Multiple sequence alignment - TraesCS5B01G020600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G020600 chr5B 100.000 2528 0 0 1 2528 20014170 20011643 0.000000e+00 4669.0
1 TraesCS5B01G020600 chr5B 93.581 1075 64 5 789 1859 20688672 20689745 0.000000e+00 1598.0
2 TraesCS5B01G020600 chr5B 93.775 1012 57 6 789 1795 20672462 20673472 0.000000e+00 1515.0
3 TraesCS5B01G020600 chr5B 89.394 1122 99 9 790 1901 20066154 20065043 0.000000e+00 1395.0
4 TraesCS5B01G020600 chr5B 87.112 1094 100 9 800 1887 20036130 20035072 0.000000e+00 1201.0
5 TraesCS5B01G020600 chr5B 96.694 363 12 0 5 367 20671476 20671838 2.780000e-169 604.0
6 TraesCS5B01G020600 chr5B 96.694 363 12 0 5 367 20687686 20688048 2.780000e-169 604.0
7 TraesCS5B01G020600 chr5B 91.331 323 26 2 1917 2238 20689662 20689983 8.300000e-120 440.0
8 TraesCS5B01G020600 chr5B 88.889 324 31 4 1917 2238 20064770 20064450 6.550000e-106 394.0
9 TraesCS5B01G020600 chr5B 94.488 254 10 1 113 362 20037014 20036761 3.050000e-104 388.0
10 TraesCS5B01G020600 chr5B 90.132 304 20 3 1937 2238 20067648 20067353 1.100000e-103 387.0
11 TraesCS5B01G020600 chr5B 92.430 251 19 0 113 363 20072493 20072243 2.390000e-95 359.0
12 TraesCS5B01G020600 chr5B 84.262 305 21 15 1937 2238 20034956 20034676 3.200000e-69 272.0
13 TraesCS5B01G020600 chr5B 97.810 137 3 0 379 515 20671935 20672071 1.170000e-58 237.0
14 TraesCS5B01G020600 chr5B 97.810 137 3 0 379 515 20688145 20688281 1.170000e-58 237.0
15 TraesCS5B01G020600 chr5B 89.119 193 18 3 98 290 684384144 684383955 1.170000e-58 237.0
16 TraesCS5B01G020600 chr5B 91.617 167 13 1 1735 1901 20064981 20064816 1.960000e-56 230.0
17 TraesCS5B01G020600 chr5B 92.073 164 12 1 1738 1901 20065035 20064873 1.960000e-56 230.0
18 TraesCS5B01G020600 chr5B 91.018 167 15 0 1735 1901 20065095 20064929 2.530000e-55 226.0
19 TraesCS5B01G020600 chr5B 91.919 99 4 4 698 794 198272637 198272541 4.390000e-28 135.0
20 TraesCS5B01G020600 chr5B 92.553 94 5 2 699 791 218214442 218214350 1.580000e-27 134.0
21 TraesCS5B01G020600 chr5B 87.629 97 11 1 1917 2013 20064827 20064732 7.390000e-21 111.0
22 TraesCS5B01G020600 chr5B 87.629 97 10 2 1917 2013 20064940 20064846 7.390000e-21 111.0
23 TraesCS5B01G020600 chr5B 92.000 50 4 0 1 50 20072642 20072593 1.250000e-08 71.3
24 TraesCS5B01G020600 chr5B 93.617 47 2 1 379 424 20036676 20036630 4.510000e-08 69.4
25 TraesCS5B01G020600 chr5D 93.711 1113 65 5 790 1899 27691291 27692401 0.000000e+00 1663.0
26 TraesCS5B01G020600 chr5D 87.500 1104 97 10 790 1887 27681816 27682884 0.000000e+00 1236.0
27 TraesCS5B01G020600 chr5D 92.429 317 23 1 1917 2233 27692449 27692764 3.830000e-123 451.0
28 TraesCS5B01G020600 chr5D 92.763 304 18 2 60 363 27690607 27690906 1.070000e-118 436.0
29 TraesCS5B01G020600 chr5D 89.610 308 17 6 1937 2238 27683000 27683298 6.600000e-101 377.0
30 TraesCS5B01G020600 chr5D 89.944 179 18 0 1723 1901 27692282 27692460 5.440000e-57 231.0
31 TraesCS5B01G020600 chr5D 90.588 170 16 0 1732 1901 27692348 27692517 2.530000e-55 226.0
32 TraesCS5B01G020600 chr5D 82.796 279 18 9 379 652 27691000 27691253 3.270000e-54 222.0
33 TraesCS5B01G020600 chr5D 95.575 113 5 0 1789 1901 27682729 27682841 5.560000e-42 182.0
34 TraesCS5B01G020600 chr5D 90.000 60 5 1 379 438 27681280 27681338 2.700000e-10 76.8
35 TraesCS5B01G020600 chr5A 91.751 1091 81 6 790 1871 18950668 18951758 0.000000e+00 1507.0
36 TraesCS5B01G020600 chr5A 86.800 500 42 5 1316 1814 18920700 18921176 1.030000e-148 536.0
37 TraesCS5B01G020600 chr5A 89.441 322 19 7 60 367 18949938 18950258 2.360000e-105 392.0
38 TraesCS5B01G020600 chr5A 90.132 304 19 4 1937 2238 18921100 18921394 3.940000e-103 385.0
39 TraesCS5B01G020600 chr5A 92.653 245 18 0 1994 2238 18951778 18952022 1.110000e-93 353.0
40 TraesCS5B01G020600 chr5A 85.294 340 21 12 379 709 18950350 18950669 8.720000e-85 324.0
41 TraesCS5B01G020600 chr5A 93.500 200 10 2 117 313 18920328 18920527 6.840000e-76 294.0
