Multiple sequence alignment - TraesCS5B01G019400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G019400 chr5B 100.000 2010 0 0 2197 4206 18777043 18779052 0.000000e+00 3712.0
1 TraesCS5B01G019400 chr5B 100.000 1845 0 0 1 1845 18774847 18776691 0.000000e+00 3408.0
2 TraesCS5B01G019400 chr5B 81.425 716 80 27 999 1680 18664646 18665342 1.720000e-148 536.0
3 TraesCS5B01G019400 chr5B 87.805 123 15 0 2877 2999 18589715 18589837 1.220000e-30 145.0
4 TraesCS5B01G019400 chr5A 91.063 1712 124 17 2499 4206 18570500 18568814 0.000000e+00 2287.0
5 TraesCS5B01G019400 chr5A 93.686 681 36 3 1003 1682 18572642 18571968 0.000000e+00 1013.0
6 TraesCS5B01G019400 chr5A 82.496 697 89 18 999 1675 18576099 18576782 7.840000e-162 580.0
7 TraesCS5B01G019400 chr5A 80.993 705 95 18 999 1680 18395007 18395695 1.340000e-144 523.0
8 TraesCS5B01G019400 chr5A 92.832 279 20 0 3528 3806 18538376 18538098 5.060000e-109 405.0
9 TraesCS5B01G019400 chr5A 84.010 394 48 8 277 660 625910942 625911330 8.590000e-97 364.0
10 TraesCS5B01G019400 chr5A 94.488 127 6 1 3961 4087 112327185 112327060 1.190000e-45 195.0
11 TraesCS5B01G019400 chr5A 92.913 127 7 2 3961 4087 238877774 238877898 2.580000e-42 183.0
12 TraesCS5B01G019400 chr5A 76.606 218 23 13 726 940 18572958 18572766 1.240000e-15 95.3
13 TraesCS5B01G019400 chr5A 80.374 107 16 5 2508 2612 18395803 18395906 4.510000e-10 76.8
14 TraesCS5B01G019400 chr5D 94.381 1406 67 8 2197 3599 26681153 26679757 0.000000e+00 2148.0
15 TraesCS5B01G019400 chr5D 90.749 681 29 3 1003 1682 26682527 26681880 0.000000e+00 878.0
16 TraesCS5B01G019400 chr5D 93.238 488 30 3 3720 4206 26679750 26679265 0.000000e+00 715.0
17 TraesCS5B01G019400 chr5D 83.381 698 81 19 999 1675 26785270 26785953 7.730000e-172 614.0
18 TraesCS5B01G019400 chr5D 82.302 695 86 18 1011 1684 26507944 26507266 6.100000e-158 568.0
19 TraesCS5B01G019400 chr5D 81.792 703 84 24 1003 1683 26523328 26522648 2.210000e-152 549.0
20 TraesCS5B01G019400 chr5D 82.965 452 63 10 1236 1683 26474492 26474051 3.050000e-106 396.0
21 TraesCS5B01G019400 chr5D 97.778 180 4 0 1602 1781 26681700 26681521 1.140000e-80 311.0
22 TraesCS5B01G019400 chr5D 94.040 151 3 2 726 876 26682871 26682727 1.520000e-54 224.0
23 TraesCS5B01G019400 chr5D 85.600 125 9 7 878 998 26682691 26682572 5.710000e-24 122.0
24 TraesCS5B01G019400 chr5D 97.297 37 1 0 639 675 438186664 438186628 3.510000e-06 63.9
25 TraesCS5B01G019400 chr3D 86.873 678 59 15 3 667 148399323 148399983 0.000000e+00 732.0
26 TraesCS5B01G019400 chr3D 87.912 637 46 12 44 669 597864958 597864342 0.000000e+00 721.0
27 TraesCS5B01G019400 chr3D 88.442 199 17 5 3777 3973 501924530 501924724 7.030000e-58 235.0
28 TraesCS5B01G019400 chr3D 87.940 199 18 5 3777 3973 193423523 193423329 3.270000e-56 230.0
29 TraesCS5B01G019400 chr3D 94.488 127 6 1 3961 4087 523748167 523748042 1.190000e-45 195.0
30 TraesCS5B01G019400 chr3D 93.701 127 7 1 3961 4087 501842967 501843092 5.550000e-44 189.0
31 TraesCS5B01G019400 chr4D 87.697 634 53 7 44 668 213897833 213898450 0.000000e+00 715.0
32 TraesCS5B01G019400 chr4D 79.310 174 22 4 2259 2431 481792212 481792052 4.450000e-20 110.0
33 TraesCS5B01G019400 chr7B 86.610 590 61 5 47 627 60345517 60344937 1.650000e-178 636.0
34 TraesCS5B01G019400 chr2B 84.699 647 58 16 47 675 141537828 141537205 3.600000e-170 608.0
35 TraesCS5B01G019400 chr2B 83.797 395 48 11 277 660 105809090 105809479 1.110000e-95 361.0
36 TraesCS5B01G019400 chr2B 80.952 189 33 3 2245 2430 787775110 787775298 3.390000e-31 147.0
37 TraesCS5B01G019400 chr1B 82.975 605 63 26 1 588 664980797 664980216 1.040000e-140 510.0
38 TraesCS5B01G019400 chr1B 83.495 206 30 3 2230 2433 550268183 550268386 5.550000e-44 189.0
39 TraesCS5B01G019400 chr1B 86.667 120 15 1 2258 2377 676178522 676178640 9.490000e-27 132.0
