Multiple sequence alignment - TraesCS5B01G018400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G018400 chr5B 100.000 3047 0 0 1 3047 17951347 17954393 0.000000e+00 5627.0
1 TraesCS5B01G018400 chr5B 90.220 726 58 6 2172 2895 328215978 328215264 0.000000e+00 935.0
2 TraesCS5B01G018400 chr5B 89.391 443 35 8 1 438 17915196 17914761 5.740000e-152 547.0
3 TraesCS5B01G018400 chr5B 90.547 201 17 2 1428 1626 139340505 139340705 6.480000e-67 265.0
4 TraesCS5B01G018400 chr5B 87.363 182 23 0 1440 1621 595288665 595288846 3.080000e-50 209.0
5 TraesCS5B01G018400 chr5B 85.340 191 22 5 1430 1617 8353966 8354153 3.100000e-45 193.0
6 TraesCS5B01G018400 chr5B 91.139 79 6 1 592 669 18132996 18132918 4.150000e-19 106.0
7 TraesCS5B01G018400 chr5B 93.651 63 3 1 573 634 17902620 17902558 3.230000e-15 93.5
8 TraesCS5B01G018400 chr5B 87.931 58 6 1 1371 1428 50347648 50347592 1.960000e-07 67.6
9 TraesCS5B01G018400 chr7B 92.044 729 54 4 2169 2895 70374260 70374986 0.000000e+00 1022.0
10 TraesCS5B01G018400 chr7B 92.481 133 9 1 2916 3047 70423222 70423354 4.010000e-44 189.0
11 TraesCS5B01G018400 chr3A 91.632 729 59 2 2169 2895 554413752 554414480 0.000000e+00 1007.0
12 TraesCS5B01G018400 chr2A 90.574 732 58 8 2169 2895 777540314 777539589 0.000000e+00 959.0
13 TraesCS5B01G018400 chr2A 90.850 153 13 1 2896 3047 777539533 777539381 1.430000e-48 204.0
14 TraesCS5B01G018400 chr1A 89.333 750 49 9 2169 2895 319085535 319084794 0.000000e+00 913.0
15 TraesCS5B01G018400 chr1A 84.395 314 43 4 1023 1336 337704097 337703790 1.370000e-78 303.0
16 TraesCS5B01G018400 chr1A 83.175 315 43 7 1014 1326 337658529 337658223 2.310000e-71 279.0
17 TraesCS5B01G018400 chr1A 92.208 154 10 2 2896 3047 319084739 319084586 1.840000e-52 217.0
18 TraesCS5B01G018400 chr2D 89.807 726 50 11 2173 2895 578644474 578643770 0.000000e+00 909.0
19 TraesCS5B01G018400 chr2D 89.032 155 14 2 2896 3047 578643715 578643561 4.010000e-44 189.0
20 TraesCS5B01G018400 chr2D 92.727 55 4 0 673 727 484910714 484910768 2.520000e-11 80.5
21 TraesCS5B01G018400 chr6D 87.834 748 61 8 2169 2895 4812251 4812989 0.000000e+00 850.0
22 TraesCS5B01G018400 chr6D 90.850 153 13 1 2896 3047 4813044 4813196 1.430000e-48 204.0
23 TraesCS5B01G018400 chr1B 93.631 471 25 2 2426 2895 503882895 503882429 0.000000e+00 699.0
24 TraesCS5B01G018400 chr1B 84.713 314 40 6 1014 1326 349547300 349546994 1.060000e-79 307.0
25 TraesCS5B01G018400 chr1B 90.104 192 18 1 1428 1618 335975046 335974855 6.520000e-62 248.0
26 TraesCS5B01G018400 chr1B 88.718 195 19 2 1428 1621 390879021 390878829 5.080000e-58 235.0
27 TraesCS5B01G018400 chr1B 80.312 320 53 6 1019 1336 349564095 349563784 1.830000e-57 233.0