42 TraesCS5B01G020600 chr5A 95.960 99 4 0 1937 2035 18951682 18951780 7.240000e-36 161.0
43 TraesCS5B01G020600 chr5A 78.151 119 23 3 125 240 475310587 475310705 3.490000e-09 73.1
44 TraesCS5B01G020600 chr5A 92.000 50 4 0 1 50 18920202 18920251 1.250000e-08 71.3
45 TraesCS5B01G020600 chr3B 85.922 206 14 7 2324 2527 550679692 550679500 3.300000e-49 206.0
46 TraesCS5B01G020600 chr3B 96.774 31 1 0 2243 2273 325873886 325873916 5.000000e-03 52.8
47 TraesCS5B01G020600 chr1B 95.604 91 3 1 706 795 388797897 388797807 7.290000e-31 145.0
48 TraesCS5B01G020600 chr1B 89.286 112 7 5 691 800 475170776 475170668 4.390000e-28 135.0
49 TraesCS5B01G020600 chr1B 89.524 105 7 4 698 800 184645293 184645191 2.040000e-26 130.0
50 TraesCS5B01G020600 chr4B 91.667 96 4 4 698 791 136995631 136995724 2.040000e-26 130.0
51 TraesCS5B01G020600 chr4B 91.667 96 4 4 698 791 163471805 163471898 2.040000e-26 130.0
52 TraesCS5B01G020600 chr4B 91.667 96 4 4 698 791 436755465 436755558 2.040000e-26 130.0
53 TraesCS5B01G020600 chr2B 84.962 133 14 6 700 830 55859705 55859833 2.040000e-26 130.0
54 TraesCS5B01G020600 chr1A 79.121 91 17 2 194 283 61713762 61713673 7.550000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G020600 chr5B 20011643 20014170 2527 True 4669.000000 4669 100.000000 1 2528 1 chr5B.!!$R1 2527
1 TraesCS5B01G020600 chr5B 20671476 20673472 1996 False 785.333333 1515 96.093000 5 1795 3 chr5B.!!$F1 1790
2 TraesCS5B01G020600 chr5B 20687686 20689983 2297 False 719.750000 1598 94.854000 5 2238 4 chr5B.!!$F2 2233
3 TraesCS5B01G020600 chr5B 20034676 20037014 2338 True 482.600000 1201 89.869750 113 2238 4 chr5B.!!$R5 2125
4 TraesCS5B01G020600 chr5B 20064450 20067648 3198 True 385.500000 1395 89.797625 790 2238 8 chr5B.!!$R6 1448
5 TraesCS5B01G020600 chr5D 27690607 27692764 2157 False 538.166667 1663 90.371833 60 2233 6 chr5D.!!$F2 2173
6 TraesCS5B01G020600 chr5D 27681280 27683298 2018 False 467.950000 1236 90.671250 379 2238 4 chr5D.!!$F1 1859
7 TraesCS5B01G020600 chr5A 18949938 18952022 2084 False 547.400000 1507 91.019800 60 2238 5 chr5A.!!$F3 2178
8 TraesCS5B01G020600 chr5A 18920202 18921394 1192 False 321.575000 536 90.608000 1 2238 4 chr5A.!!$F2 2237

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 1154 0.314935 CCACCAACCAATGCACACTC 59.685 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 3391 0.03582 AGCGCCCTGTAAAATTCGGA 60.036 50.0 2.29 0.0 0.0 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
351 416 6.998074 GGGTCCATTTATGTACTTCATCATCA 59.002 38.462 0.00 0.00 37.91 3.07
367 432 4.808414 TCATCAAGCACTAGTAGCACTT 57.192 40.909 16.27 6.86 0.00 3.16
368 433 4.748892 TCATCAAGCACTAGTAGCACTTC 58.251 43.478 16.27 0.00 0.00 3.01
369 434 3.217599 TCAAGCACTAGTAGCACTTCG 57.782 47.619 16.27 5.66 0.00 3.79
374 439 2.877335 CACTAGTAGCACTTCGGTTCC 58.123 52.381 0.00 0.00 0.00 3.62
377 442 0.608640 AGTAGCACTTCGGTTCCCTG 59.391 55.000 0.00 0.00 0.00 4.45
513 1154 0.314935 CCACCAACCAATGCACACTC 59.685 55.000 0.00 0.00 0.00 3.51
526 1172 1.021390 CACACTCCATCCGAAGCACC 61.021 60.000 0.00 0.00 0.00 5.01
576 1223 1.662517 CATTTTTATTTGGGCCGGGC 58.337 50.000 22.00 22.00 0.00 6.13
586 1233 4.554036 GGCCGGGCATCAGGAGTC 62.554 72.222 25.33 0.00 0.00 3.36
600 1247 1.004394 AGGAGTCGGATTTTTGGGTCC 59.996 52.381 0.00 0.00 0.00 4.46
637 1284 5.311121 TCCCTGGGAAAACTATGTAACTCAA 59.689 40.000 14.48 0.00 0.00 3.02
674 1322 9.701098 ACAATATGTAACTGACGTTTCTAGAAA 57.299 29.630 13.99 13.99 34.59 2.52
712 1362 8.910944 TGTAACTGACAGTTAATATCCTACTCC 58.089 37.037 25.81 11.85 41.80 3.85
714 1364 6.684538 ACTGACAGTTAATATCCTACTCCCT 58.315 40.000 1.07 0.00 0.00 4.20
717 1367 5.078256 ACAGTTAATATCCTACTCCCTCCG 58.922 45.833 0.00 0.00 0.00 4.63
718 1368 5.078256 CAGTTAATATCCTACTCCCTCCGT 58.922 45.833 0.00 0.00 0.00 4.69
721 1371 0.776176 TATCCTACTCCCTCCGTCCC 59.224 60.000 0.00 0.00 0.00 4.46
723 1373 1.233369 CCTACTCCCTCCGTCCCAT 59.767 63.158 0.00 0.00 0.00 4.00
