Multiple sequence alignment - TraesCS5B01G019600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G019600 chr5B 100.000 3788 0 0 1 3788 19441260 19437473 0.000000e+00 6996.0
1 TraesCS5B01G019600 chr5B 98.592 71 1 0 3231 3301 19437962 19437892 3.970000e-25 126.0
2 TraesCS5B01G019600 chr5B 98.592 71 1 0 3299 3369 19438030 19437960 3.970000e-25 126.0
3 TraesCS5B01G019600 chr5B 94.643 56 2 1 1120 1174 505780398 505780453 6.740000e-13 86.1
4 TraesCS5B01G019600 chr5D 95.916 1763 55 4 1171 2920 26792255 26790497 0.000000e+00 2841.0
5 TraesCS5B01G019600 chr5D 91.454 667 36 11 461 1123 26792901 26792252 0.000000e+00 896.0
6 TraesCS5B01G019600 chr5D 85.862 290 16 3 3383 3653 26789955 26789672 6.190000e-73 285.0
7 TraesCS5B01G019600 chr5D 81.961 255 33 6 2927 3170 26790436 26790184 1.780000e-48 204.0
8 TraesCS5B01G019600 chr5D 90.265 113 11 0 237 349 26793024 26792912 8.480000e-32 148.0
9 TraesCS5B01G019600 chr5D 96.104 77 3 0 5 81 26793184 26793108 3.970000e-25 126.0
10 TraesCS5B01G019600 chr5D 89.024 82 7 1 3707 3786 26787931 26787850 2.410000e-17 100.0
11 TraesCS5B01G019600 chr5D 77.444 133 16 8 337 468 443258213 443258094 2.440000e-07 67.6
12 TraesCS5B01G019600 chr5A 95.855 1761 56 3 1171 2919 18638986 18637231 0.000000e+00 2832.0
13 TraesCS5B01G019600 chr5A 90.583 669 42 15 461 1123 18639636 18638983 0.000000e+00 867.0
14 TraesCS5B01G019600 chr5A 84.928 345 25 6 3330 3653 18635015 18634677 1.310000e-84 324.0
15 TraesCS5B01G019600 chr5A 91.667 156 4 4 3 158 18639907 18639761 1.380000e-49 207.0
16 TraesCS5B01G019600 chr5A 91.000 100 8 1 259 357 18639740 18639641 2.370000e-27 134.0
17 TraesCS5B01G019600 chr5A 89.024 82 7 1 3707 3786 18630889 18630808 2.410000e-17 100.0
18 TraesCS5B01G019600 chr5A 92.157 51 4 0 1123 1173 667026823 667026773 5.250000e-09 73.1
19 TraesCS5B01G019600 chr1A 92.073 164 12 1 1905 2067 60280876 60280713 2.940000e-56 230.0
20 TraesCS5B01G019600 chr4A 91.463 164 13 1 1905 2067 541739194 541739031 1.370000e-54 224.0
21 TraesCS5B01G019600 chr4A 85.227 88 9 4 339 425 716980549 716980465 1.870000e-13 87.9
22 TraesCS5B01G019600 chr3B 91.925 161 12 1 1905 2064 606328111 606328271 1.370000e-54 224.0
23 TraesCS5B01G019600 chr3B 90.854 164 14 1 1905 2067 8696956 8696793 6.370000e-53 219.0
24 TraesCS5B01G019600 chr2A 91.304 161 13 1 1905 2064 635593566 635593726 6.370000e-53 219.0
25 TraesCS5B01G019600 chr2A 100.000 29 0 0 397 425 60193378 60193350 2.000000e-03 54.7
26 TraesCS5B01G019600 chr6B 90.244 164 15 1 1905 2067 691829693 691829530 2.960000e-51 213.0
27 TraesCS5B01G019600 chr7A 96.491 57 2 0 1119 1175 82217683 82217739 1.120000e-15 95.3
28 TraesCS5B01G019600 chr7A 93.220 59 4 0 1117 1175 720581818 720581876 1.870000e-13 87.9
29 TraesCS5B01G019600 chr7A 91.071 56 3 2 1119 1172 652704874 652704819 1.460000e-09 75.0
30 TraesCS5B01G019600 chr7D 89.706 68 7 0 358 425 266396160 266396227 1.870000e-13 87.9
31 TraesCS5B01G019600 chr1D 94.340 53 3 0 1120 1172 222915212 222915160 8.720000e-12 82.4
32 TraesCS5B01G019600 chr1D 82.667 75 11 2 350 423 400014269 400014196 8.780000e-07 65.8
33 TraesCS5B01G019600 chr1D 82.667 75 11 2 350 423 400014371 400014298 8.780000e-07 65.8
34 TraesCS5B01G019600 chr4D 94.231 52 2 1 1123 1173 242935825 242935774 1.130000e-10 78.7
35 TraesCS5B01G019600 chr4D 81.818 77 12 2 348 423 26900916 26900841 3.160000e-06 63.9
36 TraesCS5B01G019600 chr7B 91.228 57 3 1 1119 1173 504476549 504476605 4.060000e-10 76.8
37 TraesCS5B01G019600 chr7B 97.561 41 1 0 353 393 552011853 552011813 1.890000e-08 71.3
38 TraesCS5B01G019600 chr3D 97.674 43 1 0 353 395 64179125 64179083 1.460000e-09 75.0
39 TraesCS5B01G019600 chr4B 92.453 53 1 1 1120 1172 460031734 460031685 5.250000e-09 73.1
40 TraesCS5B01G019600 chr4B 100.000 29 0 0 397 425 619445648 619445620 2.000000e-03 54.7
41 TraesCS5B01G019600 chr3A 97.500 40 1 0 356 395 74237144 74237183 6.790000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G019600 chr5B 19437473 19441260 3787 True 2416.000000 6996 99.061333 1 3788 3 chr5B.!!$R1 3787
1 TraesCS5B01G019600 chr5D 26787850 26793184 5334 True 657.142857 2841 90.083714 5 3786 7 chr5D.!!$R2 3781
2 TraesCS5B01G019600 chr5A 18630808 18639907 9099 True 744.000000 2832 90.509500 3 3786 6 chr5A.!!$R2 3783

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.036010 GTGGTGATGGAGTGTCCTGG 60.036 60.000 0.0 0.00 37.46 4.45 F
433 434 0.111089 CAAAACTGCGAGTCTGCGAC 60.111 55.000 0.0 1.15 37.81 5.19 F
895 901 1.202348 GGGGCACAGAATAACACAAGC 59.798 52.381 0.0 0.00 0.00 4.01 F
2566 2573 1.006805 GGCTCCGTCCTGATGATCG 60.007 63.158 0.0 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 1846 0.462047 CCACCCAGCCAACTATCGTC 60.462 60.0 0.0 0.00 0.00 4.20 R
2361 2368 0.179062 AGAACAGGATGCCGATCAGC 60.179 55.0 0.0 0.00 42.53 4.26 R
2577 2584 0.455815 TCACCACGACGATCAGGATG 59.544 55.0 0.0 0.39 37.54 3.51 R
3687 5548 0.320374 TGTGGTTCGGCTCGATTTCT 59.680 50.0 0.0 0.00 35.23 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 3.386402 AGCTACTTGTTCCTCTCCTATGC 59.614 47.826 0.00 0.00 0.00 3.14
81 82 3.386402 GCTACTTGTTCCTCTCCTATGCT 59.614 47.826 0.00 0.00 0.00 3.79
82 83 4.500716 GCTACTTGTTCCTCTCCTATGCTC 60.501 50.000 0.00 0.00 0.00 4.26
83 84 3.718723 ACTTGTTCCTCTCCTATGCTCT 58.281 45.455 0.00 0.00 0.00 4.09
148 149 2.546645 ATTTTGTGCTGGCCATCGCG 62.547 55.000 14.97 0.00 35.02 5.87
158 159 2.640989 CCATCGCGCCATGGATTG 59.359 61.111 27.78 3.99 45.79 2.67
159 160 2.050714 CATCGCGCCATGGATTGC 60.051 61.111 18.40 14.82 0.00 3.56
160 161 2.516695 ATCGCGCCATGGATTGCA 60.517 55.556 18.40 7.21 0.00 4.08
161 162 2.120282 ATCGCGCCATGGATTGCAA 61.120 52.632 18.40 0.00 0.00 4.08
162 163 1.457823 ATCGCGCCATGGATTGCAAT 61.458 50.000 18.40 12.83 0.00 3.56
163 164 1.227031 CGCGCCATGGATTGCAATT 60.227 52.632 18.40 0.00 0.00 2.32