40 TraesCS5B01G019400 chr2D 82.126 621 63 21 56 660 575352397 575352985 4.890000e-134 488.0
41 TraesCS5B01G019400 chr2D 82.184 174 29 1 2258 2429 69916529 69916702 9.420000e-32 148.0
42 TraesCS5B01G019400 chr4B 80.253 633 68 26 56 675 599605099 599605687 1.400000e-114 424.0
43 TraesCS5B01G019400 chr4B 79.195 149 29 2 2259 2406 149717009 149716862 7.440000e-18 102.0
44 TraesCS5B01G019400 chr4B 100.000 28 0 0 3496 3523 594881674 594881701 8.000000e-03 52.8
45 TraesCS5B01G019400 chr1D 84.559 408 50 6 277 674 9333155 9333559 3.940000e-105 392.0
46 TraesCS5B01G019400 chr1D 84.066 182 27 1 2238 2417 360463691 360463510 1.550000e-39 174.0
47 TraesCS5B01G019400 chr6D 84.185 411 49 6 277 675 337846105 337846511 6.600000e-103 385.0
48 TraesCS5B01G019400 chr6D 93.600 125 7 1 3963 4087 153952045 153952168 7.180000e-43 185.0
49 TraesCS5B01G019400 chr6D 77.457 173 26 5 2259 2431 457479958 457479799 1.610000e-14 91.6
50 TraesCS5B01G019400 chr6B 88.442 199 17 5 3777 3973 306986704 306986898 7.030000e-58 235.0
51 TraesCS5B01G019400 chr7A 87.940 199 18 5 3777 3973 46387662 46387856 3.270000e-56 230.0
52 TraesCS5B01G019400 chr7A 87.940 199 18 5 3777 3973 575297764 575297570 3.270000e-56 230.0
53 TraesCS5B01G019400 chr7A 92.913 127 7 2 3961 4087 563526738 563526862 2.580000e-42 183.0
54 TraesCS5B01G019400 chr7A 85.124 121 17 1 2257 2377 721664539 721664420 5.710000e-24 122.0
55 TraesCS5B01G019400 chr7A 100.000 29 0 0 3318 3346 556164714 556164742 2.000000e-03 54.7
56 TraesCS5B01G019400 chrUn 87.437 199 19 5 3777 3973 402224951 402224757 1.520000e-54 224.0
57 TraesCS5B01G019400 chrUn 87.437 199 19 5 3777 3973 413328119 413328313 1.520000e-54 224.0
58 TraesCS5B01G019400 chr1A 94.488 127 6 1 3961 4087 278514550 278514425 1.190000e-45 195.0
59 TraesCS5B01G019400 chr4A 90.625 64 6 0 3496 3559 679313172 679313235 7.490000e-13 86.1
60 TraesCS5B01G019400 chr3B 77.869 122 15 8 551 667 781561522 781561636 9.760000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G019400 chr5B 18774847 18779052 4205 False 3560.000000 3712 100.000000 1 4206 2 chr5B.!!$F3 4205
1 TraesCS5B01G019400 chr5B 18664646 18665342 696 False 536.000000 536 81.425000 999 1680 1 chr5B.!!$F2 681
2 TraesCS5B01G019400 chr5A 18568814 18572958 4144 True 1131.766667 2287 87.118333 726 4206 3 chr5A.!!$R3 3480
3 TraesCS5B01G019400 chr5A 18576099 18576782 683 False 580.000000 580 82.496000 999 1675 1 chr5A.!!$F1 676
4 TraesCS5B01G019400 chr5A 18395007 18395906 899 False 299.900000 523 80.683500 999 2612 2 chr5A.!!$F4 1613
5 TraesCS5B01G019400 chr5D 26679265 26682871 3606 True 733.000000 2148 92.631000 726 4206 6 chr5D.!!$R5 3480
6 TraesCS5B01G019400 chr5D 26785270 26785953 683 False 614.000000 614 83.381000 999 1675 1 chr5D.!!$F1 676
7 TraesCS5B01G019400 chr5D 26507266 26507944 678 True 568.000000 568 82.302000 1011 1684 1 chr5D.!!$R2 673
8 TraesCS5B01G019400 chr5D 26522648 26523328 680 True 549.000000 549 81.792000 1003 1683 1 chr5D.!!$R3 680
9 TraesCS5B01G019400 chr3D 148399323 148399983 660 False 732.000000 732 86.873000 3 667 1 chr3D.!!$F1 664
10 TraesCS5B01G019400 chr3D 597864342 597864958 616 True 721.000000 721 87.912000 44 669 1 chr3D.!!$R3 625
11 TraesCS5B01G019400 chr4D 213897833 213898450 617 False 715.000000 715 87.697000 44 668 1 chr4D.!!$F1 624
12 TraesCS5B01G019400 chr7B 60344937 60345517 580 True 636.000000 636 86.610000 47 627 1 chr7B.!!$R1 580
13 TraesCS5B01G019400 chr2B 141537205 141537828 623 True 608.000000 608 84.699000 47 675 1 chr2B.!!$R1 628
14 TraesCS5B01G019400 chr1B 664980216 664980797 581 True 510.000000 510 82.975000 1 588 1 chr1B.!!$R1 587
15 TraesCS5B01G019400 chr2D 575352397 575352985 588 False 488.000000 488 82.126000 56 660 1 chr2D.!!$F2 604
