 2.69
1563 1957 4.708386 CCAAAGCCACCGCCGGTA 62.708 66.667 9.25 0.00 32.11 4.02
1578 1972 1.888436 CGGTAGAGAAGCCCACTGCA 61.888 60.000 0.00 0.00 44.83 4.41
1764 2170 2.181021 CTTCCTCCGTTCCCGTCG 59.819 66.667 0.00 0.00 0.00 5.12
1878 2284 2.203139 CCACCACCTGAACGTGCA 60.203 61.111 0.00 0.00 32.10 4.57
1938 2822 3.003173 CCTCCTCCGGTGAAGCCA 61.003 66.667 4.76 0.00 36.97 4.75
2004 2888 2.680352 GCTCGAGACACCCCTCCA 60.680 66.667 18.75 0.00 0.00 3.86
2076 2960 4.143333 CCGGCGATCGTTCCTGGT 62.143 66.667 17.81 0.00 37.11 4.00
2138 3022 3.403038 CACCTCCAAAACAGAGTACAGG 58.597 50.000 0.00 0.00 0.00 4.00
2154 3038 2.033141 GGCACTCTGCTTCAGCCA 59.967 61.111 0.00 0.00 44.28 4.75
2184 3068 3.244561 CCCCGCTGTCAGATATACCAATT 60.245 47.826 3.32 0.00 0.00 2.32
2248 3141 2.022195 CTAGTCATCGTCTCCCGGAAA 58.978 52.381 0.73 0.00 37.11 3.13
2256 3149 0.250770 GTCTCCCGGAAACAAAGGCT 60.251 55.000 0.73 0.00 0.00 4.58
2330 3223 1.964552 CCATTGCTGGAGGAGATGAC 58.035 55.000 0.00 0.00 46.37 3.06
2431 3324 5.880901 AGAATATGGAAGTGTCACCAAAGT 58.119 37.500 0.00 0.00 39.69 2.66
2461 3354 2.833582 GCGAGGATCCAGGGACGA 60.834 66.667 15.82 0.00 0.00 4.20
2522 3415 3.771160 GGTGCTCGTGGGGATCGT 61.771 66.667 0.00 0.00 0.00 3.73
2580 3473 0.471191 CAGCTCCTGCCACCATATGA 59.529 55.000 3.65 0.00 40.80 2.15
2632 3682 9.756461 GCTGAAGTTAAACTACTAACTAATTGC 57.244 33.333 0.00 0.00 40.47 3.56
2680 3734 9.586150 CATGCAATCGTTTATATCAGACTTTAC 57.414 33.333 0.00 0.00 0.00 2.01
2715 3777 9.046296 CAAGAGACATAAAGTTTAACACTCAGT 57.954 33.333 18.97 10.12 32.94 3.41
2716 3778 9.614792 AAGAGACATAAAGTTTAACACTCAGTT 57.385 29.630 18.97 9.65 44.27 3.16
2721 3783 9.925268 ACATAAAGTTTAACACTCAGTTTTACG 57.075 29.630 0.00 0.00 41.64 3.18
2722 3784 9.377383 CATAAAGTTTAACACTCAGTTTTACGG 57.623 33.333 0.00 0.00 41.64 4.02
2723 3785 7.614124 AAAGTTTAACACTCAGTTTTACGGA 57.386 32.000 0.00 0.00 41.64 4.69
2724 3786 6.839820 AGTTTAACACTCAGTTTTACGGAG 57.160 37.500 5.60 5.60 44.32 4.63
2725 3787 5.235831 AGTTTAACACTCAGTTTTACGGAGC 59.764 40.000 6.85 0.00 42.88 4.70
2734 3799 1.275573 GTTTTACGGAGCACTCCCTCT 59.724 52.381 11.09 0.00 46.96 3.69
2740 3805 1.134965 CGGAGCACTCCCTCTGTAAAG 60.135 57.143 11.09 0.00 46.96 1.85
2741 3806 2.180276 GGAGCACTCCCTCTGTAAAGA 58.820 52.381 5.30 0.00 43.94 2.52
2753 3818 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
2819 3884 9.774413 TTTCTTTACAGAGGGAGTACTTTTTAG 57.226 33.333 0.00 0.00 0.00 1.85
2822 3887 5.153950 ACAGAGGGAGTACTTTTTAGCAG 57.846 43.478 0.00 0.00 0.00 4.24
2827 3892 3.271729 GGAGTACTTTTTAGCAGAGGCC 58.728 50.000 0.00 0.00 42.56 5.19
2853 3918 5.499812 GCCGTACGCATAAAGTTTAGAGAAC 60.500 44.000 10.49 0.00 37.47 3.01
2867 4034 9.832445 AAGTTTAGAGAACATTAAACTGTCTCA 57.168 29.630 9.59 0.00 44.84 3.27
2872 4039 7.283329 AGAGAACATTAAACTGTCTCAAGGTT 58.717 34.615 9.92 0.66 31.43 3.50
2873 4040 7.227512 AGAGAACATTAAACTGTCTCAAGGTTG 59.772 37.037 9.92 0.00 31.43 3.77
2878 4045 7.724061 ACATTAAACTGTCTCAAGGTTGGTTAT 59.276 33.333 0.00 0.00 0.00 1.89
2967 4134 9.339850 AGATTATCATCCAAGATCAACAAAGAG 57.660 33.333 0.00 0.00 0.00 2.85
2968 4135 9.118300 GATTATCATCCAAGATCAACAAAGAGT 57.882 33.333 0.00 0.00 0.00 3.24
2969 4136 6.998968 ATCATCCAAGATCAACAAAGAGTC 57.001 37.500 0.00 0.00 0.00 3.36
2970 4137 5.868454 TCATCCAAGATCAACAAAGAGTCA 58.132 37.500 0.00 0.00 0.00 3.41
2999 4169 4.067972 TGTCTTGTACAAGGGTGAGAAC 57.932 45.455 30.35 20.66 38.88 3.01
3002 4177 3.964688 TCTTGTACAAGGGTGAGAACTGA 59.035 43.478 30.35 8.45 38.88 3.41
3013 4188 3.804873 GGTGAGAACTGAGTTGTGTCTTC 59.195 47.826 0.90 0.00 0.00 2.87
3015 4190 4.870426 GTGAGAACTGAGTTGTGTCTTCAA 59.130 41.667 0.90 0.00 0.00 2.69
3053 5873 7.855904 ACGACAAAGCTAAAACTTCAGTTAATG 59.144 33.333 0.00 0.00 37.25 1.90
3057 5877 9.515020 CAAAGCTAAAACTTCAGTTAATGTGAA 57.485 29.630 0.00 3.87 37.25 3.18
3072 5892 3.328382 TGTGAAAATGAGGGAGTACCG 57.672 47.619 0.00 0.00 46.96 4.02
3080 5900 0.529992 GAGGGAGTACCGAAATGGCG 60.530 60.000 0.00 0.00 46.96 5.69
3094 5914 2.317530 ATGGCGAGGAAAAGACTAGC 57.682 50.000 0.00 0.00 36.09 3.42