28 TraesCS5B01G018400 chr1B 94.118 153 8 1 2896 3047 503882373 503882221 6.570000e-57 231.0
29 TraesCS5B01G018400 chr1B 85.417 192 25 3 1437 1628 300580882 300580694 2.400000e-46 196.0
30 TraesCS5B01G018400 chr5A 93.541 449 27 2 909 1356 17628552 17628999 0.000000e+00 667.0
31 TraesCS5B01G018400 chr5A 90.255 431 39 3 1620 2047 17628996 17629426 7.380000e-156 560.0
32 TraesCS5B01G018400 chr5A 91.364 220 17 2 208 425 17674272 17674053 1.780000e-77 300.0
33 TraesCS5B01G018400 chr5A 88.660 97 10 1 573 669 17632307 17632212 1.920000e-22 117.0
34 TraesCS5B01G018400 chr5A 85.882 85 7 2 339 418 17628258 17628342 5.410000e-13 86.1
35 TraesCS5B01G018400 chr5D 87.956 548 59 5 1619 2161 25042658 25043203 9.210000e-180 640.0
36 TraesCS5B01G018400 chr5D 87.679 560 46 11 799 1344 24974944 24974394 5.540000e-177 630.0
37 TraesCS5B01G018400 chr5D 88.534 532 39 16 824 1344 25042129 25042649 2.580000e-175 625.0
38 TraesCS5B01G018400 chr5D 87.476 519 54 6 1 514 25040220 25040732 3.380000e-164 588.0
39 TraesCS5B01G018400 chr5D 89.195 435 37 7 1620 2048 24974380 24973950 4.470000e-148 534.0
40 TraesCS5B01G018400 chr5D 83.726 424 45 4 1634 2054 24943160 24943562 2.220000e-101 379.0
41 TraesCS5B01G018400 chr5D 90.945 254 23 0 1091 1344 24942884 24943137 2.910000e-90 342.0
42 TraesCS5B01G018400 chr5D 81.754 422 58 11 2162 2576 486619301 486618892 4.870000e-88 335.0
43 TraesCS5B01G018400 chr5D 84.729 203 11 12 904 1095 24922400 24922593 5.190000e-43 185.0
44 TraesCS5B01G018400 chr5D 87.234 94 12 0 576 669 25040898 25040991 1.160000e-19 108.0
45 TraesCS5B01G018400 chr6A 91.537 449 22 8 2452 2895 408040476 408040039 3.360000e-169 604.0
46 TraesCS5B01G018400 chr6A 90.850 153 13 1 2896 3047 408039984 408039832 1.430000e-48 204.0
47 TraesCS5B01G018400 chr6A 86.154 65 8 1 669 733 58376597 58376534 5.450000e-08 69.4
48 TraesCS5B01G018400 chr4D 89.926 407 35 3 2169 2574 483167324 483167725 1.250000e-143 520.0
49 TraesCS5B01G018400 chr4D 93.645 299 16 3 2600 2895 483169043 483169341 7.750000e-121 444.0
50 TraesCS5B01G018400 chr4D 91.447 152 11 2 2896 3046 483169396 483169546 1.110000e-49 207.0
51 TraesCS5B01G018400 chr4D 94.828 58 2 1 676 732 473977994 473978051 4.180000e-14 89.8
52 TraesCS5B01G018400 chr4D 88.732 71 7 1 664 733 452388975 452389045 5.410000e-13 86.1
53 TraesCS5B01G018400 chr3B 87.927 439 43 5 2162 2599 633371806 633371377 2.710000e-140 508.0
54 TraesCS5B01G018400 chr3B 87.845 181 20 1 1437 1617 712995752 712995930 8.560000e-51 211.0
55 TraesCS5B01G018400 chr3B 89.542 153 14 2 2896 3047 633370635 633370484 3.100000e-45 193.0
56 TraesCS5B01G018400 chr3B 88.136 59 7 0 676 734 406055834 406055776 1.520000e-08 71.3
57 TraesCS5B01G018400 chr3B 89.474 57 5 1 670 725 779544001 779543945 1.520000e-08 71.3