16 TraesCS5B01G019400 chr4B 599605099 599605687 588 False 424.000000 424 80.253000 56 675 1 chr4B.!!$F2 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 870 0.312416 CCGATGGATCACTCTCCGAC 59.688 60.0 0.0 0.0 38.21 4.79 F
1340 1529 0.108138 CGAGTTGAGGTCCATCCACC 60.108 60.0 0.0 0.0 39.02 4.61 F
1492 1684 1.620822 GCAAAGGGAAGAAGAAGCCA 58.379 50.0 0.0 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1676 1876 0.685097 GCTATCTTGGCCCGGATACA 59.315 55.0 0.73 0.0 0.0 2.29 R
2249 2788 0.960364 GGAGATGCAAAACCAGCCGA 60.960 55.0 0.00 0.0 0.0 5.54 R
3312 4496 1.568504 TGGAGATGCTCTAACCCGTT 58.431 50.0 0.00 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
275 288 3.619483 TGTAATGGCAAATAGTTCGGTCG 59.381 43.478 0.00 0.00 0.00 4.79
312 328 6.710692 ATTTTTCTGCTATTTTCCAAAGCG 57.289 33.333 0.00 0.00 39.14 4.68
354 370 5.329035 TGAGCAAAATCTGGGCTTTTATC 57.671 39.130 0.00 0.00 38.15 1.75
381 397 7.064490 TGTCAAAGAAAGAAAACAAAATCTGGC 59.936 33.333 0.00 0.00 0.00 4.85
395 411 6.710295 ACAAAATCTGGCCCTTTTCATTTAAC 59.290 34.615 0.00 0.00 0.00 2.01
398 414 4.998051 TCTGGCCCTTTTCATTTAACTCT 58.002 39.130 0.00 0.00 0.00 3.24
402 418 4.690748 GGCCCTTTTCATTTAACTCTTTGC 59.309 41.667 0.00 0.00 0.00 3.68
446 467 0.895559 CACAGGGAAAAGGGCCTCAC 60.896 60.000 6.46 0.00 0.00 3.51
454 475 3.628646 AAGGGCCTCACGTGATGGC 62.629 63.158 33.13 33.13 45.42 4.40
528 563 1.534163 CTGAACGAGTCGTGTGGTAGA 59.466 52.381 20.68 0.00 39.99 2.59
550 585 2.842462 TCCTCCTGCCACACGTGT 60.842 61.111 17.22 17.22 0.00 4.49
551 586 2.666190 CCTCCTGCCACACGTGTG 60.666 66.667 36.13 36.13 45.23 3.82
662 700 1.070134 ACACGTGTGGCAGTTATCAGT 59.930 47.619 22.71 0.00 34.19 3.41
675 713 7.552687 TGGCAGTTATCAGTGTCCTATTTTTAG 59.447 37.037 0.00 0.00 0.00 1.85
676 714 7.553044 GGCAGTTATCAGTGTCCTATTTTTAGT 59.447 37.037 0.00 0.00 0.00 2.24
677 715 8.604890 GCAGTTATCAGTGTCCTATTTTTAGTC 58.395 37.037 0.00 0.00 0.00 2.59
678 716 9.653287 CAGTTATCAGTGTCCTATTTTTAGTCA 57.347 33.333 0.00 0.00 0.00 3.41
679 717 9.877178 AGTTATCAGTGTCCTATTTTTAGTCAG 57.123 33.333 0.00 0.00 0.00 3.51
680 718 9.871238 GTTATCAGTGTCCTATTTTTAGTCAGA 57.129 33.333 0.00 0.00 0.00 3.27
681 719 9.871238 TTATCAGTGTCCTATTTTTAGTCAGAC 57.129 33.333 0.00 0.00 0.00 3.51
682 720 6.387465 TCAGTGTCCTATTTTTAGTCAGACG 58.613 40.000 0.00 0.00 0.00 4.18
683 721 5.577164 CAGTGTCCTATTTTTAGTCAGACGG 59.423 44.000 0.00 0.00 0.00 4.79
684 722 5.245526 AGTGTCCTATTTTTAGTCAGACGGT 59.754 40.000 0.00 0.00 0.00 4.83
685 723 5.930569 GTGTCCTATTTTTAGTCAGACGGTT 59.069 40.000 0.00 0.00 0.00 4.44
686 724 7.039504 AGTGTCCTATTTTTAGTCAGACGGTTA 60.040 37.037 0.00 0.00 0.00 2.85
687 725 7.763071 GTGTCCTATTTTTAGTCAGACGGTTAT 59.237 37.037 0.00 0.00 0.00 1.89
688 726 8.970020 TGTCCTATTTTTAGTCAGACGGTTATA 58.030 33.333 0.00 0.00 0.00 0.98
689 727 9.807649 GTCCTATTTTTAGTCAGACGGTTATAA 57.192 33.333 0.00 0.00 0.00 0.98
699 737 8.064336 AGTCAGACGGTTATAAAGTTAGATGT 57.936 34.615 0.00 0.00 0.00 3.06
700 738 7.974501 AGTCAGACGGTTATAAAGTTAGATGTG 59.025 37.037 0.00 0.00 0.00 3.21
701 739 7.972277 GTCAGACGGTTATAAAGTTAGATGTGA 59.028 37.037 0.00 0.00 0.00 3.58
702 740 8.188799 TCAGACGGTTATAAAGTTAGATGTGAG 58.811 37.037 0.00 0.00 0.00 3.51
703 741 8.188799 CAGACGGTTATAAAGTTAGATGTGAGA 58.811 37.037 0.00 0.00 0.00 3.27
704 742 8.915036 AGACGGTTATAAAGTTAGATGTGAGAT 58.085 33.333 0.00 0.00 0.00 2.75
705 743 9.182933 GACGGTTATAAAGTTAGATGTGAGATC 57.817 37.037 0.00 0.00 0.00 2.75
706 744 8.915036 ACGGTTATAAAGTTAGATGTGAGATCT 58.085 33.333 0.00 0.00 0.00 2.75
714 752 7.888250 AGTTAGATGTGAGATCTATGTGACA 57.112 36.000 0.00 0.00 31.45 3.58
715 753 8.476064 AGTTAGATGTGAGATCTATGTGACAT 57.524 34.615 2.65 2.65 31.45 3.06
716 754 9.579932 AGTTAGATGTGAGATCTATGTGACATA 57.420 33.333 5.05 5.05 31.45 2.29
