Multiple sequence alignment - TraesCS5B01G018600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G018600 chr5B 100.000 4938 0 0 1 4938 17970355 17975292 0.000000e+00 9119.0
1 TraesCS5B01G018600 chr5B 90.698 258 18 3 3843 4098 69574319 69574066 6.120000e-89 339.0
2 TraesCS5B01G018600 chr5B 89.266 177 14 3 4235 4410 69573748 69573576 2.990000e-52 217.0
3 TraesCS5B01G018600 chr5B 95.294 85 4 0 3717 3801 192087464 192087548 8.620000e-28 135.0
4 TraesCS5B01G018600 chr5B 88.776 98 5 2 4110 4207 69574141 69574050 1.120000e-21 115.0
5 TraesCS5B01G018600 chr5B 96.774 31 1 0 4114 4144 192087558 192087588 9.000000e-03 52.8
6 TraesCS5B01G018600 chr5D 90.648 2160 104 50 521 2634 25312099 25309992 0.000000e+00 2780.0
7 TraesCS5B01G018600 chr5D 96.877 1441 42 3 2667 4106 25309997 25308559 0.000000e+00 2409.0
8 TraesCS5B01G018600 chr5D 84.666 763 43 35 4230 4938 25308158 25307416 0.000000e+00 693.0
9 TraesCS5B01G018600 chr5D 89.607 433 38 4 3 434 25312516 25312090 1.210000e-150 544.0
10 TraesCS5B01G018600 chr5D 83.036 224 9 15 4726 4938 516962371 516962576 5.080000e-40 176.0
11 TraesCS5B01G018600 chr5D 90.551 127 9 2 3961 4087 25308502 25308379 1.100000e-36 165.0
12 TraesCS5B01G018600 chr5A 89.183 2154 139 39 521 2634 17829762 17831861 0.000000e+00 2601.0
13 TraesCS5B01G018600 chr5A 96.806 1440 44 2 2667 4106 17831856 17833293 0.000000e+00 2403.0
14 TraesCS5B01G018600 chr5A 89.655 435 36 8 1 434 17829345 17829771 3.360000e-151 545.0
15 TraesCS5B01G018600 chr5A 94.318 88 5 0 3718 3805 504543200 504543287 8.620000e-28 135.0
16 TraesCS5B01G018600 chr5A 90.244 41 3 1 4104 4144 504543284 504543323 9.000000e-03 52.8
17 TraesCS5B01G018600 chr6B 93.258 89 6 0 3717 3805 183060521 183060433 1.120000e-26 132.0
18 TraesCS5B01G018600 chr6B 90.816 98 6 1 4110 4207 642296990 642296896 1.440000e-25 128.0
19 TraesCS5B01G018600 chr6B 90.000 90 8 1 3717 3805 430964599 430964510 1.120000e-21 115.0
20 TraesCS5B01G018600 chr6B 92.105 76 6 0 3781 3856 642297155 642297080 1.880000e-19 108.0
21 TraesCS5B01G018600 chr6B 90.244 41 3 1 4104 4144 635775358 635775397 9.000000e-03 52.8
22 TraesCS5B01G018600 chr1B 91.765 85 7 0 3717 3801 128745595 128745679 8.680000e-23 119.0
23 TraesCS5B01G018600 chr1B 96.774 31 1 0 4114 4144 128745689 128745719 9.000000e-03 52.8
24 TraesCS5B01G018600 chr2B 98.113 53 1 0 3718 3770 702038712 702038764 5.260000e-15 93.5
25 TraesCS5B01G018600 chr2B 89.552 67 4 1 4138 4204 702038757 702038820 1.140000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G018600 chr5B 17970355 17975292 4937 False 9119.000000 9119 100.000000 1 4938 1 chr5B.!!$F1 4937
1 TraesCS5B01G018600 chr5B 69573576 69574319 743 True 223.666667 339 89.580000 3843 4410 3 chr5B.!!$R1 567
2 TraesCS5B01G018600 chr5D 25307416 25312516 5100 True 1318.200000 2780 90.469800 3 4938 5 chr5D.!!$R1 4935
3 TraesCS5B01G018600 chr5A 17829345 17833293 3948 False 1849.666667 2601 91.881333 1 4106 3 chr5A.!!$F1 4105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 467 0.310543 CAACTTTGCTGCTACGCCAA 59.689 50.0 0.00 0.00 0.00 4.52 F
1221 1286 0.031585 GGGGTTTTGGTTGCTTCGTC 59.968 55.0 0.00 0.00 0.00 4.20 F
2203 2280 0.185901 ACTGCCATGGTGGTTTCTGT 59.814 50.0 14.67 2.59 40.46 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1829 1905 0.105964 CAGGAGGGAACGAACACACA 59.894 55.0 0.0 0.0 0.00 3.72 R
2777 2856 0.984995 AGGGTTAGTCAAGCAGTCCC 59.015 55.0 0.0 0.0 33.68 4.46 R
4016 4097 0.409092 ACCAATGCCCAGGATCACAA 59.591 50.0 0.0 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.737219 GGTATAGCGACGACACCAGT 59.263 55.000 0.00 0.00 0.00 4.00
41 42 2.197643 GACGACACCAGTCTCGGACC 62.198 65.000 0.70 0.00 42.73 4.46
43 44 1.595993 CGACACCAGTCTCGGACCAT 61.596 60.000 0.00 0.00 42.73 3.55
46 47 1.913262 ACCAGTCTCGGACCATGCA 60.913 57.895 0.00 0.00 32.18 3.96
51 52 1.683917 AGTCTCGGACCATGCAGATAC 59.316 52.381 0.00 0.00 32.18 2.24
60 61 3.689347 ACCATGCAGATACAAAGCAAGA 58.311 40.909 0.00 0.00 42.15 3.02
75 76 3.283812 AAGAGCGGAGGGACGGAGA 62.284 63.158 0.00 0.00 0.00 3.71
83 84 1.478916 GGAGGGACGGAGAGAGAAAAG 59.521 57.143 0.00 0.00 0.00 2.27
104 105 2.761195 GCGCTCCGGATGGGTTTTC 61.761 63.158 3.57 0.00 37.00 2.29
119 120 2.575455 TTTTCTGTGGGGGTTGCGGT 62.575 55.000 0.00 0.00 0.00 5.68
195 196 8.951243 AGATTTGCTTCTGGTTAGTAGAATTTC 58.049 33.333 0.00 0.00 33.99 2.17
203 204 7.211573 TCTGGTTAGTAGAATTTCGAAACACA 58.788 34.615 13.81 0.00 0.00 3.72
216 218 1.963464 AAACACACGGACTGGTCGGT 61.963 55.000 7.89 7.89 42.71 4.69
245 248 2.282407 TCATGCATGACGTTGGATGAG 58.718 47.619 25.42 0.00 45.77 2.90
260 263 2.618053 GATGAGACAAAGTGTACGGGG 58.382 52.381 0.00 0.00 0.00 5.73
286 289 2.560861 GGCGCTTCGATGCACAAA 59.439 55.556 21.52 0.00 0.00 2.83
335 338 3.860968 TTTTCCCCGAGTTAAACCTCA 57.139 42.857 0.00 0.00 0.00 3.86
336 339 4.376225 TTTTCCCCGAGTTAAACCTCAT 57.624 40.909 0.00 0.00 0.00 2.90
342 345 4.814771 CCCCGAGTTAAACCTCATAATGTC 59.185 45.833 0.00 0.00 0.00 3.06
343 346 5.424757 CCCGAGTTAAACCTCATAATGTCA 58.575 41.667 0.00 0.00 0.00 3.58
355 358 8.709386 ACCTCATAATGTCATTATCTTATCGC 57.291 34.615 14.07 0.00 33.34 4.58
359 362 9.874205 TCATAATGTCATTATCTTATCGCATGA 57.126 29.630 14.07 5.85 33.34 3.07
362 365 8.837788 AATGTCATTATCTTATCGCATGAAGA 57.162 30.769 0.00 0.00 36.18 2.87
394 397 0.387239 GCACGACAACCAATTGGAGC 60.387 55.000 31.22 16.71 40.42 4.70
430 433 8.091449 TGTCAAATTTACCCAAACATAACCATC 58.909 33.333 0.00 0.00 0.00 3.51
431 434 8.091449 GTCAAATTTACCCAAACATAACCATCA 58.909 33.333 0.00 0.00 0.00 3.07
432 435 8.310382 TCAAATTTACCCAAACATAACCATCAG 58.690 33.333 0.00 0.00 0.00 2.90
