Multiple sequence alignment - TraesCS5B01G020700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G020700 chr5B 100.000 2910 0 0 1 2910 20012888 20015797 0.000000e+00 5374.0
1 TraesCS5B01G020700 chr5B 94.007 1068 58 4 917 1981 20671838 20670774 0.000000e+00 1613.0
2 TraesCS5B01G020700 chr5B 94.007 1068 58 4 917 1981 20688048 20686984 0.000000e+00 1613.0
3 TraesCS5B01G020700 chr5B 94.567 497 24 3 1 495 20672957 20672462 0.000000e+00 765.0
4 TraesCS5B01G020700 chr5B 94.567 497 24 3 1 495 20689167 20688672 0.000000e+00 765.0
5 TraesCS5B01G020700 chr5B 88.235 544 60 3 1439 1981 20073332 20073872 0.000000e+00 647.0
6 TraesCS5B01G020700 chr5B 87.976 499 53 4 2 494 20065657 20066154 1.500000e-162 582.0
7 TraesCS5B01G020700 chr5B 87.736 424 52 0 1468 1891 20048144 20048567 2.010000e-136 496.0
8 TraesCS5B01G020700 chr5B 85.481 489 54 4 1 484 20035654 20036130 7.240000e-136 494.0
9 TraesCS5B01G020700 chr5B 87.383 428 54 0 1468 1895 20049006 20049433 2.610000e-135 492.0
10 TraesCS5B01G020700 chr5B 92.836 335 23 1 2576 2910 107335182 107334849 4.360000e-133 484.0
11 TraesCS5B01G020700 chr5B 94.488 254 10 1 922 1171 20036761 20037014 3.520000e-104 388.0
12 TraesCS5B01G020700 chr5B 92.430 251 19 0 921 1171 20072243 20072493 2.760000e-95 359.0
13 TraesCS5B01G020700 chr5B 97.810 137 3 0 769 905 20672071 20671935 1.350000e-58 237.0
14 TraesCS5B01G020700 chr5B 97.810 137 3 0 769 905 20688281 20688145 1.350000e-58 237.0
15 TraesCS5B01G020700 chr5B 89.119 193 18 3 994 1186 684383955 684384144 1.350000e-58 237.0
16 TraesCS5B01G020700 chr5B 91.919 99 4 4 490 586 198272541 198272637 5.060000e-28 135.0
17 TraesCS5B01G020700 chr5B 92.553 94 5 2 493 585 218214350 218214442 1.820000e-27 134.0
18 TraesCS5B01G020700 chr5B 84.496 129 15 5 1234 1359 20072593 20072719 3.940000e-24 122.0
19 TraesCS5B01G020700 chr5B 93.617 47 2 1 860 905 20036630 20036676 5.200000e-08 69.4
20 TraesCS5B01G020700 chr5D 90.293 1401 82 21 1233 2582 27690552 27689155 0.000000e+00 1784.0
21 TraesCS5B01G020700 chr5D 94.960 496 23 2 1 494 27691786 27691291 0.000000e+00 776.0
22 TraesCS5B01G020700 chr5D 86.573 499 50 4 1 494 27682302 27681816 4.270000e-148 534.0
23 TraesCS5B01G020700 chr5D 92.763 304 18 2 921 1224 27690906 27690607 1.240000e-118 436.0
24 TraesCS5B01G020700 chr5D 81.301 369 41 16 2129 2472 339531832 339531467 1.030000e-69 274.0
25 TraesCS5B01G020700 chr5D 79.834 362 43 21 2129 2472 344937073 344937422 1.350000e-58 237.0
26 TraesCS5B01G020700 chr5D 82.796 279 18 9 632 905 27691253 27691000 3.770000e-54 222.0
27 TraesCS5B01G020700 chr5D 90.000 60 5 1 846 905 27681338 27681280 3.110000e-10 76.8
28 TraesCS5B01G020700 chr5A 89.444 1402 95 19 1233 2582 18949886 18948486 0.000000e+00 1720.0
29 TraesCS5B01G020700 chr5A 85.856 806 94 16 1325 2127 18915825 18915037 0.000000e+00 839.0
30 TraesCS5B01G020700 chr5A 91.816 501 34 4 1 494 18951168 18950668 0.000000e+00 691.0
31 TraesCS5B01G020700 chr5A 89.320 515 51 3 1439 1952 18919687 18919176 0.000000e+00 643.0
32 TraesCS5B01G020700 chr5A 89.441 322 19 7 917 1224 18950258 18949938 2.720000e-105 392.0
33 TraesCS5B01G020700 chr5A 85.054 368 29 11 2129 2472 27690924 27690559 4.610000e-93 351.0
34 TraesCS5B01G020700 chr5A 85.294 340 21 12 575 905 18950669 18950350 1.010000e-84 324.0
35 TraesCS5B01G020700 chr5A 81.553 412 50 22 971 1361 18920527 18920121 1.680000e-82 316.0
36 TraesCS5B01G020700 chr5A 81.627 381 35 11 2129 2484 671207760 671207390 1.710000e-72 283.0
37 TraesCS5B01G020700 chr5A 78.151 119 23 3 1044 1159 475310705 475310587 4.020000e-09 73.1
38 TraesCS5B01G020700 chr6B 91.463 328 27 1 2583 2910 298794855 298794529 1.590000e-122 449.0
39 TraesCS5B01G020700 chr6B 83.881 335 54 0 2576 2910 38026805 38026471 1.300000e-83 320.0
40 TraesCS5B01G020700 chr6B 80.675 326 38 13 2129 2430 132409449 132409125 2.260000e-56 230.0
41 TraesCS5B01G020700 chr7B 89.254 335 35 1 2576 2910 690263940 690264273 4.490000e-113 418.0
42 TraesCS5B01G020700 chr1B 87.952 332 40 0 2579 2910 130370208 130369877 2.720000e-105 392.0
43 TraesCS5B01G020700 chr1B 85.672 335 48 0 2576 2910 70489638 70489304 1.280000e-93 353.0
44 TraesCS5B01G020700 chr1B 95.604 91 3 1 489 578 388797807 388797897 8.400000e-31 145.0
45 TraesCS5B01G020700 chr1B 89.286 112 7 5 484 593 475170668 475170776 5.060000e-28 135.0
46 TraesCS5B01G020700 chr1B 89.524 105 7 4 484 586 184645191 184645293 2.350000e-26 130.0
47 TraesCS5B01G020700 chr1B 89.320 103 5 5 2132 2230 630246435 630246335 1.090000e-24 124.0
48 TraesCS5B01G020700 chr2B 84.636 371 32 11 2129 2475 785250658 785250289 2.150000e-91 346.0
49 TraesCS5B01G020700 chr2B 84.962 133 14 6 454 584 55859833 55859705 2.350000e-26 130.0
50 TraesCS5B01G020700 chr2B 88.571 105 7 4 2129 2230 697672328 697672226 3.940000e-24 122.0
51 TraesCS5B01G020700 chr4B 88.256 281 32 1 2578 2858 401144148 401143869 4.650000e-88 335.0
52 TraesCS5B01G020700 chr4B 91.667 96 4 4 493 586 136995724 136995631 2.350000e-26 130.0
53 TraesCS5B01G020700 chr4B 91.667 96 4 4 493 586 163471898 163471805 2.350000e-26 130.0
54 TraesCS5B01G020700 chr4B 91.667 96 4 4 493 586 436755558 436755465 2.350000e-26 130.0
55 TraesCS5B01G020700 chr7A 82.461 382 37 13 2124 2479 498321632 498321255 1.010000e-79 307.0
56 TraesCS5B01G020700 chr7D 83.232 328 51 2 2584 2908 445304062 445304388 6.100000e-77 298.0
57 TraesCS5B01G020700 chr3B 81.155 329 60 2 2583 2910 395345041 395345368 2.220000e-66 263.0
58 TraesCS5B01G020700 chr6A 80.654 367 45 13 2131 2472 398184689 398185054 8.000000e-66 261.0
59 TraesCS5B01G020700 chr6A 83.636 165 22 5 2331 2491 579161475 579161312 1.810000e-32 150.0
60 TraesCS5B01G020700 chr2D 84.074 270 35 7 2218 2484 112304895 112305159 1.340000e-63 254.0
61 TraesCS5B01G020700 chr3A 79.399 233 21 9 2124 2332 742046202 742045973 3.910000e-29 139.0
62 TraesCS5B01G020700 chr3D 86.726 113 9 5 2121 2230 3044301 3044192 1.420000e-23 121.0