164 165 0.806884 CGCGCCATGGATTGCAATTT 60.807 50.000 18.40 0.00 0.00 1.82
165 166 0.932399 GCGCCATGGATTGCAATTTC 59.068 50.000 18.40 9.81 0.00 2.17
166 167 1.472026 GCGCCATGGATTGCAATTTCT 60.472 47.619 18.40 0.00 0.00 2.52
167 168 2.223782 GCGCCATGGATTGCAATTTCTA 60.224 45.455 18.40 0.38 0.00 2.10
168 169 3.635331 CGCCATGGATTGCAATTTCTAG 58.365 45.455 18.40 4.50 0.00 2.43
169 170 3.551454 CGCCATGGATTGCAATTTCTAGG 60.551 47.826 18.40 12.86 0.00 3.02
170 171 3.243975 GCCATGGATTGCAATTTCTAGGG 60.244 47.826 18.40 12.64 0.00 3.53
171 172 3.962718 CCATGGATTGCAATTTCTAGGGT 59.037 43.478 14.33 0.00 0.00 4.34
172 173 4.406649 CCATGGATTGCAATTTCTAGGGTT 59.593 41.667 14.33 0.00 0.00 4.11
173 174 5.104817 CCATGGATTGCAATTTCTAGGGTTT 60.105 40.000 14.33 0.00 0.00 3.27
174 175 6.408869 CATGGATTGCAATTTCTAGGGTTTT 58.591 36.000 14.33 0.00 0.00 2.43
175 176 5.792741 TGGATTGCAATTTCTAGGGTTTTG 58.207 37.500 14.33 0.00 0.00 2.44
176 177 5.306678 TGGATTGCAATTTCTAGGGTTTTGT 59.693 36.000 14.33 0.00 0.00 2.83
177 178 6.183361 TGGATTGCAATTTCTAGGGTTTTGTT 60.183 34.615 14.33 0.00 0.00 2.83
183 184 2.757894 TCTAGGGTTTTGTTTGGGCA 57.242 45.000 0.00 0.00 0.00 5.36
186 187 0.829990 AGGGTTTTGTTTGGGCAGTG 59.170 50.000 0.00 0.00 0.00 3.66
189 190 1.650825 GTTTTGTTTGGGCAGTGGTG 58.349 50.000 0.00 0.00 0.00 4.17
203 204 0.036010 GTGGTGATGGAGTGTCCTGG 60.036 60.000 0.00 0.00 37.46 4.45
209 210 4.163458 GGTGATGGAGTGTCCTGGTATTTA 59.837 45.833 0.00 0.00 37.46 1.40
210 211 5.163195 GGTGATGGAGTGTCCTGGTATTTAT 60.163 44.000 0.00 0.00 37.46 1.40
211 212 5.760253 GTGATGGAGTGTCCTGGTATTTATG 59.240 44.000 0.00 0.00 37.46 1.90
213 214 4.367166 TGGAGTGTCCTGGTATTTATGGA 58.633 43.478 0.00 0.00 37.46 3.41
214 215 4.408921 TGGAGTGTCCTGGTATTTATGGAG 59.591 45.833 0.00 0.00 37.46 3.86
217 218 4.227300 AGTGTCCTGGTATTTATGGAGCAA 59.773 41.667 0.00 0.00 0.00 3.91
218 219 4.947388 GTGTCCTGGTATTTATGGAGCAAA 59.053 41.667 0.00 0.00 0.00 3.68
220 221 6.096846 GTGTCCTGGTATTTATGGAGCAAAAT 59.903 38.462 0.00 0.00 0.00 1.82
222 223 7.836685 TGTCCTGGTATTTATGGAGCAAAATTA 59.163 33.333 0.00 0.00 0.00 1.40
223 224 8.691797 GTCCTGGTATTTATGGAGCAAAATTAA 58.308 33.333 0.00 0.00 0.00 1.40
224 225 8.691797 TCCTGGTATTTATGGAGCAAAATTAAC 58.308 33.333 0.00 0.00 0.00 2.01
225 226 7.926018 CCTGGTATTTATGGAGCAAAATTAACC 59.074 37.037 0.00 0.00 29.84 2.85
226 227 8.367660 TGGTATTTATGGAGCAAAATTAACCA 57.632 30.769 0.00 0.00 33.99 3.67
227 228 8.254508 TGGTATTTATGGAGCAAAATTAACCAC 58.745 33.333 0.00 0.00 32.57 4.16
228 229 8.474831 GGTATTTATGGAGCAAAATTAACCACT 58.525 33.333 0.00 0.00 33.38 4.00
229 230 9.301153 GTATTTATGGAGCAAAATTAACCACTG 57.699 33.333 0.00 0.00 33.38 3.66
230 231 4.806640 ATGGAGCAAAATTAACCACTGG 57.193 40.909 0.00 0.00 33.38 4.00
231 232 3.571590 TGGAGCAAAATTAACCACTGGT 58.428 40.909 0.00 0.00 37.65 4.00
232 233 3.320541 TGGAGCAAAATTAACCACTGGTG 59.679 43.478 0.00 0.00 35.34 4.17
246 247 1.623811 ACTGGTGGTGATGGAGTACAC 59.376 52.381 0.00 0.00 36.44 2.90
297 298 4.201920 GGGAAATTATCACTCGAACTTGCC 60.202 45.833 0.00 0.00 0.00 4.52
299 300 2.004583 TTATCACTCGAACTTGCCCG 57.995 50.000 0.00 0.00 0.00 6.13
324 325 9.162793 CGTATTGCATCAATAATTGAAGAGTTC 57.837 33.333 1.31 0.00 43.95 3.01
366 367 9.617523 GTACTATATATTCTACTCCCTCTGACC 57.382 40.741 0.00 0.00 0.00 4.02
367 368 7.645002 ACTATATATTCTACTCCCTCTGACCC 58.355 42.308 0.00 0.00 0.00 4.46
368 369 4.834406 ATATTCTACTCCCTCTGACCCA 57.166 45.455 0.00 0.00 0.00 4.51
369 370 3.491766 ATTCTACTCCCTCTGACCCAA 57.508 47.619 0.00 0.00 0.00 4.12
370 371 3.269592 TTCTACTCCCTCTGACCCAAA 57.730 47.619 0.00 0.00 0.00 3.28
371 372 3.269592 TCTACTCCCTCTGACCCAAAA 57.730 47.619 0.00 0.00 0.00 2.44
372 373 3.803340 TCTACTCCCTCTGACCCAAAAT 58.197 45.455 0.00 0.00 0.00 1.82
373 374 4.955335 TCTACTCCCTCTGACCCAAAATA 58.045 43.478 0.00 0.00 0.00 1.40
374 375 5.347124 TCTACTCCCTCTGACCCAAAATAA 58.653 41.667 0.00 0.00 0.00 1.40
375 376 4.576330 ACTCCCTCTGACCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
376 377 3.916989 ACTCCCTCTGACCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
377 378 4.263506 ACTCCCTCTGACCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
378 379 3.655777 TCCCTCTGACCCAAAATAAGTGT 59.344 43.478 0.00 0.00 0.00 3.55
379 380 4.010349 CCCTCTGACCCAAAATAAGTGTC 58.990 47.826 0.00 0.00 0.00 3.67
380 381 3.684788 CCTCTGACCCAAAATAAGTGTCG 59.315 47.826 0.00 0.00 0.00 4.35
381 382 3.071479 TCTGACCCAAAATAAGTGTCGC 58.929 45.455 0.00 0.00 0.00 5.19
382 383 1.801771 TGACCCAAAATAAGTGTCGCG 59.198 47.619 0.00 0.00 0.00 5.87
383 384 1.129811 GACCCAAAATAAGTGTCGCGG 59.870 52.381 6.13 0.00 0.00 6.46
384 385 1.161843 CCCAAAATAAGTGTCGCGGT 58.838 50.000 6.13 0.00 0.00 5.68
385 386 1.538075 CCCAAAATAAGTGTCGCGGTT 59.462 47.619 6.13 0.00 0.00 4.44
386 387 2.030628 CCCAAAATAAGTGTCGCGGTTT 60.031 45.455 6.13 0.00 0.00 3.27
387 388 3.551250 CCCAAAATAAGTGTCGCGGTTTT 60.551 43.478 6.13 0.00 0.00 2.43
388 389 3.423867 CCAAAATAAGTGTCGCGGTTTTG 59.576 43.478 6.13 11.78 36.70 2.44
389 390 4.283678 CAAAATAAGTGTCGCGGTTTTGA 58.716 39.130 6.13 0.00 38.26 2.69
390 391 4.555348 AAATAAGTGTCGCGGTTTTGAA 57.445 36.364 6.13 0.00 0.00 2.69
391 392 3.531262 ATAAGTGTCGCGGTTTTGAAC 57.469 42.857 6.13 0.00 0.00 3.18
392 393 1.375551 AAGTGTCGCGGTTTTGAACT 58.624 45.000 6.13 0.00 0.00 3.01
393 394 2.228138 AGTGTCGCGGTTTTGAACTA 57.772 45.000 6.13 0.00 0.00 2.24
394 395 2.553086 AGTGTCGCGGTTTTGAACTAA 58.447 42.857 6.13 0.00 0.00 2.24
395 396 2.286025 AGTGTCGCGGTTTTGAACTAAC 59.714 45.455 6.13 0.00 0.00 2.34
396 397 2.286025 GTGTCGCGGTTTTGAACTAACT 59.714 45.455 6.13 0.00 0.00 2.24
397 398 2.937799 TGTCGCGGTTTTGAACTAACTT 59.062 40.909 6.13 0.00 0.00 2.66
398 399 3.374678 TGTCGCGGTTTTGAACTAACTTT 59.625 39.130 6.13 0.00 0.00 2.66
399 400 3.722289 GTCGCGGTTTTGAACTAACTTTG 59.278 43.478 6.13 0.00 0.00 2.77