433 436 8.310382 CAAATTTACCCAAACATAACCATCAGA 58.690 33.333 0.00 0.00 0.00 3.27
434 437 8.429237 AATTTACCCAAACATAACCATCAGAA 57.571 30.769 0.00 0.00 0.00 3.02
435 438 8.608185 ATTTACCCAAACATAACCATCAGAAT 57.392 30.769 0.00 0.00 0.00 2.40
436 439 7.639113 TTACCCAAACATAACCATCAGAATC 57.361 36.000 0.00 0.00 0.00 2.52
437 440 4.956075 ACCCAAACATAACCATCAGAATCC 59.044 41.667 0.00 0.00 0.00 3.01
438 441 4.342092 CCCAAACATAACCATCAGAATCCC 59.658 45.833 0.00 0.00 0.00 3.85
439 442 4.955450 CCAAACATAACCATCAGAATCCCA 59.045 41.667 0.00 0.00 0.00 4.37
440 443 5.421693 CCAAACATAACCATCAGAATCCCAA 59.578 40.000 0.00 0.00 0.00 4.12
441 444 6.070881 CCAAACATAACCATCAGAATCCCAAA 60.071 38.462 0.00 0.00 0.00 3.28
442 445 7.385267 CAAACATAACCATCAGAATCCCAAAA 58.615 34.615 0.00 0.00 0.00 2.44
443 446 7.552050 AACATAACCATCAGAATCCCAAAAA 57.448 32.000 0.00 0.00 0.00 1.94
461 464 2.119671 AAACAACTTTGCTGCTACGC 57.880 45.000 0.00 0.00 0.00 4.42
462 465 0.310854 AACAACTTTGCTGCTACGCC 59.689 50.000 0.00 0.00 0.00 5.68
463 466 0.817634 ACAACTTTGCTGCTACGCCA 60.818 50.000 0.00 0.00 0.00 5.69
464 467 0.310543 CAACTTTGCTGCTACGCCAA 59.689 50.000 0.00 0.00 0.00 4.52
465 468 1.028905 AACTTTGCTGCTACGCCAAA 58.971 45.000 0.00 0.00 0.00 3.28
466 469 1.028905 ACTTTGCTGCTACGCCAAAA 58.971 45.000 0.00 0.00 0.00 2.44
467 470 1.407258 ACTTTGCTGCTACGCCAAAAA 59.593 42.857 0.00 0.00 0.00 1.94
506 509 8.824159 TGTATCCCAAACAAATTTTATGTGTG 57.176 30.769 0.00 0.00 36.06 3.82
507 510 8.642432 TGTATCCCAAACAAATTTTATGTGTGA 58.358 29.630 1.19 0.00 38.10 3.58
508 511 9.482627 GTATCCCAAACAAATTTTATGTGTGAA 57.517 29.630 1.19 0.00 38.10 3.18
510 513 8.970859 TCCCAAACAAATTTTATGTGTGAATT 57.029 26.923 1.19 0.00 38.10 2.17
511 514 8.834465 TCCCAAACAAATTTTATGTGTGAATTG 58.166 29.630 1.19 0.00 38.10 2.32
512 515 7.590689 CCCAAACAAATTTTATGTGTGAATTGC 59.409 33.333 1.19 0.00 38.10 3.56
513 516 8.127327 CCAAACAAATTTTATGTGTGAATTGCA 58.873 29.630 1.19 0.00 38.10 4.08
514 517 9.666626 CAAACAAATTTTATGTGTGAATTGCAT 57.333 25.926 0.00 0.00 38.10 3.96
515 518 9.881529 AAACAAATTTTATGTGTGAATTGCATC 57.118 25.926 0.00 0.00 0.00 3.91
516 519 7.731720 ACAAATTTTATGTGTGAATTGCATCG 58.268 30.769 0.00 0.00 0.00 3.84
517 520 7.598118 ACAAATTTTATGTGTGAATTGCATCGA 59.402 29.630 0.00 0.00 0.00 3.59
518 521 8.433893 CAAATTTTATGTGTGAATTGCATCGAA 58.566 29.630 0.00 0.00 0.00 3.71
519 522 8.531622 AATTTTATGTGTGAATTGCATCGAAA 57.468 26.923 0.00 0.00 0.00 3.46
520 523 7.936950 TTTTATGTGTGAATTGCATCGAAAA 57.063 28.000 0.00 0.00 0.00 2.29
521 524 7.936950 TTTATGTGTGAATTGCATCGAAAAA 57.063 28.000 0.00 0.00 0.00 1.94
522 525 5.827568 ATGTGTGAATTGCATCGAAAAAC 57.172 34.783 0.00 0.00 0.00 2.43
523 526 4.047822 TGTGTGAATTGCATCGAAAAACC 58.952 39.130 0.00 0.00 0.00 3.27
524 527 4.047822 GTGTGAATTGCATCGAAAAACCA 58.952 39.130 0.00 0.00 0.00 3.67
525 528 4.685628 GTGTGAATTGCATCGAAAAACCAT 59.314 37.500 0.00 0.00 0.00 3.55
537 540 7.834529 CATCGAAAAACCATTAGATGCATTTC 58.165 34.615 0.00 0.00 36.23 2.17
543 546 8.947055 AAAACCATTAGATGCATTTCCATAAC 57.053 30.769 0.00 0.00 0.00 1.89
561 564 5.639082 CCATAACCAACAAATTCTCTTTGCC 59.361 40.000 0.00 0.00 32.93 4.52
567 570 5.230182 CAACAAATTCTCTTTGCCTAACCC 58.770 41.667 0.00 0.00 32.93 4.11
584 588 3.596362 CCCCCATGAAGTCTTTCCC 57.404 57.895 0.00 0.00 32.09 3.97
587 591 0.704076 CCCATGAAGTCTTTCCCCCA 59.296 55.000 0.00 0.00 32.09 4.96
605 609 4.569653 CCCCCATCAAGATAAACCTCACAA 60.570 45.833 0.00 0.00 0.00 3.33
607 611 5.068198 CCCCATCAAGATAAACCTCACAATG 59.932 44.000 0.00 0.00 0.00 2.82
608 612 5.450965 CCCATCAAGATAAACCTCACAATGC 60.451 44.000 0.00 0.00 0.00 3.56
617 621 2.928334 ACCTCACAATGCCATCATCTC 58.072 47.619 0.00 0.00 31.27 2.75
622 626 4.386711 TCACAATGCCATCATCTCATCTC 58.613 43.478 0.00 0.00 31.27 2.75
663 667 2.342179 CCACAACAACCCAAACACAAC 58.658 47.619 0.00 0.00 0.00 3.32
699 709 4.564769 CACACACACATAAACCCAAACAAC 59.435 41.667 0.00 0.00 0.00 3.32
708 718 8.293157 CACATAAACCCAAACAACAAAAACTTT 58.707 29.630 0.00 0.00 0.00 2.66
717 727 7.593273 CCAAACAACAAAAACTTTCCCTTTTTC 59.407 33.333 0.00 0.00 30.09 2.29
738 770 2.350772 CGAACCTTGTTGAGTCCATTGC 60.351 50.000 0.00 0.00 0.00 3.56
744 776 4.431809 CTTGTTGAGTCCATTGCAAACAA 58.568 39.130 1.71 6.06 40.87 2.83
745 777 3.779759 TGTTGAGTCCATTGCAAACAAC 58.220 40.909 1.71 13.03 38.99 3.32
777 809 2.206576 ACCTCAGGGCTAAGCAAAAG 57.793 50.000 0.00 0.00 35.63 2.27
778 810 1.705186 ACCTCAGGGCTAAGCAAAAGA 59.295 47.619 0.00 0.00 35.63 2.52
779 811 2.290577 ACCTCAGGGCTAAGCAAAAGAG 60.291 50.000 0.00 0.00 35.63 2.85
802 834 1.688735 AGGCAAAGAGGGCAACTTTTC 59.311 47.619 5.62 2.22 35.74 2.29
814 846 4.419939 CTTTTCGCCGGGCCTTGC 62.420 66.667 14.55 4.61 0.00 4.01
845 877 2.914695 GGTAAAAACCGGCCCTTTTT 57.085 45.000 18.10 18.10 35.49 1.94
877 919 2.501223 TAACCCCAACGCGCTCTCTG 62.501 60.000 5.73 0.00 0.00 3.35
913 955 0.455815 CATAAAAACCTCCGCTGGGC 59.544 55.000 0.00 0.00 0.00 5.36
917 959 2.920076 AAAACCTCCGCTGGGCAACA 62.920 55.000 0.00 0.00 39.74 3.33
946 988 1.123928 CTCTTGCGGAATCCCTACCT 58.876 55.000 0.00 0.00 0.00 3.08
947 989 1.486726 CTCTTGCGGAATCCCTACCTT 59.513 52.381 0.00 0.00 0.00 3.50
948 990 1.485066 TCTTGCGGAATCCCTACCTTC 59.515 52.381 0.00 0.00 0.00 3.46
949 991 0.544697 TTGCGGAATCCCTACCTTCC 59.455 55.000 0.00 0.00 38.03 3.46
977 1029 0.411848 CCCTCCCCTCTCTATCTCCC 59.588 65.000 0.00 0.00 0.00 4.30
990 1042 0.560688 ATCTCCCCTCTCCACTCCTC 59.439 60.000 0.00 0.00 0.00 3.71
991 1043 1.075600 CTCCCCTCTCCACTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
992 1044 1.547755 TCCCCTCTCCACTCCTCCT 60.548 63.158 0.00 0.00 0.00 3.69
1159 1214 1.335872 GCCTGTTCCGGTTGATTGTTG 60.336 52.381 0.00 0.00 0.00 3.33