63 TraesCS5B01G020700 chr1A 79.121 91 17 2 1001 1090 61713673 61713762 8.710000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G020700 chr5B 20012888 20015797 2909 False 5374.000000 5374 100.000000 1 2910 1 chr5B.!!$F1 2909
1 TraesCS5B01G020700 chr5B 20670774 20672957 2183 True 871.666667 1613 95.461333 1 1981 3 chr5B.!!$R2 1980
2 TraesCS5B01G020700 chr5B 20686984 20689167 2183 True 871.666667 1613 95.461333 1 1981 3 chr5B.!!$R3 1980
3 TraesCS5B01G020700 chr5B 20048144 20049433 1289 False 494.000000 496 87.559500 1468 1895 2 chr5B.!!$F7 427
4 TraesCS5B01G020700 chr5B 20072243 20073872 1629 False 376.000000 647 88.387000 921 1981 3 chr5B.!!$F8 1060
5 TraesCS5B01G020700 chr5B 20035654 20037014 1360 False 317.133333 494 91.195333 1 1171 3 chr5B.!!$F6 1170
6 TraesCS5B01G020700 chr5D 27689155 27691786 2631 True 804.500000 1784 90.203000 1 2582 4 chr5D.!!$R3 2581
7 TraesCS5B01G020700 chr5D 27681280 27682302 1022 True 305.400000 534 88.286500 1 905 2 chr5D.!!$R2 904
8 TraesCS5B01G020700 chr5A 18948486 18951168 2682 True 781.750000 1720 88.998750 1 2582 4 chr5A.!!$R5 2581
9 TraesCS5B01G020700 chr5A 18915037 18920527 5490 True 599.333333 839 85.576333 971 2127 3 chr5A.!!$R4 1156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 1.026718 CGGCCAACATGAGAAGGACC 61.027 60.0 2.24 1.12 0.0 4.46 F
1582 6883 0.742505 CCGTACTCAAGCCCATCGTA 59.257 55.0 0.00 0.00 0.0 3.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 6955 0.324285 CCTCCAGCAGCTTCTTCAGT 59.676 55.0 0.0 0.0 0.00 3.41 R
2827 8158 0.034380 GGTTAGCCTCCCAACCCTTC 60.034 60.0 0.0 0.0 38.63 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 4.322049 GCTCTGGTAGTGCTTTCTCAACTA 60.322 45.833 0.00 0.00 32.42 2.24
214 215 1.110442 CCTTGCAGGTTGTTTCCACA 58.890 50.000 0.00 0.00 0.00 4.17
247 248 1.026718 CGGCCAACATGAGAAGGACC 61.027 60.000 2.24 1.12 0.00 4.46
362 369 2.286184 CGCCGCACAATACTATTTGGAC 60.286 50.000 0.00 0.00 0.00 4.02
373 381 7.834181 ACAATACTATTTGGACAAAGCCTACAT 59.166 33.333 3.71 0.00 33.32 2.29
411 423 4.056805 GGCACCCTGAGGATGAGA 57.943 61.111 0.00 0.00 36.73 3.27
501 514 6.990908 TTTAGGCTAGTAATTACTCCCTCC 57.009 41.667 27.95 20.66 38.41 4.30
502 515 3.498334 AGGCTAGTAATTACTCCCTCCG 58.502 50.000 21.25 6.11 34.84 4.63
504 517 3.255395 GGCTAGTAATTACTCCCTCCGTC 59.745 52.174 21.25 3.23 37.73 4.79
505 518 3.255395 GCTAGTAATTACTCCCTCCGTCC 59.745 52.174 21.25 0.00 37.73 4.79
506 519 2.675583 AGTAATTACTCCCTCCGTCCC 58.324 52.381 12.50 0.00 0.00 4.46
508 521 2.191981 AATTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
510 523 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
512 525 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
517 530 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
518 531 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
521 534 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
522 535 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
523 536 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
524 537 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
571 584 3.129988 GTCGTATATTATGGGACGGAGGG 59.870 52.174 0.00 0.00 36.02 4.30
573 586 3.380637 CGTATATTATGGGACGGAGGGAG 59.619 52.174 0.00 0.00 0.00 4.30
662 681 9.529325 AAAAAGGCTTTGAGTTACATAGTTTTC 57.471 29.630 14.19 0.00 31.78 2.29
931 1536 1.893801 ACCGAAGTGCTACTAGTGCTT 59.106 47.619 5.39 4.72 0.00 3.91
1211 1846 5.670485 TCTTTGCTACTTGAGTTCTGTTGA 58.330 37.500 0.00 0.00 0.00 3.18
1220 1855 5.065731 ACTTGAGTTCTGTTGAAAGCAAGAG 59.934 40.000 19.23 0.00 44.38 2.85
1248 1929 2.224209 ACACTACTGTTCCCTTCCAACG 60.224 50.000 0.00 0.00 0.00 4.10
1279 1960 2.298158 CTTCGGTGAGATCCCGGTGG 62.298 65.000 0.00 0.00 45.51 4.61
1326 2007 4.901868 ACCGTAAGCCTTCATGTTTTCTA 58.098 39.130 0.00 0.00 0.00 2.10
1582 6883 0.742505 CCGTACTCAAGCCCATCGTA 59.257 55.000 0.00 0.00 0.00 3.43
1606 6907 1.909700 ACTGCATCATCAACCCGTTT 58.090 45.000 0.00 0.00 0.00 3.60
1609 6910 1.959985 TGCATCATCAACCCGTTTGTT 59.040 42.857 0.00 0.00 36.49 2.83
1624 6925 1.189524 TTGTTGGGAGGGACGTCGAT 61.190 55.000 9.92 0.00 0.00 3.59
1710 7011 3.616219 TGTCAAGCAACAAGTACTTGGT 58.384 40.909 33.11 27.69 44.45 3.67
1885 7186 2.019897 GCATGCCTCCGGATTTTGGG 62.020 60.000 3.57 2.80 0.00 4.12
1891 7192 0.035820 CTCCGGATTTTGGGTTCGGA 60.036 55.000 3.57 0.00 46.06 4.55
1933 7235 1.994779 GGCATATGCTTTGTGTGTTGC 59.005 47.619 26.12 2.18 41.70 4.17
1938 7240 0.737804 TGCTTTGTGTGTTGCGATGT 59.262 45.000 0.00 0.00 0.00 3.06
1953 7255 7.383572 GTGTTGCGATGTTCTAATCATCTCTAT 59.616 37.037 0.00 0.00 39.36 1.98
1983 7285 6.148811 CCCACGAGAAATAAAGTAAGCAAAGA 59.851 38.462 0.00 0.00 0.00 2.52
1988 7290 7.095187 CGAGAAATAAAGTAAGCAAAGAGTGGT 60.095 37.037 0.00 0.00 40.58 4.16
2089 7393 5.957771 TGTCTATGCCCTCTATTTCTGTT 57.042 39.130 0.00 0.00 0.00 3.16
2100 7404 6.043411 CCTCTATTTCTGTTAGCAGTACCAC 58.957 44.000 6.47 0.00 43.05 4.16
2134 7439 5.215160 CCAATGTTGTTGCAAAGTCTCTAC 58.785 41.667 0.00 0.00 0.00 2.59
2135 7440 5.009010 CCAATGTTGTTGCAAAGTCTCTACT 59.991 40.000 0.00 0.00 37.65 2.57
2137 7442 7.255104 CCAATGTTGTTGCAAAGTCTCTACTTA 60.255 37.037 0.00 0.00 45.37 2.24
2322 7652 2.682352 CACAATCGCATACCATGGACAA 59.318 45.455 21.47 3.43 0.00 3.18
2334 7664 7.282224 GCATACCATGGACAAGTAAATCACTTA 59.718 37.037 21.47 0.00 46.04 2.24
2458 7788 0.319986 TATCCTGTTGCAACGCACGA 60.320 50.000 23.79 15.76 38.71 4.35
2503 7834 9.981460 AAAGATATTCTATGTGGTCCTCTTTTT 57.019 29.630 0.00 0.00 28.83 1.94
2551 7882 7.390440 TCACACCCACTTGACATATAAGAAAAG 59.610 37.037 0.00 0.00 0.00 2.27
2576 7907 8.262933 AGGTAGAAACATACTATGTACCAAACC 58.737 37.037 16.33 13.09 44.07 3.27
2577 7908 7.223387 GGTAGAAACATACTATGTACCAAACCG 59.777 40.741 11.66 0.00 44.07 4.44
2578 7909 6.704310 AGAAACATACTATGTACCAAACCGT 58.296 36.000 1.98 0.00 44.07 4.83
2580 7911 6.730960 AACATACTATGTACCAAACCGTTG 57.269 37.500 1.98 0.00 44.07 4.10
2581 7912 5.797051 ACATACTATGTACCAAACCGTTGT 58.203 37.500 0.00 0.00 42.78 3.32
2582 7913 5.870978 ACATACTATGTACCAAACCGTTGTC 59.129 40.000 0.00 0.00 42.78 3.18
2583 7914 3.667360 ACTATGTACCAAACCGTTGTCC 58.333 45.455 0.00 0.00 32.40 4.02