58 TraesCS5B01G018400 chr3B 90.385 52 4 1 1428 1478 30514809 30514758 1.960000e-07 67.6
59 TraesCS5B01G018400 chr1D 83.758 314 43 5 1014 1326 262287838 262288144 1.070000e-74 291.0
60 TraesCS5B01G018400 chr4B 93.793 145 9 0 1474 1618 190889293 190889437 5.110000e-53 219.0
61 TraesCS5B01G018400 chr2B 93.197 147 10 0 1474 1620 624373398 624373252 1.840000e-52 217.0
62 TraesCS5B01G018400 chr7A 92.982 57 4 0 676 732 1091635 1091691 1.950000e-12 84.2
63 TraesCS5B01G018400 chr4A 96.078 51 1 1 1427 1476 715322441 715322391 7.000000e-12 82.4
64 TraesCS5B01G018400 chr6B 85.294 68 8 2 669 734 300809976 300809909 5.450000e-08 69.4
65 TraesCS5B01G018400 chr7D 86.667 60 6 2 668 727 175659430 175659487 7.050000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G018400 chr5B 17951347 17954393 3046 False 5627.000000 5627 100.000000 1 3047 1 chr5B.!!$F2 3046
1 TraesCS5B01G018400 chr5B 328215264 328215978 714 True 935.000000 935 90.220000 2172 2895 1 chr5B.!!$R5 723
2 TraesCS5B01G018400 chr7B 70374260 70374986 726 False 1022.000000 1022 92.044000 2169 2895 1 chr7B.!!$F1 726
3 TraesCS5B01G018400 chr3A 554413752 554414480 728 False 1007.000000 1007 91.632000 2169 2895 1 chr3A.!!$F1 726
4 TraesCS5B01G018400 chr2A 777539381 777540314 933 True 581.500000 959 90.712000 2169 3047 2 chr2A.!!$R1 878
5 TraesCS5B01G018400 chr1A 319084586 319085535 949 True 565.000000 913 90.770500 2169 3047 2 chr1A.!!$R3 878
6 TraesCS5B01G018400 chr2D 578643561 578644474 913 True 549.000000 909 89.419500 2173 3047 2 chr2D.!!$R1 874
7 TraesCS5B01G018400 chr6D 4812251 4813196 945 False 527.000000 850 89.342000 2169 3047 2 chr6D.!!$F1 878
8 TraesCS5B01G018400 chr1B 503882221 503882895 674 True 465.000000 699 93.874500 2426 3047 2 chr1B.!!$R6 621
9 TraesCS5B01G018400 chr5A 17628258 17629426 1168 False 437.700000 667 89.892667 339 2047 3 chr5A.!!$F1 1708
10 TraesCS5B01G018400 chr5D 24973950 24974944 994 True 582.000000 630 88.437000 799 2048 2 chr5D.!!$R2 1249
11 TraesCS5B01G018400 chr5D 25040220 25043203 2983 False 490.250000 640 87.800000 1 2161 4 chr5D.!!$F3 2160
12 TraesCS5B01G018400 chr5D 24942884 24943562 678 False 360.500000 379 87.335500 1091 2054 2 chr5D.!!$F2 963
13 TraesCS5B01G018400 chr6A 408039832 408040476 644 True 404.000000 604 91.193500 2452 3047 2 chr6A.!!$R2 595
14 TraesCS5B01G018400 chr4D 483167324 483169546 2222 False 390.333333 520 91.672667 2169 3046 3 chr4D.!!$F3 877
15 TraesCS5B01G018400 chr3B 633370484 633371806 1322 True 350.500000 508 88.734500 2162 3047 2 chr3B.!!$R4 885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 98 0.105039 GGCCGTCAGAACTATCCCAG 59.895 60.0 0.0 0.00 0.00 4.45 F