1178 1233 0.106894 GGTTCCCCTGCGAATAGGAG 59.893 60.000 2.75 0.00 40.42 3.69
1221 1286 0.031585 GGGGTTTTGGTTGCTTCGTC 59.968 55.000 0.00 0.00 0.00 4.20
1324 1389 3.383505 AGGAATATTTTGCGGGGTTTAGC 59.616 43.478 0.00 0.00 0.00 3.09
1360 1425 2.413634 CCGCCGGTTGTTCAAGAATTAC 60.414 50.000 1.90 0.00 0.00 1.89
1377 1442 0.983467 TACGGGGGTTTAGGTTGGTC 59.017 55.000 0.00 0.00 0.00 4.02
1429 1494 1.587043 GCCGGTTTCTTGCTCCCTTC 61.587 60.000 1.90 0.00 0.00 3.46
1454 1519 7.121759 TCAGGATGAAATTCCTCTTGAATGTTC 59.878 37.037 9.81 0.00 45.97 3.18
1475 1540 1.270094 GGAACGCAAAGGGGGAAAAAG 60.270 52.381 0.00 0.00 0.00 2.27
1498 1563 0.678048 AAATGGCGGCTCTGTTCCTC 60.678 55.000 11.43 0.00 0.00 3.71
1503 1568 0.246635 GCGGCTCTGTTCCTCTGTTA 59.753 55.000 0.00 0.00 0.00 2.41
1505 1570 1.546476 CGGCTCTGTTCCTCTGTTACT 59.454 52.381 0.00 0.00 0.00 2.24
1517 1582 8.671028 TGTTCCTCTGTTACTTTTTACTGTTTC 58.329 33.333 0.00 0.00 0.00 2.78
1553 1618 3.254892 GAGGAATCCTTCTGTTCACGTC 58.745 50.000 2.09 0.00 31.76 4.34
1570 1635 5.828747 TCACGTCTGTGTCTATTATTAGGC 58.171 41.667 0.00 0.00 46.49 3.93
1573 1638 5.066893 ACGTCTGTGTCTATTATTAGGCGAA 59.933 40.000 0.00 0.00 36.82 4.70
1574 1639 6.150318 CGTCTGTGTCTATTATTAGGCGAAT 58.850 40.000 0.00 0.00 35.50 3.34
1589 1654 5.186996 AGGCGAATATATTGCTTTGGTTG 57.813 39.130 1.78 0.00 0.00 3.77
1693 1758 5.163457 CGTGCAATAATTGTTTTATCCCCCT 60.163 40.000 0.00 0.00 0.00 4.79
1770 1835 7.549615 AAGTAGTATTATGTTTCCCTTTCGC 57.450 36.000 0.00 0.00 0.00 4.70
1829 1905 4.996758 TGTCTTGAATCAATGTCGATGTGT 59.003 37.500 0.00 0.00 0.00 3.72
1830 1906 5.106987 TGTCTTGAATCAATGTCGATGTGTG 60.107 40.000 0.00 0.00 0.00 3.82
1832 1908 4.666928 TGAATCAATGTCGATGTGTGTG 57.333 40.909 0.00 0.00 0.00 3.82
1857 1933 1.726853 GTTCCCTCCTGTCATTGTCG 58.273 55.000 0.00 0.00 0.00 4.35
1864 1940 2.076100 TCCTGTCATTGTCGTTGCATC 58.924 47.619 0.00 0.00 0.00 3.91
1903 1979 2.629656 CCTTTTGGCCGCTGTGAGG 61.630 63.158 0.00 0.00 0.00 3.86
1942 2018 6.699204 AGATTGCGACAGAGATATTGTAGTTG 59.301 38.462 0.00 0.00 0.00 3.16
1949 2025 7.952101 CGACAGAGATATTGTAGTTGTTTTGTG 59.048 37.037 0.00 0.00 0.00 3.33
1950 2026 8.677148 ACAGAGATATTGTAGTTGTTTTGTGT 57.323 30.769 0.00 0.00 0.00 3.72
1951 2027 9.772973 ACAGAGATATTGTAGTTGTTTTGTGTA 57.227 29.630 0.00 0.00 0.00 2.90
1954 2030 9.901724 GAGATATTGTAGTTGTTTTGTGTATCG 57.098 33.333 0.00 0.00 0.00 2.92
2053 2130 2.552743 GGTTTGGTCTGTAACTCCTTGC 59.447 50.000 0.00 0.00 0.00 4.01
2073 2150 3.091545 GCAGGATTCAAGGAAACATCCA 58.908 45.455 0.00 0.00 0.00 3.41
2130 2207 6.228258 TCGGTTATGTTCCTCATATTTAGCC 58.772 40.000 0.00 0.00 38.59 3.93
2137 2214 6.349300 TGTTCCTCATATTTAGCCTTGACTC 58.651 40.000 0.00 0.00 0.00 3.36
2152 2229 3.917329 TGACTCAAGTTCGTGGACTAG 57.083 47.619 0.00 0.00 0.00 2.57
2203 2280 0.185901 ACTGCCATGGTGGTTTCTGT 59.814 50.000 14.67 2.59 40.46 3.41
2225 2302 4.592485 TCCACGGTGTTTAATTGCATTT 57.408 36.364 7.45 0.00 0.00 2.32
2226 2303 4.302455 TCCACGGTGTTTAATTGCATTTG 58.698 39.130 7.45 0.00 0.00 2.32
2227 2304 4.054671 CCACGGTGTTTAATTGCATTTGT 58.945 39.130 7.45 0.00 0.00 2.83
2228 2305 4.084641 CCACGGTGTTTAATTGCATTTGTG 60.085 41.667 7.45 2.31 0.00 3.33
2229 2306 4.742167 CACGGTGTTTAATTGCATTTGTGA 59.258 37.500 4.11 0.00 0.00 3.58
2230 2307 4.742659 ACGGTGTTTAATTGCATTTGTGAC 59.257 37.500 4.11 1.56 0.00 3.67
2231 2308 4.981674 CGGTGTTTAATTGCATTTGTGACT 59.018 37.500 4.11 0.00 0.00 3.41
2232 2309 5.107913 CGGTGTTTAATTGCATTTGTGACTG 60.108 40.000 4.11 0.00 0.00 3.51
2241 2318 3.318557 TGCATTTGTGACTGAAGCATGAA 59.681 39.130 0.00 0.00 0.00 2.57
2247 2324 9.146984 CATTTGTGACTGAAGCATGAATTTTAT 57.853 29.630 0.00 0.00 0.00 1.40
2255 2332 8.702438 ACTGAAGCATGAATTTTATTTTCGTTG 58.298 29.630 0.00 0.00 0.00 4.10
2330 2407 2.744352 TGCCCCCAAAGCAAATTTTT 57.256 40.000 0.00 0.00 37.28 1.94
2354 2431 6.484288 TCTATTGATTGATGGTGTGGACTTT 58.516 36.000 0.00 0.00 0.00 2.66
2405 2482 4.142004 ACTGTAGGACTGTTTGTTCTTCGT 60.142 41.667 0.00 0.00 35.73 3.85
2412 2489 5.404667 GGACTGTTTGTTCTTCGTTAGTAGG 59.595 44.000 0.00 0.00 0.00 3.18
2450 2528 7.432869 TCTGTTTGGAAATTTGTTACTCCATG 58.567 34.615 0.00 0.00 37.78 3.66
2456 2534 6.095377 GGAAATTTGTTACTCCATGCTTCTG 58.905 40.000 0.00 0.00 0.00 3.02
2502 2580 1.134371 GCCAATGACAGTCCCTAGTCC 60.134 57.143 0.00 0.00 33.89 3.85
2560 2638 5.559770 TCATCCTCACATGCTTGTTTCTTA 58.440 37.500 1.83 0.00 32.34 2.10
2723 2801 1.726853 ACGTGCCATGCTACTCTTTC 58.273 50.000 0.00 0.00 0.00 2.62
2777 2856 4.837860 AGAGTGGCTCTCCATCTATTTAGG 59.162 45.833 12.65 0.00 45.62 2.69
2838 2917 3.074412 AGAACAAGCATCTGTAAACCCG 58.926 45.455 0.00 0.00 0.00 5.28
2910 2989 5.337169 CCTGGCCTCTGTTATAAGAGATAGC 60.337 48.000 18.96 18.96 45.59 2.97
2943 3022 0.321564 TCCTGATTGTTGAGCCACCG 60.322 55.000 0.00 0.00 0.00 4.94
3044 3123 0.535102 AAACTGGAGCAGGAACACGG 60.535 55.000 0.00 0.00 35.51 4.94
3050 3129 3.056328 GCAGGAACACGGGGAAGC 61.056 66.667 0.00 0.00 0.00 3.86
3135 3214 0.383949 CCAACTCCAACCAAACACCG 59.616 55.000 0.00 0.00 0.00 4.94
3252 3331 1.264288 GGCCAACAAGTTGACGAAGAG 59.736 52.381 10.54 0.00 42.93 2.85
3306 3385 8.207545 AGGAAGATCAAGAAGACCACATATTAC 58.792 37.037 0.00 0.00 0.00 1.89
3315 3394 5.455056 AGACCACATATTACGGAGATGAC 57.545 43.478 3.19 0.00 0.00 3.06
3683 3762 1.863454 GCACTCGGATATGTGAGCTTG 59.137 52.381 0.00 0.00 36.38 4.01
3795 3874 3.465753 TCGAACGCGAAATTCCGG 58.534 55.556 15.93 0.00 44.78 5.14
3801 3880 1.350665 CGCGAAATTCCGGTTAGGC 59.649 57.895 0.00 0.00 40.77 3.93
3805 3884 1.296727 GAAATTCCGGTTAGGCCTCG 58.703 55.000 9.68 7.02 40.77 4.63
3856 3935 1.721926 GTCTTTCGCTTGAGAGAACCG 59.278 52.381 0.00 0.00 34.91 4.44