724 1374 0.481567 CCTACTCCCTCCGTCCCATA 59.518 60.000 0.00 0.00 0.00 2.74
726 1376 2.492940 CCTACTCCCTCCGTCCCATAAT 60.493 54.545 0.00 0.00 0.00 1.28
727 1377 3.245514 CCTACTCCCTCCGTCCCATAATA 60.246 52.174 0.00 0.00 0.00 0.98
728 1378 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
729 1379 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
730 1380 4.351127 ACTCCCTCCGTCCCATAATATAC 58.649 47.826 0.00 0.00 0.00 1.47
731 1381 3.359033 TCCCTCCGTCCCATAATATACG 58.641 50.000 0.00 0.00 35.20 3.06
732 1382 3.010472 TCCCTCCGTCCCATAATATACGA 59.990 47.826 0.00 0.00 37.53 3.43
733 1383 3.129988 CCCTCCGTCCCATAATATACGAC 59.870 52.174 0.00 0.00 37.53 4.34
735 1385 3.411446 TCCGTCCCATAATATACGACGT 58.589 45.455 5.52 5.52 43.56 4.34
736 1386 3.820467 TCCGTCCCATAATATACGACGTT 59.180 43.478 5.50 0.00 43.56 3.99
737 1387 4.278170 TCCGTCCCATAATATACGACGTTT 59.722 41.667 5.50 0.00 43.56 3.60
738 1388 4.984161 CCGTCCCATAATATACGACGTTTT 59.016 41.667 5.50 0.69 43.56 2.43
739 1389 5.463061 CCGTCCCATAATATACGACGTTTTT 59.537 40.000 5.50 0.31 43.56 1.94
783 1433 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
785 1435 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
786 1436 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
787 1437 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
788 1438 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
789 1439 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
790 1440 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
791 1441 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
794 1444 2.852714 TGGGACGGAGGGAGTAATTA 57.147 50.000 0.00 0.00 0.00 1.40
795 1445 2.391678 TGGGACGGAGGGAGTAATTAC 58.608 52.381 7.57 7.57 0.00 1.89
796 1446 2.023695 TGGGACGGAGGGAGTAATTACT 60.024 50.000 18.05 18.05 39.71 2.24
797 1447 3.205056 TGGGACGGAGGGAGTAATTACTA 59.795 47.826 18.03 0.00 36.50 1.82
798 1448 3.825585 GGGACGGAGGGAGTAATTACTAG 59.174 52.174 18.03 8.21 36.50 2.57
799 1449 3.255395 GGACGGAGGGAGTAATTACTAGC 59.745 52.174 18.03 6.92 36.50 3.42
800 1450 3.229293 ACGGAGGGAGTAATTACTAGCC 58.771 50.000 18.03 15.08 36.50 3.93
801 1451 3.117208 ACGGAGGGAGTAATTACTAGCCT 60.117 47.826 18.03 6.57 36.50 4.58
804 1546 5.537674 CGGAGGGAGTAATTACTAGCCTAAA 59.462 44.000 18.03 0.00 36.50 1.85
871 1614 5.805728 AGCTGTAACCTGTAAATAGCTGTT 58.194 37.500 0.00 0.00 38.48 3.16
909 1656 4.019321 GCCCCTGCCTATAAATAGACATCA 60.019 45.833 0.00 0.00 32.05 3.07
1010 1764 0.106819 GCAAGATCCATGAGGCCACT 60.107 55.000 5.01 0.00 33.74 4.00
1035 1789 3.179265 CTTGTGGTCGTAGCCGCG 61.179 66.667 0.00 0.00 41.67 6.46
1433 2187 1.005037 AGTGCGACGATGCCTTTGA 60.005 52.632 0.00 0.00 0.00 2.69
1434 2188 0.602638 AGTGCGACGATGCCTTTGAA 60.603 50.000 0.00 0.00 0.00 2.69
1490 2244 1.454201 CTCTACTCCGTGCAGACAGA 58.546 55.000 0.00 0.00 0.00 3.41
1552 2306 6.308566 TGAATAGCATCATGGATCCAAATCA 58.691 36.000 20.67 6.26 33.21 2.57
1574 2328 1.750206 GGGAGAGTTTAGAGGTCGGAC 59.250 57.143 0.00 0.00 0.00 4.79
1598 2354 6.600822 ACCAACTTGTAGCGATTACTACTCTA 59.399 38.462 3.62 0.00 42.53 2.43
1606 2362 9.177608 TGTAGCGATTACTACTCTAAACCTTTA 57.822 33.333 3.62 0.00 42.53 1.85
1666 2422 5.047377 AGTTGTGGGTTTATTTACATGCCTG 60.047 40.000 0.00 0.00 0.00 4.85
1742 2502 6.183360 GCATTAAATTTCACATGCCCTTTCAG 60.183 38.462 14.69 0.00 36.77 3.02
1747 2507 1.133823 TCACATGCCCTTTCAGTGTGT 60.134 47.619 0.00 0.00 40.63 3.72
1889 2820 7.690952 ATTTATTTTCCTTGTAACGTAGCCA 57.309 32.000 0.00 0.00 0.00 4.75
1890 2821 7.507733 TTTATTTTCCTTGTAACGTAGCCAA 57.492 32.000 0.00 0.00 0.00 4.52
1891 2822 7.507733 TTATTTTCCTTGTAACGTAGCCAAA 57.492 32.000 0.00 0.00 0.00 3.28
1892 2823 5.427036 TTTTCCTTGTAACGTAGCCAAAG 57.573 39.130 0.00 0.00 0.00 2.77
1893 2824 4.339872 TTCCTTGTAACGTAGCCAAAGA 57.660 40.909 0.00 0.00 0.00 2.52
1894 2825 4.339872 TCCTTGTAACGTAGCCAAAGAA 57.660 40.909 0.00 0.00 0.00 2.52
1895 2826 4.901868 TCCTTGTAACGTAGCCAAAGAAT 58.098 39.130 0.00 0.00 0.00 2.40
1896 2827 5.310451 TCCTTGTAACGTAGCCAAAGAATT 58.690 37.500 0.00 0.00 0.00 2.17