3095 5915 1.267121 TGGCGAGGAAAAGACTAGCT 58.733 50.000 0.00 0.00 36.88 3.32
3096 5916 2.453521 TGGCGAGGAAAAGACTAGCTA 58.546 47.619 0.00 0.00 36.88 3.32
3097 5917 2.427453 TGGCGAGGAAAAGACTAGCTAG 59.573 50.000 19.44 19.44 36.88 3.42
3098 5918 2.223852 GGCGAGGAAAAGACTAGCTAGG 60.224 54.545 24.35 7.13 36.88 3.02
3099 5919 2.800273 GCGAGGAAAAGACTAGCTAGGC 60.800 54.545 24.35 22.21 34.35 3.93
3100 5920 2.691011 CGAGGAAAAGACTAGCTAGGCT 59.309 50.000 24.19 24.19 45.60 4.58
3101 5921 3.884091 CGAGGAAAAGACTAGCTAGGCTA 59.116 47.826 29.49 0.00 41.95 3.93
3102 5922 4.521256 CGAGGAAAAGACTAGCTAGGCTAT 59.479 45.833 29.49 20.73 41.95 2.97
3103 5923 5.563867 CGAGGAAAAGACTAGCTAGGCTATG 60.564 48.000 29.49 10.29 41.95 2.23
3104 5924 4.591072 AGGAAAAGACTAGCTAGGCTATGG 59.409 45.833 29.49 0.49 41.95 2.74
3105 5925 4.345547 GGAAAAGACTAGCTAGGCTATGGT 59.654 45.833 29.49 14.48 41.95 3.55
3106 5926 5.510009 GGAAAAGACTAGCTAGGCTATGGTC 60.510 48.000 29.49 21.06 41.95 4.02
3107 5927 2.785562 AGACTAGCTAGGCTATGGTCG 58.214 52.381 28.29 0.00 40.69 4.79
3108 5928 1.200484 GACTAGCTAGGCTATGGTCGC 59.800 57.143 24.35 0.00 40.54 5.19
3140 5960 5.056480 TGTACAAGGACAAGAATCACACTG 58.944 41.667 0.00 0.00 0.00 3.66
3145 5965 3.134623 AGGACAAGAATCACACTGTGACA 59.865 43.478 15.86 0.04 45.65 3.58
3156 5976 1.337703 CACTGTGACATTGTGTTGGGG 59.662 52.381 0.32 0.00 0.00 4.96
3157 5977 1.064017 ACTGTGACATTGTGTTGGGGT 60.064 47.619 0.00 0.00 0.00 4.95
3170 6017 3.572255 GTGTTGGGGTCACAAATGTATGT 59.428 43.478 0.00 0.00 36.05 2.29
3172 6019 4.762765 TGTTGGGGTCACAAATGTATGTAC 59.237 41.667 0.00 0.00 31.17 2.90
3173 6020 3.958018 TGGGGTCACAAATGTATGTACC 58.042 45.455 0.00 0.00 30.84 3.34
3197 6044 4.586841 TGGGGTCACAATTTAGACAAAAGG 59.413 41.667 8.75 0.00 36.50 3.11
3295 6151 5.207768 CGATCGAAATTTTGAGCCTAATGG 58.792 41.667 10.26 0.00 0.00 3.16
3308 6164 3.161866 GCCTAATGGACCAAACCAAGAA 58.838 45.455 0.00 0.00 43.47 2.52
3324 6180 8.571336 CAAACCAAGAAGAACATGAAACTCTAT 58.429 33.333 0.00 0.00 0.00 1.98
3326 6182 7.227156 ACCAAGAAGAACATGAAACTCTATGT 58.773 34.615 0.00 0.00 39.08 2.29
3337 6193 6.313519 TGAAACTCTATGTAAAGCCATCCT 57.686 37.500 0.00 0.00 0.00 3.24
3345 6201 1.745653 GTAAAGCCATCCTGAGCAACC 59.254 52.381 0.00 0.00 0.00 3.77
3374 6230 4.612259 GCATCAGCTATTTCTTATGCACGG 60.612 45.833 0.00 0.00 41.14 4.94
3384 6240 3.605634 TCTTATGCACGGCAAATGTACT 58.394 40.909 2.68 0.00 43.62 2.73
3385 6241 3.373748 TCTTATGCACGGCAAATGTACTG 59.626 43.478 2.68 0.00 43.62 2.74
3412 6269 4.520492 AGGACAAATCACAAGAACATCACC 59.480 41.667 0.00 0.00 0.00 4.02
3413 6270 4.278170 GGACAAATCACAAGAACATCACCA 59.722 41.667 0.00 0.00 0.00 4.17
3418 6275 7.769970 ACAAATCACAAGAACATCACCAAAATT 59.230 29.630 0.00 0.00 0.00 1.82
3435 6292 1.784358 ATTGGATGGATGTGCCCAAG 58.216 50.000 0.00 0.00 41.38 3.61
3436 6293 0.703488 TTGGATGGATGTGCCCAAGA 59.297 50.000 0.00 0.00 40.04 3.02
3437 6294 0.928505 TGGATGGATGTGCCCAAGAT 59.071 50.000 0.00 0.00 40.04 2.40
3438 6295 1.133699 TGGATGGATGTGCCCAAGATC 60.134 52.381 0.00 0.00 40.04 2.75
3439 6296 1.233019 GATGGATGTGCCCAAGATCG 58.767 55.000 0.00 0.00 40.04 3.69
3440 6297 0.820891 ATGGATGTGCCCAAGATCGC 60.821 55.000 0.00 0.00 40.04 4.58
3441 6298 1.451927 GGATGTGCCCAAGATCGCA 60.452 57.895 0.00 0.00 0.00 5.10
3445 6302 4.223800 TGCCCAAGATCGCACATC 57.776 55.556 0.00 0.00 0.00 3.06
3446 6303 1.299321 TGCCCAAGATCGCACATCA 59.701 52.632 0.00 0.00 0.00 3.07
3447 6304 1.026182 TGCCCAAGATCGCACATCAC 61.026 55.000 0.00 0.00 0.00 3.06
3448 6305 0.745845 GCCCAAGATCGCACATCACT 60.746 55.000 0.00 0.00 0.00 3.41
3449 6306 1.473257 GCCCAAGATCGCACATCACTA 60.473 52.381 0.00 0.00 0.00 2.74
3450 6307 2.477825 CCCAAGATCGCACATCACTAG 58.522 52.381 0.00 0.00 0.00 2.57
3451 6308 2.101415 CCCAAGATCGCACATCACTAGA 59.899 50.000 0.00 0.00 0.00 2.43
3452 6309 3.430790 CCCAAGATCGCACATCACTAGAA 60.431 47.826 0.00 0.00 0.00 2.10
3453 6310 4.183865 CCAAGATCGCACATCACTAGAAA 58.816 43.478 0.00 0.00 0.00 2.52
3454 6311 4.631377 CCAAGATCGCACATCACTAGAAAA 59.369 41.667 0.00 0.00 0.00 2.29