2584 7915 1.900245 ATGTACCAAACCGTTGTCCC 58.100 50.000 0.00 0.00 32.40 4.46
2585 7916 0.179023 TGTACCAAACCGTTGTCCCC 60.179 55.000 0.00 0.00 32.40 4.81
2586 7917 0.109153 GTACCAAACCGTTGTCCCCT 59.891 55.000 0.00 0.00 32.40 4.79
2587 7918 1.347378 GTACCAAACCGTTGTCCCCTA 59.653 52.381 0.00 0.00 32.40 3.53
2588 7919 0.399075 ACCAAACCGTTGTCCCCTAG 59.601 55.000 0.00 0.00 32.40 3.02
2589 7920 0.958876 CCAAACCGTTGTCCCCTAGC 60.959 60.000 0.00 0.00 32.40 3.42
2590 7921 0.036306 CAAACCGTTGTCCCCTAGCT 59.964 55.000 0.00 0.00 0.00 3.32
2591 7922 0.769247 AAACCGTTGTCCCCTAGCTT 59.231 50.000 0.00 0.00 0.00 3.74
2592 7923 0.323957 AACCGTTGTCCCCTAGCTTC 59.676 55.000 0.00 0.00 0.00 3.86
2593 7924 1.221021 CCGTTGTCCCCTAGCTTCC 59.779 63.158 0.00 0.00 0.00 3.46
2594 7925 1.221021 CGTTGTCCCCTAGCTTCCC 59.779 63.158 0.00 0.00 0.00 3.97
2595 7926 1.265454 CGTTGTCCCCTAGCTTCCCT 61.265 60.000 0.00 0.00 0.00 4.20
2596 7927 0.992695 GTTGTCCCCTAGCTTCCCTT 59.007 55.000 0.00 0.00 0.00 3.95
2597 7928 1.065345 GTTGTCCCCTAGCTTCCCTTC 60.065 57.143 0.00 0.00 0.00 3.46
2598 7929 0.976073 TGTCCCCTAGCTTCCCTTCG 60.976 60.000 0.00 0.00 0.00 3.79
2599 7930 2.064581 TCCCCTAGCTTCCCTTCGC 61.065 63.158 0.00 0.00 0.00 4.70
2600 7931 2.107141 CCCTAGCTTCCCTTCGCG 59.893 66.667 0.00 0.00 0.00 5.87
2601 7932 2.586357 CCTAGCTTCCCTTCGCGC 60.586 66.667 0.00 0.00 0.00 6.86
2602 7933 2.586357 CTAGCTTCCCTTCGCGCC 60.586 66.667 0.00 0.00 0.00 6.53
2603 7934 3.371097 CTAGCTTCCCTTCGCGCCA 62.371 63.158 0.00 0.00 0.00 5.69
2604 7935 2.650813 CTAGCTTCCCTTCGCGCCAT 62.651 60.000 0.00 0.00 0.00 4.40
2605 7936 2.644555 TAGCTTCCCTTCGCGCCATC 62.645 60.000 0.00 0.00 0.00 3.51
2606 7937 2.125147 CTTCCCTTCGCGCCATCA 60.125 61.111 0.00 0.00 0.00 3.07
2607 7938 2.435938 TTCCCTTCGCGCCATCAC 60.436 61.111 0.00 0.00 0.00 3.06
2608 7939 3.969250 TTCCCTTCGCGCCATCACC 62.969 63.158 0.00 0.00 0.00 4.02
2611 7942 4.812476 CTTCGCGCCATCACCCGA 62.812 66.667 0.00 0.00 0.00 5.14
2612 7943 4.380781 TTCGCGCCATCACCCGAA 62.381 61.111 0.00 0.00 37.36 4.30
2613 7944 3.673956 TTCGCGCCATCACCCGAAT 62.674 57.895 0.00 0.00 35.12 3.34
2614 7945 3.202001 CGCGCCATCACCCGAATT 61.202 61.111 0.00 0.00 0.00 2.17
2615 7946 2.408835 GCGCCATCACCCGAATTG 59.591 61.111 0.00 0.00 0.00 2.32
2616 7947 3.110139 CGCCATCACCCGAATTGG 58.890 61.111 0.00 0.00 37.55 3.16
2617 7948 2.807622 GCCATCACCCGAATTGGC 59.192 61.111 0.00 0.00 46.94 4.52
2618 7949 4.664062 CCATCACCCGAATTGGCT 57.336 55.556 0.00 0.00 35.87 4.75
2619 7950 2.408333 CCATCACCCGAATTGGCTC 58.592 57.895 0.00 0.00 35.87 4.70
2620 7951 0.107017 CCATCACCCGAATTGGCTCT 60.107 55.000 0.00 0.00 35.87 4.09
2621 7952 1.019673 CATCACCCGAATTGGCTCTG 58.980 55.000 0.00 0.00 35.87 3.35
2622 7953 0.911769 ATCACCCGAATTGGCTCTGA 59.088 50.000 0.00 0.00 35.87 3.27
2623 7954 0.911769 TCACCCGAATTGGCTCTGAT 59.088 50.000 0.00 0.00 35.87 2.90
2624 7955 1.134401 TCACCCGAATTGGCTCTGATC 60.134 52.381 0.00 0.00 35.87 2.92
2625 7956 0.911769 ACCCGAATTGGCTCTGATCA 59.088 50.000 0.00 0.00 35.87 2.92
2626 7957 1.492176 ACCCGAATTGGCTCTGATCAT 59.508 47.619 0.00 0.00 35.87 2.45
2627 7958 1.878088 CCCGAATTGGCTCTGATCATG 59.122 52.381 0.00 0.00 35.87 3.07
2628 7959 2.569059 CCGAATTGGCTCTGATCATGT 58.431 47.619 0.00 0.00 0.00 3.21
2629 7960 2.947652 CCGAATTGGCTCTGATCATGTT 59.052 45.455 0.00 0.00 0.00 2.71
2630 7961 3.003068 CCGAATTGGCTCTGATCATGTTC 59.997 47.826 0.00 0.00 0.00 3.18
2631 7962 3.003068 CGAATTGGCTCTGATCATGTTCC 59.997 47.826 0.00 0.00 0.00 3.62
2632 7963 2.425143 TTGGCTCTGATCATGTTCCC 57.575 50.000 0.00 0.00 0.00 3.97
2633 7964 0.548031 TGGCTCTGATCATGTTCCCC 59.452 55.000 0.00 0.00 0.00 4.81
2634 7965 0.842635 GGCTCTGATCATGTTCCCCT 59.157 55.000 0.00 0.00 0.00 4.79
2635 7966 1.202746 GGCTCTGATCATGTTCCCCTC 60.203 57.143 0.00 0.00 0.00 4.30
2636 7967 1.202746 GCTCTGATCATGTTCCCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
2637 7968 2.406559 CTCTGATCATGTTCCCCTCCT 58.593 52.381 0.00 0.00 0.00 3.69
2638 7969 2.776536 CTCTGATCATGTTCCCCTCCTT 59.223 50.000 0.00 0.00 0.00 3.36
2639 7970 2.774234 TCTGATCATGTTCCCCTCCTTC 59.226 50.000 0.00 0.00 0.00 3.46
2640 7971 2.776536 CTGATCATGTTCCCCTCCTTCT 59.223 50.000 0.00 0.00 0.00 2.85
2641 7972 2.507058 TGATCATGTTCCCCTCCTTCTG 59.493 50.000 0.00 0.00 0.00 3.02
2642 7973 2.044793 TCATGTTCCCCTCCTTCTGT 57.955 50.000 0.00 0.00 0.00 3.41
2643 7974 1.909302 TCATGTTCCCCTCCTTCTGTC 59.091 52.381 0.00 0.00 0.00 3.51
2644 7975 1.065126 CATGTTCCCCTCCTTCTGTCC 60.065 57.143 0.00 0.00 0.00 4.02
2645 7976 0.193574 TGTTCCCCTCCTTCTGTCCT 59.806 55.000 0.00 0.00 0.00 3.85
2646 7977 0.906066 GTTCCCCTCCTTCTGTCCTC 59.094 60.000 0.00 0.00 0.00 3.71
2647 7978 0.252742 TTCCCCTCCTTCTGTCCTCC 60.253 60.000 0.00 0.00 0.00 4.30
2648 7979 2.060980 CCCCTCCTTCTGTCCTCCG 61.061 68.421 0.00 0.00 0.00 4.63
2649 7980 2.726351 CCCTCCTTCTGTCCTCCGC 61.726 68.421 0.00 0.00 0.00 5.54
2650 7981 2.726351 CCTCCTTCTGTCCTCCGCC 61.726 68.421 0.00 0.00 0.00 6.13
2651 7982 3.068691 TCCTTCTGTCCTCCGCCG 61.069 66.667 0.00 0.00 0.00 6.46
2652 7983 3.068691 CCTTCTGTCCTCCGCCGA 61.069 66.667 0.00 0.00 0.00 5.54
2653 7984 2.427245 CCTTCTGTCCTCCGCCGAT 61.427 63.158 0.00 0.00 0.00 4.18
2654 7985 1.227089 CTTCTGTCCTCCGCCGATG 60.227 63.158 0.00 0.00 0.00 3.84
2655 7986 1.667154 CTTCTGTCCTCCGCCGATGA 61.667 60.000 0.00 0.00 0.00 2.92
2656 7987 1.667154 TTCTGTCCTCCGCCGATGAG 61.667 60.000 0.00 0.00 0.00 2.90
2657 7988 3.781770 CTGTCCTCCGCCGATGAGC 62.782 68.421 0.00 0.00 0.00 4.26
2668 7999 2.279517 GATGAGCGGACGCCGATT 60.280 61.111 20.06 8.54 45.97 3.34
2669 8000 1.007734 GATGAGCGGACGCCGATTA 60.008 57.895 20.06 12.11 45.97 1.75
2670 8001 1.276145 GATGAGCGGACGCCGATTAC 61.276 60.000 20.06 5.57 45.97 1.89
2671 8002 2.657620 GAGCGGACGCCGATTACC 60.658 66.667 20.06 4.09 45.97 2.85
2672 8003 4.217159 AGCGGACGCCGATTACCC 62.217 66.667 20.06 3.46 45.97 3.69
2675 8006 2.202974 GGACGCCGATTACCCCAC 60.203 66.667 0.00 0.00 0.00 4.61
2676 8007 2.584143 GACGCCGATTACCCCACG 60.584 66.667 0.00 0.00 0.00 4.94