400 401 3.622163 TCGCGGTTTTGAACTAACTTTGA 59.378 39.130 6.13 0.00 0.00 2.69
401 402 4.094590 TCGCGGTTTTGAACTAACTTTGAA 59.905 37.500 6.13 0.00 0.00 2.69
402 403 4.203563 CGCGGTTTTGAACTAACTTTGAAC 59.796 41.667 0.00 0.00 0.00 3.18
403 404 5.337554 GCGGTTTTGAACTAACTTTGAACT 58.662 37.500 0.00 0.00 0.00 3.01
404 405 5.229260 GCGGTTTTGAACTAACTTTGAACTG 59.771 40.000 0.00 0.00 0.00 3.16
405 406 6.548171 CGGTTTTGAACTAACTTTGAACTGA 58.452 36.000 0.00 0.00 0.00 3.41
406 407 6.687105 CGGTTTTGAACTAACTTTGAACTGAG 59.313 38.462 0.00 0.00 0.00 3.35
407 408 6.972901 GGTTTTGAACTAACTTTGAACTGAGG 59.027 38.462 0.00 0.00 0.00 3.86
408 409 7.362660 GGTTTTGAACTAACTTTGAACTGAGGT 60.363 37.037 0.00 0.00 0.00 3.85
409 410 7.696992 TTTGAACTAACTTTGAACTGAGGTT 57.303 32.000 0.00 0.00 38.52 3.50
410 411 8.795842 TTTGAACTAACTTTGAACTGAGGTTA 57.204 30.769 0.00 0.00 35.58 2.85
411 412 8.433421 TTGAACTAACTTTGAACTGAGGTTAG 57.567 34.615 0.00 0.00 42.59 2.34
422 423 5.500645 AACTGAGGTTAGTTCAAAACTGC 57.499 39.130 2.65 0.00 42.84 4.40
423 424 3.560068 ACTGAGGTTAGTTCAAAACTGCG 59.440 43.478 2.65 0.00 42.84 5.18
424 425 3.799366 TGAGGTTAGTTCAAAACTGCGA 58.201 40.909 2.65 0.00 42.84 5.10
425 426 3.807622 TGAGGTTAGTTCAAAACTGCGAG 59.192 43.478 2.65 0.00 42.84 5.03
426 427 3.805207 AGGTTAGTTCAAAACTGCGAGT 58.195 40.909 2.65 0.00 42.84 4.18
427 428 3.808174 AGGTTAGTTCAAAACTGCGAGTC 59.192 43.478 2.65 0.00 42.84 3.36
428 429 3.808174 GGTTAGTTCAAAACTGCGAGTCT 59.192 43.478 2.65 0.00 42.84 3.24
429 430 4.318831 GGTTAGTTCAAAACTGCGAGTCTG 60.319 45.833 2.65 0.00 42.84 3.51
430 431 1.599542 AGTTCAAAACTGCGAGTCTGC 59.400 47.619 0.00 0.77 41.01 4.26
431 432 0.581529 TTCAAAACTGCGAGTCTGCG 59.418 50.000 0.00 0.00 37.81 5.18
432 433 0.249280 TCAAAACTGCGAGTCTGCGA 60.249 50.000 0.00 0.00 37.81 5.10
433 434 0.111089 CAAAACTGCGAGTCTGCGAC 60.111 55.000 0.00 1.15 37.81 5.19
434 435 1.548973 AAAACTGCGAGTCTGCGACG 61.549 55.000 0.00 0.00 37.67 5.12
439 440 4.692129 CGAGTCTGCGACGCTTAT 57.308 55.556 22.08 4.20 37.67 1.73
440 441 2.945315 CGAGTCTGCGACGCTTATT 58.055 52.632 22.08 5.55 37.67 1.40
441 442 2.101053 CGAGTCTGCGACGCTTATTA 57.899 50.000 22.08 0.00 37.67 0.98
442 443 2.651701 CGAGTCTGCGACGCTTATTAT 58.348 47.619 22.08 1.91 37.67 1.28
443 444 2.402049 CGAGTCTGCGACGCTTATTATG 59.598 50.000 22.08 1.83 37.67 1.90
444 445 2.726760 GAGTCTGCGACGCTTATTATGG 59.273 50.000 22.08 1.50 37.67 2.74
445 446 2.361119 AGTCTGCGACGCTTATTATGGA 59.639 45.455 22.08 3.75 37.67 3.41
446 447 3.005897 AGTCTGCGACGCTTATTATGGAT 59.994 43.478 22.08 0.00 37.67 3.41
447 448 3.365220 GTCTGCGACGCTTATTATGGATC 59.635 47.826 22.08 0.00 0.00 3.36
448 449 2.324860 TGCGACGCTTATTATGGATCG 58.675 47.619 22.08 0.00 0.00 3.69
449 450 1.654105 GCGACGCTTATTATGGATCGG 59.346 52.381 13.73 0.00 0.00 4.18
450 451 2.670229 GCGACGCTTATTATGGATCGGA 60.670 50.000 13.73 0.00 0.00 4.55
451 452 3.571571 CGACGCTTATTATGGATCGGAA 58.428 45.455 0.00 0.00 0.00 4.30
452 453 3.608506 CGACGCTTATTATGGATCGGAAG 59.391 47.826 0.00 0.00 0.00 3.46
453 454 3.926616 ACGCTTATTATGGATCGGAAGG 58.073 45.455 0.00 0.00 0.00 3.46
454 455 3.576982 ACGCTTATTATGGATCGGAAGGA 59.423 43.478 0.00 0.00 0.00 3.36
455 456 4.177026 CGCTTATTATGGATCGGAAGGAG 58.823 47.826 0.00 0.00 0.00 3.69
456 457 4.322049 CGCTTATTATGGATCGGAAGGAGT 60.322 45.833 0.00 0.00 0.00 3.85
457 458 5.105877 CGCTTATTATGGATCGGAAGGAGTA 60.106 44.000 0.00 0.00 0.00 2.59
458 459 6.405953 CGCTTATTATGGATCGGAAGGAGTAT 60.406 42.308 0.00 0.00 0.00 2.12
459 460 7.201794 CGCTTATTATGGATCGGAAGGAGTATA 60.202 40.741 0.00 0.00 0.00 1.47
485 486 6.916360 ATATGGCCATACGAAAATTCCATT 57.084 33.333 27.72 4.17 34.91 3.16
501 502 2.237143 TCCATTGAGACACCTAAGCCTG 59.763 50.000 0.00 0.00 0.00 4.85
589 590 7.114095 TCTTATAGGCGACCAAAAGGTATTTT 58.886 34.615 0.00 0.00 39.22 1.82
602 603 4.650972 AGGTATTTTGTGAGGCCTACAA 57.349 40.909 4.42 14.14 36.34 2.41
611 612 3.388024 TGTGAGGCCTACAAGATGGATAC 59.612 47.826 4.42 0.00 0.00 2.24
613 614 8.313286 TTGTGAGGCCTACAAGATGGATACAG 62.313 46.154 4.42 0.00 40.89 2.74
663 664 7.920682 ACATGATTTACTGTCAAAGGTTGAAAC 59.079 33.333 0.00 0.00 42.15 2.78
675 676 4.010667 AGGTTGAAACGCCTTGTGTATA 57.989 40.909 0.00 0.00 0.00 1.47
687 688 9.555727 AACGCCTTGTGTATATTTGAACTATAT 57.444 29.630 0.00 0.00 0.00 0.86
704 705 7.120579 TGAACTATATGTGATTGAAAAGCCGTT 59.879 33.333 0.00 0.00 0.00 4.44
720 722 8.542497 AAAAGCCGTTTTTCTTTTCTTTTAGT 57.458 26.923 0.00 0.00 37.84 2.24
721 723 9.642327 AAAAGCCGTTTTTCTTTTCTTTTAGTA 57.358 25.926 0.00 0.00 37.84 1.82
722 724 9.811995 AAAGCCGTTTTTCTTTTCTTTTAGTAT 57.188 25.926 0.00 0.00 0.00 2.12
725 727 9.888878 GCCGTTTTTCTTTTCTTTTAGTATAGT 57.111 29.630 0.00 0.00 0.00 2.12
748 750 8.309163 AGTATACGTGTAGACAAGCTATCTAC 57.691 38.462 22.64 22.64 45.92 2.59
750 752 5.738118 ACGTGTAGACAAGCTATCTACTC 57.262 43.478 26.54 23.31 45.91 2.59
752 754 5.738118 GTGTAGACAAGCTATCTACTCGT 57.262 43.478 26.54 1.98 45.91 4.18
754 756 5.966503 GTGTAGACAAGCTATCTACTCGTTG 59.033 44.000 26.54 6.44 45.91 4.10
755 757 5.878669 TGTAGACAAGCTATCTACTCGTTGA 59.121 40.000 26.54 11.80 45.91 3.18
756 758 6.542735 TGTAGACAAGCTATCTACTCGTTGAT 59.457 38.462 26.54 0.19 45.91 2.57
758 760 7.753309 AGACAAGCTATCTACTCGTTGATAT 57.247 36.000 0.00 0.00 29.63 1.63
759 761 7.589395 AGACAAGCTATCTACTCGTTGATATG 58.411 38.462 0.00 2.08 29.63 1.78
760 762 6.682746 ACAAGCTATCTACTCGTTGATATGG 58.317 40.000 0.00 0.00 29.63 2.74
797 799 3.080300 ACCATTTACATTCCTTGCGGA 57.920 42.857 0.00 0.00 37.60 5.54
801 803 4.353737 CATTTACATTCCTTGCGGACATG 58.646 43.478 0.00 0.00 39.60 3.21
802 804 2.779755 TACATTCCTTGCGGACATGT 57.220 45.000 0.00 0.00 39.60 3.21
877 883 2.517959 TCCAACTGCAGAAATTGAGGG 58.482 47.619 23.35 9.24 0.00 4.30
884 890 1.887956 GCAGAAATTGAGGGGCACAGA 60.888 52.381 0.00 0.00 0.00 3.41
895 901 1.202348 GGGGCACAGAATAACACAAGC 59.798 52.381 0.00 0.00 0.00 4.01