3455 6312 5.122239 CCAAGATCGCACATCACTAGAAAAA 59.878 40.000 0.00 0.00 0.00 1.94
3476 6333 6.409524 AAAATCAAGCTTGAACAGGAATCA 57.590 33.333 31.55 6.43 41.13 2.57
3477 6334 6.409524 AAATCAAGCTTGAACAGGAATCAA 57.590 33.333 31.55 5.88 41.13 2.57
3478 6335 4.836125 TCAAGCTTGAACAGGAATCAAC 57.164 40.909 26.61 0.00 33.47 3.18
3479 6336 3.569701 TCAAGCTTGAACAGGAATCAACC 59.430 43.478 26.61 0.00 33.47 3.77
3480 6337 2.519013 AGCTTGAACAGGAATCAACCC 58.481 47.619 0.00 0.00 33.47 4.11
3481 6338 1.546029 GCTTGAACAGGAATCAACCCC 59.454 52.381 0.00 0.00 33.47 4.95
3482 6339 2.875296 CTTGAACAGGAATCAACCCCA 58.125 47.619 0.00 0.00 33.47 4.96
3483 6340 3.230134 CTTGAACAGGAATCAACCCCAA 58.770 45.455 0.00 0.00 33.47 4.12
3484 6341 2.593026 TGAACAGGAATCAACCCCAAC 58.407 47.619 0.00 0.00 0.00 3.77
3485 6342 2.176798 TGAACAGGAATCAACCCCAACT 59.823 45.455 0.00 0.00 0.00 3.16
3486 6343 3.230976 GAACAGGAATCAACCCCAACTT 58.769 45.455 0.00 0.00 0.00 2.66
3487 6344 2.597455 ACAGGAATCAACCCCAACTTG 58.403 47.619 0.00 0.00 0.00 3.16
3488 6345 1.273327 CAGGAATCAACCCCAACTTGC 59.727 52.381 0.00 0.00 0.00 4.01
3489 6346 1.133199 AGGAATCAACCCCAACTTGCA 60.133 47.619 0.00 0.00 0.00 4.08
3490 6347 1.000843 GGAATCAACCCCAACTTGCAC 59.999 52.381 0.00 0.00 0.00 4.57
3491 6348 1.686052 GAATCAACCCCAACTTGCACA 59.314 47.619 0.00 0.00 0.00 4.57
3492 6349 1.786937 ATCAACCCCAACTTGCACAA 58.213 45.000 0.00 0.00 0.00 3.33
3493 6350 1.110442 TCAACCCCAACTTGCACAAG 58.890 50.000 8.82 8.82 43.79 3.16
3504 6361 2.658285 CTTGCACAAGTGATCTGCAAC 58.342 47.619 13.54 0.00 40.04 4.17
3505 6362 1.971481 TGCACAAGTGATCTGCAACT 58.029 45.000 4.04 0.00 32.17 3.16
3506 6363 1.605232 TGCACAAGTGATCTGCAACTG 59.395 47.619 4.04 0.00 32.17 3.16
3507 6364 1.665161 GCACAAGTGATCTGCAACTGC 60.665 52.381 4.04 0.00 42.50 4.40
3522 6379 5.505173 GCAACTGCAACATCACCTATATT 57.495 39.130 0.00 0.00 41.59 1.28
3523 6380 5.894807 GCAACTGCAACATCACCTATATTT 58.105 37.500 0.00 0.00 41.59 1.40
3524 6381 5.973565 GCAACTGCAACATCACCTATATTTC 59.026 40.000 0.00 0.00 41.59 2.17
3525 6382 6.498304 CAACTGCAACATCACCTATATTTCC 58.502 40.000 0.00 0.00 0.00 3.13
3526 6383 5.133221 ACTGCAACATCACCTATATTTCCC 58.867 41.667 0.00 0.00 0.00 3.97
3527 6384 5.103940 ACTGCAACATCACCTATATTTCCCT 60.104 40.000 0.00 0.00 0.00 4.20
3528 6385 5.132502 TGCAACATCACCTATATTTCCCTG 58.867 41.667 0.00 0.00 0.00 4.45
3529 6386 4.520492 GCAACATCACCTATATTTCCCTGG 59.480 45.833 0.00 0.00 0.00 4.45
3530 6387 5.694995 CAACATCACCTATATTTCCCTGGT 58.305 41.667 0.00 0.00 0.00 4.00
3531 6388 5.994416 ACATCACCTATATTTCCCTGGTT 57.006 39.130 0.00 0.00 0.00 3.67
3532 6389 5.941788 ACATCACCTATATTTCCCTGGTTC 58.058 41.667 0.00 0.00 0.00 3.62
3533 6390 5.163088 ACATCACCTATATTTCCCTGGTTCC 60.163 44.000 0.00 0.00 0.00 3.62
3534 6391 4.376223 TCACCTATATTTCCCTGGTTCCA 58.624 43.478 0.00 0.00 0.00 3.53
3535 6392 4.412199 TCACCTATATTTCCCTGGTTCCAG 59.588 45.833 11.52 11.52 0.00 3.86
3536 6393 4.166144 CACCTATATTTCCCTGGTTCCAGT 59.834 45.833 16.33 1.83 32.56 4.00
3537 6394 4.412528 ACCTATATTTCCCTGGTTCCAGTC 59.587 45.833 16.33 0.00 32.56 3.51
3538 6395 3.560636 ATATTTCCCTGGTTCCAGTCG 57.439 47.619 16.33 7.31 32.56 4.18
3539 6396 1.358152 ATTTCCCTGGTTCCAGTCGA 58.642 50.000 16.33 9.28 32.56 4.20
3540 6397 0.395312 TTTCCCTGGTTCCAGTCGAC 59.605 55.000 7.70 7.70 32.56 4.20
3541 6398 0.761323 TTCCCTGGTTCCAGTCGACA 60.761 55.000 19.50 0.00 32.56 4.35
3542 6399 0.761323 TCCCTGGTTCCAGTCGACAA 60.761 55.000 19.50 0.00 32.56 3.18
3543 6400 0.320771 CCCTGGTTCCAGTCGACAAG 60.321 60.000 19.50 9.72 32.56 3.16
3544 6401 0.393077 CCTGGTTCCAGTCGACAAGT 59.607 55.000 19.50 0.00 32.56 3.16
3545 6402 1.502231 CTGGTTCCAGTCGACAAGTG 58.498 55.000 19.50 7.34 0.00 3.16
3547 6404 1.228657 GGTTCCAGTCGACAAGTGGC 61.229 60.000 19.50 5.00 46.68 5.01
3548 6405 0.531974 GTTCCAGTCGACAAGTGGCA 60.532 55.000 19.50 4.33 46.68 4.92
3549 6406 0.396435 TTCCAGTCGACAAGTGGCAT 59.604 50.000 19.50 0.00 46.68 4.40
3550 6407 0.396435 TCCAGTCGACAAGTGGCATT 59.604 50.000 19.50 0.00 46.68 3.56