729 844 0.390998 TCGAAAGATGCATGCGGTCA 60.391 50.0 20.7 1.95 33.31 4.02 F
730 845 0.659427 CGAAAGATGCATGCGGTCAT 59.341 50.0 20.7 9.58 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1627 2746 0.188342 AACTTGGCCATGTGAGGGTT 59.812 50.0 23.79 5.35 0.00 4.11 R
1978 3104 0.317436 GCATACTCGACGAGCCTCTG 60.317 60.0 24.38 16.22 32.04 3.35 R
2705 5454 0.872388 GGTGTTAGCACAAGTTCCGG 59.128 55.0 12.05 0.00 46.95 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.687215 GACGGCCTGAGCACTGCA 62.687 66.667 0.00 0.00 42.56 4.41
66 70 4.830600 AGAGAGCTATAGGCCTAACTGAAC 59.169 45.833 18.42 7.29 43.05 3.18
75 79 1.726853 CCTAACTGAACGGAAGGCAG 58.273 55.000 0.00 0.00 41.47 4.85
78 82 2.747855 CTGAACGGAAGGCAGGCC 60.748 66.667 0.97 0.97 35.06 5.19
90 94 0.530870 GGCAGGCCGTCAGAACTATC 60.531 60.000 0.00 0.00 0.00 2.08
94 98 0.105039 GGCCGTCAGAACTATCCCAG 59.895 60.000 0.00 0.00 0.00 4.45
109 113 8.792830 AACTATCCCAGTTGAGGTATGTATTA 57.207 34.615 0.00 0.00 46.01 0.98
110 114 8.191534 ACTATCCCAGTTGAGGTATGTATTAC 57.808 38.462 0.00 0.00 31.59 1.89
113 117 5.301045 TCCCAGTTGAGGTATGTATTACTCG 59.699 44.000 0.00 0.00 0.00 4.18
114 118 5.301045 CCCAGTTGAGGTATGTATTACTCGA 59.699 44.000 0.00 0.00 0.00 4.04
115 119 6.015350 CCCAGTTGAGGTATGTATTACTCGAT 60.015 42.308 0.00 0.00 0.00 3.59
116 120 7.085116 CCAGTTGAGGTATGTATTACTCGATC 58.915 42.308 0.00 0.00 0.00 3.69
117 121 7.255486 CCAGTTGAGGTATGTATTACTCGATCA 60.255 40.741 0.00 0.00 0.00 2.92
118 122 8.300286 CAGTTGAGGTATGTATTACTCGATCAT 58.700 37.037 0.00 0.00 0.00 2.45
144 148 8.635765 ATTTGATCTTTGTTTCTGGCTAGTTA 57.364 30.769 0.00 0.00 0.00 2.24
149 153 9.989869 GATCTTTGTTTCTGGCTAGTTAATTAC 57.010 33.333 0.00 0.00 0.00 1.89
169 173 8.962884 AATTACTGCAATTGGTTTTCTCTTTT 57.037 26.923 7.72 0.00 35.46 2.27
175 179 5.985530 GCAATTGGTTTTCTCTTTTAGCTGT 59.014 36.000 7.72 0.00 0.00 4.40
176 180 6.479990 GCAATTGGTTTTCTCTTTTAGCTGTT 59.520 34.615 7.72 0.00 0.00 3.16
177 181 7.517259 GCAATTGGTTTTCTCTTTTAGCTGTTG 60.517 37.037 7.72 0.00 0.00 3.33
190 194 3.981071 AGCTGTTGTTGCTACCAGATA 57.019 42.857 8.32 0.00 39.21 1.98
201 205 2.939103 GCTACCAGATAACCAGCTTGTG 59.061 50.000 0.00 0.00 0.00 3.33
212 216 1.563111 CAGCTTGTGGCACAAACTTG 58.437 50.000 28.45 22.67 44.16 3.16
216 220 2.798145 GCTTGTGGCACAAACTTGTACC 60.798 50.000 30.66 10.28 44.16 3.34
237 241 3.406764 CATGGATACCTCAGCTTTAGCC 58.593 50.000 0.00 0.00 43.38 3.93
252 256 2.202878 GCCGCAAGCTCGACCATA 60.203 61.111 0.00 0.00 38.99 2.74
258 262 1.807755 GCAAGCTCGACCATATGCTCA 60.808 52.381 0.00 0.00 34.38 4.26
269 275 3.118629 ACCATATGCTCAAGTGTGACGAT 60.119 43.478 0.00 0.00 0.00 3.73
275 281 2.600731 CTCAAGTGTGACGATCTGACC 58.399 52.381 0.00 0.00 0.00 4.02