3938 4019 6.907212 GCCATTATATTGCGATGTTATGCTAC 59.093 38.462 4.59 0.00 0.00 3.58
3979 4060 1.410153 AGTTTTGTTTGCAGGGCTGAG 59.590 47.619 0.00 0.00 0.00 3.35
3996 4077 3.368571 GGTTGAGCACAGCCCTGC 61.369 66.667 5.71 0.00 40.71 4.85
4016 4097 2.683968 CTGCATTGCTGTTTTGCATCT 58.316 42.857 10.49 0.00 44.65 2.90
4024 4105 3.248266 GCTGTTTTGCATCTTGTGATCC 58.752 45.455 0.00 0.00 0.00 3.36
4026 4107 4.482386 CTGTTTTGCATCTTGTGATCCTG 58.518 43.478 0.00 0.00 0.00 3.86
4031 4112 1.753141 GCATCTTGTGATCCTGGGCAT 60.753 52.381 0.00 0.00 0.00 4.40
4034 4115 1.108776 CTTGTGATCCTGGGCATTGG 58.891 55.000 0.00 0.00 0.00 3.16
4064 4145 5.514274 TTTCTAGGCTGGAACAAAGTTTG 57.486 39.130 13.28 14.13 38.70 2.93
4074 4155 6.183360 GCTGGAACAAAGTTTGGTTTAGTTTG 60.183 38.462 19.45 0.00 38.70 2.93
4081 4162 8.148999 ACAAAGTTTGGTTTAGTTTGGTTGTTA 58.851 29.630 19.45 0.00 39.24 2.41
4101 4182 5.049198 TGTTAGATTTGCAAGAGAAGTGCTG 60.049 40.000 0.00 0.00 42.69 4.41
4102 4183 2.228343 AGATTTGCAAGAGAAGTGCTGC 59.772 45.455 0.00 0.00 42.69 5.25
4103 4184 1.683943 TTTGCAAGAGAAGTGCTGCT 58.316 45.000 0.00 0.00 42.69 4.24
4104 4185 1.233019 TTGCAAGAGAAGTGCTGCTC 58.767 50.000 0.00 0.00 42.69 4.26
4105 4186 0.395686 TGCAAGAGAAGTGCTGCTCT 59.604 50.000 3.90 3.90 43.00 4.09
4107 4188 1.338011 GCAAGAGAAGTGCTGCTCTCT 60.338 52.381 9.96 12.57 40.43 3.10
4108 4189 2.094286 GCAAGAGAAGTGCTGCTCTCTA 60.094 50.000 17.10 0.00 40.43 2.43
4112 4301 1.204467 AGAAGTGCTGCTCTCTAGTGC 59.796 52.381 4.52 0.00 35.32 4.40
4191 4380 9.871238 GTTGTTGGATTTGATAGAGAAGTAGTA 57.129 33.333 0.00 0.00 0.00 1.82
4193 4382 9.256228 TGTTGGATTTGATAGAGAAGTAGTAGT 57.744 33.333 0.00 0.00 0.00 2.73
4204 4393 5.727766 AGAGAAGTAGTAGTCTCTACCCAGT 59.272 44.000 10.37 0.00 46.94 4.00
4207 4396 8.104838 AGAAGTAGTAGTCTCTACCCAGTATT 57.895 38.462 3.69 0.00 40.56 1.89
4208 4397 7.994334 AGAAGTAGTAGTCTCTACCCAGTATTG 59.006 40.741 3.69 0.00 40.56 1.90
4209 4398 7.210618 AGTAGTAGTCTCTACCCAGTATTGT 57.789 40.000 3.69 0.00 40.56 2.71
4211 4400 7.774625 AGTAGTAGTCTCTACCCAGTATTGTTC 59.225 40.741 3.69 0.00 40.56 3.18
4212 4401 5.892686 AGTAGTCTCTACCCAGTATTGTTCC 59.107 44.000 3.69 0.00 0.00 3.62
4213 4402 4.031611 AGTCTCTACCCAGTATTGTTCCC 58.968 47.826 0.00 0.00 0.00 3.97
4214 4403 4.031611 GTCTCTACCCAGTATTGTTCCCT 58.968 47.826 0.00 0.00 0.00 4.20
4226 4687 3.517296 TTGTTCCCTAACCTGCAATCA 57.483 42.857 0.00 0.00 34.49 2.57
4227 4688 3.071874 TGTTCCCTAACCTGCAATCAG 57.928 47.619 0.00 0.00 40.02 2.90
4232 4698 2.359900 CCTAACCTGCAATCAGTCCAC 58.640 52.381 0.00 0.00 38.66 4.02
4304 4770 2.342910 GAGTTGTGGCAGCAAATCTG 57.657 50.000 17.03 0.00 45.62 2.90
4391 4858 1.029681 CCATCGGATGTACGGACTGA 58.970 55.000 16.29 0.00 0.00 3.41
4392 4859 1.269102 CCATCGGATGTACGGACTGAC 60.269 57.143 16.29 0.00 0.00 3.51
4393 4860 1.676529 CATCGGATGTACGGACTGACT 59.323 52.381 9.85 0.00 0.00 3.41
4420 4926 1.963515 GAAACAATCCACAGCAAGGGT 59.036 47.619 0.00 0.00 0.00 4.34
4434 4940 2.357154 GCAAGGGTCTCTCTCTCTCTCT 60.357 54.545 0.00 0.00 0.00 3.10
4435 4941 3.545703 CAAGGGTCTCTCTCTCTCTCTC 58.454 54.545 0.00 0.00 0.00 3.20
4442 4948 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
4443 4949 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
4444 4950 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4445 4951 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4446 4952 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4447 4953 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4448 4954 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4449 4955 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4450 4956 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4451 4957 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4452 4958 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4453 4959 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4462 4968 8.152898 TCTCTCTCTCTCTCTCTCATAATTCAG 58.847 40.741 0.00 0.00 0.00 3.02
4463 4969 7.805163 TCTCTCTCTCTCTCTCATAATTCAGT 58.195 38.462 0.00 0.00 0.00 3.41
4573 5079 1.276705 GTTTCCTCCTCACTCACTCCC 59.723 57.143 0.00 0.00 0.00 4.30
4574 5080 0.787084 TTCCTCCTCACTCACTCCCT 59.213 55.000 0.00 0.00 0.00 4.20
4575 5081 0.333312 TCCTCCTCACTCACTCCCTC 59.667 60.000 0.00 0.00 0.00 4.30
4576 5082 0.686112 CCTCCTCACTCACTCCCTCC 60.686 65.000 0.00 0.00 0.00 4.30
4598 5104 2.158460 ACAAGTGAAGGGAAGGAAAGGG 60.158 50.000 0.00 0.00 0.00 3.95
4638 5144 4.142038 TCCTCTTGCATCATCATTCATGG 58.858 43.478 0.00 0.00 32.64 3.66
4642 5148 5.137551 TCTTGCATCATCATTCATGGTCAT 58.862 37.500 0.00 0.00 32.64 3.06
4651 5157 2.353357 TTCATGGTCATCTCATGGGC 57.647 50.000 0.00 0.00 41.51 5.36
4667 5174 0.962855 GGGCCCTTTCTCTCTTGTGC 60.963 60.000 17.04 0.00 0.00 4.57
4677 5184 3.635268 CTCTTGTGCTGAGGCCCCC 62.635 68.421 0.00 0.00 37.74 5.40
4679 5186 3.506743 TTGTGCTGAGGCCCCCAA 61.507 61.111 0.00 0.00 37.74 4.12
4721 5243 1.598701 GCCCAAGCTCACATTCCACC 61.599 60.000 0.00 0.00 35.50 4.61
4722 5244 0.251297 CCCAAGCTCACATTCCACCA 60.251 55.000 0.00 0.00 0.00 4.17
4723 5245 1.617804 CCCAAGCTCACATTCCACCAT 60.618 52.381 0.00 0.00 0.00 3.55
4724 5246 2.173519 CCAAGCTCACATTCCACCATT 58.826 47.619 0.00 0.00 0.00 3.16
4731 5253 4.201990 GCTCACATTCCACCATTCATTCTC 60.202 45.833 0.00 0.00 0.00 2.87
4749 5271 3.679389 TCTCCCTCTCATGCAAAGTTTC 58.321 45.455 0.00 0.00 0.00 2.78
4754 5276 5.010012 TCCCTCTCATGCAAAGTTTCTTTTC 59.990 40.000 0.00 0.00 0.00 2.29
4755 5277 5.010415 CCCTCTCATGCAAAGTTTCTTTTCT 59.990 40.000 0.00 0.00 0.00 2.52
4756 5278 6.148264 CCTCTCATGCAAAGTTTCTTTTCTC 58.852 40.000 0.00 0.00 0.00 2.87
4757 5279 6.016443 CCTCTCATGCAAAGTTTCTTTTCTCT 60.016 38.462 0.00 0.00 0.00 3.10