3551 6408 1.621317 TCCAGTCGACAAGTGGCATTA 59.379 47.619 19.50 0.00 46.68 1.90
3552 6409 1.732259 CCAGTCGACAAGTGGCATTAC 59.268 52.381 19.50 0.00 41.59 1.89
3553 6410 2.412870 CAGTCGACAAGTGGCATTACA 58.587 47.619 19.50 0.00 0.00 2.41
3554 6411 3.002791 CAGTCGACAAGTGGCATTACAT 58.997 45.455 19.50 0.00 0.00 2.29
3555 6412 3.062639 CAGTCGACAAGTGGCATTACATC 59.937 47.826 19.50 0.00 0.00 3.06
3556 6413 3.000041 GTCGACAAGTGGCATTACATCA 59.000 45.455 11.55 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 9.953697 TGCAAACTTAATAACTTACGTTTCATT 57.046 25.926 0.00 0.00 37.26 2.57
145 309 2.292267 GTGATCAATGTCGCCCATTCT 58.708 47.619 0.00 0.00 41.93 2.40
146 310 2.016318 TGTGATCAATGTCGCCCATTC 58.984 47.619 0.00 0.00 41.93 2.67
198 368 8.893727 GTCACAAAATGGATAACTAATGTAGCT 58.106 33.333 0.00 0.00 0.00 3.32
237 453 1.202121 GGACGTAGCGACTACACCTTC 60.202 57.143 14.49 6.93 36.83 3.46
238 454 0.807496 GGACGTAGCGACTACACCTT 59.193 55.000 14.49 0.00 36.83 3.50
325 663 1.559682 GTGGGTCCCATATGTCAGTGT 59.440 52.381 15.49 0.00 35.28 3.55
365 705 9.949174 AAAAACAACTTGAATTGGCATTTTATC 57.051 25.926 0.00 0.00 33.63 1.75
394 734 8.041323 TGTGGCCTGTTATTTCTTTTGTTTTTA 58.959 29.630 3.32 0.00 0.00 1.52
403 743 1.539827 GCGTGTGGCCTGTTATTTCTT 59.460 47.619 3.32 0.00 34.80 2.52
404 744 1.165270 GCGTGTGGCCTGTTATTTCT 58.835 50.000 3.32 0.00 34.80 2.52
405 745 3.694889 GCGTGTGGCCTGTTATTTC 57.305 52.632 3.32 0.00 34.80 2.17
419 768 2.363018 TGAGAGGAGGAGGGCGTG 60.363 66.667 0.00 0.00 0.00 5.34
420 769 2.043450 CTGAGAGGAGGAGGGCGT 60.043 66.667 0.00 0.00 0.00 5.68
421 770 3.535962 GCTGAGAGGAGGAGGGCG 61.536 72.222 0.00 0.00 0.00 6.13
422 771 3.160748 GGCTGAGAGGAGGAGGGC 61.161 72.222 0.00 0.00 0.00 5.19
423 772 1.002792 AAGGCTGAGAGGAGGAGGG 59.997 63.158 0.00 0.00 0.00 4.30
424 773 1.048160 GGAAGGCTGAGAGGAGGAGG 61.048 65.000 0.00 0.00 0.00 4.30
425 774 0.325110 TGGAAGGCTGAGAGGAGGAG 60.325 60.000 0.00 0.00 0.00 3.69
426 775 0.117140 TTGGAAGGCTGAGAGGAGGA 59.883 55.000 0.00 0.00 0.00 3.71
518 880 2.026915 TGGCTCAGACATGCAAGTACAT 60.027 45.455 0.00 0.00 0.00 2.29
540 902 5.408604 ACGGTCACTTTAATGCTAGAACTTG 59.591 40.000 0.00 0.00 0.00 3.16
541 903 5.548406 ACGGTCACTTTAATGCTAGAACTT 58.452 37.500 0.00 0.00 0.00 2.66
542 904 5.148651 ACGGTCACTTTAATGCTAGAACT 57.851 39.130 0.00 0.00 0.00 3.01
543 905 5.857822 AACGGTCACTTTAATGCTAGAAC 57.142 39.130 0.00 0.00 0.00 3.01
544 906 5.334569 GCAAACGGTCACTTTAATGCTAGAA 60.335 40.000 0.00 0.00 0.00 2.10
545 907 4.153475 GCAAACGGTCACTTTAATGCTAGA 59.847 41.667 0.00 0.00 0.00 2.43
546 908 4.403453 GCAAACGGTCACTTTAATGCTAG 58.597 43.478 0.00 0.00 0.00 3.42
547 909 3.120477 CGCAAACGGTCACTTTAATGCTA 60.120 43.478 0.00 0.00 34.97 3.49
548 910 2.350388 CGCAAACGGTCACTTTAATGCT 60.350 45.455 0.00 0.00 34.97 3.79
549 911 1.976045 CGCAAACGGTCACTTTAATGC 59.024 47.619 0.00 0.00 34.97 3.56
550 912 3.223157 GACGCAAACGGTCACTTTAATG 58.777 45.455 0.00 0.00 46.04 1.90
551 913 2.873472 TGACGCAAACGGTCACTTTAAT 59.127 40.909 0.00 0.00 46.04 1.40
552 914 2.277969 TGACGCAAACGGTCACTTTAA 58.722 42.857 0.00 0.00 46.04 1.52
553 915 1.937278 TGACGCAAACGGTCACTTTA 58.063 45.000 0.00 0.00 46.04 1.85
554 916 1.063469 CTTGACGCAAACGGTCACTTT 59.937 47.619 0.00 0.00 46.04 2.66
555 917 0.655733 CTTGACGCAAACGGTCACTT 59.344 50.000 0.00 0.00 46.04 3.16
556 918 0.461339 ACTTGACGCAAACGGTCACT 60.461 50.000 0.00 0.00 46.04 3.41
557 919 0.375803 AACTTGACGCAAACGGTCAC 59.624 50.000 0.00 0.00 46.04 3.67
558 920 0.653636 GAACTTGACGCAAACGGTCA 59.346 50.000 0.00 0.00 46.04 4.02
559 921 0.653636 TGAACTTGACGCAAACGGTC 59.346 50.000 0.00 0.00 46.04 4.79
560 922 0.655733 CTGAACTTGACGCAAACGGT 59.344 50.000 0.00 0.00 46.04 4.83
561 923 0.934496 TCTGAACTTGACGCAAACGG 59.066 50.000 0.00 0.00 46.04 4.44
563 925 3.002246 TGATGTCTGAACTTGACGCAAAC 59.998 43.478 0.00 0.00 37.26 2.93
564 926 3.002246 GTGATGTCTGAACTTGACGCAAA 59.998 43.478 0.00 0.00 37.26 3.68
565 927 2.543848 GTGATGTCTGAACTTGACGCAA 59.456 45.455 0.00 0.00 37.26 4.85