276 282 2.230025 CTCAAGTGTGACGATCTGACCT 59.770 50.000 0.00 0.00 0.00 3.85
280 286 1.135257 GTGTGACGATCTGACCTCCAG 60.135 57.143 0.00 0.00 44.27 3.86
293 299 1.190833 CCTCCAGAGGGATCGGGATG 61.191 65.000 5.74 0.00 43.91 3.51
294 300 1.152247 TCCAGAGGGATCGGGATGG 60.152 63.158 0.00 0.49 38.64 3.51
303 309 4.731853 TCGGGATGGCACCAGGGA 62.732 66.667 8.11 0.86 0.00 4.20
308 314 1.225704 GATGGCACCAGGGAAGAGG 59.774 63.158 0.00 0.00 0.00 3.69
310 316 2.936032 GGCACCAGGGAAGAGGGT 60.936 66.667 0.00 0.00 34.59 4.34
318 324 2.425102 CCAGGGAAGAGGGTAGGTAGAG 60.425 59.091 0.00 0.00 0.00 2.43
343 349 0.812549 GGGACGAGACTTGGAGAGAC 59.187 60.000 0.00 0.00 0.00 3.36
420 431 0.969894 ACTCCTCTGTTCGGTTCAGG 59.030 55.000 0.00 0.00 34.15 3.86
467 478 1.358725 CCATAGGCCACACACGTTCG 61.359 60.000 5.01 0.00 0.00 3.95
487 498 5.345609 TCGCACGTGTTAAAATTATGTGT 57.654 34.783 18.38 0.00 0.00 3.72
488 499 5.375717 TCGCACGTGTTAAAATTATGTGTC 58.624 37.500 18.38 0.00 0.00 3.67
489 500 4.256539 CGCACGTGTTAAAATTATGTGTCG 59.743 41.667 18.38 2.00 0.00 4.35
492 503 6.521821 GCACGTGTTAAAATTATGTGTCGAAT 59.478 34.615 18.38 0.00 0.00 3.34
514 525 7.149176 CGAATATATGTGTACGAGTTGTGCTAC 60.149 40.741 0.00 0.00 33.83 3.58
515 526 2.040714 TGTGTACGAGTTGTGCTACG 57.959 50.000 0.00 0.00 33.83 3.51
519 610 1.717645 GTACGAGTTGTGCTACGGTTG 59.282 52.381 0.00 0.00 0.00 3.77
522 613 1.191647 CGAGTTGTGCTACGGTTGAAC 59.808 52.381 0.00 0.00 0.00 3.18
537 628 4.201685 CGGTTGAACTTGTAATTAGCGGAG 60.202 45.833 0.00 0.00 0.00 4.63
538 629 4.094442 GGTTGAACTTGTAATTAGCGGAGG 59.906 45.833 0.00 0.00 0.00 4.30
560 652 3.933332 GGCTAGGTGTTTGAGTCATACAC 59.067 47.826 28.57 28.57 42.53 2.90
565 657 3.059868 GGTGTTTGAGTCATACACGTGTG 60.060 47.826 30.83 15.50 43.57 3.82
568 660 5.631929 GTGTTTGAGTCATACACGTGTGATA 59.368 40.000 30.83 12.08 36.82 2.15
574 666 7.093992 TGAGTCATACACGTGTGATATGAAAA 58.906 34.615 30.83 16.05 36.42 2.29
577 669 9.249457 AGTCATACACGTGTGATATGAAAATAG 57.751 33.333 30.83 8.07 36.42 1.73
578 670 9.244799 GTCATACACGTGTGATATGAAAATAGA 57.755 33.333 30.83 5.95 36.42 1.98
579 671 9.244799 TCATACACGTGTGATATGAAAATAGAC 57.755 33.333 30.83 0.00 34.20 2.59
581 673 9.817809 ATACACGTGTGATATGAAAATAGACTT 57.182 29.630 30.83 0.00 0.00 3.01
582 674 8.186178 ACACGTGTGATATGAAAATAGACTTC 57.814 34.615 22.71 0.00 0.00 3.01
583 675 7.817478 ACACGTGTGATATGAAAATAGACTTCA 59.183 33.333 22.71 0.00 37.22 3.02
584 676 8.655970 CACGTGTGATATGAAAATAGACTTCAA 58.344 33.333 7.58 0.00 36.43 2.69
586 678 9.478019 CGTGTGATATGAAAATAGACTTCAAAC 57.522 33.333 0.00 0.00 36.43 2.93
660 775 3.420943 ACGCAGTGGTCAAAGTGC 58.579 55.556 0.00 0.00 42.51 4.40
669 784 3.701040 AGTGGTCAAAGTGCTGTTTGATT 59.299 39.130 14.55 2.80 45.71 2.57