973 979 2.191128 AATGCAGAACCTGACTGGAC 57.809 50.000 5.22 0.00 38.40 4.02
1070 1076 8.831715 AACCATTCAAATTCAGTGGTAATTTC 57.168 30.769 5.31 0.00 42.05 2.17
1072 1078 7.235399 ACCATTCAAATTCAGTGGTAATTTCCT 59.765 33.333 2.53 0.00 41.15 3.36
1076 1082 7.826690 TCAAATTCAGTGGTAATTTCCTTAGC 58.173 34.615 2.53 0.00 35.00 3.09
1097 1104 3.804036 CCATGCATCTTTGATTGGCATT 58.196 40.909 0.00 0.00 42.81 3.56
1119 1126 9.987272 GCATTAAGGCATATTTTCCTTTCTATT 57.013 29.630 7.33 0.00 42.32 1.73
1124 1131 8.926092 AGGCATATTTTCCTTTCTATTACTCC 57.074 34.615 0.00 0.00 0.00 3.85
1125 1132 7.945109 AGGCATATTTTCCTTTCTATTACTCCC 59.055 37.037 0.00 0.00 0.00 4.30
1126 1133 7.945109 GGCATATTTTCCTTTCTATTACTCCCT 59.055 37.037 0.00 0.00 0.00 4.20
1127 1134 9.004717 GCATATTTTCCTTTCTATTACTCCCTC 57.995 37.037 0.00 0.00 0.00 4.30
1128 1135 9.508642 CATATTTTCCTTTCTATTACTCCCTCC 57.491 37.037 0.00 0.00 0.00 4.30
1129 1136 6.963117 TTTTCCTTTCTATTACTCCCTCCA 57.037 37.500 0.00 0.00 0.00 3.86
1130 1137 7.525158 TTTTCCTTTCTATTACTCCCTCCAT 57.475 36.000 0.00 0.00 0.00 3.41
1131 1138 7.525158 TTTCCTTTCTATTACTCCCTCCATT 57.475 36.000 0.00 0.00 0.00 3.16
1132 1139 6.749036 TCCTTTCTATTACTCCCTCCATTC 57.251 41.667 0.00 0.00 0.00 2.67
1133 1140 5.607171 TCCTTTCTATTACTCCCTCCATTCC 59.393 44.000 0.00 0.00 0.00 3.01
1134 1141 5.369699 CCTTTCTATTACTCCCTCCATTCCA 59.630 44.000 0.00 0.00 0.00 3.53
1135 1142 6.126478 CCTTTCTATTACTCCCTCCATTCCAA 60.126 42.308 0.00 0.00 0.00 3.53
1136 1143 6.901615 TTCTATTACTCCCTCCATTCCAAA 57.098 37.500 0.00 0.00 0.00 3.28
1137 1144 6.901615 TCTATTACTCCCTCCATTCCAAAA 57.098 37.500 0.00 0.00 0.00 2.44
1138 1145 7.465900 TCTATTACTCCCTCCATTCCAAAAT 57.534 36.000 0.00 0.00 0.00 1.82
1139 1146 8.575736 TCTATTACTCCCTCCATTCCAAAATA 57.424 34.615 0.00 0.00 0.00 1.40
1140 1147 8.660435 TCTATTACTCCCTCCATTCCAAAATAG 58.340 37.037 0.00 0.00 0.00 1.73
1141 1148 6.901615 TTACTCCCTCCATTCCAAAATAGA 57.098 37.500 0.00 0.00 0.00 1.98
1142 1149 7.465900 TTACTCCCTCCATTCCAAAATAGAT 57.534 36.000 0.00 0.00 0.00 1.98
1143 1150 5.699143 ACTCCCTCCATTCCAAAATAGATG 58.301 41.667 0.00 0.00 0.00 2.90
1144 1151 5.433051 ACTCCCTCCATTCCAAAATAGATGA 59.567 40.000 0.00 0.00 0.00 2.92
1145 1152 5.945310 TCCCTCCATTCCAAAATAGATGAG 58.055 41.667 0.00 0.00 0.00 2.90
1146 1153 5.433051 TCCCTCCATTCCAAAATAGATGAGT 59.567 40.000 0.00 0.00 0.00 3.41
1147 1154 5.767168 CCCTCCATTCCAAAATAGATGAGTC 59.233 44.000 0.00 0.00 0.00 3.36
1148 1155 6.359804 CCTCCATTCCAAAATAGATGAGTCA 58.640 40.000 0.00 0.00 0.00 3.41
1149 1156 7.002879 CCTCCATTCCAAAATAGATGAGTCAT 58.997 38.462 4.98 4.98 0.00 3.06
1150 1157 7.174599 CCTCCATTCCAAAATAGATGAGTCATC 59.825 40.741 23.20 23.20 40.80 2.92
1163 1170 6.292389 GATGAGTCATCTATTTTGGAACGG 57.708 41.667 23.33 0.00 37.82 4.44
1164 1171 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1165 1172 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1166 1173 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1167 1174 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1168 1175 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1169 1176 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1244 1251 5.817296 TCCTTGTGTACATATTCTGCATGAC 59.183 40.000 0.00 0.00 0.00 3.06
1359 1366 2.838202 AGCCTTTCTTCGTATGGAGGAA 59.162 45.455 0.00 0.00 38.80 3.36
1479 1486 7.530435 TCCTCATATTCTATGAAGTCTCAGGA 58.470 38.462 0.00 0.00 34.23 3.86
1695 1702 2.598394 TGGGCAAAGTGGCTCAGC 60.598 61.111 1.60 0.00 39.92 4.26
1755 1762 4.521130 TGACTATGTCAAGTCCAGTGTC 57.479 45.455 10.66 0.00 44.40 3.67
1839 1846 9.307121 CTTACTTACATGAACTACAGAGGATTG 57.693 37.037 0.00 0.00 0.00 2.67
1914 1921 6.618287 TTCTTTGTAATGGGATTGATAGCG 57.382 37.500 0.00 0.00 0.00 4.26
1923 1930 2.808543 GGGATTGATAGCGATTCCACAC 59.191 50.000 0.06 0.00 34.07 3.82
2193 2200 6.808212 ACGGATATTTTTCAGACATTGCAAAG 59.192 34.615 1.71 0.19 0.00 2.77
2566 2573 1.006805 GGCTCCGTCCTGATGATCG 60.007 63.158 0.00 0.00 0.00 3.69
2577 2584 1.107538 TGATGATCGTCCCTCCGACC 61.108 60.000 12.42 0.00 40.08 4.79
2600 2607 1.148157 CTGATCGTCGTGGTGATGGC 61.148 60.000 0.00 0.00 34.17 4.40
2632 2639 1.376424 AAGGTGATGGCTGTGAGCG 60.376 57.895 0.00 0.00 43.62 5.03
2739 2746 2.108566 CTGCCCGATCTGCTGGAG 59.891 66.667 5.79 0.00 0.00 3.86
2740 2747 2.685017 TGCCCGATCTGCTGGAGT 60.685 61.111 5.79 0.00 0.00 3.85
2748 2755 1.040339 ATCTGCTGGAGTCCTCGTCC 61.040 60.000 11.33 0.00 34.31 4.79
2769 2776 3.134127 GCCGCCCAAGATGACACC 61.134 66.667 0.00 0.00 0.00 4.16
2801 2808 5.414144 TCGTGGTCTGATTTATGATGCAAAA 59.586 36.000 0.00 0.00 0.00 2.44
2861 2880 7.578852 CATCATATGTGCTGTTGTATACCAAG 58.421 38.462 1.90 0.00 32.51 3.61
2872 2891 5.703592 TGTTGTATACCAAGGTGTTGTCATC 59.296 40.000 1.07 0.00 32.51 2.92
2873 2892 5.491323 TGTATACCAAGGTGTTGTCATCA 57.509 39.130 1.07 0.00 30.95 3.07
2874 2893 5.487433 TGTATACCAAGGTGTTGTCATCAG 58.513 41.667 1.07 0.00 30.95 2.90
2876 2895 3.576078 ACCAAGGTGTTGTCATCAGAA 57.424 42.857 0.00 0.00 30.95 3.02
2877 2896 3.897239 ACCAAGGTGTTGTCATCAGAAA 58.103 40.909 0.00 0.00 30.95 2.52
2878 2897 3.885297 ACCAAGGTGTTGTCATCAGAAAG 59.115 43.478 0.00 0.00 30.95 2.62
2883 2902 4.823989 AGGTGTTGTCATCAGAAAGAAAGG 59.176 41.667 0.00 0.00 0.00 3.11
2893 2912 9.612066 GTCATCAGAAAGAAAGGAATAGAAGAT 57.388 33.333 0.00 0.00 0.00 2.40
2922 2996 5.334319 TGAGCGCATTTAGAAACATCATTG 58.666 37.500 11.47 0.00 0.00 2.82
2923 2997 4.107622 AGCGCATTTAGAAACATCATTGC 58.892 39.130 11.47 0.00 0.00 3.56
3001 3139 4.580167 TGGGATATAGTGCATGCTGAAAAC 59.420 41.667 20.33 8.19 0.00 2.43
3019 3157 5.411361 TGAAAACAAGTGGTAGATTGATCCG 59.589 40.000 0.00 0.00 0.00 4.18
3028 3166 6.594159 AGTGGTAGATTGATCCGTGTTAAAAG 59.406 38.462 0.00 0.00 0.00 2.27
3029 3167 6.370718 GTGGTAGATTGATCCGTGTTAAAAGT 59.629 38.462 0.00 0.00 0.00 2.66