566 928 2.135139 GTGATGTCTGAACTTGACGCA 58.865 47.619 0.00 0.00 37.26 5.24
567 929 1.461127 GGTGATGTCTGAACTTGACGC 59.539 52.381 0.00 0.00 37.26 5.19
568 930 1.721389 CGGTGATGTCTGAACTTGACG 59.279 52.381 0.00 0.00 37.26 4.35
569 931 2.069273 CCGGTGATGTCTGAACTTGAC 58.931 52.381 0.00 0.00 35.21 3.18
570 932 1.691976 ACCGGTGATGTCTGAACTTGA 59.308 47.619 6.12 0.00 0.00 3.02
571 933 1.800586 CACCGGTGATGTCTGAACTTG 59.199 52.381 31.31 0.00 0.00 3.16
572 934 1.416401 ACACCGGTGATGTCTGAACTT 59.584 47.619 40.21 11.04 0.00 2.66
573 935 1.048601 ACACCGGTGATGTCTGAACT 58.951 50.000 40.21 11.62 0.00 3.01
574 936 2.736144 TACACCGGTGATGTCTGAAC 57.264 50.000 40.21 0.00 0.00 3.18
575 937 3.973206 ATTACACCGGTGATGTCTGAA 57.027 42.857 40.21 20.03 0.00 3.02
576 938 3.973206 AATTACACCGGTGATGTCTGA 57.027 42.857 40.21 15.28 0.00 3.27
577 939 5.175859 AGTTAATTACACCGGTGATGTCTG 58.824 41.667 40.21 13.34 0.00 3.51
578 940 5.187186 AGAGTTAATTACACCGGTGATGTCT 59.813 40.000 40.21 24.60 0.00 3.41
579 941 5.416947 AGAGTTAATTACACCGGTGATGTC 58.583 41.667 40.21 21.64 0.00 3.06
580 942 5.416271 AGAGTTAATTACACCGGTGATGT 57.584 39.130 40.21 21.17 0.00 3.06
581 943 9.706691 ATTATAGAGTTAATTACACCGGTGATG 57.293 33.333 40.21 15.82 0.00 3.07
584 946 9.970395 TGTATTATAGAGTTAATTACACCGGTG 57.030 33.333 32.83 32.83 0.00 4.94
615 977 8.816894 TGGTGACTTGAGTCTTCTATTAAGAAT 58.183 33.333 12.00 0.00 44.99 2.40
616 978 8.190326 TGGTGACTTGAGTCTTCTATTAAGAA 57.810 34.615 12.00 0.00 44.99 2.52
617 979 7.776618 TGGTGACTTGAGTCTTCTATTAAGA 57.223 36.000 12.00 0.00 44.99 2.10
618 980 8.713271 GTTTGGTGACTTGAGTCTTCTATTAAG 58.287 37.037 12.00 0.00 44.99 1.85
619 981 8.429641 AGTTTGGTGACTTGAGTCTTCTATTAA 58.570 33.333 12.00 0.00 44.99 1.40
620 982 7.872993 CAGTTTGGTGACTTGAGTCTTCTATTA 59.127 37.037 12.00 0.00 44.99 0.98
621 983 6.708054 CAGTTTGGTGACTTGAGTCTTCTATT 59.292 38.462 12.00 0.00 44.99 1.73
622 984 6.183361 ACAGTTTGGTGACTTGAGTCTTCTAT 60.183 38.462 12.00 0.00 44.99 1.98
623 985 5.128827 ACAGTTTGGTGACTTGAGTCTTCTA 59.871 40.000 12.00 1.89 44.99 2.10
624 986 4.080863 ACAGTTTGGTGACTTGAGTCTTCT 60.081 41.667 12.00 0.52 44.99 2.85
625 987 4.192317 ACAGTTTGGTGACTTGAGTCTTC 58.808 43.478 12.00 5.76 44.99 2.87
626 988 4.222124 ACAGTTTGGTGACTTGAGTCTT 57.778 40.909 12.00 0.00 44.99 3.01
627 989 3.914426 ACAGTTTGGTGACTTGAGTCT 57.086 42.857 12.00 0.00 44.99 3.24
628 990 4.439057 TGTACAGTTTGGTGACTTGAGTC 58.561 43.478 4.20 4.20 44.97 3.36
629 991 4.442706 CTGTACAGTTTGGTGACTTGAGT 58.557 43.478 15.06 0.00 0.00 3.41
630 992 3.248602 GCTGTACAGTTTGGTGACTTGAG 59.751 47.826 23.44 0.00 0.00 3.02
631 993 3.202906 GCTGTACAGTTTGGTGACTTGA 58.797 45.455 23.44 0.00 0.00 3.02
632 994 2.942376 TGCTGTACAGTTTGGTGACTTG 59.058 45.455 23.44 0.00 0.00 3.16
633 995 2.943033 GTGCTGTACAGTTTGGTGACTT 59.057 45.455 23.44 0.00 0.00 3.01
634 996 2.170607 AGTGCTGTACAGTTTGGTGACT 59.829 45.455 23.44 11.12 0.00 3.41
635 997 2.561569 AGTGCTGTACAGTTTGGTGAC 58.438 47.619 23.44 5.42 0.00 3.67
636 998 4.377021 CTTAGTGCTGTACAGTTTGGTGA 58.623 43.478 23.44 4.43 32.79 4.02
637 999 3.058914 GCTTAGTGCTGTACAGTTTGGTG 60.059 47.826 23.44 11.54 38.95 4.17
638 1000 3.139077 GCTTAGTGCTGTACAGTTTGGT 58.861 45.455 23.44 7.51 38.95 3.67
639 1001 3.138304 TGCTTAGTGCTGTACAGTTTGG 58.862 45.455 23.44 10.56 43.37 3.28
640 1002 4.811555 TTGCTTAGTGCTGTACAGTTTG 57.188 40.909 23.44 9.66 43.37 2.93
641 1003 4.821805 ACATTGCTTAGTGCTGTACAGTTT 59.178 37.500 23.44 11.96 43.37 2.66
642 1004 4.214119 CACATTGCTTAGTGCTGTACAGTT 59.786 41.667 23.44 12.29 43.37 3.16
643 1005 3.748048 CACATTGCTTAGTGCTGTACAGT 59.252 43.478 23.44 7.20 43.37 3.55
644 1006 3.748048 ACACATTGCTTAGTGCTGTACAG 59.252 43.478 18.93 18.93 43.37 2.74
645 1007 3.738982 ACACATTGCTTAGTGCTGTACA 58.261 40.909 0.00 0.00 43.37 2.90
646 1008 5.856126 TTACACATTGCTTAGTGCTGTAC 57.144 39.130 0.00 0.00 43.37 2.90
647 1009 6.869315 TTTTACACATTGCTTAGTGCTGTA 57.131 33.333 0.00 0.00 43.37 2.74
648 1010 5.766150 TTTTACACATTGCTTAGTGCTGT 57.234 34.783 0.00 0.00 43.37 4.40