2677 8008 3.067480 GACGCCGATTACCCCACGA 62.067 63.158 0.00 0.00 0.00 4.35
2678 8009 2.359570 GACGCCGATTACCCCACGAT 62.360 60.000 0.00 0.00 0.00 3.73
2679 8010 1.227438 CGCCGATTACCCCACGATT 60.227 57.895 0.00 0.00 0.00 3.34
2680 8011 1.219522 CGCCGATTACCCCACGATTC 61.220 60.000 0.00 0.00 0.00 2.52
2681 8012 0.883370 GCCGATTACCCCACGATTCC 60.883 60.000 0.00 0.00 0.00 3.01
2682 8013 0.466543 CCGATTACCCCACGATTCCA 59.533 55.000 0.00 0.00 0.00 3.53
2683 8014 1.540363 CCGATTACCCCACGATTCCAG 60.540 57.143 0.00 0.00 0.00 3.86
2684 8015 1.138266 CGATTACCCCACGATTCCAGT 59.862 52.381 0.00 0.00 0.00 4.00
2685 8016 2.419574 CGATTACCCCACGATTCCAGTT 60.420 50.000 0.00 0.00 0.00 3.16
2686 8017 3.617284 GATTACCCCACGATTCCAGTTT 58.383 45.455 0.00 0.00 0.00 2.66
2687 8018 2.483014 TACCCCACGATTCCAGTTTG 57.517 50.000 0.00 0.00 0.00 2.93
2688 8019 0.768622 ACCCCACGATTCCAGTTTGA 59.231 50.000 0.00 0.00 0.00 2.69
2689 8020 1.271379 ACCCCACGATTCCAGTTTGAG 60.271 52.381 0.00 0.00 0.00 3.02
2690 8021 1.003118 CCCCACGATTCCAGTTTGAGA 59.997 52.381 0.00 0.00 0.00 3.27
2691 8022 2.076863 CCCACGATTCCAGTTTGAGAC 58.923 52.381 0.00 0.00 0.00 3.36
2692 8023 2.076863 CCACGATTCCAGTTTGAGACC 58.923 52.381 0.00 0.00 0.00 3.85
2693 8024 2.289694 CCACGATTCCAGTTTGAGACCT 60.290 50.000 0.00 0.00 0.00 3.85
2694 8025 3.403038 CACGATTCCAGTTTGAGACCTT 58.597 45.455 0.00 0.00 0.00 3.50
2695 8026 3.433615 CACGATTCCAGTTTGAGACCTTC 59.566 47.826 0.00 0.00 0.00 3.46
2696 8027 3.325135 ACGATTCCAGTTTGAGACCTTCT 59.675 43.478 0.00 0.00 0.00 2.85
2697 8028 3.681897 CGATTCCAGTTTGAGACCTTCTG 59.318 47.826 0.00 0.00 0.00 3.02
2698 8029 3.492102 TTCCAGTTTGAGACCTTCTGG 57.508 47.619 0.00 0.00 44.69 3.86
2699 8030 1.072331 TCCAGTTTGAGACCTTCTGGC 59.928 52.381 0.00 0.00 43.49 4.85
2700 8031 1.072965 CCAGTTTGAGACCTTCTGGCT 59.927 52.381 0.00 0.00 39.02 4.75
2701 8032 2.149578 CAGTTTGAGACCTTCTGGCTG 58.850 52.381 0.00 0.00 36.63 4.85
2702 8033 1.771255 AGTTTGAGACCTTCTGGCTGT 59.229 47.619 0.00 0.00 36.63 4.40
2703 8034 2.147150 GTTTGAGACCTTCTGGCTGTC 58.853 52.381 0.00 0.00 36.63 3.51
2704 8035 0.687354 TTGAGACCTTCTGGCTGTCC 59.313 55.000 0.00 0.00 36.63 4.02
2705 8036 1.194781 TGAGACCTTCTGGCTGTCCC 61.195 60.000 0.00 0.00 36.63 4.46
2706 8037 1.152030 AGACCTTCTGGCTGTCCCA 60.152 57.895 0.00 0.00 42.79 4.37
2707 8038 0.768221 AGACCTTCTGGCTGTCCCAA 60.768 55.000 0.00 0.00 44.81 4.12
2708 8039 0.110486 GACCTTCTGGCTGTCCCAAA 59.890 55.000 0.00 0.00 44.81 3.28
2709 8040 0.178990 ACCTTCTGGCTGTCCCAAAC 60.179 55.000 0.00 0.00 44.81 2.93
2710 8041 0.895559 CCTTCTGGCTGTCCCAAACC 60.896 60.000 0.00 0.00 44.81 3.27
2711 8042 1.228124 TTCTGGCTGTCCCAAACCG 60.228 57.895 0.00 0.00 44.81 4.44
2712 8043 2.672996 CTGGCTGTCCCAAACCGG 60.673 66.667 0.00 0.00 44.81 5.28
2713 8044 3.491598 CTGGCTGTCCCAAACCGGT 62.492 63.158 0.00 0.00 44.81 5.28
2714 8045 2.203437 GGCTGTCCCAAACCGGTT 60.203 61.111 15.86 15.86 0.00 4.44
2715 8046 1.830847 GGCTGTCCCAAACCGGTTT 60.831 57.895 26.87 26.87 0.00 3.27
2716 8047 1.658114 GCTGTCCCAAACCGGTTTC 59.342 57.895 29.48 18.34 0.00 2.78
2717 8048 1.946267 CTGTCCCAAACCGGTTTCG 59.054 57.895 29.48 22.90 0.00 3.46
2718 8049 0.816421 CTGTCCCAAACCGGTTTCGT 60.816 55.000 29.48 6.93 33.95 3.85
2719 8050 1.096386 TGTCCCAAACCGGTTTCGTG 61.096 55.000 29.48 19.17 33.95 4.35
2720 8051 1.526455 TCCCAAACCGGTTTCGTGG 60.526 57.895 29.48 26.44 32.08 4.94
2721 8052 2.333581 CCAAACCGGTTTCGTGGC 59.666 61.111 29.48 0.00 33.95 5.01
2722 8053 2.051703 CAAACCGGTTTCGTGGCG 60.052 61.111 29.48 13.66 33.95 5.69
2723 8054 3.281395 AAACCGGTTTCGTGGCGG 61.281 61.111 26.87 0.00 33.95 6.13
2728 8059 4.025401 GGTTTCGTGGCGGCTGTG 62.025 66.667 11.43 0.00 0.00 3.66
2729 8060 4.025401 GTTTCGTGGCGGCTGTGG 62.025 66.667 11.43 0.00 0.00 4.17
2750 8081 4.154347 CTCGCTGGGTGGAGGCTC 62.154 72.222 5.78 5.78 0.00 4.70
2771 8102 4.436998 CGCACCCTCACCCTCGTC 62.437 72.222 0.00 0.00 0.00 4.20
2772 8103 4.083862 GCACCCTCACCCTCGTCC 62.084 72.222 0.00 0.00 0.00 4.79
2773 8104 3.391382 CACCCTCACCCTCGTCCC 61.391 72.222 0.00 0.00 0.00 4.46
2774 8105 4.716977 ACCCTCACCCTCGTCCCC 62.717 72.222 0.00 0.00 0.00 4.81
2776 8107 4.400251 CCTCACCCTCGTCCCCCT 62.400 72.222 0.00 0.00 0.00 4.79
2777 8108 2.284699 CTCACCCTCGTCCCCCTT 60.285 66.667 0.00 0.00 0.00 3.95
2778 8109 2.284405 TCACCCTCGTCCCCCTTC 60.284 66.667 0.00 0.00 0.00 3.46
2779 8110 3.771160 CACCCTCGTCCCCCTTCG 61.771 72.222 0.00 0.00 0.00 3.79
2785 8116 4.109675 CGTCCCCCTTCGGCCATT 62.110 66.667 2.24 0.00 0.00 3.16
2786 8117 2.440247 GTCCCCCTTCGGCCATTG 60.440 66.667 2.24 0.00 0.00 2.82
2787 8118 2.612430 TCCCCCTTCGGCCATTGA 60.612 61.111 2.24 0.00 0.00 2.57
2788 8119 2.440247 CCCCCTTCGGCCATTGAC 60.440 66.667 2.24 0.00 0.00 3.18
2789 8120 2.677228 CCCCTTCGGCCATTGACT 59.323 61.111 2.24 0.00 0.00 3.41
2790 8121 1.452108 CCCCTTCGGCCATTGACTC 60.452 63.158 2.24 0.00 0.00 3.36
2791 8122 1.815421 CCCTTCGGCCATTGACTCG 60.815 63.158 2.24 0.00 0.00 4.18
2792 8123 1.079127 CCTTCGGCCATTGACTCGT 60.079 57.895 2.24 0.00 0.00 4.18
2793 8124 1.361668 CCTTCGGCCATTGACTCGTG 61.362 60.000 2.24 0.00 0.00 4.35
2794 8125 1.361668 CTTCGGCCATTGACTCGTGG 61.362 60.000 2.24 0.00 38.55 4.94
2798 8129 4.701663 CCATTGACTCGTGGCACT 57.298 55.556 16.72 0.00 0.00 4.40
2799 8130 2.932663 CCATTGACTCGTGGCACTT 58.067 52.632 16.72 0.00 0.00 3.16
2800 8131 0.798776 CCATTGACTCGTGGCACTTC 59.201 55.000 16.72 9.67 0.00 3.01
2801 8132 1.609061 CCATTGACTCGTGGCACTTCT 60.609 52.381 16.72 0.00 0.00 2.85
2802 8133 1.462283 CATTGACTCGTGGCACTTCTG 59.538 52.381 16.72 5.38 0.00 3.02
2803 8134 0.464036 TTGACTCGTGGCACTTCTGT 59.536 50.000 16.72 8.56 0.00 3.41
2804 8135 0.249447 TGACTCGTGGCACTTCTGTG 60.249 55.000 16.72 3.56 46.37 3.66
2812 8143 3.736483 CACTTCTGTGCCAAGCGT 58.264 55.556 0.00 0.00 37.38 5.07
2813 8144 1.280746 CACTTCTGTGCCAAGCGTG 59.719 57.895 0.00 0.00 37.38 5.34
2822 8153 2.281070 CCAAGCGTGGCTGACAGT 60.281 61.111 5.51 0.00 39.62 3.55
2823 8154 1.893808 CCAAGCGTGGCTGACAGTT 60.894 57.895 5.51 0.00 39.62 3.16