4758 5280 6.963796 TCTCATGCAAAGTTTCTTTTCTCTC 58.036 36.000 0.00 0.00 0.00 3.20
4763 5285 8.562892 CATGCAAAGTTTCTTTTCTCTCTCTTA 58.437 33.333 0.00 0.00 0.00 2.10
4777 5299 6.017192 TCTCTCTCTTACTTCTTTGGCCTTA 58.983 40.000 3.32 0.00 0.00 2.69
4779 5301 5.542635 TCTCTCTTACTTCTTTGGCCTTACA 59.457 40.000 3.32 0.00 0.00 2.41
4781 5303 6.407202 TCTCTTACTTCTTTGGCCTTACATC 58.593 40.000 3.32 0.00 0.00 3.06
4784 5306 4.388577 ACTTCTTTGGCCTTACATCCTT 57.611 40.909 3.32 0.00 0.00 3.36
4785 5307 4.740902 ACTTCTTTGGCCTTACATCCTTT 58.259 39.130 3.32 0.00 0.00 3.11
4786 5308 4.524328 ACTTCTTTGGCCTTACATCCTTTG 59.476 41.667 3.32 0.00 0.00 2.77
4787 5309 4.112634 TCTTTGGCCTTACATCCTTTGT 57.887 40.909 3.32 0.00 42.62 2.83
4788 5310 3.826157 TCTTTGGCCTTACATCCTTTGTG 59.174 43.478 3.32 0.00 39.48 3.33
4789 5311 2.969821 TGGCCTTACATCCTTTGTGT 57.030 45.000 3.32 0.00 39.48 3.72
4790 5312 2.513753 TGGCCTTACATCCTTTGTGTG 58.486 47.619 3.32 0.00 39.48 3.82
4801 5323 1.888512 CCTTTGTGTGGCAGCAGTTAT 59.111 47.619 0.00 0.00 0.00 1.89
4804 5326 4.379813 CCTTTGTGTGGCAGCAGTTATTAG 60.380 45.833 0.00 0.00 0.00 1.73
4815 5337 7.558807 TGGCAGCAGTTATTAGTAGTAACTAGA 59.441 37.037 15.42 0.00 39.65 2.43
4849 5372 3.159213 TGGATTTTGTGCTGATCCAGT 57.841 42.857 0.38 0.00 43.20 4.00
4851 5374 4.661222 TGGATTTTGTGCTGATCCAGTAA 58.339 39.130 0.38 0.00 43.20 2.24
4852 5375 4.458989 TGGATTTTGTGCTGATCCAGTAAC 59.541 41.667 0.38 0.00 43.20 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.775385 TGTATCTGCATGGTCCGAGA 58.225 50.000 0.00 0.00 0.00 4.04
41 42 3.692576 GCTCTTGCTTTGTATCTGCATG 58.307 45.455 0.00 0.00 36.55 4.06
43 44 1.733912 CGCTCTTGCTTTGTATCTGCA 59.266 47.619 0.00 0.00 36.97 4.41
46 47 2.419297 CCTCCGCTCTTGCTTTGTATCT 60.419 50.000 0.00 0.00 36.97 1.98
51 52 1.003355 TCCCTCCGCTCTTGCTTTG 60.003 57.895 0.00 0.00 36.97 2.77
60 61 3.707640 CTCTCTCCGTCCCTCCGCT 62.708 68.421 0.00 0.00 0.00 5.52
75 76 1.216710 CGGAGCGCCTCTTTTCTCT 59.783 57.895 2.29 0.00 0.00 3.10
104 105 3.294493 CAACCGCAACCCCCACAG 61.294 66.667 0.00 0.00 0.00 3.66
150 151 2.265904 GGGGAAGGTTTGCGGACAC 61.266 63.158 0.00 0.00 0.00 3.67
151 152 2.114411 GGGGAAGGTTTGCGGACA 59.886 61.111 0.00 0.00 0.00 4.02
154 155 0.611896 AATCTGGGGAAGGTTTGCGG 60.612 55.000 0.00 0.00 0.00 5.69
155 156 1.256812 AAATCTGGGGAAGGTTTGCG 58.743 50.000 0.00 0.00 37.84 4.85
159 160 2.110721 AGAAGCAAATCTGGGGAAGGTT 59.889 45.455 0.00 0.00 0.00 3.50
195 196 1.545614 CGACCAGTCCGTGTGTTTCG 61.546 60.000 0.00 0.00 0.00 3.46
203 204 3.048602 CTTCACCGACCAGTCCGT 58.951 61.111 0.00 0.00 0.00 4.69
216 218 1.136000 CGTCATGCATGAAACGCTTCA 60.136 47.619 30.24 3.33 45.53 3.02
245 248 0.881600 AACGCCCCGTACACTTTGTC 60.882 55.000 0.00 0.00 39.99 3.18
336 339 9.927668 TCTTCATGCGATAAGATAATGACATTA 57.072 29.630 10.26 10.26 0.00 1.90
351 354 5.220662 CGGTTTTGTATCTTCTTCATGCGAT 60.221 40.000 0.00 0.00 0.00 4.58
355 358 5.088739 GTGCGGTTTTGTATCTTCTTCATG 58.911 41.667 0.00 0.00 0.00 3.07
359 362 3.185797 GTCGTGCGGTTTTGTATCTTCTT 59.814 43.478 0.00 0.00 0.00 2.52
360 363 2.735134 GTCGTGCGGTTTTGTATCTTCT 59.265 45.455 0.00 0.00 0.00 2.85
361 364 2.477375 TGTCGTGCGGTTTTGTATCTTC 59.523 45.455 0.00 0.00 0.00 2.87
362 365 2.485903 TGTCGTGCGGTTTTGTATCTT 58.514 42.857 0.00 0.00 0.00 2.40
480 483 9.265901 CACACATAAAATTTGTTTGGGATACAA 57.734 29.630 0.00 0.00 37.28 2.41
481 484 8.642432 TCACACATAAAATTTGTTTGGGATACA 58.358 29.630 0.00 0.00 39.74 2.29
482 485 9.482627 TTCACACATAAAATTTGTTTGGGATAC 57.517 29.630 0.00 0.00 0.00 2.24
484 487 9.571816 AATTCACACATAAAATTTGTTTGGGAT 57.428 25.926 0.00 0.00 0.00 3.85
485 488 8.834465 CAATTCACACATAAAATTTGTTTGGGA 58.166 29.630 0.00 0.00 0.00 4.37
486 489 7.590689 GCAATTCACACATAAAATTTGTTTGGG 59.409 33.333 0.00 0.00 0.00 4.12
487 490 8.127327 TGCAATTCACACATAAAATTTGTTTGG 58.873 29.630 0.00 0.00 0.00 3.28
488 491 9.666626 ATGCAATTCACACATAAAATTTGTTTG 57.333 25.926 0.00 0.00 0.00 2.93
489 492 9.881529 GATGCAATTCACACATAAAATTTGTTT 57.118 25.926 0.00 0.00 0.00 2.83
490 493 8.222433 CGATGCAATTCACACATAAAATTTGTT 58.778 29.630 0.00 0.00 0.00 2.83
491 494 7.598118 TCGATGCAATTCACACATAAAATTTGT 59.402 29.630 0.00 0.00 0.00 2.83
492 495 7.951287 TCGATGCAATTCACACATAAAATTTG 58.049 30.769 0.00 0.00 0.00 2.32
493 496 8.531622 TTCGATGCAATTCACACATAAAATTT 57.468 26.923 0.00 0.00 0.00 1.82
494 497 8.531622 TTTCGATGCAATTCACACATAAAATT 57.468 26.923 0.00 0.00 0.00 1.82
495 498 8.531622 TTTTCGATGCAATTCACACATAAAAT 57.468 26.923 0.00 0.00 0.00 1.82
496 499 7.936950 TTTTCGATGCAATTCACACATAAAA 57.063 28.000 0.00 0.00 0.00 1.52
497 500 7.095857 GGTTTTTCGATGCAATTCACACATAAA 60.096 33.333 0.00 0.00 0.00 1.40
498 501 6.364706 GGTTTTTCGATGCAATTCACACATAA 59.635 34.615 0.00 0.00 0.00 1.90
499 502 5.861251 GGTTTTTCGATGCAATTCACACATA 59.139 36.000 0.00 0.00 0.00 2.29
500 503 4.685628 GGTTTTTCGATGCAATTCACACAT 59.314 37.500 0.00 0.00 0.00 3.21
501 504 4.047822 GGTTTTTCGATGCAATTCACACA 58.952 39.130 0.00 0.00 0.00 3.72
502 505 4.047822 TGGTTTTTCGATGCAATTCACAC 58.952 39.130 0.00 0.00 0.00 3.82
503 506 4.313277 TGGTTTTTCGATGCAATTCACA 57.687 36.364 0.00 0.00 0.00 3.58
504 507 5.844301 AATGGTTTTTCGATGCAATTCAC 57.156 34.783 0.00 0.00 0.00 3.18
505 508 6.918626 TCTAATGGTTTTTCGATGCAATTCA 58.081 32.000 0.00 0.00 0.00 2.57
506 509 7.834529 CATCTAATGGTTTTTCGATGCAATTC 58.165 34.615 0.00 0.00 0.00 2.17
507 510 7.760131 CATCTAATGGTTTTTCGATGCAATT 57.240 32.000 0.00 0.00 0.00 2.32
512 515 7.043192 GGAAATGCATCTAATGGTTTTTCGATG 60.043 37.037 0.00 0.00 33.32 3.84
513 516 6.980397 GGAAATGCATCTAATGGTTTTTCGAT 59.020 34.615 0.00 0.00 0.00 3.59
514 517 6.071672 TGGAAATGCATCTAATGGTTTTTCGA 60.072 34.615 0.00 0.00 0.00 3.71