674 1044 1.949525 GTGTGCACTGTGGAGACATTT 59.050 47.619 21.60 0.00 46.14 2.32
680 1050 0.877071 GATTGGTGTGCACTGTGGAG 59.123 55.000 19.41 0.00 0.00 3.86
699 1069 6.431234 ACATTTTCTTAGCCTAACACTCAAGG 59.569 38.462 0.00 0.00 35.86 3.61
708 1078 6.539173 TCAAGGTCACATTTTCTTAGCCTAA 58.461 36.000 0.00 0.00 0.00 2.69
767 1137 4.571984 GTGCTTTCATCTGCTTTTGGTTTT 59.428 37.500 0.00 0.00 0.00 2.43
792 1162 2.238144 TCCTTTCTTCCATGCCTCTCTG 59.762 50.000 0.00 0.00 0.00 3.35
799 1169 3.515330 CATGGTTCCTTTCTTCCATGC 57.485 47.619 9.54 0.00 46.55 4.06
838 1208 5.804639 AGAATGGTATTTTTCCTTTTGCCC 58.195 37.500 0.00 0.00 0.00 5.36
873 1245 0.961019 TGGCATCAAGGTTGCTTGAC 59.039 50.000 0.00 0.00 44.79 3.18
885 1257 0.459411 CATGGACGTACGTGGCATCA 60.459 55.000 28.16 15.25 0.00 3.07
898 1270 2.102578 CAAGGGTTGGAATCCATGGAC 58.897 52.381 18.99 5.01 31.53 4.02
899 1271 2.530460 CAAGGGTTGGAATCCATGGA 57.470 50.000 18.88 18.88 31.53 3.41
938 1315 0.445043 GCGATGGTTACGTGTTTCCC 59.555 55.000 0.00 0.00 0.00 3.97
939 1316 0.445043 GGCGATGGTTACGTGTTTCC 59.555 55.000 0.00 0.00 0.00 3.13
1389 1780 1.283321 GGAGGAGGAGGCACTGAAAAT 59.717 52.381 0.00 0.00 41.55 1.82
1391 1782 0.473694 TGGAGGAGGAGGCACTGAAA 60.474 55.000 0.00 0.00 41.55 2.69
1563 1957 0.392193 CGAATGCAGTGGGCTTCTCT 60.392 55.000 0.00 0.00 45.15 3.10
1725 2131 4.012895 CGTGATATTGGCGGCGGC 62.013 66.667 27.76 27.76 38.90 6.53
1821 2227 2.360600 GGCAATGGTACCGGTGCA 60.361 61.111 30.17 10.88 38.78 4.57
1829 2235 2.507547 GACGCGACGGCAATGGTA 60.508 61.111 15.93 0.00 39.92 3.25
1868 2274 1.857364 GGTAACCGTGCACGTTCAG 59.143 57.895 34.81 22.81 37.74 3.02
1894 2300 2.124693 GTGGTGGTGGTGGTGGTTG 61.125 63.158 0.00 0.00 0.00 3.77
1895 2301 2.277404 GTGGTGGTGGTGGTGGTT 59.723 61.111 0.00 0.00 0.00 3.67
1929 2810 2.031944 GTCGAAGAAAGTTGGCTTCACC 60.032 50.000 15.18 5.02 40.31 4.02
1930 2811 2.031944 GGTCGAAGAAAGTTGGCTTCAC 60.032 50.000 15.18 12.27 40.31 3.18
1931 2812 2.218603 GGTCGAAGAAAGTTGGCTTCA 58.781 47.619 15.18 4.34 40.31 3.02
1938 2822 2.879026 GAGCTTTGGGTCGAAGAAAGTT 59.121 45.455 11.58 7.27 39.69 2.66
2004 2888 2.171003 GGCTTTGTTAATGTGGGCTCT 58.829 47.619 0.00 0.00 0.00 4.09
2138 3022 0.240411 CTTTGGCTGAAGCAGAGTGC 59.760 55.000 4.43 0.00 45.46 4.40
2154 3038 2.397413 CTGACAGCGGGGGTGACTTT 62.397 60.000 1.38 0.00 34.87 2.66
2184 3068 1.735973 CGATGGAGATGAGACGCCA 59.264 57.895 0.00 0.00 43.13 5.69
2219 3103 2.549198 CGATGACTAGGCGGCCGTA 61.549 63.158 28.70 11.44 0.00 4.02
2248 3141 2.897969 TCTTCTTCGTCCTAGCCTTTGT 59.102 45.455 0.00 0.00 0.00 2.83
2256 3149 2.479730 GCGATGCTTCTTCTTCGTCCTA 60.480 50.000 0.00 0.00 36.43 2.94
2304 3197 1.601419 CCTCCAGCAATGGCAACCTG 61.601 60.000 0.00 0.00 44.61 4.00
2330 3223 3.584406 TCTTCTTCTCCTCTTGCTTCG 57.416 47.619 0.00 0.00 0.00 3.79
2511 3404 2.509336 GACAGCACGATCCCCACG 60.509 66.667 0.00 0.00 0.00 4.94
2522 3415 2.515757 TGCGCCAAACTGACAGCA 60.516 55.556 4.18 0.00 0.00 4.41
2578 3471 9.098355 GATAATTAACAGTGCACTCATTAGTCA 57.902 33.333 18.64 2.38 31.97 3.41
2580 3473 9.102757 CAGATAATTAACAGTGCACTCATTAGT 57.897 33.333 18.64 12.39 35.91 2.24
2632 3682 9.153952 GCATGTGTTATTTACATTGTACGTATG 57.846 33.333 0.00 0.00 39.39 2.39
2636 3690 8.613613 ATTGCATGTGTTATTTACATTGTACG 57.386 30.769 0.00 0.00 39.39 3.67
2722 3784 3.963428 TTCTTTACAGAGGGAGTGCTC 57.037 47.619 0.00 0.00 0.00 4.26
2723 3785 4.917906 ATTTCTTTACAGAGGGAGTGCT 57.082 40.909 0.00 0.00 0.00 4.40
2724 3786 8.204836 TCTTATATTTCTTTACAGAGGGAGTGC 58.795 37.037 0.00 0.00 0.00 4.40
2725 3787 9.757227 CTCTTATATTTCTTTACAGAGGGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
2761 3826 9.250624 GAGCGTTTAGATCAATACTTTAGTGAT 57.749 33.333 0.00 0.00 45.10 3.06
2762 3827 8.467598 AGAGCGTTTAGATCAATACTTTAGTGA 58.532 33.333 0.00 0.00 37.82 3.41
2784 3849 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2795 3860 7.015877 TGCTAAAAAGTACTCCCTCTGTAAAGA 59.984 37.037 0.00 0.00 0.00 2.52
2796 3861 7.159372 TGCTAAAAAGTACTCCCTCTGTAAAG 58.841 38.462 0.00 0.00 0.00 1.85