3030 3168 6.370442 TGGTAGATTGATCCGTGTTAAAAGTG 59.630 38.462 0.00 0.00 0.00 3.16
3129 4821 4.785453 GAACGCTCCAGCCTGGGG 62.785 72.222 11.68 9.05 42.32 4.96
3135 4827 0.615827 GCTCCAGCCTGGGGAAAAAT 60.616 55.000 16.89 0.00 41.85 1.82
3239 4943 2.645567 CGTCGTCACAGCCACTCT 59.354 61.111 0.00 0.00 0.00 3.24
3250 4954 1.069090 GCCACTCTCACCGTTGTCA 59.931 57.895 0.00 0.00 0.00 3.58
3283 5068 3.733960 CCGGAGCTCGTCGTCACA 61.734 66.667 7.83 0.00 37.11 3.58
3307 5092 3.699894 CGACTGGCCAGCCACTCT 61.700 66.667 33.06 12.34 41.89 3.24
3308 5093 2.267324 GACTGGCCAGCCACTCTC 59.733 66.667 33.06 17.52 41.89 3.20
3309 5094 2.527624 ACTGGCCAGCCACTCTCA 60.528 61.111 33.06 0.00 41.89 3.27
3310 5095 2.046507 CTGGCCAGCCACTCTCAC 60.047 66.667 22.33 0.00 41.89 3.51
3311 5096 3.618780 CTGGCCAGCCACTCTCACC 62.619 68.421 22.33 0.00 41.89 4.02
3312 5097 4.767255 GGCCAGCCACTCTCACCG 62.767 72.222 3.12 0.00 35.81 4.94
3313 5098 4.008933 GCCAGCCACTCTCACCGT 62.009 66.667 0.00 0.00 0.00 4.83
3314 5099 2.743718 CCAGCCACTCTCACCGTT 59.256 61.111 0.00 0.00 0.00 4.44
3324 5109 0.249447 TCTCACCGTTGTCACAGCTG 60.249 55.000 13.48 13.48 0.00 4.24
3326 5111 0.809636 TCACCGTTGTCACAGCTGTG 60.810 55.000 36.07 36.07 46.91 3.66
3379 5221 1.455383 CCTGGCCAGTCGCAACTTTT 61.455 55.000 30.63 0.00 40.31 2.27
3381 5223 0.749818 TGGCCAGTCGCAACTTTTCA 60.750 50.000 0.00 0.00 40.31 2.69
3524 5385 1.134401 AGGACGGTGTGCATATCCAAG 60.134 52.381 4.62 0.00 31.41 3.61
3539 5400 1.134818 TCCAAGATGAACCGACCGATG 60.135 52.381 0.00 0.00 0.00 3.84
3563 5424 7.648142 TGAACAATCCAGTCAACAGTAAAATC 58.352 34.615 0.00 0.00 0.00 2.17
3564 5425 7.284261 TGAACAATCCAGTCAACAGTAAAATCA 59.716 33.333 0.00 0.00 0.00 2.57
3565 5426 7.206981 ACAATCCAGTCAACAGTAAAATCAG 57.793 36.000 0.00 0.00 0.00 2.90
3566 5427 6.998074 ACAATCCAGTCAACAGTAAAATCAGA 59.002 34.615 0.00 0.00 0.00 3.27
3567 5428 7.041098 ACAATCCAGTCAACAGTAAAATCAGAC 60.041 37.037 0.00 0.00 0.00 3.51
3593 5454 3.618594 CCTGTCAATAATCACTGGACACG 59.381 47.826 0.00 0.00 34.97 4.49
3606 5467 1.153978 GACACGCCCGATGAACGTA 60.154 57.895 0.00 0.00 38.09 3.57
3614 5475 1.876714 CGATGAACGTACCCCGCTG 60.877 63.158 0.00 0.00 41.42 5.18
3628 5489 1.684869 CCCGCTGTATTCCCCACAAAT 60.685 52.381 0.00 0.00 0.00 2.32
3632 5493 3.242608 CGCTGTATTCCCCACAAATAACG 60.243 47.826 0.00 0.00 0.00 3.18
3716 9323 2.817844 AGCCGAACCACAACCTTATTTC 59.182 45.455 0.00 0.00 0.00 2.17
3720 9327 3.744426 CGAACCACAACCTTATTTCGAGT 59.256 43.478 0.00 0.00 38.44 4.18
3756 9363 5.430089 AGGTAAGCACAATCTCCCTATCTTT 59.570 40.000 0.00 0.00 0.00 2.52
3766 9373 5.359194 TCTCCCTATCTTTGGACATCAAC 57.641 43.478 0.00 0.00 34.67 3.18
3772 9379 6.604795 CCCTATCTTTGGACATCAACATCTTT 59.395 38.462 0.00 0.00 34.67 2.52
3773 9380 7.123247 CCCTATCTTTGGACATCAACATCTTTT 59.877 37.037 0.00 0.00 34.67 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.764010 TGCCGGAGTATAAGAAGCAGAA 59.236 45.455 5.05 0.00 0.00 3.02
29 30 2.159099 TGTGCCGGAGTATAAGAAGCAG 60.159 50.000 5.05 0.00 0.00 4.24
80 81 0.107214 AGAGCACGGGAGAGAGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
81 82 0.393673 CAGAGCACGGGAGAGAGAGA 60.394 60.000 0.00 0.00 0.00 3.10
82 83 0.679640 ACAGAGCACGGGAGAGAGAG 60.680 60.000 0.00 0.00 0.00 3.20
83 84 0.962855 CACAGAGCACGGGAGAGAGA 60.963 60.000 0.00 0.00 0.00 3.10
114 115 4.838152 AATCTGCCACGGCGCGAT 62.838 61.111 12.10 5.29 45.51 4.58
126 127 1.468565 CGATGGCCAGCACAAAATCTG 60.469 52.381 22.95 0.00 0.00 2.90
148 149 3.243975 CCCTAGAAATTGCAATCCATGGC 60.244 47.826 13.38 0.00 0.00 4.40
158 159 4.754618 CCCAAACAAAACCCTAGAAATTGC 59.245 41.667 0.00 0.00 0.00 3.56
159 160 4.754618 GCCCAAACAAAACCCTAGAAATTG 59.245 41.667 0.00 0.00 0.00 2.32
160 161 4.410555 TGCCCAAACAAAACCCTAGAAATT 59.589 37.500 0.00 0.00 0.00 1.82
161 162 3.970640 TGCCCAAACAAAACCCTAGAAAT 59.029 39.130 0.00 0.00 0.00 2.17
162 163 3.375699 TGCCCAAACAAAACCCTAGAAA 58.624 40.909 0.00 0.00 0.00 2.52
163 164 2.962421 CTGCCCAAACAAAACCCTAGAA 59.038 45.455 0.00 0.00 0.00 2.10
164 165 2.091555 ACTGCCCAAACAAAACCCTAGA 60.092 45.455 0.00 0.00 0.00 2.43
165 166 2.035832 CACTGCCCAAACAAAACCCTAG 59.964 50.000 0.00 0.00 0.00 3.02
166 167 2.035632 CACTGCCCAAACAAAACCCTA 58.964 47.619 0.00 0.00 0.00 3.53
167 168 0.829990 CACTGCCCAAACAAAACCCT 59.170 50.000 0.00 0.00 0.00 4.34
168 169 0.179059 CCACTGCCCAAACAAAACCC 60.179 55.000 0.00 0.00 0.00 4.11
169 170 0.539518 ACCACTGCCCAAACAAAACC 59.460 50.000 0.00 0.00 0.00 3.27
170 171 1.205893 TCACCACTGCCCAAACAAAAC 59.794 47.619 0.00 0.00 0.00 2.43
171 172 1.561643 TCACCACTGCCCAAACAAAA 58.438 45.000 0.00 0.00 0.00 2.44
172 173 1.411977 CATCACCACTGCCCAAACAAA 59.588 47.619 0.00 0.00 0.00 2.83
173 174 1.039068 CATCACCACTGCCCAAACAA 58.961 50.000 0.00 0.00 0.00 2.83
174 175 0.827089 CCATCACCACTGCCCAAACA 60.827 55.000 0.00 0.00 0.00 2.83
175 176 0.539438 TCCATCACCACTGCCCAAAC 60.539 55.000 0.00 0.00 0.00 2.93
176 177 0.251297 CTCCATCACCACTGCCCAAA 60.251 55.000 0.00 0.00 0.00 3.28
177 178 1.379916 CTCCATCACCACTGCCCAA 59.620 57.895 0.00 0.00 0.00 4.12
183 184 0.979665 CAGGACACTCCATCACCACT 59.020 55.000 0.00 0.00 39.61 4.00
186 187 1.568504 TACCAGGACACTCCATCACC 58.431 55.000 0.00 0.00 39.61 4.02
189 190 5.071788 TCCATAAATACCAGGACACTCCATC 59.928 44.000 0.00 0.00 39.61 3.51
203 204 9.301153 CAGTGGTTAATTTTGCTCCATAAATAC 57.699 33.333 0.00 0.00 0.00 1.89
209 210 4.021192 CACCAGTGGTTAATTTTGCTCCAT 60.021 41.667 13.62 0.00 31.02 3.41
210 211 3.320541 CACCAGTGGTTAATTTTGCTCCA 59.679 43.478 13.62 0.00 31.02 3.86
211 212 3.306019 CCACCAGTGGTTAATTTTGCTCC 60.306 47.826 13.62 0.00 45.53 4.70
226 227 1.623811 GTGTACTCCATCACCACCAGT 59.376 52.381 0.00 0.00 0.00 4.00
227 228 1.404181 CGTGTACTCCATCACCACCAG 60.404 57.143 0.00 0.00 0.00 4.00
228 229 0.606096 CGTGTACTCCATCACCACCA 59.394 55.000 0.00 0.00 0.00 4.17
229 230 0.739813 GCGTGTACTCCATCACCACC 60.740 60.000 0.00 0.00 0.00 4.61