1897 2828 5.180492 TCCTTGTAACGTAGCCAAAGAATTG 59.820 40.000 0.00 0.00 36.25 2.32
1898 2829 5.048991 CCTTGTAACGTAGCCAAAGAATTGT 60.049 40.000 0.00 0.00 34.60 2.71
1899 2830 5.600908 TGTAACGTAGCCAAAGAATTGTC 57.399 39.130 0.00 0.00 34.60 3.18
1900 2831 5.302360 TGTAACGTAGCCAAAGAATTGTCT 58.698 37.500 0.00 0.00 34.60 3.41
1901 2832 6.457355 TGTAACGTAGCCAAAGAATTGTCTA 58.543 36.000 0.00 0.00 34.60 2.59
1902 2833 7.101054 TGTAACGTAGCCAAAGAATTGTCTAT 58.899 34.615 0.00 0.00 30.47 1.98
1903 2834 7.604927 TGTAACGTAGCCAAAGAATTGTCTATT 59.395 33.333 0.00 0.00 30.47 1.73
1904 2835 6.663944 ACGTAGCCAAAGAATTGTCTATTC 57.336 37.500 0.00 0.00 42.51 1.75
1905 2836 5.291128 ACGTAGCCAAAGAATTGTCTATTCG 59.709 40.000 0.00 0.00 45.99 3.34
1906 2837 4.622701 AGCCAAAGAATTGTCTATTCGC 57.377 40.909 2.02 0.48 45.99 4.70
1907 2838 4.009675 AGCCAAAGAATTGTCTATTCGCA 58.990 39.130 2.02 0.00 45.99 5.10
1908 2839 4.458989 AGCCAAAGAATTGTCTATTCGCAA 59.541 37.500 2.02 0.00 45.99 4.85
1909 2840 5.048083 AGCCAAAGAATTGTCTATTCGCAAA 60.048 36.000 2.02 0.00 45.99 3.68
1910 2841 5.633182 GCCAAAGAATTGTCTATTCGCAAAA 59.367 36.000 2.02 0.00 45.99 2.44
1911 2842 6.145371 GCCAAAGAATTGTCTATTCGCAAAAA 59.855 34.615 2.02 0.00 45.99 1.94
1939 2870 7.694388 AAAAGAAATTGCCTTCTACGTTTTC 57.306 32.000 0.00 0.00 34.49 2.29
1940 2871 6.385649 AAGAAATTGCCTTCTACGTTTTCA 57.614 33.333 0.00 0.00 34.49 2.69
1941 2872 6.385649 AGAAATTGCCTTCTACGTTTTCAA 57.614 33.333 0.00 0.00 33.81 2.69
1987 2918 5.358298 AACGTAGCCAAAGAATTGTCTTC 57.642 39.130 0.00 0.00 43.59 2.87
1995 3100 5.106118 GCCAAAGAATTGTCTTCTACCCTTC 60.106 44.000 0.00 0.00 43.59 3.46
2104 3256 7.360861 CGTTCTCTCAACATAATGGCACTTAAA 60.361 37.037 0.00 0.00 0.00 1.52
2125 3277 2.156098 TTTCCAGCTGGCAGGGACT 61.156 57.895 28.91 1.51 43.88 3.85
2151 3303 5.381174 TTTCTGGCATTGTTCTTGATCTG 57.619 39.130 0.00 0.00 0.00 2.90
2240 3393 9.535878 CCTTCTTGATCTTAAATGTACTACTCC 57.464 37.037 0.00 0.00 0.00 3.85
2241 3394 9.239002 CTTCTTGATCTTAAATGTACTACTCCG 57.761 37.037 0.00 0.00 0.00 4.63
2242 3395 8.515695 TCTTGATCTTAAATGTACTACTCCGA 57.484 34.615 0.00 0.00 0.00 4.55
2243 3396 8.963725 TCTTGATCTTAAATGTACTACTCCGAA 58.036 33.333 0.00 0.00 0.00 4.30
2244 3397 9.751542 CTTGATCTTAAATGTACTACTCCGAAT 57.248 33.333 0.00 0.00 0.00 3.34
2252 3405 8.488651 AAATGTACTACTCCGAATTTTACAGG 57.511 34.615 0.00 0.00 0.00 4.00
2253 3406 5.969423 TGTACTACTCCGAATTTTACAGGG 58.031 41.667 0.00 0.00 0.00 4.45
2254 3407 3.870274 ACTACTCCGAATTTTACAGGGC 58.130 45.455 0.00 0.00 0.00 5.19
2255 3408 1.734163 ACTCCGAATTTTACAGGGCG 58.266 50.000 0.00 0.00 0.00 6.13
2256 3409 0.377203 CTCCGAATTTTACAGGGCGC 59.623 55.000 0.00 0.00 0.00 6.53
2257 3410 0.035820 TCCGAATTTTACAGGGCGCT 60.036 50.000 7.64 0.00 0.00 5.92
2258 3411 0.377203 CCGAATTTTACAGGGCGCTC 59.623 55.000 7.64 1.48 0.00 5.03
2259 3412 1.083489 CGAATTTTACAGGGCGCTCA 58.917 50.000 11.40 0.00 0.00 4.26
2260 3413 1.466950 CGAATTTTACAGGGCGCTCAA 59.533 47.619 11.40 0.00 0.00 3.02
2261 3414 2.095466 CGAATTTTACAGGGCGCTCAAA 60.095 45.455 11.40 0.38 0.00 2.69
2262 3415 3.501950 GAATTTTACAGGGCGCTCAAAG 58.498 45.455 11.40 0.38 0.00 2.77
2263 3416 1.243902 TTTTACAGGGCGCTCAAAGG 58.756 50.000 11.40 0.00 0.00 3.11
2264 3417 1.241315 TTTACAGGGCGCTCAAAGGC 61.241 55.000 11.40 0.00 0.00 4.35
2265 3418 2.124507 TTACAGGGCGCTCAAAGGCT 62.125 55.000 11.40 0.00 0.00 4.58
2266 3419 2.521958 TACAGGGCGCTCAAAGGCTC 62.522 60.000 11.40 0.00 0.00 4.70
2267 3420 3.640407 AGGGCGCTCAAAGGCTCA 61.640 61.111 11.40 0.00 30.03 4.26
2268 3421 2.672996 GGGCGCTCAAAGGCTCAA 60.673 61.111 7.64 0.00 0.00 3.02
2269 3422 2.268076 GGGCGCTCAAAGGCTCAAA 61.268 57.895 7.64 0.00 0.00 2.69
2270 3423 1.211190 GGCGCTCAAAGGCTCAAAG 59.789 57.895 7.64 0.00 0.00 2.77
2271 3424 1.211190 GCGCTCAAAGGCTCAAAGG 59.789 57.895 0.00 0.00 0.00 3.11
2272 3425 1.237285 GCGCTCAAAGGCTCAAAGGA 61.237 55.000 0.00 0.00 0.00 3.36
2273 3426 0.801251 CGCTCAAAGGCTCAAAGGAG 59.199 55.000 0.00 0.00 44.33 3.69