515 518 6.098679 TGGAAATGCATCTAATGGTTTTTCG 58.901 36.000 0.00 0.00 0.00 3.46
516 519 9.598517 TTATGGAAATGCATCTAATGGTTTTTC 57.401 29.630 0.00 0.00 0.00 2.29
517 520 9.382275 GTTATGGAAATGCATCTAATGGTTTTT 57.618 29.630 0.00 0.00 0.00 1.94
518 521 7.986889 GGTTATGGAAATGCATCTAATGGTTTT 59.013 33.333 0.00 0.00 0.00 2.43
519 522 7.125507 TGGTTATGGAAATGCATCTAATGGTTT 59.874 33.333 0.00 0.00 0.00 3.27
520 523 6.610830 TGGTTATGGAAATGCATCTAATGGTT 59.389 34.615 0.00 0.00 0.00 3.67
521 524 6.135454 TGGTTATGGAAATGCATCTAATGGT 58.865 36.000 0.00 0.00 0.00 3.55
522 525 6.653526 TGGTTATGGAAATGCATCTAATGG 57.346 37.500 0.00 0.00 0.00 3.16
523 526 7.490840 TGTTGGTTATGGAAATGCATCTAATG 58.509 34.615 0.00 0.00 0.00 1.90
524 527 7.658525 TGTTGGTTATGGAAATGCATCTAAT 57.341 32.000 0.00 0.00 0.00 1.73
525 528 7.473735 TTGTTGGTTATGGAAATGCATCTAA 57.526 32.000 0.00 0.00 0.00 2.10
537 540 5.639082 GGCAAAGAGAATTTGTTGGTTATGG 59.361 40.000 2.65 0.00 0.00 2.74
543 546 5.230182 GGTTAGGCAAAGAGAATTTGTTGG 58.770 41.667 2.65 0.00 0.00 3.77
567 570 0.033109 GGGGGAAAGACTTCATGGGG 60.033 60.000 0.00 0.00 32.75 4.96
576 579 4.645136 GGTTTATCTTGATGGGGGAAAGAC 59.355 45.833 0.00 0.00 33.01 3.01
582 586 3.053693 TGTGAGGTTTATCTTGATGGGGG 60.054 47.826 0.00 0.00 0.00 5.40
584 588 5.450965 GCATTGTGAGGTTTATCTTGATGGG 60.451 44.000 0.00 0.00 0.00 4.00
587 591 5.263599 TGGCATTGTGAGGTTTATCTTGAT 58.736 37.500 0.00 0.00 0.00 2.57
605 609 3.248888 TGAGGAGATGAGATGATGGCAT 58.751 45.455 0.00 0.00 37.47 4.40
607 611 3.008157 ACATGAGGAGATGAGATGATGGC 59.992 47.826 0.00 0.00 0.00 4.40
608 612 4.563786 CCACATGAGGAGATGAGATGATGG 60.564 50.000 2.50 0.00 0.00 3.51
617 621 5.494390 TTATCCATCCACATGAGGAGATG 57.506 43.478 17.24 11.21 41.90 2.90
622 626 3.490348 GGGTTTATCCATCCACATGAGG 58.510 50.000 2.20 2.20 38.11 3.86
699 709 5.872617 AGGTTCGAAAAAGGGAAAGTTTTTG 59.127 36.000 0.00 0.00 37.25 2.44
708 718 3.622630 TCAACAAGGTTCGAAAAAGGGA 58.377 40.909 0.00 0.00 0.00 4.20
717 727 2.350772 GCAATGGACTCAACAAGGTTCG 60.351 50.000 0.00 0.00 0.00 3.95
738 770 5.483811 AGGTTTTAGGGTTTGTGTTGTTTG 58.516 37.500 0.00 0.00 0.00 2.93
744 776 3.562182 CCTGAGGTTTTAGGGTTTGTGT 58.438 45.455 0.00 0.00 0.00 3.72
777 809 0.326264 TTGCCCTCTTTGCCTCTCTC 59.674 55.000 0.00 0.00 0.00 3.20
778 810 0.037447 GTTGCCCTCTTTGCCTCTCT 59.963 55.000 0.00 0.00 0.00 3.10
779 811 0.037447 AGTTGCCCTCTTTGCCTCTC 59.963 55.000 0.00 0.00 0.00 3.20
814 846 1.268625 GTTTTTACCGTGCTTGGAGGG 59.731 52.381 1.60 0.00 0.00 4.30
845 877 0.984432 GGGGTTACGATTGAGGGGGA 60.984 60.000 0.00 0.00 0.00 4.81
877 919 4.586306 TTATGGGGAAGAGGAAGGAAAC 57.414 45.455 0.00 0.00 0.00 2.78
913 955 3.243643 CCGCAAGAGCTTTCTTTTTGTTG 59.756 43.478 0.00 0.00 43.02 3.33
917 959 4.550422 GATTCCGCAAGAGCTTTCTTTTT 58.450 39.130 0.00 0.00 43.02 1.94
946 988 3.707189 GGAGGGGAGGGAGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
977 1029 1.454847 CGGAGGAGGAGTGGAGAGG 60.455 68.421 0.00 0.00 0.00 3.69
1129 1184 2.269241 GAACAGGCGGGGAAGAGG 59.731 66.667 0.00 0.00 0.00 3.69
1141 1196 1.953686 ACCAACAATCAACCGGAACAG 59.046 47.619 9.46 0.00 0.00 3.16
1245 1310 3.738982 CATTCAAAAACCAAGAACCCCC 58.261 45.455 0.00 0.00 0.00 5.40
1345 1410 3.151554 ACCCCCGTAATTCTTGAACAAC 58.848 45.455 0.00 0.00 0.00 3.32
1346 1411 3.512219 ACCCCCGTAATTCTTGAACAA 57.488 42.857 0.00 0.00 0.00 2.83
1360 1425 1.001764 GGACCAACCTAAACCCCCG 60.002 63.158 0.00 0.00 35.41 5.73
1377 1442 1.335872 GGTTCAAGGAATTGCACACGG 60.336 52.381 0.00 0.00 0.00 4.94
1454 1519 1.457009 TTTTCCCCCTTTGCGTTCCG 61.457 55.000 0.00 0.00 0.00 4.30
1460 1525 4.415881 TTTCTTCTTTTTCCCCCTTTGC 57.584 40.909 0.00 0.00 0.00 3.68
1467 1532 2.930887 GCCGCCATTTCTTCTTTTTCCC 60.931 50.000 0.00 0.00 0.00 3.97
1468 1533 2.029020 AGCCGCCATTTCTTCTTTTTCC 60.029 45.455 0.00 0.00 0.00 3.13
1469 1534 3.057245 AGAGCCGCCATTTCTTCTTTTTC 60.057 43.478 0.00 0.00 0.00 2.29
1470 1535 2.893489 AGAGCCGCCATTTCTTCTTTTT 59.107 40.909 0.00 0.00 0.00 1.94
1471 1536 2.229784 CAGAGCCGCCATTTCTTCTTTT 59.770 45.455 0.00 0.00 0.00 2.27
1475 1540 1.131315 GAACAGAGCCGCCATTTCTTC 59.869 52.381 0.00 0.00 0.00 2.87
1498 1563 6.259387 AGGACCGAAACAGTAAAAAGTAACAG 59.741 38.462 0.00 0.00 0.00 3.16
1503 1568 5.032327 AGAGGACCGAAACAGTAAAAAGT 57.968 39.130 0.00 0.00 0.00 2.66
1505 1570 4.383173 GGAGAGGACCGAAACAGTAAAAA 58.617 43.478 0.00 0.00 0.00 1.94
1570 1635 5.278463 CCTCCCAACCAAAGCAATATATTCG 60.278 44.000 0.00 0.00 0.00 3.34
1573 1638 4.169856 TCCCTCCCAACCAAAGCAATATAT 59.830 41.667 0.00 0.00 0.00 0.86
1574 1639 3.529734 TCCCTCCCAACCAAAGCAATATA 59.470 43.478 0.00 0.00 0.00 0.86
1589 1654 2.971901 TTGAAAACCTCTTCCCTCCC 57.028 50.000 0.00 0.00 0.00 4.30
1693 1758 2.880443 ACCTGACACGAACCCTAGTAA 58.120 47.619 0.00 0.00 0.00 2.24
1705 1770 2.755650 AGAACGTGATGAACCTGACAC 58.244 47.619 0.00 0.00 0.00 3.67
1751 1816 5.353123 TCACAGCGAAAGGGAAACATAATAC 59.647 40.000 0.00 0.00 0.00 1.89
1752 1817 5.492895 TCACAGCGAAAGGGAAACATAATA 58.507 37.500 0.00 0.00 0.00 0.98
1753 1818 4.331968 TCACAGCGAAAGGGAAACATAAT 58.668 39.130 0.00 0.00 0.00 1.28
1770 1835 2.029020 TCTTCCTTCCGTGACATCACAG 60.029 50.000 12.32 0.89 46.75 3.66
1787 1852 2.030805 ACACGCATTGCTTTTCCTCTTC 60.031 45.455 7.12 0.00 0.00 2.87
1829 1905 0.105964 CAGGAGGGAACGAACACACA 59.894 55.000 0.00 0.00 0.00 3.72
1830 1906 0.106149 ACAGGAGGGAACGAACACAC 59.894 55.000 0.00 0.00 0.00 3.82
1832 1908 0.391597 TGACAGGAGGGAACGAACAC 59.608 55.000 0.00 0.00 0.00 3.32
1864 1940 1.577468 TATTAACAGTGGATGCGCCG 58.423 50.000 4.18 0.00 40.66 6.46
1916 1992 6.442952 ACTACAATATCTCTGTCGCAATCTC 58.557 40.000 0.00 0.00 0.00 2.75
1923 1999 7.952101 CACAAAACAACTACAATATCTCTGTCG 59.048 37.037 0.00 0.00 0.00 4.35