670 785 4.160252 AGTGGTCAAAGTGCTGTTTGATTT 59.840 37.500 14.55 2.54 45.71 2.17
671 786 4.268405 GTGGTCAAAGTGCTGTTTGATTTG 59.732 41.667 14.55 0.00 45.71 2.32
674 789 5.220453 GGTCAAAGTGCTGTTTGATTTGTTG 60.220 40.000 14.55 0.00 45.71 3.33
675 790 5.348451 GTCAAAGTGCTGTTTGATTTGTTGT 59.652 36.000 14.55 0.00 45.71 3.32
676 791 5.931146 TCAAAGTGCTGTTTGATTTGTTGTT 59.069 32.000 9.24 0.00 40.68 2.83
677 792 6.426328 TCAAAGTGCTGTTTGATTTGTTGTTT 59.574 30.769 9.24 0.00 40.68 2.83
678 793 6.799926 AAGTGCTGTTTGATTTGTTGTTTT 57.200 29.167 0.00 0.00 0.00 2.43
679 794 6.799926 AGTGCTGTTTGATTTGTTGTTTTT 57.200 29.167 0.00 0.00 0.00 1.94
680 795 6.601264 AGTGCTGTTTGATTTGTTGTTTTTG 58.399 32.000 0.00 0.00 0.00 2.44
681 796 5.794448 GTGCTGTTTGATTTGTTGTTTTTGG 59.206 36.000 0.00 0.00 0.00 3.28
682 797 5.702670 TGCTGTTTGATTTGTTGTTTTTGGA 59.297 32.000 0.00 0.00 0.00 3.53
684 799 7.080724 GCTGTTTGATTTGTTGTTTTTGGAAA 58.919 30.769 0.00 0.00 0.00 3.13
685 800 7.271008 GCTGTTTGATTTGTTGTTTTTGGAAAG 59.729 33.333 0.00 0.00 0.00 2.62
687 802 7.445402 TGTTTGATTTGTTGTTTTTGGAAAGGA 59.555 29.630 0.00 0.00 0.00 3.36
688 803 7.608308 TTGATTTGTTGTTTTTGGAAAGGAG 57.392 32.000 0.00 0.00 0.00 3.69
690 805 5.746990 TTTGTTGTTTTTGGAAAGGAGGA 57.253 34.783 0.00 0.00 0.00 3.71
691 806 5.948742 TTGTTGTTTTTGGAAAGGAGGAT 57.051 34.783 0.00 0.00 0.00 3.24
693 808 4.959210 TGTTGTTTTTGGAAAGGAGGATCA 59.041 37.500 0.00 0.00 36.25 2.92
694 809 5.163457 TGTTGTTTTTGGAAAGGAGGATCAC 60.163 40.000 0.00 0.00 36.25 3.06
695 810 3.895041 TGTTTTTGGAAAGGAGGATCACC 59.105 43.478 0.00 0.00 36.25 4.02
696 811 2.899303 TTTGGAAAGGAGGATCACCC 57.101 50.000 0.00 0.00 36.25 4.61
698 813 0.919289 TGGAAAGGAGGATCACCCCC 60.919 60.000 0.00 0.79 36.25 5.40
699 814 1.527370 GAAAGGAGGATCACCCCCG 59.473 63.158 0.00 0.00 36.25 5.73
700 815 1.984288 GAAAGGAGGATCACCCCCGG 61.984 65.000 0.00 0.00 36.25 5.73
706 821 3.866582 GATCACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
715 830 1.745115 CCGGCCTCTGCATTCGAAA 60.745 57.895 0.00 0.00 40.13 3.46
716 831 1.709147 CCGGCCTCTGCATTCGAAAG 61.709 60.000 0.00 0.00 40.13 2.62
717 832 0.740868 CGGCCTCTGCATTCGAAAGA 60.741 55.000 0.00 0.00 40.13 2.52
718 833 1.673168 GGCCTCTGCATTCGAAAGAT 58.327 50.000 0.00 0.00 38.82 2.40
719 834 1.332997 GGCCTCTGCATTCGAAAGATG 59.667 52.381 0.00 0.00 38.82 2.90
720 835 1.268437 GCCTCTGCATTCGAAAGATGC 60.268 52.381 13.93 13.93 41.66 3.91
721 836 2.011947 CCTCTGCATTCGAAAGATGCA 58.988 47.619 20.38 20.38 45.45 3.96
722 837 2.617308 CCTCTGCATTCGAAAGATGCAT 59.383 45.455 21.51 0.00 45.97 3.96
723 838 3.548214 CCTCTGCATTCGAAAGATGCATG 60.548 47.826 21.51 17.04 45.97 4.06
724 839 2.117137 CTGCATTCGAAAGATGCATGC 58.883 47.619 21.51 15.90 46.68 4.06