2274 3427 1.172175 GCTCAAAGGCTCAAAGGAGG 58.828 55.000 0.00 0.00 41.67 4.30
2275 3428 1.271597 GCTCAAAGGCTCAAAGGAGGA 60.272 52.381 0.00 0.00 41.67 3.71
2276 3429 2.815589 GCTCAAAGGCTCAAAGGAGGAA 60.816 50.000 0.00 0.00 41.67 3.36
2277 3430 3.490348 CTCAAAGGCTCAAAGGAGGAAA 58.510 45.455 0.00 0.00 41.67 3.13
2278 3431 3.891366 CTCAAAGGCTCAAAGGAGGAAAA 59.109 43.478 0.00 0.00 41.67 2.29
2279 3432 3.891366 TCAAAGGCTCAAAGGAGGAAAAG 59.109 43.478 0.00 0.00 41.67 2.27
2280 3433 1.916506 AGGCTCAAAGGAGGAAAAGC 58.083 50.000 0.00 0.00 41.67 3.51
2281 3434 0.891373 GGCTCAAAGGAGGAAAAGCC 59.109 55.000 0.00 0.00 41.67 4.35
2282 3435 0.891373 GCTCAAAGGAGGAAAAGCCC 59.109 55.000 0.00 0.00 41.67 5.19
2283 3436 1.548809 GCTCAAAGGAGGAAAAGCCCT 60.549 52.381 0.00 0.00 41.67 5.19
2284 3437 2.290960 GCTCAAAGGAGGAAAAGCCCTA 60.291 50.000 0.00 0.00 41.67 3.53
2285 3438 3.615155 CTCAAAGGAGGAAAAGCCCTAG 58.385 50.000 0.00 0.00 36.49 3.02
2286 3439 2.986728 TCAAAGGAGGAAAAGCCCTAGT 59.013 45.455 0.00 0.00 36.49 2.57
2287 3440 3.084786 CAAAGGAGGAAAAGCCCTAGTG 58.915 50.000 0.00 0.00 36.49 2.74
2288 3441 1.290134 AGGAGGAAAAGCCCTAGTGG 58.710 55.000 0.00 0.00 36.49 4.00
2299 3452 2.806945 CCCTAGTGGCCATTTCAGAA 57.193 50.000 9.72 0.00 0.00 3.02
2300 3453 2.648059 CCCTAGTGGCCATTTCAGAAG 58.352 52.381 9.72 0.00 0.00 2.85
2301 3454 2.648059 CCTAGTGGCCATTTCAGAAGG 58.352 52.381 9.72 3.80 0.00 3.46
2302 3455 2.025887 CCTAGTGGCCATTTCAGAAGGT 60.026 50.000 9.72 0.00 0.00 3.50
2303 3456 3.199946 CCTAGTGGCCATTTCAGAAGGTA 59.800 47.826 9.72 0.00 0.00 3.08
2304 3457 3.806949 AGTGGCCATTTCAGAAGGTAA 57.193 42.857 9.72 0.00 0.00 2.85
2305 3458 3.690460 AGTGGCCATTTCAGAAGGTAAG 58.310 45.455 9.72 0.00 0.00 2.34
2306 3459 2.755103 GTGGCCATTTCAGAAGGTAAGG 59.245 50.000 9.72 0.00 0.00 2.69
2307 3460 2.647299 TGGCCATTTCAGAAGGTAAGGA 59.353 45.455 0.00 0.00 0.00 3.36
2308 3461 3.269381 TGGCCATTTCAGAAGGTAAGGAT 59.731 43.478 0.00 0.00 0.00 3.24
2309 3462 3.633986 GGCCATTTCAGAAGGTAAGGATG 59.366 47.826 0.00 0.00 0.00 3.51
2310 3463 3.633986 GCCATTTCAGAAGGTAAGGATGG 59.366 47.826 4.07 4.07 36.69 3.51
2311 3464 3.633986 CCATTTCAGAAGGTAAGGATGGC 59.366 47.826 0.00 0.00 0.00 4.40
2312 3465 4.530875 CATTTCAGAAGGTAAGGATGGCT 58.469 43.478 0.00 0.00 0.00 4.75
2313 3466 3.634397 TTCAGAAGGTAAGGATGGCTG 57.366 47.619 0.00 0.00 0.00 4.85
2314 3467 2.551270 TCAGAAGGTAAGGATGGCTGT 58.449 47.619 0.00 0.00 0.00 4.40
2315 3468 2.237143 TCAGAAGGTAAGGATGGCTGTG 59.763 50.000 0.00 0.00 0.00 3.66
2316 3469 2.237143 CAGAAGGTAAGGATGGCTGTGA 59.763 50.000 0.00 0.00 0.00 3.58
2317 3470 2.237392 AGAAGGTAAGGATGGCTGTGAC 59.763 50.000 0.00 0.00 0.00 3.67
2318 3471 0.912486 AGGTAAGGATGGCTGTGACC 59.088 55.000 0.00 0.00 0.00 4.02
2319 3472 0.107165 GGTAAGGATGGCTGTGACCC 60.107 60.000 0.00 0.00 0.00 4.46
2320 3473 0.107165 GTAAGGATGGCTGTGACCCC 60.107 60.000 0.00 0.00 0.00 4.95
2321 3474 0.548926 TAAGGATGGCTGTGACCCCA 60.549 55.000 0.00 0.00 35.21 4.96
2322 3475 2.044946 GGATGGCTGTGACCCCAC 60.045 66.667 0.00 0.00 43.46 4.61
2323 3476 2.436646 GATGGCTGTGACCCCACG 60.437 66.667 0.00 0.00 46.06 4.94
2324 3477 4.722700 ATGGCTGTGACCCCACGC 62.723 66.667 0.00 0.00 46.06 5.34
2327 3480 4.008933 GCTGTGACCCCACGCTCT 62.009 66.667 0.00 0.00 46.06 4.09
2328 3481 2.047844 CTGTGACCCCACGCTCTG 60.048 66.667 0.00 0.00 46.06 3.35
2329 3482 3.596066 CTGTGACCCCACGCTCTGG 62.596 68.421 0.00 0.00 46.06 3.86
2496 3649 4.021925 GGTTCCGCTGGGCTGACT 62.022 66.667 0.00 0.00 0.00 3.41
2497 3650 2.743928 GTTCCGCTGGGCTGACTG 60.744 66.667 0.00 0.00 0.00 3.51
2498 3651 4.704833 TTCCGCTGGGCTGACTGC 62.705 66.667 0.00 0.00 41.94 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.224209 ACACTACTGTTCCCTTCCAACG 60.224 50.000 0.00 0.00 0.00 4.10
62 106 5.065731 ACTTGAGTTCTGTTGAAAGCAAGAG 59.934 40.000 19.23 0.00 44.38 2.85
351 416 1.893801 ACCGAAGTGCTACTAGTGCTT 59.106 47.619 5.39 4.72 0.00 3.91
563 1210 1.152777 CTGATGCCCGGCCCAAATA 60.153 57.895 7.03 0.00 0.00 1.40