719 757 8.242729 AGATGTGAGATCTATGTGACATAACA 57.757 34.615 6.75 7.28 0.00 2.41
720 758 8.699130 AGATGTGAGATCTATGTGACATAACAA 58.301 33.333 6.75 0.00 32.81 2.83
721 759 9.317936 GATGTGAGATCTATGTGACATAACAAA 57.682 33.333 6.75 0.00 32.81 2.83
722 760 9.842775 ATGTGAGATCTATGTGACATAACAAAT 57.157 29.630 6.75 0.00 32.81 2.32
723 761 9.317936 TGTGAGATCTATGTGACATAACAAATC 57.682 33.333 6.75 7.52 32.81 2.17
724 762 9.539825 GTGAGATCTATGTGACATAACAAATCT 57.460 33.333 6.75 11.45 32.81 2.40
781 819 2.732597 CGGAAGACGTAGAGCAAAGAGG 60.733 54.545 0.00 0.00 37.93 3.69
830 868 1.662608 CCCGATGGATCACTCTCCG 59.337 63.158 0.00 0.00 38.21 4.63
831 869 0.823769 CCCGATGGATCACTCTCCGA 60.824 60.000 0.00 0.00 38.21 4.55
832 870 0.312416 CCGATGGATCACTCTCCGAC 59.688 60.000 0.00 0.00 38.21 4.79
833 871 1.313772 CGATGGATCACTCTCCGACT 58.686 55.000 0.00 0.00 38.21 4.18
834 872 1.265635 CGATGGATCACTCTCCGACTC 59.734 57.143 0.00 0.00 38.21 3.36
835 873 1.611491 GATGGATCACTCTCCGACTCC 59.389 57.143 0.00 0.00 38.21 3.85
836 874 0.748367 TGGATCACTCTCCGACTCCG 60.748 60.000 0.00 0.00 38.21 4.63
841 879 0.945813 CACTCTCCGACTCCGATACC 59.054 60.000 0.00 0.00 38.22 2.73
876 914 3.231818 CCAGTATCATTACTCCGACCCT 58.768 50.000 0.00 0.00 36.50 4.34
931 1003 4.863689 GTGAGCGATCCTCTCAATCATATG 59.136 45.833 12.34 0.00 41.66 1.78
936 1008 4.626172 CGATCCTCTCAATCATATGCAGTG 59.374 45.833 0.00 0.00 0.00 3.66
940 1012 3.995048 CTCTCAATCATATGCAGTGCGAT 59.005 43.478 11.20 7.86 0.00 4.58
941 1013 3.992427 TCTCAATCATATGCAGTGCGATC 59.008 43.478 11.20 0.00 0.00 3.69
942 1014 2.733026 TCAATCATATGCAGTGCGATCG 59.267 45.455 11.69 11.69 0.00 3.69
943 1015 2.730550 ATCATATGCAGTGCGATCGA 57.269 45.000 21.57 5.11 0.00 3.59
944 1016 2.056094 TCATATGCAGTGCGATCGAG 57.944 50.000 21.57 6.11 0.00 4.04
957 1044 2.344741 GCGATCGAGTAGTTCCAAACAC 59.655 50.000 21.57 0.00 0.00 3.32
958 1045 2.592897 CGATCGAGTAGTTCCAAACACG 59.407 50.000 10.26 0.00 0.00 4.49
959 1046 3.668757 CGATCGAGTAGTTCCAAACACGA 60.669 47.826 10.26 0.00 33.02 4.35
960 1047 3.928727 TCGAGTAGTTCCAAACACGAT 57.071 42.857 0.00 0.00 0.00 3.73
967 1054 1.136336 GTTCCAAACACGATCGACAGC 60.136 52.381 24.34 0.00 0.00 4.40
998 1095 4.277672 CCCTACTCGATCGATAGTCCAAAA 59.722 45.833 19.78 0.00 37.40 2.44
999 1096 5.213675 CCTACTCGATCGATAGTCCAAAAC 58.786 45.833 19.78 0.00 37.40 2.43
1000 1097 4.043037 ACTCGATCGATAGTCCAAAACC 57.957 45.455 19.78 0.00 37.40 3.27
1001 1098 3.043586 CTCGATCGATAGTCCAAAACCG 58.956 50.000 19.78 0.00 37.40 4.44
1132 1288 1.375098 CTCTACTCCGTCGTCCACCC 61.375 65.000 0.00 0.00 0.00 4.61
1189 1372 3.319198 GACCCTCGGAAGGCCACA 61.319 66.667 5.01 0.00 41.85 4.17
1329 1518 1.209275 CTATTCGCCGCCGAGTTGAG 61.209 60.000 0.00 0.00 45.35 3.02
1340 1529 0.108138 CGAGTTGAGGTCCATCCACC 60.108 60.000 0.00 0.00 39.02 4.61
1492 1684 1.620822 GCAAAGGGAAGAAGAAGCCA 58.379 50.000 0.00 0.00 0.00 4.75
1532 1732 4.864334 GGCACCTCCATGGGCTCG 62.864 72.222 13.02 0.00 41.11 5.03
1639 1839 2.297597 ACTGCTCGACTGCTTTAAGACT 59.702 45.455 0.00 0.00 0.00 3.24
1676 1876 3.610040 TCGTTCTTGCACATGAGGTAT 57.390 42.857 0.00 0.00 0.00 2.73
1761 2222 3.258372 TGAAGTCTGTCGCTGGTTATCTT 59.742 43.478 0.00 0.00 0.00 2.40
1789 2287 3.467803 GCCTCAGTTGCCGTATCTTATT 58.532 45.455 0.00 0.00 0.00 1.40
1791 2289 4.024809 GCCTCAGTTGCCGTATCTTATTTC 60.025 45.833 0.00 0.00 0.00 2.17
1792 2290 4.209288 CCTCAGTTGCCGTATCTTATTTCG 59.791 45.833 0.00 0.00 0.00 3.46
1795 2293 5.290158 TCAGTTGCCGTATCTTATTTCGTTC 59.710 40.000 0.00 0.00 0.00 3.95
1796 2294 4.569564 AGTTGCCGTATCTTATTTCGTTCC 59.430 41.667 0.00 0.00 0.00 3.62
2221 2760 1.767388 CGAGTCGCGATAATTCGGC 59.233 57.895 14.06 0.00 45.59 5.54
2241 2780 4.389576 CAACCGAACAGCAGCCGC 62.390 66.667 0.00 0.00 38.99 6.53