725 840 1.118033 GCATTCGAAAGATGCATGCG 58.882 50.000 14.09 2.49 40.65 4.73
729 844 0.390998 TCGAAAGATGCATGCGGTCA 60.391 50.000 20.70 1.95 33.31 4.02
730 845 0.659427 CGAAAGATGCATGCGGTCAT 59.341 50.000 20.70 9.58 0.00 3.06
731 846 1.866601 CGAAAGATGCATGCGGTCATA 59.133 47.619 20.70 0.86 0.00 2.15
732 847 2.287644 CGAAAGATGCATGCGGTCATAA 59.712 45.455 20.70 0.15 0.00 1.90
733 848 3.242706 CGAAAGATGCATGCGGTCATAAA 60.243 43.478 20.70 0.00 0.00 1.40
736 851 2.032054 AGATGCATGCGGTCATAAAACG 59.968 45.455 20.70 0.00 0.00 3.60
737 852 1.160989 TGCATGCGGTCATAAAACGT 58.839 45.000 14.09 0.00 0.00 3.99
740 855 2.667171 GCATGCGGTCATAAAACGTTGT 60.667 45.455 0.00 0.00 0.00 3.32
741 856 3.560503 CATGCGGTCATAAAACGTTGTT 58.439 40.909 0.00 1.17 0.00 2.83
742 857 3.694535 TGCGGTCATAAAACGTTGTTT 57.305 38.095 0.00 0.00 0.00 2.83
744 859 3.064958 TGCGGTCATAAAACGTTGTTTGA 59.935 39.130 7.44 7.44 0.00 2.69
746 861 4.087930 GCGGTCATAAAACGTTGTTTGATG 59.912 41.667 13.69 11.83 0.00 3.07
747 862 4.615121 CGGTCATAAAACGTTGTTTGATGG 59.385 41.667 13.69 6.39 0.00 3.51
749 864 5.219633 GTCATAAAACGTTGTTTGATGGCT 58.780 37.500 13.69 0.00 0.00 4.75
750 865 5.689961 GTCATAAAACGTTGTTTGATGGCTT 59.310 36.000 13.69 0.00 0.00 4.35
751 866 6.200097 GTCATAAAACGTTGTTTGATGGCTTT 59.800 34.615 13.69 0.00 0.00 3.51
753 868 7.593273 TCATAAAACGTTGTTTGATGGCTTTAG 59.407 33.333 16.11 0.00 0.00 1.85
755 870 4.749245 ACGTTGTTTGATGGCTTTAGAG 57.251 40.909 0.00 0.00 0.00 2.43
756 871 3.502211 ACGTTGTTTGATGGCTTTAGAGG 59.498 43.478 0.00 0.00 0.00 3.69
757 872 3.119849 CGTTGTTTGATGGCTTTAGAGGG 60.120 47.826 0.00 0.00 0.00 4.30
758 873 2.446435 TGTTTGATGGCTTTAGAGGGC 58.554 47.619 0.00 0.00 0.00 5.19
759 874 2.041620 TGTTTGATGGCTTTAGAGGGCT 59.958 45.455 0.00 0.00 0.00 5.19
761 876 4.263727 TGTTTGATGGCTTTAGAGGGCTTA 60.264 41.667 0.00 0.00 0.00 3.09
762 877 4.796110 TTGATGGCTTTAGAGGGCTTAT 57.204 40.909 0.00 0.00 0.00 1.73
765 880 6.054860 TGATGGCTTTAGAGGGCTTATATC 57.945 41.667 0.00 0.00 0.00 1.63
766 881 5.547666 TGATGGCTTTAGAGGGCTTATATCA 59.452 40.000 0.00 0.00 0.00 2.15
767 882 5.489792 TGGCTTTAGAGGGCTTATATCAG 57.510 43.478 0.00 0.00 0.00 2.90
769 884 4.287326 GGCTTTAGAGGGCTTATATCAGGT 59.713 45.833 0.00 0.00 0.00 4.00
770 885 5.221945 GGCTTTAGAGGGCTTATATCAGGTT 60.222 44.000 0.00 0.00 0.00 3.50
771 886 6.013639 GGCTTTAGAGGGCTTATATCAGGTTA 60.014 42.308 0.00 0.00 0.00 2.85
772 887 7.311360 GGCTTTAGAGGGCTTATATCAGGTTAT 60.311 40.741 0.00 0.00 0.00 1.89
790 905 9.487442 TCAGGTTATTTATTTATTTTGGCCTCT 57.513 29.630 3.32 0.00 0.00 3.69
791 906 9.533253 CAGGTTATTTATTTATTTTGGCCTCTG 57.467 33.333 3.32 0.00 0.00 3.35
793 908 7.984617 GGTTATTTATTTATTTTGGCCTCTGCA 59.015 33.333 3.32 0.00 40.13 4.41