1942 2018 4.216687 TCCACCCAAATCGATACACAAAAC 59.783 41.667 0.00 0.00 0.00 2.43
1949 2025 5.638596 AAGTTTTCCACCCAAATCGATAC 57.361 39.130 0.00 0.00 0.00 2.24
1950 2026 6.376018 CCTAAAGTTTTCCACCCAAATCGATA 59.624 38.462 0.00 0.00 0.00 2.92
1951 2027 5.185056 CCTAAAGTTTTCCACCCAAATCGAT 59.815 40.000 0.00 0.00 0.00 3.59
1952 2028 4.521256 CCTAAAGTTTTCCACCCAAATCGA 59.479 41.667 0.00 0.00 0.00 3.59
1953 2029 4.521256 TCCTAAAGTTTTCCACCCAAATCG 59.479 41.667 0.00 0.00 0.00 3.34
1954 2030 5.538813 AGTCCTAAAGTTTTCCACCCAAATC 59.461 40.000 0.00 0.00 0.00 2.17
2009 2086 3.573967 TGAAGAACCCTTGAGGCAAAATC 59.426 43.478 0.00 0.00 40.58 2.17
2053 2130 4.340381 GGATGGATGTTTCCTTGAATCCTG 59.660 45.833 0.00 0.00 43.07 3.86
2108 2185 7.719633 TCAAGGCTAAATATGAGGAACATAACC 59.280 37.037 0.00 0.00 43.47 2.85
2130 2207 3.099267 AGTCCACGAACTTGAGTCAAG 57.901 47.619 27.66 27.66 45.85 3.02
2137 2214 3.736252 CAGTTCACTAGTCCACGAACTTG 59.264 47.826 18.72 12.70 44.23 3.16
2152 2229 5.772521 ACAGGATGCAATTAAACAGTTCAC 58.227 37.500 0.00 0.00 42.53 3.18
2203 2280 4.592485 AATGCAATTAAACACCGTGGAA 57.408 36.364 3.03 0.00 32.46 3.53
2225 2302 9.195411 GAAAATAAAATTCATGCTTCAGTCACA 57.805 29.630 0.00 0.00 0.00 3.58
2226 2303 8.368126 CGAAAATAAAATTCATGCTTCAGTCAC 58.632 33.333 0.00 0.00 0.00 3.67
2227 2304 8.081633 ACGAAAATAAAATTCATGCTTCAGTCA 58.918 29.630 0.00 0.00 0.00 3.41
2228 2305 8.452989 ACGAAAATAAAATTCATGCTTCAGTC 57.547 30.769 0.00 0.00 0.00 3.51
2229 2306 8.702438 CAACGAAAATAAAATTCATGCTTCAGT 58.298 29.630 0.00 0.00 0.00 3.41
2230 2307 7.685304 GCAACGAAAATAAAATTCATGCTTCAG 59.315 33.333 0.00 0.00 36.82 3.02
2231 2308 7.170489 TGCAACGAAAATAAAATTCATGCTTCA 59.830 29.630 12.30 0.00 38.79 3.02
2232 2309 7.508965 TGCAACGAAAATAAAATTCATGCTTC 58.491 30.769 12.30 0.00 38.79 3.86
2247 2324 7.974501 TGGAAAATTAAGTTACTGCAACGAAAA 59.025 29.630 0.00 0.00 42.35 2.29
2255 2332 9.087424 GATTCCAATGGAAAATTAAGTTACTGC 57.913 33.333 19.57 0.00 45.41 4.40
2330 2407 5.698741 AGTCCACACCATCAATCAATAGA 57.301 39.130 0.00 0.00 0.00 1.98
2376 2453 3.071602 ACAAACAGTCCTACAGTCAGCAT 59.928 43.478 0.00 0.00 0.00 3.79
2450 2528 3.057946 CCCAAACAAAGAGTAGCAGAAGC 60.058 47.826 0.00 0.00 42.56 3.86
2456 2534 3.219281 TGGTTCCCAAACAAAGAGTAGC 58.781 45.455 0.00 0.00 37.10 3.58
2502 2580 4.219288 GGAATGCATAGGGAAGCCTTAATG 59.781 45.833 0.00 0.00 0.00 1.90
2560 2638 4.729868 AGGTCCTGTTCTATGTTTTTGCT 58.270 39.130 0.00 0.00 0.00 3.91
2666 2744 9.289782 GGCCAAACTGATTGTCTAAGAATATAT 57.710 33.333 0.00 0.00 37.32 0.86
2667 2745 8.271458 TGGCCAAACTGATTGTCTAAGAATATA 58.729 33.333 0.61 0.00 37.32 0.86
2668 2746 7.118723 TGGCCAAACTGATTGTCTAAGAATAT 58.881 34.615 0.61 0.00 37.32 1.28
2669 2747 6.480763 TGGCCAAACTGATTGTCTAAGAATA 58.519 36.000 0.61 0.00 37.32 1.75
2723 2801 4.276678 TGTCTTCACTTTCCTGCAAATCAG 59.723 41.667 0.00 0.00 42.49 2.90
2777 2856 0.984995 AGGGTTAGTCAAGCAGTCCC 59.015 55.000 0.00 0.00 33.68 4.46
2838 2917 2.019984 GATGAAGGATGTGGCAGGTTC 58.980 52.381 0.00 0.00 0.00 3.62
2910 2989 8.615211 TCAACAATCAGGAAATATTCTTCATCG 58.385 33.333 0.00 0.00 0.00 3.84
2943 3022 5.236047 CCAATGCTTCTGATCAAGTAGTAGC 59.764 44.000 0.00 0.65 0.00 3.58
3044 3123 3.328050 AGTGTAGGGCTTATATGCTTCCC 59.672 47.826 10.15 3.91 37.24 3.97
3050 3129 4.060900 CTGCACAGTGTAGGGCTTATATG 58.939 47.826 10.71 0.00 0.00 1.78
3156 3235 1.473258 TGCACAATAATGCCCCTGAC 58.527 50.000 0.00 0.00 45.50 3.51
3252 3331 1.111715 GCCCCCTTCCATGATCTTGC 61.112 60.000 3.07 0.00 0.00 4.01
3306 3385 1.791103 GAGGCTCCTCGTCATCTCCG 61.791 65.000 2.15 0.00 33.06 4.63
3563 3642 0.817634 CACGAAGGTTGGGCTGTTGA 60.818 55.000 0.00 0.00 0.00 3.18
3663 3742 1.863454 CAAGCTCACATATCCGAGTGC 59.137 52.381 0.00 0.00 35.76 4.40
3790 3869 1.914764 AACCGAGGCCTAACCGGAA 60.915 57.895 31.79 0.00 45.58 4.30
3795 3874 2.074576 GAGTTTCAACCGAGGCCTAAC 58.925 52.381 4.42 4.43 0.00 2.34
3801 3880 2.256117 ACAAGGAGTTTCAACCGAGG 57.744 50.000 0.00 0.00 0.00 4.63
3805 3884 4.390264 AGAGCTAACAAGGAGTTTCAACC 58.610 43.478 0.00 0.00 41.64 3.77
3856 3935 4.674475 GACGAATCCAGGACTAGAGAAAC 58.326 47.826 0.00 0.00 0.00 2.78
3864 3943 0.526662 GTGACGACGAATCCAGGACT 59.473 55.000 0.00 0.00 0.00 3.85
3938 4019 1.244816 GGAAAGGGGACAGGAAAACG 58.755 55.000 0.00 0.00 0.00 3.60
3979 4060 3.368571 GCAGGGCTGTGCTCAACC 61.369 66.667 0.00 0.00 40.54 3.77
4004 4085 4.482386 CAGGATCACAAGATGCAAAACAG 58.518 43.478 0.00 0.00 44.25 3.16
4016 4097 0.409092 ACCAATGCCCAGGATCACAA 59.591 50.000 0.00 0.00 0.00 3.33
4044 4125 3.117663 ACCAAACTTTGTTCCAGCCTAGA 60.118 43.478 0.00 0.00 0.00 2.43
4058 4139 8.124808 TCTAACAACCAAACTAAACCAAACTT 57.875 30.769 0.00 0.00 0.00 2.66
4064 4145 6.981559 TGCAAATCTAACAACCAAACTAAACC 59.018 34.615 0.00 0.00 0.00 3.27
4074 4155 6.145535 CACTTCTCTTGCAAATCTAACAACC 58.854 40.000 0.00 0.00 0.00 3.77
4081 4162 2.228343 GCAGCACTTCTCTTGCAAATCT 59.772 45.455 0.00 0.00 42.83 2.40
4101 4182 1.441311 GCCAGGAGCACTAGAGAGC 59.559 63.158 0.00 0.00 42.97 4.09
4112 4301 1.542492 AAAGTCAGCAATGCCAGGAG 58.458 50.000 0.00 0.00 0.00 3.69
4146 4335 7.363094 CCAACAACCAAACTAAACCAAACTCTA 60.363 37.037 0.00 0.00 0.00 2.43
4154 4343 6.342111 TCAAATCCAACAACCAAACTAAACC 58.658 36.000 0.00 0.00 0.00 3.27
4191 4380 4.031611 GGGAACAATACTGGGTAGAGACT 58.968 47.826 0.00 0.00 0.00 3.24
4192 4381 4.031611 AGGGAACAATACTGGGTAGAGAC 58.968 47.826 0.00 0.00 0.00 3.36
4193 4382 4.348020 AGGGAACAATACTGGGTAGAGA 57.652 45.455 0.00 0.00 0.00 3.10
4204 4393 5.186256 TGATTGCAGGTTAGGGAACAATA 57.814 39.130 0.00 0.00 37.29 1.90
4207 4396 2.375174 ACTGATTGCAGGTTAGGGAACA 59.625 45.455 0.00 0.00 46.60 3.18