576 1223 2.684881 CCCAAAAATCCGACTCCTGATG 59.315 50.000 0.00 0.00 0.00 3.07
616 1263 6.349363 GGCTTTGAGTTACATAGTTTTCCCAG 60.349 42.308 0.00 0.00 31.78 4.45
674 1322 8.738645 AACTGTCAGTTACATCTCTTCTTTTT 57.261 30.769 16.74 0.00 36.52 1.94
687 1337 8.358895 GGGAGTAGGATATTAACTGTCAGTTAC 58.641 40.741 22.35 12.54 40.12 2.50
688 1338 8.287350 AGGGAGTAGGATATTAACTGTCAGTTA 58.713 37.037 19.42 19.42 39.51 2.24
689 1339 7.133483 AGGGAGTAGGATATTAACTGTCAGTT 58.867 38.462 21.48 21.48 41.97 3.16
690 1340 6.684538 AGGGAGTAGGATATTAACTGTCAGT 58.315 40.000 0.00 0.00 0.00 3.41
691 1341 6.209788 GGAGGGAGTAGGATATTAACTGTCAG 59.790 46.154 0.00 0.00 0.00 3.51
692 1342 6.075984 GGAGGGAGTAGGATATTAACTGTCA 58.924 44.000 0.00 0.00 0.00 3.58
693 1343 5.183522 CGGAGGGAGTAGGATATTAACTGTC 59.816 48.000 0.00 0.00 0.00 3.51
696 1346 5.323581 GACGGAGGGAGTAGGATATTAACT 58.676 45.833 0.00 0.00 0.00 2.24
697 1347 4.462132 GGACGGAGGGAGTAGGATATTAAC 59.538 50.000 0.00 0.00 0.00 2.01
698 1348 4.509843 GGGACGGAGGGAGTAGGATATTAA 60.510 50.000 0.00 0.00 0.00 1.40
702 1352 0.776176 GGGACGGAGGGAGTAGGATA 59.224 60.000 0.00 0.00 0.00 2.59
703 1353 1.294426 TGGGACGGAGGGAGTAGGAT 61.294 60.000 0.00 0.00 0.00 3.24
704 1354 1.294426 ATGGGACGGAGGGAGTAGGA 61.294 60.000 0.00 0.00 0.00 2.94
705 1355 0.481567 TATGGGACGGAGGGAGTAGG 59.518 60.000 0.00 0.00 0.00 3.18
708 1358 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
712 1362 3.181503 CGTCGTATATTATGGGACGGAGG 60.182 52.174 16.93 2.04 44.74 4.30
758 1408 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
759 1409 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
760 1410 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
762 1412 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
764 1414 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
765 1415 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
766 1416 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
767 1417 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
768 1418 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
770 1420 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
772 1422 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
773 1423 3.339713 AATTACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
774 1424 2.191981 AATTACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
775 1425 2.023695 AGTAATTACTCCCTCCGTCCCA 60.024 50.000 12.50 0.00 0.00 4.37
776 1426 2.675583 AGTAATTACTCCCTCCGTCCC 58.324 52.381 12.50 0.00 0.00 4.46
777 1427 3.255395 GCTAGTAATTACTCCCTCCGTCC 59.745 52.174 21.25 0.00 37.73 4.79
779 1429 3.117208 AGGCTAGTAATTACTCCCTCCGT 60.117 47.826 21.25 5.41 34.84 4.69
780 1430 3.498334 AGGCTAGTAATTACTCCCTCCG 58.502 50.000 21.25 6.11 34.84 4.63
781 1431 6.990908 TTTAGGCTAGTAATTACTCCCTCC 57.009 41.667 27.95 20.66 38.41 4.30
871 1614 4.056805 GGCACCCTGAGGATGAGA 57.943 61.111 0.00 0.00 36.73 3.27
909 1656 7.834181 ACAATACTATTTGGACAAAGCCTACAT 59.166 33.333 3.71 0.00 33.32 2.29
920 1668 2.286184 CGCCGCACAATACTATTTGGAC 60.286 50.000 0.00 0.00 0.00 4.02
1010 1764 4.680237 CGACCACAAGAGCCGCCA 62.680 66.667 0.00 0.00 0.00 5.69
1035 1789 1.026718 CGGCCAACATGAGAAGGACC 61.027 60.000 2.24 1.12 0.00 4.46
1068 1822 1.110442 CCTTGCAGGTTGTTTCCACA 58.890 50.000 0.00 0.00 0.00 4.17
1135 1889 4.322049 GCTCTGGTAGTGCTTTCTCAACTA 60.322 45.833 0.00 0.00 32.42 2.24
1490 2244 2.113807 TGATGGCTGTGCAGACTATCT 58.886 47.619 6.60 0.00 37.35 1.98
1552 2306 2.024273 TCCGACCTCTAAACTCTCCCAT 60.024 50.000 0.00 0.00 0.00 4.00
1574 2328 5.892568 AGAGTAGTAATCGCTACAAGTTGG 58.107 41.667 7.96 0.00 42.68 3.77
1606 2362 8.588290 TGTTTTATTCCTTGCATGTACCTTAT 57.412 30.769 0.00 0.00 0.00 1.73
1666 2422 7.966246 ATCAAGATGCATTGAGAACTCTATC 57.034 36.000 0.00 0.00 42.20 2.08
1714 2472 4.252073 GGGCATGTGAAATTTAATGCACA 58.748 39.130 23.64 18.38 46.42 4.57
1729 2489 2.071778 AACACACTGAAAGGGCATGT 57.928 45.000 0.00 0.00 45.89 3.21