2824 8155 1.571460 CAAGCGTGGCTGACAGTTC 59.429 57.895 3.99 0.00 39.62 3.01
2825 8156 1.146041 AAGCGTGGCTGACAGTTCA 59.854 52.632 3.99 0.53 39.62 3.18
2826 8157 0.250467 AAGCGTGGCTGACAGTTCAT 60.250 50.000 3.99 0.00 39.62 2.57
2827 8158 0.952497 AGCGTGGCTGACAGTTCATG 60.952 55.000 3.99 9.50 37.57 3.07
2828 8159 0.950555 GCGTGGCTGACAGTTCATGA 60.951 55.000 18.11 0.00 0.00 3.07
2829 8160 1.511850 CGTGGCTGACAGTTCATGAA 58.488 50.000 3.38 3.38 0.00 2.57
2830 8161 1.462283 CGTGGCTGACAGTTCATGAAG 59.538 52.381 8.80 0.24 0.00 3.02
2831 8162 1.808945 GTGGCTGACAGTTCATGAAGG 59.191 52.381 8.80 6.94 0.00 3.46
2832 8163 1.271543 TGGCTGACAGTTCATGAAGGG 60.272 52.381 8.80 6.56 0.00 3.95
2833 8164 1.271597 GGCTGACAGTTCATGAAGGGT 60.272 52.381 8.80 9.98 0.00 4.34
2834 8165 2.508526 GCTGACAGTTCATGAAGGGTT 58.491 47.619 8.80 0.00 0.00 4.11
2835 8166 2.227388 GCTGACAGTTCATGAAGGGTTG 59.773 50.000 8.80 7.86 0.00 3.77
2836 8167 2.816087 CTGACAGTTCATGAAGGGTTGG 59.184 50.000 8.80 3.85 0.00 3.77
2837 8168 2.162681 GACAGTTCATGAAGGGTTGGG 58.837 52.381 8.80 0.00 0.00 4.12
2838 8169 1.780309 ACAGTTCATGAAGGGTTGGGA 59.220 47.619 8.80 0.00 0.00 4.37
2839 8170 2.224867 ACAGTTCATGAAGGGTTGGGAG 60.225 50.000 8.80 0.00 0.00 4.30
2840 8171 1.355720 AGTTCATGAAGGGTTGGGAGG 59.644 52.381 8.80 0.00 0.00 4.30
2841 8172 0.039618 TTCATGAAGGGTTGGGAGGC 59.960 55.000 3.38 0.00 0.00 4.70
2842 8173 0.846427 TCATGAAGGGTTGGGAGGCT 60.846 55.000 0.00 0.00 0.00 4.58
2843 8174 0.918983 CATGAAGGGTTGGGAGGCTA 59.081 55.000 0.00 0.00 0.00 3.93
2844 8175 1.284785 CATGAAGGGTTGGGAGGCTAA 59.715 52.381 0.00 0.00 0.00 3.09
2845 8176 0.696501 TGAAGGGTTGGGAGGCTAAC 59.303 55.000 0.00 0.00 0.00 2.34
2846 8177 0.034380 GAAGGGTTGGGAGGCTAACC 60.034 60.000 8.84 8.84 44.38 2.85
2856 8187 4.029472 GGCTAACCTGGGTCGAGA 57.971 61.111 0.00 0.00 0.00 4.04
2857 8188 1.516423 GGCTAACCTGGGTCGAGAC 59.484 63.158 0.00 0.00 0.00 3.36
2868 8199 1.352404 GTCGAGACCTCCACGATCG 59.648 63.158 14.88 14.88 38.27 3.69
2869 8200 2.024871 CGAGACCTCCACGATCGC 59.975 66.667 16.60 0.00 0.00 4.58
2870 8201 2.761195 CGAGACCTCCACGATCGCA 61.761 63.158 16.60 0.00 0.00 5.10
2871 8202 1.511305 GAGACCTCCACGATCGCAA 59.489 57.895 16.60 0.00 0.00 4.85
2872 8203 0.526524 GAGACCTCCACGATCGCAAG 60.527 60.000 16.60 9.90 0.00 4.01
2884 8215 2.956987 CGCAAGAAGGCCCTGTTG 59.043 61.111 6.87 6.87 43.02 3.33
2885 8216 1.898574 CGCAAGAAGGCCCTGTTGT 60.899 57.895 12.47 0.00 43.02 3.32
2886 8217 1.856265 CGCAAGAAGGCCCTGTTGTC 61.856 60.000 12.47 4.73 43.02 3.18
2887 8218 1.527433 GCAAGAAGGCCCTGTTGTCC 61.527 60.000 12.47 0.00 0.00 4.02
2888 8219 1.073199 AAGAAGGCCCTGTTGTCCG 59.927 57.895 0.00 0.00 0.00 4.79
2889 8220 3.056328 GAAGGCCCTGTTGTCCGC 61.056 66.667 0.00 0.00 0.00 5.54
2890 8221 4.660938 AAGGCCCTGTTGTCCGCC 62.661 66.667 0.00 0.00 41.96 6.13
2892 8223 4.740822 GGCCCTGTTGTCCGCCAT 62.741 66.667 0.00 0.00 41.25 4.40
2893 8224 2.676471 GCCCTGTTGTCCGCCATT 60.676 61.111 0.00 0.00 0.00 3.16
2894 8225 2.700773 GCCCTGTTGTCCGCCATTC 61.701 63.158 0.00 0.00 0.00 2.67
2895 8226 1.303236 CCCTGTTGTCCGCCATTCA 60.303 57.895 0.00 0.00 0.00 2.57
2896 8227 1.308069 CCCTGTTGTCCGCCATTCAG 61.308 60.000 0.00 0.00 0.00 3.02
2897 8228 0.606401 CCTGTTGTCCGCCATTCAGT 60.606 55.000 0.00 0.00 0.00 3.41
2898 8229 0.798776 CTGTTGTCCGCCATTCAGTC 59.201 55.000 0.00 0.00 0.00 3.51
2899 8230 0.605319 TGTTGTCCGCCATTCAGTCC 60.605 55.000 0.00 0.00 0.00 3.85
2900 8231 1.002624 TTGTCCGCCATTCAGTCCC 60.003 57.895 0.00 0.00 0.00 4.46
2901 8232 1.488705 TTGTCCGCCATTCAGTCCCT 61.489 55.000 0.00 0.00 0.00 4.20
2902 8233 1.299976 GTCCGCCATTCAGTCCCTT 59.700 57.895 0.00 0.00 0.00 3.95
2903 8234 1.026718 GTCCGCCATTCAGTCCCTTG 61.027 60.000 0.00 0.00 0.00 3.61
2904 8235 1.198094 TCCGCCATTCAGTCCCTTGA 61.198 55.000 0.00 0.00 0.00 3.02
2905 8236 1.026718 CCGCCATTCAGTCCCTTGAC 61.027 60.000 0.00 0.00 42.09 3.18
2906 8237 1.026718 CGCCATTCAGTCCCTTGACC 61.027 60.000 0.00 0.00 42.81 4.02
2907 8238 0.329596 GCCATTCAGTCCCTTGACCT 59.670 55.000 0.00 0.00 42.81 3.85
2908 8239 1.952367 GCCATTCAGTCCCTTGACCTG 60.952 57.143 0.00 0.00 42.81 4.00
2909 8240 1.457346 CATTCAGTCCCTTGACCTGC 58.543 55.000 0.00 0.00 42.81 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 248 3.179265 CTTGTGGTCGTAGCCGCG 61.179 66.667 0.00 0.00 41.67 6.46
373 381 4.019321 GCCCCTGCCTATAAATAGACATCA 60.019 45.833 0.00 0.00 32.05 3.07
411 423 5.805728 AGCTGTAACCTGTAAATAGCTGTT 58.194 37.500 0.00 0.00 38.48 3.16
484 497 3.825585 GGGACGGAGGGAGTAATTACTAG 59.174 52.174 18.03 8.21 36.50 2.57
485 498 3.205056 TGGGACGGAGGGAGTAATTACTA 59.795 47.826 18.03 0.00 36.50 1.82
486 499 2.023695 TGGGACGGAGGGAGTAATTACT 60.024 50.000 18.05 18.05 39.71 2.24
487 500 2.391678 TGGGACGGAGGGAGTAATTAC 58.608 52.381 7.57 7.57 0.00 1.89
488 501 2.852714 TGGGACGGAGGGAGTAATTA 57.147 50.000 0.00 0.00 0.00 1.40
489 502 2.191981 ATGGGACGGAGGGAGTAATT 57.808 50.000 0.00 0.00 0.00 1.40
491 504 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
493 506 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
494 507 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
496 509 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
498 511 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
499 512 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
543 556 5.463061 CCGTCCCATAATATACGACGTTTTT 59.537 40.000 5.50 0.31 43.56 1.94
547 560 3.411446 TCCGTCCCATAATATACGACGT 58.589 45.455 5.52 5.52 43.56 4.34
548 561 3.181503 CCTCCGTCCCATAATATACGACG 60.182 52.174 11.89 11.89 44.41 5.12
549 562 3.129988 CCCTCCGTCCCATAATATACGAC 59.870 52.174 0.00 0.00 37.53 4.34
550 563 3.010472 TCCCTCCGTCCCATAATATACGA 59.990 47.826 0.00 0.00 37.53 3.43
551 564 3.359033 TCCCTCCGTCCCATAATATACG 58.641 50.000 0.00 0.00 35.20 3.06
552 565 4.351127 ACTCCCTCCGTCCCATAATATAC 58.649 47.826 0.00 0.00 0.00 1.47
553 566 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
556 569 2.492940 CCTACTCCCTCCGTCCCATAAT 60.493 54.545 0.00 0.00 0.00 1.28
557 570 1.133262 CCTACTCCCTCCGTCCCATAA 60.133 57.143 0.00 0.00 0.00 1.90