230 231 0.246635 AGCGTGTACTCCATCACCAC 59.753 55.000 0.00 0.00 0.00 4.16
231 232 0.973632 AAGCGTGTACTCCATCACCA 59.026 50.000 0.00 0.00 0.00 4.17
232 233 2.094762 AAAGCGTGTACTCCATCACC 57.905 50.000 0.00 0.00 0.00 4.02
233 234 4.491676 TCTAAAAGCGTGTACTCCATCAC 58.508 43.478 0.00 0.00 0.00 3.06
234 235 4.794278 TCTAAAAGCGTGTACTCCATCA 57.206 40.909 0.00 0.00 0.00 3.07
235 236 6.238130 GGATTTCTAAAAGCGTGTACTCCATC 60.238 42.308 0.00 0.00 0.00 3.51
246 247 9.831737 CCATAAATATCAGGATTTCTAAAAGCG 57.168 33.333 0.00 0.00 31.51 4.68
289 290 1.742831 TGATGCAATACGGGCAAGTTC 59.257 47.619 0.00 0.00 45.60 3.01
297 298 7.642669 ACTCTTCAATTATTGATGCAATACGG 58.357 34.615 8.56 0.65 39.84 4.02
346 347 5.942977 TGGGTCAGAGGGAGTAGAATATA 57.057 43.478 0.00 0.00 0.00 0.86
347 348 4.834406 TGGGTCAGAGGGAGTAGAATAT 57.166 45.455 0.00 0.00 0.00 1.28
348 349 4.620086 TTGGGTCAGAGGGAGTAGAATA 57.380 45.455 0.00 0.00 0.00 1.75
349 350 3.491766 TTGGGTCAGAGGGAGTAGAAT 57.508 47.619 0.00 0.00 0.00 2.40
350 351 3.269592 TTTGGGTCAGAGGGAGTAGAA 57.730 47.619 0.00 0.00 0.00 2.10
352 353 5.189934 ACTTATTTTGGGTCAGAGGGAGTAG 59.810 44.000 0.00 0.00 0.00 2.57
353 354 5.045869 CACTTATTTTGGGTCAGAGGGAGTA 60.046 44.000 0.00 0.00 0.00 2.59
354 355 3.916989 ACTTATTTTGGGTCAGAGGGAGT 59.083 43.478 0.00 0.00 0.00 3.85
355 356 4.263506 ACACTTATTTTGGGTCAGAGGGAG 60.264 45.833 0.00 0.00 0.00 4.30
356 357 3.655777 ACACTTATTTTGGGTCAGAGGGA 59.344 43.478 0.00 0.00 0.00 4.20
357 358 4.010349 GACACTTATTTTGGGTCAGAGGG 58.990 47.826 0.00 0.00 0.00 4.30
358 359 3.684788 CGACACTTATTTTGGGTCAGAGG 59.315 47.826 0.00 0.00 0.00 3.69
359 360 3.125316 GCGACACTTATTTTGGGTCAGAG 59.875 47.826 0.00 0.00 0.00 3.35
360 361 3.071479 GCGACACTTATTTTGGGTCAGA 58.929 45.455 0.00 0.00 0.00 3.27
362 363 1.801771 CGCGACACTTATTTTGGGTCA 59.198 47.619 0.00 0.00 0.00 4.02
363 364 1.129811 CCGCGACACTTATTTTGGGTC 59.870 52.381 8.23 0.00 0.00 4.46
364 365 1.161843 CCGCGACACTTATTTTGGGT 58.838 50.000 8.23 0.00 0.00 4.51
365 366 1.161843 ACCGCGACACTTATTTTGGG 58.838 50.000 8.23 0.00 0.00 4.12
366 367 2.981400 AACCGCGACACTTATTTTGG 57.019 45.000 8.23 0.00 0.00 3.28
367 368 4.283678 TCAAAACCGCGACACTTATTTTG 58.716 39.130 8.23 12.05 38.03 2.44
368 369 4.555348 TCAAAACCGCGACACTTATTTT 57.445 36.364 8.23 0.00 0.00 1.82
369 370 4.035909 AGTTCAAAACCGCGACACTTATTT 59.964 37.500 8.23 0.00 0.00 1.40
370 371 3.562557 AGTTCAAAACCGCGACACTTATT 59.437 39.130 8.23 0.00 0.00 1.40
371 372 3.135994 AGTTCAAAACCGCGACACTTAT 58.864 40.909 8.23 0.00 0.00 1.73
372 373 2.553086 AGTTCAAAACCGCGACACTTA 58.447 42.857 8.23 0.00 0.00 2.24
373 374 1.375551 AGTTCAAAACCGCGACACTT 58.624 45.000 8.23 0.00 0.00 3.16
374 375 2.228138 TAGTTCAAAACCGCGACACT 57.772 45.000 8.23 0.77 0.00 3.55
375 376 2.286025 AGTTAGTTCAAAACCGCGACAC 59.714 45.455 8.23 0.00 0.00 3.67
376 377 2.553086 AGTTAGTTCAAAACCGCGACA 58.447 42.857 8.23 0.00 0.00 4.35
377 378 3.597377 AAGTTAGTTCAAAACCGCGAC 57.403 42.857 8.23 0.00 0.00 5.19
378 379 3.622163 TCAAAGTTAGTTCAAAACCGCGA 59.378 39.130 8.23 0.00 0.00 5.87
379 380 3.942739 TCAAAGTTAGTTCAAAACCGCG 58.057 40.909 0.00 0.00 0.00 6.46
380 381 5.229260 CAGTTCAAAGTTAGTTCAAAACCGC 59.771 40.000 0.00 0.00 0.00 5.68
381 382 6.548171 TCAGTTCAAAGTTAGTTCAAAACCG 58.452 36.000 0.00 0.00 0.00 4.44
382 383 6.972901 CCTCAGTTCAAAGTTAGTTCAAAACC 59.027 38.462 0.00 0.00 0.00 3.27
383 384 7.535997 ACCTCAGTTCAAAGTTAGTTCAAAAC 58.464 34.615 0.00 0.00 0.00 2.43
384 385 7.696992 ACCTCAGTTCAAAGTTAGTTCAAAA 57.303 32.000 0.00 0.00 0.00 2.44
385 386 7.696992 AACCTCAGTTCAAAGTTAGTTCAAA 57.303 32.000 0.00 0.00 0.00 2.69
386 387 8.044908 ACTAACCTCAGTTCAAAGTTAGTTCAA 58.955 33.333 7.80 0.00 46.70 2.69
387 388 7.562135 ACTAACCTCAGTTCAAAGTTAGTTCA 58.438 34.615 7.80 0.00 46.70 3.18
400 401 4.035208 CGCAGTTTTGAACTAACCTCAGTT 59.965 41.667 0.00 0.00 40.46 3.16
401 402 3.560068 CGCAGTTTTGAACTAACCTCAGT 59.440 43.478 0.00 0.00 40.46 3.41
402 403 3.807622 TCGCAGTTTTGAACTAACCTCAG 59.192 43.478 0.00 0.00 40.46 3.35
403 404 3.799366 TCGCAGTTTTGAACTAACCTCA 58.201 40.909 0.00 0.00 40.46 3.86
404 405 3.808174 ACTCGCAGTTTTGAACTAACCTC 59.192 43.478 0.00 0.00 40.46 3.85
405 406 3.805207 ACTCGCAGTTTTGAACTAACCT 58.195 40.909 0.00 0.00 40.46 3.50
406 407 3.808174 AGACTCGCAGTTTTGAACTAACC 59.192 43.478 0.00 0.00 40.46 2.85
407 408 4.762809 CAGACTCGCAGTTTTGAACTAAC 58.237 43.478 0.00 0.00 40.46 2.34
408 409 3.247648 GCAGACTCGCAGTTTTGAACTAA 59.752 43.478 0.00 0.00 40.46 2.24
409 410 2.800544 GCAGACTCGCAGTTTTGAACTA 59.199 45.455 0.00 0.00 40.46 2.24
410 411 1.599542 GCAGACTCGCAGTTTTGAACT 59.400 47.619 0.00 0.00 44.06 3.01
411 412 1.657538 CGCAGACTCGCAGTTTTGAAC 60.658 52.381 0.00 0.00 0.00 3.18
412 413 0.581529 CGCAGACTCGCAGTTTTGAA 59.418 50.000 0.00 0.00 0.00 2.69
413 414 0.249280 TCGCAGACTCGCAGTTTTGA 60.249 50.000 0.00 0.00 0.00 2.69
414 415 2.225348 TCGCAGACTCGCAGTTTTG 58.775 52.632 0.00 0.00 0.00 2.44
415 416 4.750460 TCGCAGACTCGCAGTTTT 57.250 50.000 0.00 0.00 0.00 2.43
426 427 3.575630 GATCCATAATAAGCGTCGCAGA 58.424 45.455 21.09 6.78 0.00 4.26
427 428 2.342651 CGATCCATAATAAGCGTCGCAG 59.657 50.000 21.09 0.00 0.00 5.18
428 429 2.324860 CGATCCATAATAAGCGTCGCA 58.675 47.619 21.09 0.00 0.00 5.10
429 430 1.654105 CCGATCCATAATAAGCGTCGC 59.346 52.381 9.80 9.80 0.00 5.19
430 431 3.211803 TCCGATCCATAATAAGCGTCG 57.788 47.619 0.00 0.00 0.00 5.12
431 432 3.927142 CCTTCCGATCCATAATAAGCGTC 59.073 47.826 0.00 0.00 0.00 5.19
432 433 3.576982 TCCTTCCGATCCATAATAAGCGT 59.423 43.478 0.00 0.00 0.00 5.07
433 434 4.177026 CTCCTTCCGATCCATAATAAGCG 58.823 47.826 0.00 0.00 0.00 4.68
434 435 5.153950 ACTCCTTCCGATCCATAATAAGC 57.846 43.478 0.00 0.00 0.00 3.09
441 442 9.094578 CCATATAATATACTCCTTCCGATCCAT 57.905 37.037 0.00 0.00 0.00 3.41
442 443 7.015292 GCCATATAATATACTCCTTCCGATCCA 59.985 40.741 0.00 0.00 0.00 3.41