4208 4397 3.010420 GACTGATTGCAGGTTAGGGAAC 58.990 50.000 0.00 0.00 46.60 3.62
4209 4398 2.026262 GGACTGATTGCAGGTTAGGGAA 60.026 50.000 0.00 0.00 46.60 3.97
4211 4400 1.281867 TGGACTGATTGCAGGTTAGGG 59.718 52.381 0.00 0.00 46.60 3.53
4212 4401 2.359900 GTGGACTGATTGCAGGTTAGG 58.640 52.381 0.00 0.00 46.60 2.69
4213 4402 2.026822 AGGTGGACTGATTGCAGGTTAG 60.027 50.000 0.00 0.00 46.60 2.34
4214 4403 1.985159 AGGTGGACTGATTGCAGGTTA 59.015 47.619 0.00 0.00 46.60 2.85
4226 4687 1.700186 GGTTCAGGAAAGAGGTGGACT 59.300 52.381 0.00 0.00 0.00 3.85
4227 4688 1.420138 TGGTTCAGGAAAGAGGTGGAC 59.580 52.381 0.00 0.00 0.00 4.02
4232 4698 2.205022 TGCATGGTTCAGGAAAGAGG 57.795 50.000 0.00 0.00 0.00 3.69
4304 4770 0.038892 CATTGTTGCCAGCAGTGTCC 60.039 55.000 0.00 0.00 0.00 4.02
4325 4791 5.128919 AGCTCAAGAACTGAATCTGTTGTT 58.871 37.500 10.22 9.58 32.17 2.83
4391 4858 3.554934 TGTGGATTGTTTCTTGCAGAGT 58.445 40.909 0.00 0.00 0.00 3.24
4392 4859 3.611057 GCTGTGGATTGTTTCTTGCAGAG 60.611 47.826 0.00 0.00 0.00 3.35
4393 4860 2.294233 GCTGTGGATTGTTTCTTGCAGA 59.706 45.455 0.00 0.00 0.00 4.26
4420 4926 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4434 4940 7.862274 ATTATGAGAGAGAGAGAGAGAGAGA 57.138 40.000 0.00 0.00 0.00 3.10
4435 4941 8.152898 TGAATTATGAGAGAGAGAGAGAGAGAG 58.847 40.741 0.00 0.00 0.00 3.20
4442 4948 7.066887 GTGTCACTGAATTATGAGAGAGAGAGA 59.933 40.741 0.00 0.00 0.00 3.10
4443 4949 7.195646 GTGTCACTGAATTATGAGAGAGAGAG 58.804 42.308 0.00 0.00 0.00 3.20
4444 4950 6.096141 GGTGTCACTGAATTATGAGAGAGAGA 59.904 42.308 2.35 0.00 0.00 3.10
4445 4951 6.096705 AGGTGTCACTGAATTATGAGAGAGAG 59.903 42.308 2.35 0.00 0.00 3.20
4446 4952 5.954752 AGGTGTCACTGAATTATGAGAGAGA 59.045 40.000 2.35 0.00 0.00 3.10
4447 4953 6.219417 AGGTGTCACTGAATTATGAGAGAG 57.781 41.667 2.35 0.00 0.00 3.20
4448 4954 6.611613 AAGGTGTCACTGAATTATGAGAGA 57.388 37.500 2.35 0.00 0.00 3.10
4449 4955 7.173907 ACAAAAGGTGTCACTGAATTATGAGAG 59.826 37.037 2.35 0.00 34.38 3.20
4450 4956 6.998074 ACAAAAGGTGTCACTGAATTATGAGA 59.002 34.615 2.35 0.00 34.38 3.27
4451 4957 7.206981 ACAAAAGGTGTCACTGAATTATGAG 57.793 36.000 2.35 0.00 34.38 2.90
4452 4958 8.862325 ATACAAAAGGTGTCACTGAATTATGA 57.138 30.769 2.35 0.00 41.98 2.15
4453 4959 8.729756 TGATACAAAAGGTGTCACTGAATTATG 58.270 33.333 2.35 0.00 41.95 1.90
4463 4969 5.163353 TGAGTGAGTGATACAAAAGGTGTCA 60.163 40.000 0.00 0.00 44.22 3.58
4573 5079 1.699634 TCCTTCCCTTCACTTGTGGAG 59.300 52.381 2.16 2.16 0.00 3.86
4574 5080 1.814429 TCCTTCCCTTCACTTGTGGA 58.186 50.000 0.64 0.00 0.00 4.02
4575 5081 2.656947 TTCCTTCCCTTCACTTGTGG 57.343 50.000 0.64 0.00 0.00 4.17
4576 5082 2.887152 CCTTTCCTTCCCTTCACTTGTG 59.113 50.000 0.00 0.00 0.00 3.33
4588 5094 3.413327 GTCAAGACCTTCCCTTTCCTTC 58.587 50.000 0.00 0.00 0.00 3.46
4638 5144 1.213926 AGAAAGGGCCCATGAGATGAC 59.786 52.381 27.56 4.40 0.00 3.06
4642 5148 1.207791 GAGAGAAAGGGCCCATGAGA 58.792 55.000 27.56 0.00 0.00 3.27
4651 5157 2.614987 CCTCAGCACAAGAGAGAAAGGG 60.615 54.545 0.00 0.00 35.09 3.95
4667 5174 1.077265 ACACAATTGGGGGCCTCAG 59.923 57.895 13.35 0.00 0.00 3.35
4677 5184 1.259507 GCAACTGCAAGCACACAATTG 59.740 47.619 3.24 3.24 41.59 2.32
4679 5186 3.277652 GCAACTGCAAGCACACAAT 57.722 47.368 0.00 0.00 41.59 2.71
4703 5225 0.251297 TGGTGGAATGTGAGCTTGGG 60.251 55.000 0.00 0.00 0.00 4.12
4704 5226 1.843368 ATGGTGGAATGTGAGCTTGG 58.157 50.000 0.00 0.00 0.00 3.61
4715 5237 3.192944 AGAGGGAGAATGAATGGTGGAA 58.807 45.455 0.00 0.00 0.00 3.53
4721 5243 3.816994 TGCATGAGAGGGAGAATGAATG 58.183 45.455 0.00 0.00 0.00 2.67
4722 5244 4.515028 TTGCATGAGAGGGAGAATGAAT 57.485 40.909 0.00 0.00 0.00 2.57
4723 5245 4.263639 ACTTTGCATGAGAGGGAGAATGAA 60.264 41.667 0.00 0.00 0.00 2.57
4724 5246 3.265221 ACTTTGCATGAGAGGGAGAATGA 59.735 43.478 0.00 0.00 0.00 2.57
4731 5253 4.861102 AAAGAAACTTTGCATGAGAGGG 57.139 40.909 0.00 0.00 0.00 4.30
4749 5271 6.148645 GGCCAAAGAAGTAAGAGAGAGAAAAG 59.851 42.308 0.00 0.00 0.00 2.27
4754 5276 4.817318 AGGCCAAAGAAGTAAGAGAGAG 57.183 45.455 5.01 0.00 0.00 3.20
4755 5277 5.542635 TGTAAGGCCAAAGAAGTAAGAGAGA 59.457 40.000 5.01 0.00 0.00 3.10
4756 5278 5.794894 TGTAAGGCCAAAGAAGTAAGAGAG 58.205 41.667 5.01 0.00 0.00 3.20
4757 5279 5.818678 TGTAAGGCCAAAGAAGTAAGAGA 57.181 39.130 5.01 0.00 0.00 3.10
4758 5280 5.586643 GGATGTAAGGCCAAAGAAGTAAGAG 59.413 44.000 5.01 0.00 0.00 2.85
4763 5285 4.388577 AAGGATGTAAGGCCAAAGAAGT 57.611 40.909 5.01 0.00 0.00 3.01
4777 5299 0.467844 TGCTGCCACACAAAGGATGT 60.468 50.000 0.00 0.00 45.34 3.06
4779 5301 0.178981 ACTGCTGCCACACAAAGGAT 60.179 50.000 0.00 0.00 0.00 3.24
4781 5303 1.317613 TAACTGCTGCCACACAAAGG 58.682 50.000 0.00 0.00 0.00 3.11
4784 5306 3.750371 ACTAATAACTGCTGCCACACAA 58.250 40.909 0.00 0.00 0.00 3.33
4785 5307 3.417069 ACTAATAACTGCTGCCACACA 57.583 42.857 0.00 0.00 0.00 3.72
4786 5308 4.504858 ACTACTAATAACTGCTGCCACAC 58.495 43.478 0.00 0.00 0.00 3.82
4787 5309 4.819105 ACTACTAATAACTGCTGCCACA 57.181 40.909 0.00 0.00 0.00 4.17
4788 5310 6.338937 AGTTACTACTAATAACTGCTGCCAC 58.661 40.000 0.00 0.00 40.55 5.01
4789 5311 6.540438 AGTTACTACTAATAACTGCTGCCA 57.460 37.500 0.00 0.00 40.55 4.92
4790 5312 7.938715 TCTAGTTACTACTAATAACTGCTGCC 58.061 38.462 7.50 0.00 41.77 4.85
4801 5323 8.475639 CCATGGCTTTTCTCTAGTTACTACTAA 58.524 37.037 0.00 0.00 36.46 2.24
4804 5326 6.875076 TCCATGGCTTTTCTCTAGTTACTAC 58.125 40.000 6.96 0.00 0.00 2.73
4895 5428 7.123098 AGCACATGGAATTTATTTCATCAGACA 59.877 33.333 0.00 0.00 33.78 3.41
4896 5429 7.434307 CAGCACATGGAATTTATTTCATCAGAC 59.566 37.037 0.00 0.00 33.78 3.51
4898 5431 6.200286 GCAGCACATGGAATTTATTTCATCAG 59.800 38.462 0.00 0.00 33.78 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.