559 572 1.233369 CCTACTCCCTCCGTCCCAT 59.767 63.158 0.00 0.00 0.00 4.00
560 573 1.294426 ATCCTACTCCCTCCGTCCCA 61.294 60.000 0.00 0.00 0.00 4.37
561 574 0.776176 TATCCTACTCCCTCCGTCCC 59.224 60.000 0.00 0.00 0.00 4.46
562 575 2.903375 ATATCCTACTCCCTCCGTCC 57.097 55.000 0.00 0.00 0.00 4.79
563 576 5.183522 CAGTTAATATCCTACTCCCTCCGTC 59.816 48.000 0.00 0.00 0.00 4.79
564 577 5.078256 CAGTTAATATCCTACTCCCTCCGT 58.922 45.833 0.00 0.00 0.00 4.69
565 578 5.078256 ACAGTTAATATCCTACTCCCTCCG 58.922 45.833 0.00 0.00 0.00 4.63
567 580 6.778559 ACTGACAGTTAATATCCTACTCCCTC 59.221 42.308 1.07 0.00 0.00 4.30
682 701 1.004394 AGGAGTCGGATTTTTGGGTCC 59.996 52.381 0.00 0.00 0.00 4.46
696 715 4.554036 GGCCGGGCATCAGGAGTC 62.554 72.222 25.33 0.00 0.00 3.36
756 776 1.021390 CACACTCCATCCGAAGCACC 61.021 60.000 0.00 0.00 0.00 5.01
905 1425 0.608640 AGTAGCACTTCGGTTCCCTG 59.391 55.000 0.00 0.00 0.00 4.45
907 1427 1.823610 ACTAGTAGCACTTCGGTTCCC 59.176 52.381 0.00 0.00 0.00 3.97
908 1428 2.877335 CACTAGTAGCACTTCGGTTCC 58.123 52.381 0.00 0.00 0.00 3.62
913 1518 3.217599 TCAAGCACTAGTAGCACTTCG 57.782 47.619 16.27 5.66 0.00 3.79
914 1519 4.748892 TCATCAAGCACTAGTAGCACTTC 58.251 43.478 16.27 0.00 0.00 3.01
915 1520 4.808414 TCATCAAGCACTAGTAGCACTT 57.192 40.909 16.27 6.86 0.00 3.16
931 1536 6.998074 GGGTCCATTTATGTACTTCATCATCA 59.002 38.462 0.00 0.00 37.91 3.07
1211 1846 5.986135 CAGTAGTGTTAGTGTCTCTTGCTTT 59.014 40.000 0.00 0.00 0.00 3.51
1279 1960 0.802607 GTCAGATCGCCGTCTTCCAC 60.803 60.000 0.00 0.00 0.00 4.02
1582 6883 2.381911 GGGTTGATGATGCAGTTCCAT 58.618 47.619 0.00 0.00 0.00 3.41
1606 6907 1.601419 GATCGACGTCCCTCCCAACA 61.601 60.000 10.58 0.00 0.00 3.33
1609 6910 1.753078 CTGATCGACGTCCCTCCCA 60.753 63.158 10.58 0.58 0.00 4.37
1624 6925 2.044352 TCATCGACGAGGCCCTGA 60.044 61.111 4.29 0.00 0.00 3.86
1654 6955 0.324285 CCTCCAGCAGCTTCTTCAGT 59.676 55.000 0.00 0.00 0.00 3.41
1710 7011 1.473257 CGAAGCTGATGAAATCCCCGA 60.473 52.381 0.00 0.00 44.73 5.14
1885 7186 1.568606 GTATTCTCCCGCTTCCGAAC 58.431 55.000 0.00 0.00 36.29 3.95
1891 7192 4.263068 CCTTATCATGGTATTCTCCCGCTT 60.263 45.833 0.00 0.00 0.00 4.68
1933 7235 7.543868 GGTTGGATAGAGATGATTAGAACATCG 59.456 40.741 0.00 0.00 45.77 3.84
1938 7240 6.239317 CGTGGGTTGGATAGAGATGATTAGAA 60.239 42.308 0.00 0.00 0.00 2.10
1953 7255 4.360951 ACTTTATTTCTCGTGGGTTGGA 57.639 40.909 0.00 0.00 0.00 3.53
1983 7285 7.669722 ACAAGTTATTTCATATCCACAACCACT 59.330 33.333 0.00 0.00 0.00 4.00
1988 7290 8.240682 CCGAAACAAGTTATTTCATATCCACAA 58.759 33.333 7.36 0.00 36.09 3.33
2067 7371 5.957771 AACAGAAATAGAGGGCATAGACA 57.042 39.130 0.00 0.00 0.00 3.41
2089 7393 2.102757 TGTGAAAACCGTGGTACTGCTA 59.897 45.455 0.00 0.00 0.00 3.49
2100 7404 3.157932 ACAACATTGGTGTGAAAACCG 57.842 42.857 6.53 0.00 43.73 4.44
2149 7459 4.271776 AGAAAGGTGAAACGGAACTTTACG 59.728 41.667 0.00 0.00 41.22 3.18
2154 7464 3.211865 GGAAGAAAGGTGAAACGGAACT 58.788 45.455 0.00 0.00 38.12 3.01
2503 7834 7.232330 TGTGATTCCCATGTTACTTTTTGATCA 59.768 33.333 0.00 0.00 0.00 2.92
2551 7882 7.223387 CGGTTTGGTACATAGTATGTTTCTACC 59.777 40.741 20.52 20.04 41.63 3.18
2567 7898 0.109153 AGGGGACAACGGTTTGGTAC 59.891 55.000 0.00 0.00 37.00 3.34
2576 7907 1.221021 GGGAAGCTAGGGGACAACG 59.779 63.158 0.00 0.00 0.00 4.10
2577 7908 0.992695 AAGGGAAGCTAGGGGACAAC 59.007 55.000 0.00 0.00 0.00 3.32
2578 7909 1.286248 GAAGGGAAGCTAGGGGACAA 58.714 55.000 0.00 0.00 0.00 3.18
2580 7911 1.823976 CGAAGGGAAGCTAGGGGAC 59.176 63.158 0.00 0.00 0.00 4.46
2581 7912 2.064581 GCGAAGGGAAGCTAGGGGA 61.065 63.158 0.00 0.00 0.00 4.81
2582 7913 2.506472 GCGAAGGGAAGCTAGGGG 59.494 66.667 0.00 0.00 0.00 4.79
2583 7914 2.107141 CGCGAAGGGAAGCTAGGG 59.893 66.667 0.00 0.00 46.37 3.53
2584 7915 2.586357 GCGCGAAGGGAAGCTAGG 60.586 66.667 12.10 0.00 46.37 3.02
2585 7916 2.586357 GGCGCGAAGGGAAGCTAG 60.586 66.667 12.10 0.00 46.37 3.42
2586 7917 2.644555 GATGGCGCGAAGGGAAGCTA 62.645 60.000 12.10 0.00 46.37 3.32
2587 7918 4.101448 ATGGCGCGAAGGGAAGCT 62.101 61.111 12.10 0.00 46.37 3.74
2588 7919 3.577313 GATGGCGCGAAGGGAAGC 61.577 66.667 12.10 0.00 46.37 3.86
2589 7920 2.125147 TGATGGCGCGAAGGGAAG 60.125 61.111 12.10 0.00 46.37 3.46
2590 7921 2.435938 GTGATGGCGCGAAGGGAA 60.436 61.111 12.10 0.00 46.37 3.97
2591 7922 4.467084 GGTGATGGCGCGAAGGGA 62.467 66.667 12.10 0.00 46.37 4.20
2597 7928 3.202001 AATTCGGGTGATGGCGCG 61.202 61.111 0.00 0.00 44.48 6.86
2598 7929 2.408835 CAATTCGGGTGATGGCGC 59.591 61.111 0.00 0.00 0.00 6.53
2599 7930 3.110139 CCAATTCGGGTGATGGCG 58.890 61.111 0.00 0.00 0.00 5.69
2601 7932 4.664062 AGCCAATTCGGGTGATGG 57.336 55.556 0.00 0.00 46.40 3.51
2607 7938 1.878088 CATGATCAGAGCCAATTCGGG 59.122 52.381 0.09 0.00 34.06 5.14
2608 7939 2.569059 ACATGATCAGAGCCAATTCGG 58.431 47.619 0.00 0.00 38.11 4.30
2609 7940 3.003068 GGAACATGATCAGAGCCAATTCG 59.997 47.826 0.00 0.00 0.00 3.34
2610 7941 3.317430 GGGAACATGATCAGAGCCAATTC 59.683 47.826 0.00 0.00 0.00 2.17
2611 7942 3.294214 GGGAACATGATCAGAGCCAATT 58.706 45.455 0.00 0.00 0.00 2.32
2612 7943 2.423947 GGGGAACATGATCAGAGCCAAT 60.424 50.000 0.00 0.00 0.00 3.16
2613 7944 1.064463 GGGGAACATGATCAGAGCCAA 60.064 52.381 0.00 0.00 0.00 4.52
2614 7945 0.548031 GGGGAACATGATCAGAGCCA 59.452 55.000 0.00 0.00 0.00 4.75
2615 7946 0.842635 AGGGGAACATGATCAGAGCC 59.157 55.000 0.00 0.00 0.00 4.70
2616 7947 1.202746 GGAGGGGAACATGATCAGAGC 60.203 57.143 0.00 0.00 0.00 4.09
2617 7948 2.406559 AGGAGGGGAACATGATCAGAG 58.593 52.381 0.00 0.00 0.00 3.35
2618 7949 2.575921 AGGAGGGGAACATGATCAGA 57.424 50.000 0.00 0.00 0.00 3.27
2619 7950 2.776536 AGAAGGAGGGGAACATGATCAG 59.223 50.000 0.00 0.00 0.00 2.90
2620 7951 2.507058 CAGAAGGAGGGGAACATGATCA 59.493 50.000 0.00 0.00 0.00 2.92
2621 7952 2.507471 ACAGAAGGAGGGGAACATGATC 59.493 50.000 0.00 0.00 0.00 2.92
2622 7953 2.507471 GACAGAAGGAGGGGAACATGAT 59.493 50.000 0.00 0.00 0.00 2.45
2623 7954 1.909302 GACAGAAGGAGGGGAACATGA 59.091 52.381 0.00 0.00 0.00 3.07
2624 7955 1.065126 GGACAGAAGGAGGGGAACATG 60.065 57.143 0.00 0.00 0.00 3.21