443 444 7.379750 GCCATATAATATACTCCTTCCGATCC 58.620 42.308 0.00 0.00 0.00 3.36
444 445 7.015292 TGGCCATATAATATACTCCTTCCGATC 59.985 40.741 0.00 0.00 0.00 3.69
445 446 6.844388 TGGCCATATAATATACTCCTTCCGAT 59.156 38.462 0.00 0.00 0.00 4.18
446 447 6.199376 TGGCCATATAATATACTCCTTCCGA 58.801 40.000 0.00 0.00 0.00 4.55
447 448 6.479972 TGGCCATATAATATACTCCTTCCG 57.520 41.667 0.00 0.00 0.00 4.30
448 449 8.088981 CGTATGGCCATATAATATACTCCTTCC 58.911 40.741 27.84 8.53 0.00 3.46
449 450 8.857098 TCGTATGGCCATATAATATACTCCTTC 58.143 37.037 27.84 9.14 0.00 3.46
450 451 8.777578 TCGTATGGCCATATAATATACTCCTT 57.222 34.615 27.84 0.00 0.00 3.36
451 452 8.777578 TTCGTATGGCCATATAATATACTCCT 57.222 34.615 27.84 0.00 0.00 3.69
452 453 9.826574 TTTTCGTATGGCCATATAATATACTCC 57.173 33.333 27.84 10.25 0.00 3.85
457 458 9.693739 TGGAATTTTCGTATGGCCATATAATAT 57.306 29.630 27.84 20.00 0.00 1.28
458 459 9.693739 ATGGAATTTTCGTATGGCCATATAATA 57.306 29.630 27.84 18.86 33.22 0.98
459 460 8.593945 ATGGAATTTTCGTATGGCCATATAAT 57.406 30.769 27.84 19.73 33.22 1.28
485 486 3.475932 ACCAGGCTTAGGTGTCTCA 57.524 52.632 0.00 0.00 38.13 3.27
501 502 6.435430 TCATGCATAGTCAAAACATACACC 57.565 37.500 0.00 0.00 0.00 4.16
589 590 1.951209 TCCATCTTGTAGGCCTCACA 58.049 50.000 9.68 9.91 0.00 3.58
602 603 4.471025 TCAATGTGGTCACTGTATCCATCT 59.529 41.667 6.44 0.00 33.68 2.90
611 612 8.948631 ATAAGTAACTATCAATGTGGTCACTG 57.051 34.615 2.66 0.00 0.00 3.66
613 614 9.811995 TGTATAAGTAACTATCAATGTGGTCAC 57.188 33.333 0.00 0.00 0.00 3.67
640 641 6.491394 CGTTTCAACCTTTGACAGTAAATCA 58.509 36.000 0.00 0.00 39.87 2.57
650 651 2.096248 ACAAGGCGTTTCAACCTTTGA 58.904 42.857 8.81 0.00 43.91 2.69
656 657 6.375377 TCAAATATACACAAGGCGTTTCAAC 58.625 36.000 0.00 0.00 0.00 3.18
663 664 8.988934 ACATATAGTTCAAATATACACAAGGCG 58.011 33.333 0.00 0.00 0.00 5.52
675 676 9.807649 GGCTTTTCAATCACATATAGTTCAAAT 57.192 29.630 0.00 0.00 0.00 2.32
716 718 9.770097 AGCTTGTCTACACGTATACTATACTAA 57.230 33.333 0.56 0.00 0.00 2.24
718 720 9.941325 ATAGCTTGTCTACACGTATACTATACT 57.059 33.333 0.00 0.00 0.00 2.12
722 724 9.416794 GTAGATAGCTTGTCTACACGTATACTA 57.583 37.037 23.56 0.00 44.67 1.82
723 725 8.149647 AGTAGATAGCTTGTCTACACGTATACT 58.850 37.037 27.19 12.79 46.65 2.12
724 726 8.309163 AGTAGATAGCTTGTCTACACGTATAC 57.691 38.462 27.19 11.32 46.65 1.47
725 727 8.531622 GAGTAGATAGCTTGTCTACACGTATA 57.468 38.462 27.19 2.27 46.65 1.47
726 728 7.424227 GAGTAGATAGCTTGTCTACACGTAT 57.576 40.000 27.19 14.75 46.65 3.06
851 857 1.774110 TTTCTGCAGTTGGAAAGCCA 58.226 45.000 14.67 0.00 44.17 4.75
877 883 3.641437 TTGCTTGTGTTATTCTGTGCC 57.359 42.857 0.00 0.00 0.00 5.01
884 890 7.054491 AGAGGTTCAATTTGCTTGTGTTATT 57.946 32.000 0.00 0.00 36.20 1.40
895 901 5.591877 CCATAGGAAGGAGAGGTTCAATTTG 59.408 44.000 0.00 0.00 0.00 2.32
1053 1059 6.723977 TGGCTAAGGAAATTACCACTGAATTT 59.276 34.615 0.00 0.00 38.81 1.82
1070 1076 4.500887 CCAATCAAAGATGCATGGCTAAGG 60.501 45.833 2.46 0.00 0.00 2.69
1072 1078 3.181473 GCCAATCAAAGATGCATGGCTAA 60.181 43.478 14.88 0.00 46.21 3.09
1074 1080 1.138266 GCCAATCAAAGATGCATGGCT 59.862 47.619 14.88 0.00 46.21 4.75
1075 1081 1.578583 GCCAATCAAAGATGCATGGC 58.421 50.000 2.46 5.82 44.84 4.40
1076 1082 2.971660 TGCCAATCAAAGATGCATGG 57.028 45.000 2.46 0.00 35.98 3.66
1119 1126 6.619437 TCATCTATTTTGGAATGGAGGGAGTA 59.381 38.462 0.00 0.00 36.39 2.59
1120 1127 5.433051 TCATCTATTTTGGAATGGAGGGAGT 59.567 40.000 0.00 0.00 36.39 3.85
1121 1128 5.945310 TCATCTATTTTGGAATGGAGGGAG 58.055 41.667 0.00 0.00 36.39 4.30
1122 1129 5.433051 ACTCATCTATTTTGGAATGGAGGGA 59.567 40.000 0.00 0.00 36.39 4.20
1123 1130 5.699143 ACTCATCTATTTTGGAATGGAGGG 58.301 41.667 0.00 0.00 36.39 4.30
1124 1131 6.359804 TGACTCATCTATTTTGGAATGGAGG 58.640 40.000 0.00 0.00 36.39 4.30
1125 1132 8.097078 GATGACTCATCTATTTTGGAATGGAG 57.903 38.462 11.27 0.00 36.39 3.86
1140 1147 6.049149 TCCGTTCCAAAATAGATGACTCATC 58.951 40.000 10.65 10.65 40.80 2.92
1141 1148 5.989477 TCCGTTCCAAAATAGATGACTCAT 58.011 37.500 0.00 0.00 0.00 2.90
1142 1149 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1143 1150 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1144 1151 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1145 1152 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1146 1153 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1147 1154 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1148 1155 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1149 1156 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1150 1157 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1151 1158 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
1152 1159 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
1153 1160 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
1154 1161 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1155 1162 2.905415 TAGTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
1156 1163 2.905415 TTAGTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
1157 1164 4.750021 AAATTAGTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
1158 1165 7.983484 TGAATTAAATTAGTACTCCCTCCGTTC 59.017 37.037 0.00 0.00 0.00 3.95
1159 1166 7.854337 TGAATTAAATTAGTACTCCCTCCGTT 58.146 34.615 0.00 0.00 0.00 4.44
1160 1167 7.343833 TCTGAATTAAATTAGTACTCCCTCCGT 59.656 37.037 0.00 0.00 0.00 4.69
1161 1168 7.723324 TCTGAATTAAATTAGTACTCCCTCCG 58.277 38.462 0.00 0.00 0.00 4.63
1162 1169 9.327628 GTTCTGAATTAAATTAGTACTCCCTCC 57.672 37.037 0.00 0.00 0.00 4.30
1163 1170 9.886132 TGTTCTGAATTAAATTAGTACTCCCTC 57.114 33.333 0.00 0.00 0.00 4.30
1166 1173 9.989869 GCTTGTTCTGAATTAAATTAGTACTCC 57.010 33.333 0.00 0.00 0.00 3.85
1244 1251 5.529581 ACCTTATGTTGTCCCTTGTTTTG 57.470 39.130 0.00 0.00 0.00 2.44
1359 1366 4.151689 CCGTCATACTTGAAATCAACACGT 59.848 41.667 0.00 0.00 32.48 4.49