2813 3878 0.960364 CGGCTGGCCTCTGCTAAAAA 60.960 55.000 3.32 0.00 37.86 1.94
2814 3879 1.377202 CGGCTGGCCTCTGCTAAAA 60.377 57.895 3.32 0.00 37.86 1.52
2815 3880 1.261938 TACGGCTGGCCTCTGCTAAA 61.262 55.000 3.32 0.00 37.86 1.85
2816 3881 1.684391 TACGGCTGGCCTCTGCTAA 60.684 57.895 3.32 0.00 37.86 3.09
2817 3882 2.043349 TACGGCTGGCCTCTGCTA 60.043 61.111 3.32 0.00 37.86 3.49
2818 3883 3.775654 GTACGGCTGGCCTCTGCT 61.776 66.667 3.32 0.00 37.86 4.24
2822 3887 2.638330 TTATGCGTACGGCTGGCCTC 62.638 60.000 18.39 0.00 44.05 4.70
2827 3892 3.861113 TCTAAACTTTATGCGTACGGCTG 59.139 43.478 18.39 0.00 44.05 4.85
2853 3918 6.391227 AACCAACCTTGAGACAGTTTAATG 57.609 37.500 0.00 0.00 0.00 1.90
2867 4034 7.962441 AGCATTTAAAACTCATAACCAACCTT 58.038 30.769 0.00 0.00 0.00 3.50
2899 4066 1.754803 CATGAGCAAGGCCAATCACAT 59.245 47.619 5.01 1.94 0.00 3.21
2901 4068 1.180029 ACATGAGCAAGGCCAATCAC 58.820 50.000 5.01 0.00 0.00 3.06
3022 5842 6.940714 TGAAGTTTTAGCTTTGTCGTAAGTC 58.059 36.000 0.00 0.00 39.48 3.01
3041 5861 7.004086 TCCCTCATTTTCACATTAACTGAAGT 58.996 34.615 0.00 0.00 0.00 3.01
3053 5873 3.604875 TCGGTACTCCCTCATTTTCAC 57.395 47.619 0.00 0.00 0.00 3.18
3057 5877 3.886123 CCATTTCGGTACTCCCTCATTT 58.114 45.455 0.00 0.00 0.00 2.32
3062 5882 0.974010 TCGCCATTTCGGTACTCCCT 60.974 55.000 0.00 0.00 36.97 4.20
3072 5892 3.064134 GCTAGTCTTTTCCTCGCCATTTC 59.936 47.826 0.00 0.00 0.00 2.17
3080 5900 5.279256 CCATAGCCTAGCTAGTCTTTTCCTC 60.279 48.000 19.31 0.00 44.66 3.71
3104 5924 0.036765 TTGTACATGACTGGGGCGAC 60.037 55.000 0.00 0.00 0.00 5.19
3105 5925 0.249120 CTTGTACATGACTGGGGCGA 59.751 55.000 0.00 0.00 0.00 5.54
3106 5926 0.744414 CCTTGTACATGACTGGGGCG 60.744 60.000 10.20 0.00 0.00 6.13
3107 5927 0.618458 TCCTTGTACATGACTGGGGC 59.382 55.000 10.20 0.00 0.00 5.80
3108 5928 1.628340 TGTCCTTGTACATGACTGGGG 59.372 52.381 20.41 0.00 0.00 4.96
3109 5929 3.007940 TCTTGTCCTTGTACATGACTGGG 59.992 47.826 20.41 13.10 30.93 4.45
3110 5930 4.271696 TCTTGTCCTTGTACATGACTGG 57.728 45.455 20.41 14.76 30.93 4.00
3111 5931 5.934043 TGATTCTTGTCCTTGTACATGACTG 59.066 40.000 20.41 15.05 34.40 3.51
3112 5932 5.934625 GTGATTCTTGTCCTTGTACATGACT 59.065 40.000 20.41 6.19 34.40 3.41
3113 5933 5.700832 TGTGATTCTTGTCCTTGTACATGAC 59.299 40.000 15.57 15.57 34.40 3.06
3114 5934 5.700832 GTGTGATTCTTGTCCTTGTACATGA 59.299 40.000 10.20 1.08 33.23 3.07
3140 5960 1.336755 GTGACCCCAACACAATGTCAC 59.663 52.381 5.46 5.46 46.02 3.67
3156 5976 3.945285 CCCCAGGTACATACATTTGTGAC 59.055 47.826 0.00 0.00 0.00 3.67
3157 5977 3.589735 ACCCCAGGTACATACATTTGTGA 59.410 43.478 0.00 0.00 32.11 3.58
3170 6017 3.911260 TGTCTAAATTGTGACCCCAGGTA 59.089 43.478 8.13 0.00 35.25 3.08
3172 6019 3.433306 TGTCTAAATTGTGACCCCAGG 57.567 47.619 8.13 0.00 32.67 4.45
3173 6020 5.278957 CCTTTTGTCTAAATTGTGACCCCAG 60.279 44.000 8.13 2.88 32.67 4.45
3197 6044 7.112528 TGTTACATACGTGATTCAGTTTGTC 57.887 36.000 0.00 4.86 35.04 3.18
3295 6151 5.514274 TTCATGTTCTTCTTGGTTTGGTC 57.486 39.130 0.00 0.00 0.00 4.02
3308 6164 7.168219 TGGCTTTACATAGAGTTTCATGTTCT 58.832 34.615 0.00 0.00 36.74 3.01
3324 6180 2.436417 GTTGCTCAGGATGGCTTTACA 58.564 47.619 0.00 0.00 36.16 2.41
3326 6182 1.340991 GGGTTGCTCAGGATGGCTTTA 60.341 52.381 0.00 0.00 36.16 1.85
3337 6193 1.676635 GATGCTGCTGGGTTGCTCA 60.677 57.895 0.00 0.00 0.00 4.26
3364 6220 3.373748 TCAGTACATTTGCCGTGCATAAG 59.626 43.478 0.00 0.00 38.76 1.73
3374 6230 7.698130 GTGATTTGTCCTATTCAGTACATTTGC 59.302 37.037 0.00 0.00 0.00 3.68
3384 6240 7.665145 TGATGTTCTTGTGATTTGTCCTATTCA 59.335 33.333 0.00 0.00 0.00 2.57
3385 6241 7.965107 GTGATGTTCTTGTGATTTGTCCTATTC 59.035 37.037 0.00 0.00 0.00 1.75
3412 6269 2.236644 TGGGCACATCCATCCAATTTTG 59.763 45.455 0.00 0.00 36.21 2.44
3413 6270 2.549082 TGGGCACATCCATCCAATTTT 58.451 42.857 0.00 0.00 36.21 1.82
3418 6275 0.928505 ATCTTGGGCACATCCATCCA 59.071 50.000 0.00 0.00 36.58 3.41
3424 6281 4.223800 TGCGATCTTGGGCACATC 57.776 55.556 0.00 0.00 33.52 3.06
3429 6286 0.745845 AGTGATGTGCGATCTTGGGC 60.746 55.000 0.00 0.00 0.00 5.36