2625 7956 1.203492 AGGACAGAAGGAGGGGAACAT 60.203 52.381 0.00 0.00 0.00 2.71
2626 7957 0.193574 AGGACAGAAGGAGGGGAACA 59.806 55.000 0.00 0.00 0.00 3.18
2627 7958 0.906066 GAGGACAGAAGGAGGGGAAC 59.094 60.000 0.00 0.00 0.00 3.62
2628 7959 0.252742 GGAGGACAGAAGGAGGGGAA 60.253 60.000 0.00 0.00 0.00 3.97
2629 7960 1.392534 GGAGGACAGAAGGAGGGGA 59.607 63.158 0.00 0.00 0.00 4.81
2630 7961 2.060980 CGGAGGACAGAAGGAGGGG 61.061 68.421 0.00 0.00 0.00 4.79
2631 7962 2.726351 GCGGAGGACAGAAGGAGGG 61.726 68.421 0.00 0.00 0.00 4.30
2632 7963 2.726351 GGCGGAGGACAGAAGGAGG 61.726 68.421 0.00 0.00 0.00 4.30
2633 7964 2.896443 GGCGGAGGACAGAAGGAG 59.104 66.667 0.00 0.00 0.00 3.69
2634 7965 2.856039 ATCGGCGGAGGACAGAAGGA 62.856 60.000 7.21 0.00 0.00 3.36
2635 7966 2.427245 ATCGGCGGAGGACAGAAGG 61.427 63.158 7.21 0.00 0.00 3.46
2636 7967 1.227089 CATCGGCGGAGGACAGAAG 60.227 63.158 7.21 0.00 0.00 2.85
2637 7968 1.667154 CTCATCGGCGGAGGACAGAA 61.667 60.000 7.21 0.00 0.00 3.02
2638 7969 2.044352 TCATCGGCGGAGGACAGA 60.044 61.111 7.21 0.00 0.00 3.41
2639 7970 2.415010 CTCATCGGCGGAGGACAG 59.585 66.667 7.21 0.00 0.00 3.51
2640 7971 3.838271 GCTCATCGGCGGAGGACA 61.838 66.667 7.21 0.00 32.96 4.02
2658 7989 2.202974 GTGGGGTAATCGGCGTCC 60.203 66.667 6.85 5.74 0.00 4.79
2659 7990 2.359570 ATCGTGGGGTAATCGGCGTC 62.360 60.000 6.85 0.00 0.00 5.19
2660 7991 1.963464 AATCGTGGGGTAATCGGCGT 61.963 55.000 6.85 0.00 0.00 5.68
2661 7992 1.219522 GAATCGTGGGGTAATCGGCG 61.220 60.000 0.00 0.00 0.00 6.46
2662 7993 0.883370 GGAATCGTGGGGTAATCGGC 60.883 60.000 0.00 0.00 0.00 5.54
2663 7994 0.466543 TGGAATCGTGGGGTAATCGG 59.533 55.000 0.00 0.00 0.00 4.18
2664 7995 1.138266 ACTGGAATCGTGGGGTAATCG 59.862 52.381 0.00 0.00 0.00 3.34
2665 7996 3.277142 AACTGGAATCGTGGGGTAATC 57.723 47.619 0.00 0.00 0.00 1.75
2666 7997 3.009695 TCAAACTGGAATCGTGGGGTAAT 59.990 43.478 0.00 0.00 0.00 1.89
2667 7998 2.372504 TCAAACTGGAATCGTGGGGTAA 59.627 45.455 0.00 0.00 0.00 2.85
2668 7999 1.979308 TCAAACTGGAATCGTGGGGTA 59.021 47.619 0.00 0.00 0.00 3.69
2669 8000 0.768622 TCAAACTGGAATCGTGGGGT 59.231 50.000 0.00 0.00 0.00 4.95
2670 8001 1.003118 TCTCAAACTGGAATCGTGGGG 59.997 52.381 0.00 0.00 0.00 4.96
2671 8002 2.076863 GTCTCAAACTGGAATCGTGGG 58.923 52.381 0.00 0.00 0.00 4.61
2672 8003 2.076863 GGTCTCAAACTGGAATCGTGG 58.923 52.381 0.00 0.00 0.00 4.94
2673 8004 3.045601 AGGTCTCAAACTGGAATCGTG 57.954 47.619 0.00 0.00 0.00 4.35
2674 8005 3.325135 AGAAGGTCTCAAACTGGAATCGT 59.675 43.478 0.00 0.00 0.00 3.73
2675 8006 3.681897 CAGAAGGTCTCAAACTGGAATCG 59.318 47.826 0.00 0.00 0.00 3.34
2681 8012 2.149578 CAGCCAGAAGGTCTCAAACTG 58.850 52.381 0.00 0.00 37.19 3.16
2682 8013 1.771255 ACAGCCAGAAGGTCTCAAACT 59.229 47.619 0.00 0.00 37.19 2.66
2683 8014 2.147150 GACAGCCAGAAGGTCTCAAAC 58.853 52.381 0.00 0.00 37.19 2.93
2684 8015 1.072331 GGACAGCCAGAAGGTCTCAAA 59.928 52.381 0.00 0.00 37.19 2.69
2685 8016 0.687354 GGACAGCCAGAAGGTCTCAA 59.313 55.000 0.00 0.00 37.19 3.02
2686 8017 1.194781 GGGACAGCCAGAAGGTCTCA 61.195 60.000 0.00 0.00 37.19 3.27
2687 8018 1.194781 TGGGACAGCCAGAAGGTCTC 61.195 60.000 0.00 0.00 37.19 3.36
2688 8019 0.768221 TTGGGACAGCCAGAAGGTCT 60.768 55.000 0.00 0.00 42.39 3.85
2689 8020 0.110486 TTTGGGACAGCCAGAAGGTC 59.890 55.000 0.00 0.00 42.39 3.85
2690 8021 0.178990 GTTTGGGACAGCCAGAAGGT 60.179 55.000 0.00 0.00 42.39 3.50
2691 8022 0.895559 GGTTTGGGACAGCCAGAAGG 60.896 60.000 0.00 0.00 42.39 3.46
2692 8023 1.237285 CGGTTTGGGACAGCCAGAAG 61.237 60.000 0.00 0.00 42.39 2.85
2693 8024 1.228124 CGGTTTGGGACAGCCAGAA 60.228 57.895 0.00 0.00 42.39 3.02
2694 8025 2.429930 CGGTTTGGGACAGCCAGA 59.570 61.111 0.00 0.00 42.39 3.86
2695 8026 2.672996 CCGGTTTGGGACAGCCAG 60.673 66.667 0.00 0.00 42.39 4.85
2696 8027 2.575455 AAACCGGTTTGGGACAGCCA 62.575 55.000 31.17 0.00 44.64 4.75
2697 8028 1.802337 GAAACCGGTTTGGGACAGCC 61.802 60.000 36.17 15.68 44.64 4.85
2698 8029 1.658114 GAAACCGGTTTGGGACAGC 59.342 57.895 36.17 16.43 44.64 4.40
2699 8030 0.816421 ACGAAACCGGTTTGGGACAG 60.816 55.000 35.54 21.85 44.64 3.51
2700 8031 1.096386 CACGAAACCGGTTTGGGACA 61.096 55.000 35.54 0.00 44.64 4.02
2701 8032 1.650363 CACGAAACCGGTTTGGGAC 59.350 57.895 35.54 22.17 44.64 4.46
2702 8033 1.526455 CCACGAAACCGGTTTGGGA 60.526 57.895 35.54 0.00 44.64 4.37
2703 8034 3.035727 CCACGAAACCGGTTTGGG 58.964 61.111 35.54 28.17 44.64 4.12
2704 8035 2.333581 GCCACGAAACCGGTTTGG 59.666 61.111 36.17 34.22 46.41 3.28
2705 8036 2.051703 CGCCACGAAACCGGTTTG 60.052 61.111 36.17 27.07 32.11 2.93
2706 8037 3.281395 CCGCCACGAAACCGGTTT 61.281 61.111 32.08 32.08 37.36 3.27
2711 8042 4.025401 CACAGCCGCCACGAAACC 62.025 66.667 0.00 0.00 0.00 3.27
2712 8043 4.025401 CCACAGCCGCCACGAAAC 62.025 66.667 0.00 0.00 0.00 2.78
2733 8064 4.154347 GAGCCTCCACCCAGCGAG 62.154 72.222 0.00 0.00 0.00 5.03
2754 8085 4.436998 GACGAGGGTGAGGGTGCG 62.437 72.222 0.00 0.00 0.00 5.34
2755 8086 4.083862 GGACGAGGGTGAGGGTGC 62.084 72.222 0.00 0.00 0.00 5.01
2756 8087 3.391382 GGGACGAGGGTGAGGGTG 61.391 72.222 0.00 0.00 0.00 4.61
2757 8088 4.716977 GGGGACGAGGGTGAGGGT 62.717 72.222 0.00 0.00 0.00 4.34
2759 8090 3.925914 AAGGGGGACGAGGGTGAGG 62.926 68.421 0.00 0.00 0.00 3.86
2760 8091 2.284699 AAGGGGGACGAGGGTGAG 60.285 66.667 0.00 0.00 0.00 3.51
2761 8092 2.284405 GAAGGGGGACGAGGGTGA 60.284 66.667 0.00 0.00 0.00 4.02
2762 8093 3.771160 CGAAGGGGGACGAGGGTG 61.771 72.222 0.00 0.00 0.00 4.61
2775 8106 1.361668 CCACGAGTCAATGGCCGAAG 61.362 60.000 0.00 0.00 0.00 3.79
2776 8107 1.375396 CCACGAGTCAATGGCCGAA 60.375 57.895 0.00 0.00 0.00 4.30
2777 8108 2.264480 CCACGAGTCAATGGCCGA 59.736 61.111 0.00 0.00 0.00 5.54
2781 8112 0.798776 GAAGTGCCACGAGTCAATGG 59.201 55.000 6.12 6.12 39.16 3.16
2782 8113 1.462283 CAGAAGTGCCACGAGTCAATG 59.538 52.381 0.00 0.00 0.00 2.82
2783 8114 1.070758 ACAGAAGTGCCACGAGTCAAT 59.929 47.619 0.00 0.00 0.00 2.57
2784 8115 0.464036 ACAGAAGTGCCACGAGTCAA 59.536 50.000 0.00 0.00 0.00 3.18
2785 8116 0.249447 CACAGAAGTGCCACGAGTCA 60.249 55.000 0.00 0.00 39.21 3.41
2786 8117 2.522060 CACAGAAGTGCCACGAGTC 58.478 57.895 0.00 0.00 39.21 3.36