1577 1584 2.702478 CCCATCTCAGCAGTGATTAGGA 59.298 50.000 0.00 0.00 30.18 2.94
1695 1702 5.384063 AGAGAGCATTATCTATGACACCG 57.616 43.478 0.00 0.00 36.26 4.94
1839 1846 0.462047 CCACCCAGCCAACTATCGTC 60.462 60.000 0.00 0.00 0.00 4.20
1914 1921 5.241506 TCTTGAAGGTTCAATGTGTGGAATC 59.758 40.000 5.63 0.00 45.26 2.52
1923 1930 6.088016 TCAAACCATCTTGAAGGTTCAATG 57.912 37.500 10.18 6.27 46.92 2.82
2193 2200 3.552890 GCAACCAGAAACCACCAAGAATC 60.553 47.826 0.00 0.00 0.00 2.52
2361 2368 0.179062 AGAACAGGATGCCGATCAGC 60.179 55.000 0.00 0.00 42.53 4.26
2566 2573 0.760945 ATCAGGATGGTCGGAGGGAC 60.761 60.000 0.00 0.00 45.31 4.46
2577 2584 0.455815 TCACCACGACGATCAGGATG 59.544 55.000 0.00 0.39 37.54 3.51
2600 2607 1.302832 ACCTTGAAGGAAGCCAGCG 60.303 57.895 19.83 0.00 37.67 5.18
2758 2765 4.743018 GGGGGTGGTGTCATCTTG 57.257 61.111 0.00 0.00 0.00 3.02
2778 2785 4.880886 TTGCATCATAAATCAGACCACG 57.119 40.909 0.00 0.00 0.00 4.94
2829 2848 3.293337 ACAGCACATATGATGCCACATT 58.707 40.909 19.89 5.41 46.57 2.71
2844 2863 3.408634 ACACCTTGGTATACAACAGCAC 58.591 45.455 5.01 0.00 34.76 4.40
2861 2880 4.821805 TCCTTTCTTTCTGATGACAACACC 59.178 41.667 0.00 0.00 0.00 4.16
2876 2895 9.558396 CTCAGCATAATCTTCTATTCCTTTCTT 57.442 33.333 0.00 0.00 0.00 2.52
2877 2896 7.661027 GCTCAGCATAATCTTCTATTCCTTTCT 59.339 37.037 0.00 0.00 0.00 2.52
2878 2897 7.359933 CGCTCAGCATAATCTTCTATTCCTTTC 60.360 40.741 0.00 0.00 0.00 2.62
2922 2996 0.102481 ATCCGACGTCTACCATGTGC 59.898 55.000 14.70 0.00 0.00 4.57
2923 2997 2.579207 AATCCGACGTCTACCATGTG 57.421 50.000 14.70 0.00 0.00 3.21
2951 3025 0.471591 ATTTGGGCTGCCAAACCTCA 60.472 50.000 22.05 4.88 41.56 3.86
3001 3139 3.861840 ACACGGATCAATCTACCACTTG 58.138 45.455 0.00 0.00 0.00 3.16
3028 3166 2.312390 TCCCACAGTTAAAAAGGGCAC 58.688 47.619 0.00 0.00 39.42 5.01
3029 3167 2.757894 TCCCACAGTTAAAAAGGGCA 57.242 45.000 0.00 0.00 39.42 5.36
3030 3168 5.731957 TTAATCCCACAGTTAAAAAGGGC 57.268 39.130 0.00 0.00 39.42 5.19
3042 4734 5.240623 CGGCTATATTTGCTTTAATCCCACA 59.759 40.000 0.00 0.00 0.00 4.17
3129 4821 4.277239 GGCGGCAACCCATTTTTC 57.723 55.556 3.07 0.00 0.00 2.29
3228 4932 1.069765 AACGGTGAGAGTGGCTGTG 59.930 57.895 0.00 0.00 0.00 3.66
3235 4939 0.249489 GCTGTGACAACGGTGAGAGT 60.249 55.000 7.88 0.00 34.90 3.24
3239 4943 1.520192 ACAGCTGTGACAACGGTGA 59.480 52.632 20.97 0.00 34.90 4.02
3250 4954 4.385405 GGCGAGGCTCACAGCTGT 62.385 66.667 15.25 15.25 41.99 4.40
3299 5084 1.367840 GACAACGGTGAGAGTGGCT 59.632 57.895 7.88 0.00 0.00 4.75
3300 5085 1.069090 TGACAACGGTGAGAGTGGC 59.931 57.895 7.88 0.00 0.00 5.01
3301 5086 0.104120 TGTGACAACGGTGAGAGTGG 59.896 55.000 7.88 0.00 0.00 4.00
3302 5087 1.491670 CTGTGACAACGGTGAGAGTG 58.508 55.000 7.88 0.00 0.00 3.51
3303 5088 0.249489 GCTGTGACAACGGTGAGAGT 60.249 55.000 7.88 0.00 34.90 3.24
3304 5089 0.032678 AGCTGTGACAACGGTGAGAG 59.967 55.000 7.88 0.00 34.90 3.20
3305 5090 0.249447 CAGCTGTGACAACGGTGAGA 60.249 55.000 7.88 0.00 34.90 3.27
3306 5091 0.530650 ACAGCTGTGACAACGGTGAG 60.531 55.000 20.97 0.00 34.90 3.51
3307 5092 1.520192 ACAGCTGTGACAACGGTGA 59.480 52.632 20.97 0.00 34.90 4.02
3308 5093 4.124910 ACAGCTGTGACAACGGTG 57.875 55.556 20.97 0.00 34.90 4.94
3334 5119 3.669036 CTGTGACGACGAGCTCCGG 62.669 68.421 15.39 0.00 43.93 5.14
3367 5209 1.308998 CCAGGTGAAAAGTTGCGACT 58.691 50.000 0.00 0.00 37.87 4.18
3501 5343 1.000955 GGATATGCACACCGTCCTAGG 59.999 57.143 0.82 0.82 37.30 3.02
3524 5385 2.004583 TGTTCATCGGTCGGTTCATC 57.995 50.000 0.00 0.00 0.00 2.92
3539 5400 7.648142 TGATTTTACTGTTGACTGGATTGTTC 58.352 34.615 0.00 0.00 0.00 3.18
3563 5424 5.526479 CAGTGATTATTGACAGGATGGTCTG 59.474 44.000 0.00 0.00 43.62 3.51
3564 5425 5.397221 CCAGTGATTATTGACAGGATGGTCT 60.397 44.000 0.00 0.00 43.62 3.85
3565 5426 4.818546 CCAGTGATTATTGACAGGATGGTC 59.181 45.833 0.00 0.00 43.62 4.02
3566 5427 4.474651 TCCAGTGATTATTGACAGGATGGT 59.525 41.667 0.00 0.00 43.62 3.55
3567 5428 4.818546 GTCCAGTGATTATTGACAGGATGG 59.181 45.833 0.00 0.00 43.62 3.51
3593 5454 2.202974 GGGGTACGTTCATCGGGC 60.203 66.667 0.00 0.00 44.69 6.13
3606 5467 2.285818 TGGGGAATACAGCGGGGT 60.286 61.111 0.00 0.00 0.00 4.95
3614 5475 4.911514 ATGCGTTATTTGTGGGGAATAC 57.088 40.909 0.00 0.00 0.00 1.89
3670 5531 9.482627 CTCGATTTCTAGGCATCTTAAACTAAT 57.517 33.333 0.00 0.00 0.00 1.73
3671 5532 7.438459 GCTCGATTTCTAGGCATCTTAAACTAA 59.562 37.037 0.00 0.00 0.00 2.24
3672 5533 6.924060 GCTCGATTTCTAGGCATCTTAAACTA 59.076 38.462 0.00 0.00 0.00 2.24
3673 5534 5.755861 GCTCGATTTCTAGGCATCTTAAACT 59.244 40.000 0.00 0.00 0.00 2.66
3675 5536 5.057149 GGCTCGATTTCTAGGCATCTTAAA 58.943 41.667 1.44 0.00 38.14 1.52
3676 5537 4.632153 GGCTCGATTTCTAGGCATCTTAA 58.368 43.478 1.44 0.00 38.14 1.85
3677 5538 3.305403 CGGCTCGATTTCTAGGCATCTTA 60.305 47.826 6.49 0.00 38.13 2.10
3679 5540 1.000283 CGGCTCGATTTCTAGGCATCT 60.000 52.381 6.49 0.00 38.13 2.90
3680 5541 1.000163 TCGGCTCGATTTCTAGGCATC 60.000 52.381 6.49 0.00 38.13 3.91
3682 5543 0.821517 TTCGGCTCGATTTCTAGGCA 59.178 50.000 6.49 0.00 38.13 4.75
3683 5544 1.209998 GTTCGGCTCGATTTCTAGGC 58.790 55.000 0.00 0.00 35.23 3.93
3684 5545 1.136305 TGGTTCGGCTCGATTTCTAGG 59.864 52.381 0.00 0.00 35.23 3.02
3685 5546 2.194271 GTGGTTCGGCTCGATTTCTAG 58.806 52.381 0.00 0.00 35.23 2.43
3686 5547 1.546923 TGTGGTTCGGCTCGATTTCTA 59.453 47.619 0.00 0.00 35.23 2.10
3687 5548 0.320374 TGTGGTTCGGCTCGATTTCT 59.680 50.000 0.00 0.00 35.23 2.52
3689 5550 0.872388 GTTGTGGTTCGGCTCGATTT 59.128 50.000 0.00 0.00 35.23 2.17
3690 5551 0.953960 GGTTGTGGTTCGGCTCGATT 60.954 55.000 0.00 0.00 35.23 3.34
3691 5552 1.375523 GGTTGTGGTTCGGCTCGAT 60.376 57.895 0.00 0.00 35.23 3.59
3716 9323 7.543172 TGTGCTTACCTTAATTAGTTGTACTCG 59.457 37.037 0.00 0.00 0.00 4.18
3720 9327 9.953565 AGATTGTGCTTACCTTAATTAGTTGTA 57.046 29.630 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.