2276 2815 4.211125 TGGTTTTGCATCTCCAGTTTACA 58.789 39.130 0.00 0.00 0.00 2.41
2280 2819 6.350445 GGTTTTGCATCTCCAGTTTACATCAT 60.350 38.462 0.00 0.00 0.00 2.45
2307 2846 5.689383 TGGAGTTGCACTTTTACATCTTC 57.311 39.130 0.00 0.00 0.00 2.87
2317 2856 6.074356 GCACTTTTACATCTTCGTTTTGCATT 60.074 34.615 0.00 0.00 0.00 3.56
2326 2865 8.131100 ACATCTTCGTTTTGCATTATCTATTGG 58.869 33.333 0.00 0.00 0.00 3.16
2404 2943 7.690256 ACAACACCTACTTAGATCTCCAAATT 58.310 34.615 0.00 0.00 0.00 1.82
2444 2983 9.732130 GGAGATGCTCTTAATTATGGAGTATTT 57.268 33.333 15.25 11.93 33.80 1.40
2487 3026 4.320714 CCAACCTGATGAGATGTTGTTGTG 60.321 45.833 0.00 0.00 37.08 3.33
2641 3822 1.576421 GAGCCCTTTTCACAGCACG 59.424 57.895 0.00 0.00 0.00 5.34
2651 3832 3.811722 TTCACAGCACGATGATTGTTC 57.188 42.857 0.00 0.00 0.00 3.18
2658 3839 4.093850 CAGCACGATGATTGTTCATTCTCA 59.906 41.667 0.00 0.00 42.73 3.27
2716 3897 8.200792 TCTGTTAATCAATTAGAAGCTCTCCTC 58.799 37.037 0.00 0.00 0.00 3.71
2842 4023 1.086696 GAAGCGAGCTACAATTGCCA 58.913 50.000 5.05 0.00 0.00 4.92
2845 4026 1.086696 GCGAGCTACAATTGCCAGAA 58.913 50.000 5.05 0.00 0.00 3.02
3012 4193 0.406361 TTTCCGGTAACCCTGGCATT 59.594 50.000 0.00 0.00 0.00 3.56
3140 4321 7.928307 TGGAATTTGAGTATGAGAAAGGAAG 57.072 36.000 0.00 0.00 0.00 3.46
3142 4323 6.601217 GGAATTTGAGTATGAGAAAGGAAGCT 59.399 38.462 0.00 0.00 0.00 3.74
3312 4496 8.031864 TGTGCATGTTGAAAGAAAAAGAAGTAA 58.968 29.630 0.00 0.00 0.00 2.24
3342 4526 1.302285 CATCTCCAACAGCAGCCCT 59.698 57.895 0.00 0.00 0.00 5.19
3343 4527 0.543277 CATCTCCAACAGCAGCCCTA 59.457 55.000 0.00 0.00 0.00 3.53
3344 4528 1.065199 CATCTCCAACAGCAGCCCTAA 60.065 52.381 0.00 0.00 0.00 2.69
3345 4529 1.064003 TCTCCAACAGCAGCCCTAAA 58.936 50.000 0.00 0.00 0.00 1.85
3346 4530 1.423541 TCTCCAACAGCAGCCCTAAAA 59.576 47.619 0.00 0.00 0.00 1.52
3347 4531 1.815003 CTCCAACAGCAGCCCTAAAAG 59.185 52.381 0.00 0.00 0.00 2.27
3348 4532 0.244721 CCAACAGCAGCCCTAAAAGC 59.755 55.000 0.00 0.00 0.00 3.51
3357 4541 3.005367 GCAGCCCTAAAAGCTAAAACACA 59.995 43.478 0.00 0.00 38.95 3.72
3367 4551 6.720012 AAAGCTAAAACACAACACCAAAAG 57.280 33.333 0.00 0.00 0.00 2.27
3429 4613 8.203485 ACCTGAATTTTTCTTTATGCTTCAACA 58.797 29.630 0.00 0.00 0.00 3.33
3494 4678 3.370104 TGGTCACCAAAACATCCAAACT 58.630 40.909 0.00 0.00 0.00 2.66
3524 4708 6.939132 AATTTGATCCAAACATGCAAACAA 57.061 29.167 0.00 0.00 36.13 2.83
3609 4793 7.838884 ACTACAAACTACTTAGAGATTGTCCC 58.161 38.462 2.80 0.00 33.67 4.46
3643 4827 2.141517 GCCCGACTCATCATCTCAATG 58.858 52.381 0.00 0.00 0.00 2.82
3652 4836 4.436332 TCATCATCTCAATGTTCACCTCG 58.564 43.478 0.00 0.00 34.32 4.63
3663 4847 2.289444 TGTTCACCTCGTCCTCCAAATC 60.289 50.000 0.00 0.00 0.00 2.17
3690 4874 3.465403 CACCCTCGAGGAGCCAGG 61.465 72.222 33.39 16.91 39.89 4.45
3703 4887 3.522731 CCAGGCTCGTCCTCCTCG 61.523 72.222 0.00 0.00 45.52 4.63
3709 4893 1.306642 GCTCGTCCTCCTCGTTCTCA 61.307 60.000 0.00 0.00 0.00 3.27
3713 4900 0.382515 GTCCTCCTCGTTCTCATCCG 59.617 60.000 0.00 0.00 0.00 4.18
3717 4904 0.970937 TCCTCGTTCTCATCCGCCTT 60.971 55.000 0.00 0.00 0.00 4.35
3729 4916 0.178958 TCCGCCTTATCCTCCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
3766 4953 7.891183 TCCTTCTTGTTCTTCTACTCATACTCT 59.109 37.037 0.00 0.00 0.00 3.24
3787 4974 0.393077 CTTCGGCCACCCTTCGATAT 59.607 55.000 2.24 0.00 32.80 1.63
3871 5058 0.472471 AGGGGAGTTGAAAGCGACAA 59.528 50.000 0.00 0.00 0.00 3.18
3873 5060 1.886542 GGGGAGTTGAAAGCGACAAAT 59.113 47.619 0.00 0.00 0.00 2.32
3874 5061 2.296190 GGGGAGTTGAAAGCGACAAATT 59.704 45.455 0.00 0.00 0.00 1.82
3875 5062 3.504520 GGGGAGTTGAAAGCGACAAATTA 59.495 43.478 0.00 0.00 0.00 1.40
3889 5076 4.201724 CGACAAATTAGAAGTACCAGCAGC 60.202 45.833 0.00 0.00 0.00 5.25
3897 5084 2.097038 GTACCAGCAGCTGCAGTCG 61.097 63.158 38.24 23.71 45.16 4.18