1733 2493 9.869757 AAAATAAATATAACACACTGAAAGGGC 57.130 29.630 0.00 0.00 45.89 5.19
1760 2520 7.552687 AGACAATTCTTTGACTGTGTTACAAGA 59.447 33.333 0.00 0.00 36.66 3.02
1769 2529 7.690256 AGGGTATAAGACAATTCTTTGACTGT 58.310 34.615 0.00 0.00 39.17 3.55
1770 2530 8.567285 AAGGGTATAAGACAATTCTTTGACTG 57.433 34.615 0.00 0.00 39.17 3.51
1773 2533 9.581289 TTGAAAGGGTATAAGACAATTCTTTGA 57.419 29.630 0.00 0.00 39.17 2.69
1869 2800 5.766174 TCTTTGGCTACGTTACAAGGAAAAT 59.234 36.000 0.00 0.00 29.03 1.82
1870 2801 5.124645 TCTTTGGCTACGTTACAAGGAAAA 58.875 37.500 0.00 0.00 29.03 2.29
1871 2802 4.706035 TCTTTGGCTACGTTACAAGGAAA 58.294 39.130 0.00 0.00 29.03 3.13
1872 2803 4.339872 TCTTTGGCTACGTTACAAGGAA 57.660 40.909 0.00 0.00 29.03 3.36
1873 2804 4.339872 TTCTTTGGCTACGTTACAAGGA 57.660 40.909 0.00 0.00 0.00 3.36
1874 2805 5.048991 ACAATTCTTTGGCTACGTTACAAGG 60.049 40.000 0.00 0.00 37.15 3.61
1875 2806 5.997385 ACAATTCTTTGGCTACGTTACAAG 58.003 37.500 0.00 0.00 37.15 3.16
1876 2807 5.992729 GACAATTCTTTGGCTACGTTACAA 58.007 37.500 0.00 0.00 37.91 2.41
1877 2808 5.600908 GACAATTCTTTGGCTACGTTACA 57.399 39.130 0.00 0.00 37.91 2.41
1886 2817 4.355543 TGCGAATAGACAATTCTTTGGC 57.644 40.909 0.00 0.00 41.68 4.52
1887 2818 7.636259 TTTTTGCGAATAGACAATTCTTTGG 57.364 32.000 0.00 0.00 41.68 3.28
1914 2845 7.762159 TGAAAACGTAGAAGGCAATTTCTTTTT 59.238 29.630 0.00 4.78 38.35 1.94
1915 2846 7.262048 TGAAAACGTAGAAGGCAATTTCTTTT 58.738 30.769 0.00 0.00 38.35 2.27
1916 2847 6.801575 TGAAAACGTAGAAGGCAATTTCTTT 58.198 32.000 0.00 0.00 38.35 2.52
1917 2848 6.385649 TGAAAACGTAGAAGGCAATTTCTT 57.614 33.333 0.00 0.00 38.35 2.52
1918 2849 6.385649 TTGAAAACGTAGAAGGCAATTTCT 57.614 33.333 0.00 3.37 40.39 2.52
1919 2850 6.640907 ACATTGAAAACGTAGAAGGCAATTTC 59.359 34.615 0.00 0.00 0.00 2.17
1920 2851 6.420604 CACATTGAAAACGTAGAAGGCAATTT 59.579 34.615 0.00 0.00 0.00 1.82
1921 2852 5.920273 CACATTGAAAACGTAGAAGGCAATT 59.080 36.000 0.00 0.00 0.00 2.32
1922 2853 5.460646 CACATTGAAAACGTAGAAGGCAAT 58.539 37.500 0.00 0.00 0.00 3.56
1923 2854 4.791411 GCACATTGAAAACGTAGAAGGCAA 60.791 41.667 0.00 0.00 0.00 4.52
1924 2855 3.304391 GCACATTGAAAACGTAGAAGGCA 60.304 43.478 0.00 0.00 0.00 4.75
1925 2856 3.058224 AGCACATTGAAAACGTAGAAGGC 60.058 43.478 0.00 0.00 0.00 4.35
1926 2857 4.749245 AGCACATTGAAAACGTAGAAGG 57.251 40.909 0.00 0.00 0.00 3.46
1927 2858 9.988350 AAATATAGCACATTGAAAACGTAGAAG 57.012 29.630 0.00 0.00 0.00 2.85
1987 2918 5.934402 AGTGTAGTACATTGGAAGGGTAG 57.066 43.478 6.21 0.00 0.00 3.18
1995 3100 9.647797 TTTAGTGACATAAGTGTAGTACATTGG 57.352 33.333 6.21 0.00 39.09 3.16
2104 3256 1.304713 CCCTGCCAGCTGGAAACAT 60.305 57.895 37.21 0.00 41.51 2.71
2125 3277 5.787953 TCAAGAACAATGCCAGAAATTGA 57.212 34.783 3.32 0.00 38.21 2.57
2238 3391 0.035820 AGCGCCCTGTAAAATTCGGA 60.036 50.000 2.29 0.00 0.00 4.55
2239 3392 0.377203 GAGCGCCCTGTAAAATTCGG 59.623 55.000 2.29 0.00 0.00 4.30
2240 3393 1.083489 TGAGCGCCCTGTAAAATTCG 58.917 50.000 2.29 0.00 0.00 3.34
2241 3394 3.501950 CTTTGAGCGCCCTGTAAAATTC 58.498 45.455 2.29 0.00 0.00 2.17
2242 3395 2.231235 CCTTTGAGCGCCCTGTAAAATT 59.769 45.455 2.29 0.00 0.00 1.82
2243 3396 1.818674 CCTTTGAGCGCCCTGTAAAAT 59.181 47.619 2.29 0.00 0.00 1.82
2244 3397 1.243902 CCTTTGAGCGCCCTGTAAAA 58.756 50.000 2.29 0.00 0.00 1.52
2245 3398 1.241315 GCCTTTGAGCGCCCTGTAAA 61.241 55.000 2.29 0.00 0.00 2.01
2246 3399 1.674322 GCCTTTGAGCGCCCTGTAA 60.674 57.895 2.29 0.00 0.00 2.41
2247 3400 2.046314 GCCTTTGAGCGCCCTGTA 60.046 61.111 2.29 0.00 0.00 2.74
2248 3401 3.909086 GAGCCTTTGAGCGCCCTGT 62.909 63.158 2.29 0.00 38.01 4.00
2249 3402 3.130160 GAGCCTTTGAGCGCCCTG 61.130 66.667 2.29 0.00 38.01 4.45
2250 3403 2.697147 TTTGAGCCTTTGAGCGCCCT 62.697 55.000 2.29 0.00 38.01 5.19
2251 3404 2.205243 CTTTGAGCCTTTGAGCGCCC 62.205 60.000 2.29 0.00 38.01 6.13
2252 3405 1.211190 CTTTGAGCCTTTGAGCGCC 59.789 57.895 2.29 0.00 38.01 6.53
2253 3406 1.211190 CCTTTGAGCCTTTGAGCGC 59.789 57.895 0.00 0.00 38.01 5.92