2787 8118 4.758692 CACAGAAGTGCCACGAGT 57.241 55.556 0.00 0.00 39.21 4.18
2796 8127 1.893808 CCACGCTTGGCACAGAAGT 60.894 57.895 0.00 0.00 42.39 3.01
2797 8128 2.949106 CCACGCTTGGCACAGAAG 59.051 61.111 0.00 0.00 42.39 2.85
2806 8137 1.159713 TGAACTGTCAGCCACGCTTG 61.160 55.000 0.00 0.00 36.40 4.01
2807 8138 0.250467 ATGAACTGTCAGCCACGCTT 60.250 50.000 0.00 0.00 36.40 4.68
2808 8139 0.952497 CATGAACTGTCAGCCACGCT 60.952 55.000 0.00 0.00 40.77 5.07
2809 8140 0.950555 TCATGAACTGTCAGCCACGC 60.951 55.000 0.00 0.00 37.14 5.34
2810 8141 1.462283 CTTCATGAACTGTCAGCCACG 59.538 52.381 3.38 0.00 37.14 4.94
2811 8142 1.808945 CCTTCATGAACTGTCAGCCAC 59.191 52.381 3.38 0.00 37.14 5.01
2812 8143 1.271543 CCCTTCATGAACTGTCAGCCA 60.272 52.381 3.38 0.00 37.14 4.75
2813 8144 1.271597 ACCCTTCATGAACTGTCAGCC 60.272 52.381 3.38 0.00 37.14 4.85
2814 8145 2.191128 ACCCTTCATGAACTGTCAGC 57.809 50.000 3.38 0.00 37.14 4.26
2815 8146 2.816087 CCAACCCTTCATGAACTGTCAG 59.184 50.000 3.38 0.00 37.14 3.51
2816 8147 2.488891 CCCAACCCTTCATGAACTGTCA 60.489 50.000 3.38 0.00 38.41 3.58
2817 8148 2.162681 CCCAACCCTTCATGAACTGTC 58.837 52.381 3.38 0.00 0.00 3.51
2818 8149 1.780309 TCCCAACCCTTCATGAACTGT 59.220 47.619 3.38 1.56 0.00 3.55
2819 8150 2.440409 CTCCCAACCCTTCATGAACTG 58.560 52.381 3.38 0.88 0.00 3.16
2820 8151 1.355720 CCTCCCAACCCTTCATGAACT 59.644 52.381 3.38 0.00 0.00 3.01
2821 8152 1.839424 CCTCCCAACCCTTCATGAAC 58.161 55.000 3.38 0.00 0.00 3.18
2822 8153 0.039618 GCCTCCCAACCCTTCATGAA 59.960 55.000 8.12 8.12 0.00 2.57
2823 8154 0.846427 AGCCTCCCAACCCTTCATGA 60.846 55.000 0.00 0.00 0.00 3.07
2824 8155 0.918983 TAGCCTCCCAACCCTTCATG 59.081 55.000 0.00 0.00 0.00 3.07
2825 8156 1.285078 GTTAGCCTCCCAACCCTTCAT 59.715 52.381 0.00 0.00 0.00 2.57
2826 8157 0.696501 GTTAGCCTCCCAACCCTTCA 59.303 55.000 0.00 0.00 0.00 3.02
2827 8158 0.034380 GGTTAGCCTCCCAACCCTTC 60.034 60.000 0.00 0.00 38.63 3.46
2828 8159 0.477795 AGGTTAGCCTCCCAACCCTT 60.478 55.000 0.00 0.00 42.67 3.95
2829 8160 1.163555 AGGTTAGCCTCCCAACCCT 59.836 57.895 0.00 0.00 42.67 4.34
2830 8161 1.303282 CAGGTTAGCCTCCCAACCC 59.697 63.158 0.00 0.00 44.97 4.11
2831 8162 1.303282 CCAGGTTAGCCTCCCAACC 59.697 63.158 0.00 0.00 44.97 3.77
2832 8163 1.303282 CCCAGGTTAGCCTCCCAAC 59.697 63.158 0.00 0.00 44.97 3.77
2833 8164 1.151677 ACCCAGGTTAGCCTCCCAA 60.152 57.895 0.00 0.00 44.97 4.12
2834 8165 1.615424 GACCCAGGTTAGCCTCCCA 60.615 63.158 0.00 0.00 44.97 4.37
2835 8166 2.732619 CGACCCAGGTTAGCCTCCC 61.733 68.421 0.00 0.00 44.97 4.30
2836 8167 1.677637 CTCGACCCAGGTTAGCCTCC 61.678 65.000 0.00 0.00 44.97 4.30
2837 8168 0.683504 TCTCGACCCAGGTTAGCCTC 60.684 60.000 0.00 0.00 44.97 4.70
2839 8170 1.516423 GTCTCGACCCAGGTTAGCC 59.484 63.158 0.00 0.00 0.00 3.93
2840 8171 1.516423 GGTCTCGACCCAGGTTAGC 59.484 63.158 4.73 0.00 45.68 3.09
2850 8181 1.352404 CGATCGTGGAGGTCTCGAC 59.648 63.158 7.03 3.50 36.46 4.20
2851 8182 2.470362 GCGATCGTGGAGGTCTCGA 61.470 63.158 17.81 0.00 37.96 4.04
2852 8183 2.024871 GCGATCGTGGAGGTCTCG 59.975 66.667 17.81 0.00 0.00 4.04
2853 8184 0.526524 CTTGCGATCGTGGAGGTCTC 60.527 60.000 17.81 0.00 0.00 3.36
2854 8185 0.965866 TCTTGCGATCGTGGAGGTCT 60.966 55.000 17.81 0.00 0.00 3.85
2855 8186 0.108804 TTCTTGCGATCGTGGAGGTC 60.109 55.000 17.81 0.00 0.00 3.85
2856 8187 0.108615 CTTCTTGCGATCGTGGAGGT 60.109 55.000 17.81 0.00 0.00 3.85
2857 8188 0.807667 CCTTCTTGCGATCGTGGAGG 60.808 60.000 17.81 15.83 0.00 4.30
2858 8189 1.424493 GCCTTCTTGCGATCGTGGAG 61.424 60.000 17.81 11.94 0.00 3.86
2859 8190 1.447838 GCCTTCTTGCGATCGTGGA 60.448 57.895 17.81 9.58 0.00 4.02
2860 8191 2.464459 GGCCTTCTTGCGATCGTGG 61.464 63.158 17.81 10.33 0.00 4.94
2861 8192 2.464459 GGGCCTTCTTGCGATCGTG 61.464 63.158 17.81 7.71 0.00 4.35
2862 8193 2.125106 GGGCCTTCTTGCGATCGT 60.125 61.111 17.81 0.00 0.00 3.73
2863 8194 2.176273 CAGGGCCTTCTTGCGATCG 61.176 63.158 11.69 11.69 0.00 3.69
2864 8195 0.678048 AACAGGGCCTTCTTGCGATC 60.678 55.000 1.32 0.00 0.00 3.69
2865 8196 0.962356 CAACAGGGCCTTCTTGCGAT 60.962 55.000 1.32 0.00 0.00 4.58
2866 8197 1.600636 CAACAGGGCCTTCTTGCGA 60.601 57.895 1.32 0.00 0.00 5.10
2867 8198 1.856265 GACAACAGGGCCTTCTTGCG 61.856 60.000 17.19 3.02 0.00 4.85
2868 8199 1.527433 GGACAACAGGGCCTTCTTGC 61.527 60.000 17.19 11.41 0.00 4.01
2869 8200 1.237285 CGGACAACAGGGCCTTCTTG 61.237 60.000 1.32 11.37 0.00 3.02
2870 8201 1.073199 CGGACAACAGGGCCTTCTT 59.927 57.895 1.32 0.00 0.00 2.52
2871 8202 2.750350 CGGACAACAGGGCCTTCT 59.250 61.111 1.32 0.00 0.00 2.85
2872 8203 3.056328 GCGGACAACAGGGCCTTC 61.056 66.667 1.32 0.00 0.00 3.46
2873 8204 4.660938 GGCGGACAACAGGGCCTT 62.661 66.667 1.32 0.00 42.29 4.35
2875 8206 4.740822 ATGGCGGACAACAGGGCC 62.741 66.667 0.00 0.00 45.76 5.80
2876 8207 2.676471 AATGGCGGACAACAGGGC 60.676 61.111 0.00 0.00 0.00 5.19
2877 8208 1.303236 TGAATGGCGGACAACAGGG 60.303 57.895 0.00 0.00 0.00 4.45
2878 8209 0.606401 ACTGAATGGCGGACAACAGG 60.606 55.000 20.00 7.43 39.87 4.00
2879 8210 0.798776 GACTGAATGGCGGACAACAG 59.201 55.000 16.22 16.22 40.70 3.16
2880 8211 0.605319 GGACTGAATGGCGGACAACA 60.605 55.000 0.00 0.00 0.00 3.33
2881 8212 1.305930 GGGACTGAATGGCGGACAAC 61.306 60.000 0.00 0.00 0.00 3.32
2882 8213 1.002624 GGGACTGAATGGCGGACAA 60.003 57.895 0.00 0.00 0.00 3.18
2883 8214 1.488705 AAGGGACTGAATGGCGGACA 61.489 55.000 0.00 0.00 40.86 4.02
2884 8215 1.026718 CAAGGGACTGAATGGCGGAC 61.027 60.000 0.00 0.00 40.86 4.79
2885 8216 1.198094 TCAAGGGACTGAATGGCGGA 61.198 55.000 0.00 0.00 40.86 5.54
2886 8217 1.026718 GTCAAGGGACTGAATGGCGG 61.027 60.000 0.00 0.00 40.86 6.13
2887 8218 1.026718 GGTCAAGGGACTGAATGGCG 61.027 60.000 0.00 0.00 43.77 5.69
2888 8219 0.329596 AGGTCAAGGGACTGAATGGC 59.670 55.000 0.00 0.00 43.77 4.40
2889 8220 1.952367 GCAGGTCAAGGGACTGAATGG 60.952 57.143 0.00 0.00 43.77 3.16
2890 8221 1.457346 GCAGGTCAAGGGACTGAATG 58.543 55.000 0.00 0.00 43.77 2.67
2891 8222 3.965888 GCAGGTCAAGGGACTGAAT 57.034 52.632 0.00 0.00 43.77 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.