3935 5122 8.515414 GGCTTTCTTTCTTCTTACATGTATTGT 58.485 33.333 6.36 0.00 42.62 2.71
3956 5143 0.813210 CTTGGCGCTCCTTGAGATCC 60.813 60.000 7.64 0.00 0.00 3.36
4038 5225 6.722129 AGACATCGTATATAAGGGAAGAAGCT 59.278 38.462 0.00 0.00 0.00 3.74
4046 5233 0.253394 AGGGAAGAAGCTAGCCCCTT 60.253 55.000 19.62 17.93 44.60 3.95
4047 5234 0.106967 GGGAAGAAGCTAGCCCCTTG 60.107 60.000 19.93 0.00 34.39 3.61
4048 5235 0.912486 GGAAGAAGCTAGCCCCTTGA 59.088 55.000 19.93 0.00 0.00 3.02
4050 5237 2.486370 GGAAGAAGCTAGCCCCTTGATC 60.486 54.545 19.93 8.96 0.00 2.92
4072 5259 3.679917 CGAAGAATGAAGAAGCTAGCCCA 60.680 47.826 12.13 2.48 0.00 5.36
4121 5308 0.736053 ATCTGTCTCGCTCCGTCTTC 59.264 55.000 0.00 0.00 0.00 2.87
4139 5326 6.072397 CCGTCTTCGAGGTCATAGAAAGATAT 60.072 42.308 0.00 0.00 39.71 1.63
4150 5337 7.327214 GTCATAGAAAGATATGAAGGGCCTAG 58.673 42.308 6.41 0.00 42.33 3.02
4196 5383 1.238439 CAGTGTCCGGCAAGTCAAAT 58.762 50.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
205 217 9.820725 GGTTTATAAACACATATTTAAACCCCC 57.179 33.333 25.59 2.91 40.63 5.40
206 218 9.820725 GGGTTTATAAACACATATTTAAACCCC 57.179 33.333 25.59 11.54 45.09 4.95
250 262 6.018588 CGACCGAACTATTTGCCATTACATTA 60.019 38.462 0.00 0.00 0.00 1.90
275 288 6.145535 AGCAGAAAAATTGTCATTCGAGTTC 58.854 36.000 0.00 0.00 0.00 3.01
286 299 7.307337 CGCTTTGGAAAATAGCAGAAAAATTGT 60.307 33.333 0.00 0.00 34.62 2.71
354 370 8.598075 CCAGATTTTGTTTTCTTTCTTTGACAG 58.402 33.333 0.00 0.00 0.00 3.51
381 397 5.852827 TGGCAAAGAGTTAAATGAAAAGGG 58.147 37.500 0.00 0.00 0.00 3.95
402 418 4.890158 AAAGGAATAAAAAGCCCACTGG 57.110 40.909 0.00 0.00 0.00 4.00
471 495 2.516930 CGCTTCGCCATGGGGAAT 60.517 61.111 36.12 0.00 44.13 3.01
528 563 2.527624 TGTGGCAGGAGGAGCACT 60.528 61.111 0.00 0.00 0.00 4.40
550 585 2.685897 GCAAATATTAGAACGGCCCACA 59.314 45.455 0.00 0.00 0.00 4.17
551 586 2.034179 GGCAAATATTAGAACGGCCCAC 59.966 50.000 0.00 0.00 33.93 4.61
557 594 4.201910 CCTGTGTGGGCAAATATTAGAACG 60.202 45.833 0.00 0.00 0.00 3.95
662 700 5.733620 ACCGTCTGACTAAAAATAGGACA 57.266 39.130 6.21 0.00 0.00 4.02
675 713 7.972277 TCACATCTAACTTTATAACCGTCTGAC 59.028 37.037 0.00 0.00 0.00 3.51
676 714 8.058667 TCACATCTAACTTTATAACCGTCTGA 57.941 34.615 0.00 0.00 0.00 3.27
677 715 8.188799 TCTCACATCTAACTTTATAACCGTCTG 58.811 37.037 0.00 0.00 0.00 3.51
678 716 8.289939 TCTCACATCTAACTTTATAACCGTCT 57.710 34.615 0.00 0.00 0.00 4.18
679 717 9.182933 GATCTCACATCTAACTTTATAACCGTC 57.817 37.037 0.00 0.00 0.00 4.79
680 718 8.915036 AGATCTCACATCTAACTTTATAACCGT 58.085 33.333 0.00 0.00 0.00 4.83
688 726 8.753133 TGTCACATAGATCTCACATCTAACTTT 58.247 33.333 0.00 0.00 34.67 2.66
689 727 8.298729 TGTCACATAGATCTCACATCTAACTT 57.701 34.615 0.00 0.00 34.67 2.66
690 728 7.888250 TGTCACATAGATCTCACATCTAACT 57.112 36.000 0.00 0.00 34.67 2.24
693 731 9.354673 TGTTATGTCACATAGATCTCACATCTA 57.645 33.333 0.00 0.00 35.38 1.98
694 732 8.242729 TGTTATGTCACATAGATCTCACATCT 57.757 34.615 0.00 0.00 0.00 2.90
695 733 8.877808 TTGTTATGTCACATAGATCTCACATC 57.122 34.615 0.00 0.00 0.00 3.06
696 734 9.842775 ATTTGTTATGTCACATAGATCTCACAT 57.157 29.630 0.00 4.17 0.00 3.21
697 735 9.317936 GATTTGTTATGTCACATAGATCTCACA 57.682 33.333 0.00 0.00 0.00 3.58
698 736 9.539825 AGATTTGTTATGTCACATAGATCTCAC 57.460 33.333 0.00 0.00 0.00 3.51
699 737 9.538508 CAGATTTGTTATGTCACATAGATCTCA 57.461 33.333 0.00 0.00 0.00 3.27
700 738 9.539825 ACAGATTTGTTATGTCACATAGATCTC 57.460 33.333 0.00 0.00 32.28 2.75
701 739 9.896645 AACAGATTTGTTATGTCACATAGATCT 57.103 29.630 0.00 0.00 45.45 2.75
704 742 8.655970 CGAAACAGATTTGTTATGTCACATAGA 58.344 33.333 1.50 0.00 46.54 1.98
705 743 7.904977 CCGAAACAGATTTGTTATGTCACATAG 59.095 37.037 1.50 0.00 46.54 2.23
706 744 7.604545 TCCGAAACAGATTTGTTATGTCACATA 59.395 33.333 1.50 0.00 46.54 2.29