3452 6309 6.819284 TGATTCCTGTTCAAGCTTGATTTTT 58.181 32.000 28.89 10.98 37.00 1.94
3453 6310 6.409524 TGATTCCTGTTCAAGCTTGATTTT 57.590 33.333 28.89 10.47 37.00 1.82
3454 6311 6.218746 GTTGATTCCTGTTCAAGCTTGATTT 58.781 36.000 28.89 9.48 37.00 2.17
3455 6312 5.279156 GGTTGATTCCTGTTCAAGCTTGATT 60.279 40.000 28.89 8.82 44.29 2.57
3456 6313 4.219288 GGTTGATTCCTGTTCAAGCTTGAT 59.781 41.667 28.89 12.93 44.29 2.57
3457 6314 3.569701 GGTTGATTCCTGTTCAAGCTTGA 59.430 43.478 25.16 25.16 44.29 3.02
3458 6315 3.305608 GGGTTGATTCCTGTTCAAGCTTG 60.306 47.826 20.81 20.81 45.98 4.01
3459 6316 2.893489 GGGTTGATTCCTGTTCAAGCTT 59.107 45.455 13.32 0.00 45.98 3.74
3460 6317 2.519013 GGGTTGATTCCTGTTCAAGCT 58.481 47.619 13.32 0.00 45.98 3.74
3461 6318 1.546029 GGGGTTGATTCCTGTTCAAGC 59.454 52.381 6.98 6.98 45.99 4.01
3462 6319 2.875296 TGGGGTTGATTCCTGTTCAAG 58.125 47.619 0.00 0.00 33.95 3.02
3463 6320 2.962421 GTTGGGGTTGATTCCTGTTCAA 59.038 45.455 0.00 0.00 0.00 2.69
3464 6321 2.176798 AGTTGGGGTTGATTCCTGTTCA 59.823 45.455 0.00 0.00 0.00 3.18
3465 6322 2.876581 AGTTGGGGTTGATTCCTGTTC 58.123 47.619 0.00 0.00 0.00 3.18
3466 6323 2.965147 CAAGTTGGGGTTGATTCCTGTT 59.035 45.455 0.00 0.00 0.00 3.16
3467 6324 2.597455 CAAGTTGGGGTTGATTCCTGT 58.403 47.619 0.00 0.00 0.00 4.00
3468 6325 1.273327 GCAAGTTGGGGTTGATTCCTG 59.727 52.381 4.75 0.00 0.00 3.86
3469 6326 1.133199 TGCAAGTTGGGGTTGATTCCT 60.133 47.619 4.75 0.00 0.00 3.36
3470 6327 1.000843 GTGCAAGTTGGGGTTGATTCC 59.999 52.381 4.75 0.00 0.00 3.01
3471 6328 1.686052 TGTGCAAGTTGGGGTTGATTC 59.314 47.619 4.75 0.00 0.00 2.52
3472 6329 1.786937 TGTGCAAGTTGGGGTTGATT 58.213 45.000 4.75 0.00 0.00 2.57
3473 6330 1.688197 CTTGTGCAAGTTGGGGTTGAT 59.312 47.619 4.75 0.00 33.87 2.57
3474 6331 1.110442 CTTGTGCAAGTTGGGGTTGA 58.890 50.000 4.75 0.00 33.87 3.18
3475 6332 3.665544 CTTGTGCAAGTTGGGGTTG 57.334 52.632 4.75 0.00 33.87 3.77
3486 6343 1.605232 CAGTTGCAGATCACTTGTGCA 59.395 47.619 2.67 2.67 45.30 4.57
3487 6344 1.665161 GCAGTTGCAGATCACTTGTGC 60.665 52.381 0.00 0.00 41.59 4.57
3488 6345 2.327081 GCAGTTGCAGATCACTTGTG 57.673 50.000 0.00 0.00 41.59 3.33
3500 6357 5.505173 AATATAGGTGATGTTGCAGTTGC 57.495 39.130 0.00 0.00 42.50 4.17
3501 6358 6.460123 GGGAAATATAGGTGATGTTGCAGTTG 60.460 42.308 0.00 0.00 0.00 3.16
3502 6359 5.594317 GGGAAATATAGGTGATGTTGCAGTT 59.406 40.000 0.00 0.00 0.00 3.16
3503 6360 5.103940 AGGGAAATATAGGTGATGTTGCAGT 60.104 40.000 0.00 0.00 0.00 4.40
3504 6361 5.240183 CAGGGAAATATAGGTGATGTTGCAG 59.760 44.000 0.00 0.00 0.00 4.41
3505 6362 5.132502 CAGGGAAATATAGGTGATGTTGCA 58.867 41.667 0.00 0.00 0.00 4.08
3506 6363 4.520492 CCAGGGAAATATAGGTGATGTTGC 59.480 45.833 0.00 0.00 0.00 4.17
3507 6364 5.694995 ACCAGGGAAATATAGGTGATGTTG 58.305 41.667 0.00 0.00 0.00 3.33
3508 6365 5.994416 ACCAGGGAAATATAGGTGATGTT 57.006 39.130 0.00 0.00 0.00 2.71
3509 6366 5.163088 GGAACCAGGGAAATATAGGTGATGT 60.163 44.000 0.00 0.00 31.86 3.06
3510 6367 5.163099 TGGAACCAGGGAAATATAGGTGATG 60.163 44.000 0.00 0.00 31.86 3.07
3511 6368 4.981647 TGGAACCAGGGAAATATAGGTGAT 59.018 41.667 0.00 0.00 31.86 3.06
3512 6369 4.376223 TGGAACCAGGGAAATATAGGTGA 58.624 43.478 0.00 0.00 31.86 4.02
3513 6370 4.718961 CTGGAACCAGGGAAATATAGGTG 58.281 47.826 12.54 0.00 40.17 4.00
3527 6384 0.105964 CCACTTGTCGACTGGAACCA 59.894 55.000 17.92 0.00 0.00 3.67
3528 6385 1.228657 GCCACTTGTCGACTGGAACC 61.229 60.000 22.65 4.94 0.00 3.62
3529 6386 0.531974 TGCCACTTGTCGACTGGAAC 60.532 55.000 22.65 9.09 0.00 3.62
3530 6387 0.396435 ATGCCACTTGTCGACTGGAA 59.604 50.000 22.65 14.81 0.00 3.53
3531 6388 0.396435 AATGCCACTTGTCGACTGGA 59.604 50.000 22.65 10.48 0.00 3.86
3532 6389 1.732259 GTAATGCCACTTGTCGACTGG 59.268 52.381 17.92 16.84 0.00 4.00
3533 6390 2.412870 TGTAATGCCACTTGTCGACTG 58.587 47.619 17.92 11.96 0.00 3.51
3534 6391 2.831685 TGTAATGCCACTTGTCGACT 57.168 45.000 17.92 0.00 0.00 4.18
3535 6392 3.000041 TGATGTAATGCCACTTGTCGAC 59.000 45.455 9.11 9.11 0.00 4.20
3536 6393 3.326836 TGATGTAATGCCACTTGTCGA 57.673 42.857 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.