2254 3407 0.801251 CTCCTTTGAGCCTTTGAGCG 59.199 55.000 0.00 0.00 38.01 5.03
2255 3408 1.172175 CCTCCTTTGAGCCTTTGAGC 58.828 55.000 0.00 0.00 37.29 4.26
2256 3409 2.867109 TCCTCCTTTGAGCCTTTGAG 57.133 50.000 0.00 0.00 37.29 3.02
2257 3410 3.593442 TTTCCTCCTTTGAGCCTTTGA 57.407 42.857 0.00 0.00 37.29 2.69
2258 3411 3.553715 GCTTTTCCTCCTTTGAGCCTTTG 60.554 47.826 0.00 0.00 37.29 2.77
2259 3412 2.630098 GCTTTTCCTCCTTTGAGCCTTT 59.370 45.455 0.00 0.00 37.29 3.11
2260 3413 2.242926 GCTTTTCCTCCTTTGAGCCTT 58.757 47.619 0.00 0.00 37.29 4.35
2261 3414 1.548809 GGCTTTTCCTCCTTTGAGCCT 60.549 52.381 5.01 0.00 44.73 4.58
2262 3415 0.891373 GGCTTTTCCTCCTTTGAGCC 59.109 55.000 0.00 0.00 42.35 4.70
2263 3416 0.891373 GGGCTTTTCCTCCTTTGAGC 59.109 55.000 0.00 0.00 37.29 4.26
2264 3417 2.593925 AGGGCTTTTCCTCCTTTGAG 57.406 50.000 0.00 0.00 38.42 3.02
2265 3418 2.986728 ACTAGGGCTTTTCCTCCTTTGA 59.013 45.455 0.00 0.00 38.30 2.69
2266 3419 3.084786 CACTAGGGCTTTTCCTCCTTTG 58.915 50.000 0.00 0.00 38.30 2.77
2267 3420 2.041755 CCACTAGGGCTTTTCCTCCTTT 59.958 50.000 0.00 0.00 38.30 3.11
2268 3421 1.636003 CCACTAGGGCTTTTCCTCCTT 59.364 52.381 0.00 0.00 38.30 3.36
2269 3422 1.290134 CCACTAGGGCTTTTCCTCCT 58.710 55.000 0.00 0.00 38.30 3.69
2270 3423 3.884226 CCACTAGGGCTTTTCCTCC 57.116 57.895 0.00 0.00 38.30 4.30
2280 3433 2.648059 CTTCTGAAATGGCCACTAGGG 58.352 52.381 8.16 0.00 40.85 3.53
2281 3434 2.025887 ACCTTCTGAAATGGCCACTAGG 60.026 50.000 8.16 2.12 38.23 3.02
2282 3435 3.356529 ACCTTCTGAAATGGCCACTAG 57.643 47.619 8.16 4.09 0.00 2.57
2283 3436 4.324254 CCTTACCTTCTGAAATGGCCACTA 60.324 45.833 8.16 0.00 0.00 2.74
2284 3437 3.562176 CCTTACCTTCTGAAATGGCCACT 60.562 47.826 8.16 0.00 0.00 4.00
2285 3438 2.755103 CCTTACCTTCTGAAATGGCCAC 59.245 50.000 8.16 0.00 0.00 5.01
2286 3439 2.647299 TCCTTACCTTCTGAAATGGCCA 59.353 45.455 8.56 8.56 0.00 5.36
2287 3440 3.366052 TCCTTACCTTCTGAAATGGCC 57.634 47.619 0.00 0.00 0.00 5.36
2288 3441 3.633986 CCATCCTTACCTTCTGAAATGGC 59.366 47.826 2.97 0.00 0.00 4.40
2289 3442 3.633986 GCCATCCTTACCTTCTGAAATGG 59.366 47.826 9.58 9.58 36.37 3.16
2290 3443 4.337555 CAGCCATCCTTACCTTCTGAAATG 59.662 45.833 0.00 0.00 0.00 2.32
2291 3444 4.018050 ACAGCCATCCTTACCTTCTGAAAT 60.018 41.667 0.00 0.00 0.00 2.17
2292 3445 3.330701 ACAGCCATCCTTACCTTCTGAAA 59.669 43.478 0.00 0.00 0.00 2.69
2293 3446 2.912956 ACAGCCATCCTTACCTTCTGAA 59.087 45.455 0.00 0.00 0.00 3.02
2294 3447 2.237143 CACAGCCATCCTTACCTTCTGA 59.763 50.000 0.00 0.00 0.00 3.27
2295 3448 2.237143 TCACAGCCATCCTTACCTTCTG 59.763 50.000 0.00 0.00 0.00 3.02
2296 3449 2.237392 GTCACAGCCATCCTTACCTTCT 59.763 50.000 0.00 0.00 0.00 2.85
2297 3450 2.633488 GTCACAGCCATCCTTACCTTC 58.367 52.381 0.00 0.00 0.00 3.46
2298 3451 1.282157 GGTCACAGCCATCCTTACCTT 59.718 52.381 0.00 0.00 0.00 3.50
2299 3452 0.912486 GGTCACAGCCATCCTTACCT 59.088 55.000 0.00 0.00 0.00 3.08
2300 3453 0.107165 GGGTCACAGCCATCCTTACC 60.107 60.000 0.00 0.00 35.40 2.85
2301 3454 0.107165 GGGGTCACAGCCATCCTTAC 60.107 60.000 0.00 0.00 37.54 2.34
2302 3455 0.548926 TGGGGTCACAGCCATCCTTA 60.549 55.000 0.00 0.00 37.54 2.69
2303 3456 1.852157 TGGGGTCACAGCCATCCTT 60.852 57.895 0.00 0.00 37.54 3.36
2304 3457 2.204136 TGGGGTCACAGCCATCCT 60.204 61.111 0.00 0.00 37.54 3.24
2305 3458 2.044946 GTGGGGTCACAGCCATCC 60.045 66.667 0.00 0.00 43.13 3.51
2306 3459 2.436646 CGTGGGGTCACAGCCATC 60.437 66.667 0.00 0.00 43.79 3.51
2307 3460 4.722700 GCGTGGGGTCACAGCCAT 62.723 66.667 0.00 0.00 43.79 4.40
2310 3463 4.008933 AGAGCGTGGGGTCACAGC 62.009 66.667 0.00 0.00 43.79 4.40
2311 3464 2.047844 CAGAGCGTGGGGTCACAG 60.048 66.667 0.00 0.00 43.79 3.66
2312 3465 3.625897 CCAGAGCGTGGGGTCACA 61.626 66.667 0.26 0.00 43.63 3.58
2479 3632 4.021925 AGTCAGCCCAGCGGAACC 62.022 66.667 0.00 0.00 34.22 3.62
2480 3633 2.743928 CAGTCAGCCCAGCGGAAC 60.744 66.667 0.00 0.00 34.22 3.62
2481 3634 4.704833 GCAGTCAGCCCAGCGGAA 62.705 66.667 0.00 0.00 34.22 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.