707 745 6.429692 TCCGAAACAGATTTGTTATGTCACAT 59.570 34.615 1.50 0.00 46.54 3.21
708 746 5.760743 TCCGAAACAGATTTGTTATGTCACA 59.239 36.000 1.50 0.00 46.54 3.58
709 747 6.236017 TCCGAAACAGATTTGTTATGTCAC 57.764 37.500 1.50 0.00 46.54 3.67
710 748 6.869315 TTCCGAAACAGATTTGTTATGTCA 57.131 33.333 1.50 0.00 46.54 3.58
711 749 7.149192 CGTTTTCCGAAACAGATTTGTTATGTC 60.149 37.037 1.50 0.00 46.54 3.06
712 750 6.635239 CGTTTTCCGAAACAGATTTGTTATGT 59.365 34.615 1.50 0.00 46.54 2.29
713 751 6.635239 ACGTTTTCCGAAACAGATTTGTTATG 59.365 34.615 1.50 0.00 44.25 1.90
714 752 6.731164 ACGTTTTCCGAAACAGATTTGTTAT 58.269 32.000 1.50 0.00 44.25 1.89
715 753 6.121613 ACGTTTTCCGAAACAGATTTGTTA 57.878 33.333 1.50 0.00 44.25 2.41
716 754 4.989044 ACGTTTTCCGAAACAGATTTGTT 58.011 34.783 0.00 0.00 44.25 2.83
717 755 4.625972 ACGTTTTCCGAAACAGATTTGT 57.374 36.364 0.00 0.00 44.25 2.83
718 756 7.515643 ACTATACGTTTTCCGAAACAGATTTG 58.484 34.615 0.00 0.00 44.25 2.32
719 757 7.662604 ACTATACGTTTTCCGAAACAGATTT 57.337 32.000 0.00 0.00 44.25 2.17
720 758 8.031277 ACTACTATACGTTTTCCGAAACAGATT 58.969 33.333 0.00 0.00 44.25 2.40
721 759 7.487189 CACTACTATACGTTTTCCGAAACAGAT 59.513 37.037 0.00 0.00 44.25 2.90
722 760 6.803320 CACTACTATACGTTTTCCGAAACAGA 59.197 38.462 0.00 0.00 44.25 3.41
723 761 6.453396 GCACTACTATACGTTTTCCGAAACAG 60.453 42.308 0.00 0.00 44.25 3.16
724 762 5.345741 GCACTACTATACGTTTTCCGAAACA 59.654 40.000 0.00 0.00 44.25 2.83
781 819 2.222911 GCTAGCTCAATCCGAAATCTGC 59.777 50.000 7.70 0.00 0.00 4.26
830 868 2.728817 CCCAGCGGTATCGGAGTC 59.271 66.667 0.00 0.00 36.79 3.36
831 869 3.537874 GCCCAGCGGTATCGGAGT 61.538 66.667 0.00 0.00 36.79 3.85
876 914 8.047911 CCTAGCTAGATACTACTATAACAGGCA 58.952 40.741 22.70 0.00 0.00 4.75
931 1003 1.192793 GAACTACTCGATCGCACTGC 58.807 55.000 11.09 0.00 0.00 4.40
936 1008 2.344741 GTGTTTGGAACTACTCGATCGC 59.655 50.000 11.09 0.00 0.00 4.58
940 1012 3.668757 CGATCGTGTTTGGAACTACTCGA 60.669 47.826 7.03 0.00 40.96 4.04
941 1013 2.592897 CGATCGTGTTTGGAACTACTCG 59.407 50.000 7.03 0.00 34.13 4.18
942 1014 3.607209 GTCGATCGTGTTTGGAACTACTC 59.393 47.826 15.94 0.00 0.00 2.59
943 1015 3.005050 TGTCGATCGTGTTTGGAACTACT 59.995 43.478 15.94 0.00 0.00 2.57
944 1016 3.311106 TGTCGATCGTGTTTGGAACTAC 58.689 45.455 15.94 1.55 0.00 2.73
957 1044 0.869454 GGCTCTTCAGCTGTCGATCG 60.869 60.000 14.67 9.36 46.03 3.69
958 1045 0.529555 GGGCTCTTCAGCTGTCGATC 60.530 60.000 14.67 6.93 46.03 3.69
959 1046 0.975040 AGGGCTCTTCAGCTGTCGAT 60.975 55.000 14.67 0.00 46.03 3.59
960 1047 0.323451 TAGGGCTCTTCAGCTGTCGA 60.323 55.000 14.67 10.29 46.03 4.20
967 1054 1.265635 CGATCGAGTAGGGCTCTTCAG 59.734 57.143 10.26 0.00 41.98 3.02
998 1095 1.527380 ACAAACGGTTCATGGCGGT 60.527 52.632 0.00 0.00 0.00 5.68
999 1096 1.081509 CACAAACGGTTCATGGCGG 60.082 57.895 0.00 0.00 0.00 6.13
1000 1097 1.081509 CCACAAACGGTTCATGGCG 60.082 57.895 9.62 0.00 0.00 5.69
1001 1098 0.318614 CACCACAAACGGTTCATGGC 60.319 55.000 18.41 0.00 37.07 4.40
1132 1288 3.742353 CGAAGCACAGTCGTCGAG 58.258 61.111 0.00 0.00 39.65 4.04
1161 1344 1.610554 CCGAGGGTCGTGGTACCAAT 61.611 60.000 18.31 0.00 41.67 3.16
1304 1493 2.504519 GGCGGCGAATAGGGAGTT 59.495 61.111 12.98 0.00 0.00 3.01
1329 1518 1.071471 CTATGCCGGTGGATGGACC 59.929 63.158 1.90 0.00 39.54 4.46
1340 1529 1.006102 GGTCGACCATCCTATGCCG 60.006 63.158 29.75 0.00 35.64 5.69
1600 1800 3.463944 CAGTCCCGTGAACACTAAAAGT 58.536 45.455 3.51 0.00 0.00 2.66
1676 1876 0.685097 GCTATCTTGGCCCGGATACA 59.315 55.000 0.73 0.00 0.00 2.29
1738 2199 3.449018 AGATAACCAGCGACAGACTTCAT 59.551 43.478 0.00 0.00 0.00 2.57
1791 2289 9.852091 ACTTAGTTCACTACTAATAAAGGAACG 57.148 33.333 0.00 0.00 45.74 3.95
2243 2782 4.572571 AAAACCAGCCGACCGCCA 62.573 61.111 0.00 0.00 38.78 5.69
2249 2788 0.960364 GGAGATGCAAAACCAGCCGA 60.960 55.000 0.00 0.00 0.00 5.54
2307 2846 6.692681 CCAACTCCAATAGATAATGCAAAACG 59.307 38.462 0.00 0.00 0.00 3.60
2358 2897 9.689976 TGTTGTATAATTCACATCACCAAAAAG 57.310 29.630 0.00 0.00 0.00 2.27
2651 3832 5.991328 AGGTGCATATTAACGTGAGAATG 57.009 39.130 0.00 0.00 0.00 2.67
2668 3849 3.545703 AGGTACTTTGATGCATAGGTGC 58.454 45.455 0.00 0.00 45.45 5.01
2716 3897 4.267690 CCTACGTACATACACATGCAACAG 59.732 45.833 0.00 0.00 35.39 3.16
2828 4009 6.317391 AGAATAACTTCTGGCAATTGTAGCTC 59.683 38.462 7.40 0.00 40.28 4.09
2858 4039 9.290988 GATGAGTAGTATCTAGGATCTGTTTCA 57.709 37.037 0.00 0.00 0.00 2.69
3012 4193 8.827832 AAATACCATTTTCATCTGAGATGGAA 57.172 30.769 21.27 16.86 39.71 3.53
3120 4301 6.715280 TCAGCTTCCTTTCTCATACTCAAAT 58.285 36.000 0.00 0.00 0.00 2.32
3312 4496 1.568504 TGGAGATGCTCTAACCCGTT 58.431 50.000 0.00 0.00 0.00 4.44
3342 4526 7.332182 CCTTTTGGTGTTGTGTTTTAGCTTTTA 59.668 33.333 0.00 0.00 34.07 1.52
3343 4527 6.148645 CCTTTTGGTGTTGTGTTTTAGCTTTT 59.851 34.615 0.00 0.00 34.07 2.27
3344 4528 5.641636 CCTTTTGGTGTTGTGTTTTAGCTTT 59.358 36.000 0.00 0.00 34.07 3.51
3345 4529 5.175127 CCTTTTGGTGTTGTGTTTTAGCTT 58.825 37.500 0.00 0.00 34.07 3.74
3346 4530 4.754322 CCTTTTGGTGTTGTGTTTTAGCT 58.246 39.130 0.00 0.00 34.07 3.32
3451 4635 2.103042 GGCAGCTGTTGGAGTAGCG 61.103 63.158 16.64 0.00 44.43 4.26
3494 4678 6.653740 TGCATGTTTGGATCAAATTTGCAATA 59.346 30.769 20.32 5.45 43.68 1.90
3589 4773 4.776308 ACCGGGACAATCTCTAAGTAGTTT 59.224 41.667 6.32 0.00 0.00 2.66
3609 4793 2.822399 GGGCTCCCACATAGACCG 59.178 66.667 0.00 0.00 30.80 4.79
3635 4819 2.834549 AGGACGAGGTGAACATTGAGAT 59.165 45.455 0.00 0.00 0.00 2.75
3643 4827 2.347731 GATTTGGAGGACGAGGTGAAC 58.652 52.381 0.00 0.00 0.00 3.18
3663 4847 2.618165 TCGAGGGTGATCGAGATCG 58.382 57.895 8.37 0.00 46.20 3.69
3690 4874 1.306642 TGAGAACGAGGAGGACGAGC 61.307 60.000 0.00 0.00 34.70 5.03
3694 4878 0.382515 CGGATGAGAACGAGGAGGAC 59.617 60.000 0.00 0.00 0.00 3.85
3703 4887 2.289133 GGAGGATAAGGCGGATGAGAAC 60.289 54.545 0.00 0.00 0.00 3.01
3709 4893 0.489567 AGGAGGAGGATAAGGCGGAT 59.510 55.000 0.00 0.00 0.00 4.18
3713 4900 1.974957 GAAGGAGGAGGAGGATAAGGC 59.025 57.143 0.00 0.00 0.00 4.35
3717 4904 2.719705 GAGGAGAAGGAGGAGGAGGATA 59.280 54.545 0.00 0.00 0.00 2.59
3729 4916 2.545810 ACAAGAAGGAGGAGGAGAAGG 58.454 52.381 0.00 0.00 0.00 3.46
3766 4953 4.697756 CGAAGGGTGGCCGAAGCA 62.698 66.667 0.00 0.00 42.56 3.91
3810 4997 8.709386 TCTAGAGCAAGTGTGAAAGAATAATC 57.291 34.615 0.00 0.00 0.00 1.75
3871 5058 3.274288 GCAGCTGCTGGTACTTCTAATT 58.726 45.455 31.33 0.00 38.21 1.40
3873 5060 1.623311 TGCAGCTGCTGGTACTTCTAA 59.377 47.619 36.61 11.53 42.66 2.10
3874 5061 1.205655 CTGCAGCTGCTGGTACTTCTA 59.794 52.381 36.61 13.65 42.66 2.10
3875 5062 0.036577 CTGCAGCTGCTGGTACTTCT 60.037 55.000 36.61 0.00 42.66 2.85
3889 5076 2.069273 CTTTTCCACCTACGACTGCAG 58.931 52.381 13.48 13.48 0.00 4.41
3897 5084 4.827835 AGAAAGAAAGCCTTTTCCACCTAC 59.172 41.667 0.00 0.00 44.63 3.18
3956 5143 2.045926 CTTCGGGGGCTGTTCTGG 60.046 66.667 0.00 0.00 0.00 3.86
4038 5225 3.038280 TCATTCTTCGATCAAGGGGCTA 58.962 45.455 0.00 0.00 32.22 3.93
4046 5233 5.046529 GCTAGCTTCTTCATTCTTCGATCA 58.953 41.667 7.70 0.00 0.00 2.92
4047 5234 4.447389 GGCTAGCTTCTTCATTCTTCGATC 59.553 45.833 15.72 0.00 0.00 3.69
4048 5235 4.376146 GGCTAGCTTCTTCATTCTTCGAT 58.624 43.478 15.72 0.00 0.00 3.59
4050 5237 2.869192 GGGCTAGCTTCTTCATTCTTCG 59.131 50.000 15.72 0.00 0.00 3.79
4072 5259 5.079689 GCAAGAGCTCTTAAAGTCTACCT 57.920 43.478 28.02 0.00 37.91 3.08
4121 5308 6.393990 CCCTTCATATCTTTCTATGACCTCG 58.606 44.000 0.00 0.00 37.74 4.63
4139 5326 0.541063 TCACGTGACTAGGCCCTTCA 60.541 55.000 15.76 0.00 0.00 3.02
4150 5337 1.674611 CGCCTTCGACATCACGTGAC 61.675 60.000 22.71 7.55 38.10 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.