795 910 9.598517 TTATTTATTTATTTTGGCCTCTGCAAG 57.401 29.630 3.32 0.00 40.13 4.01
815 1804 9.307121 CTGCAAGTATATCAGGTTATATAGTGC 57.693 37.037 0.00 0.00 37.22 4.40
820 1809 8.972127 AGTATATCAGGTTATATAGTGCACAGG 58.028 37.037 21.04 0.00 30.26 4.00
824 1813 3.325135 AGGTTATATAGTGCACAGGAGGC 59.675 47.826 21.04 3.24 0.00 4.70
831 1930 3.730761 GCACAGGAGGCAAGCACG 61.731 66.667 0.00 0.00 0.00 5.34
838 1937 2.049063 AGGCAAGCACGAGACGTC 60.049 61.111 7.70 7.70 38.32 4.34
847 1946 1.531264 GCACGAGACGTCACACGATAT 60.531 52.381 26.75 9.90 46.05 1.63
853 1952 6.795593 CACGAGACGTCACACGATATTATTAT 59.204 38.462 26.75 7.16 46.05 1.28
854 1953 7.953710 CACGAGACGTCACACGATATTATTATA 59.046 37.037 26.75 0.00 46.05 0.98
898 1997 4.388499 AGGTACGTGCTTGGCCGG 62.388 66.667 3.01 0.00 0.00 6.13
953 2063 4.381932 CCGGCAATTAAGAAAGGAGCAAAT 60.382 41.667 0.00 0.00 0.00 2.32
957 2067 5.290400 GCAATTAAGAAAGGAGCAAATGAGC 59.710 40.000 0.00 0.00 0.00 4.26
1011 2126 3.645268 GAAGGGAATGGCCGGCTGT 62.645 63.158 28.56 12.75 37.63 4.40
1012 2127 2.265467 GAAGGGAATGGCCGGCTGTA 62.265 60.000 28.56 13.87 37.63 2.74
1226 2341 1.934220 GAGTCGTCGGTCATCCTGCA 61.934 60.000 0.00 0.00 0.00 4.41
1317 2432 4.087892 GCTCTCTTCTGGGCCGCA 62.088 66.667 0.00 0.00 0.00 5.69
1346 2461 1.878953 GGCACGGTAGGTCCATATTG 58.121 55.000 0.00 0.00 35.57 1.90
1347 2462 1.226746 GCACGGTAGGTCCATATTGC 58.773 55.000 0.00 0.00 35.57 3.56
1350 2465 3.493699 GCACGGTAGGTCCATATTGCTTA 60.494 47.826 0.00 0.00 35.57 3.09
1351 2466 4.802918 GCACGGTAGGTCCATATTGCTTAT 60.803 45.833 0.00 0.00 35.57 1.73
1352 2467 5.305585 CACGGTAGGTCCATATTGCTTATT 58.694 41.667 0.00 0.00 35.57 1.40
1353 2468 6.460781 CACGGTAGGTCCATATTGCTTATTA 58.539 40.000 0.00 0.00 35.57 0.98
1354 2469 6.367969 CACGGTAGGTCCATATTGCTTATTAC 59.632 42.308 0.00 0.00 35.57 1.89
1355 2470 6.269307 ACGGTAGGTCCATATTGCTTATTACT 59.731 38.462 0.00 0.00 35.57 2.24
1356 2471 6.812160 CGGTAGGTCCATATTGCTTATTACTC 59.188 42.308 0.00 0.00 35.57 2.59
1357 2472 7.309867 CGGTAGGTCCATATTGCTTATTACTCT 60.310 40.741 0.00 0.00 35.57 3.24
1358 2473 8.035984 GGTAGGTCCATATTGCTTATTACTCTC 58.964 40.741 0.00 0.00 35.97 3.20
1359 2474 7.010339 AGGTCCATATTGCTTATTACTCTCC 57.990 40.000 0.00 0.00 0.00 3.71
1360 2475 6.013293 AGGTCCATATTGCTTATTACTCTCCC 60.013 42.308 0.00 0.00 0.00 4.30
1361 2476 6.013293 GGTCCATATTGCTTATTACTCTCCCT 60.013 42.308 0.00 0.00 0.00 4.20
1362 2477 6.876257 GTCCATATTGCTTATTACTCTCCCTG 59.124 42.308 0.00 0.00 0.00 4.45
1363 2478 6.558775 TCCATATTGCTTATTACTCTCCCTGT 59.441 38.462 0.00 0.00 0.00 4.00
1364 2479 7.072454 TCCATATTGCTTATTACTCTCCCTGTT 59.928 37.037 0.00 0.00 0.00 3.16
1365 2480 7.721399 CCATATTGCTTATTACTCTCCCTGTTT 59.279 37.037 0.00 0.00 0.00 2.83
1366 2481 8.778358 CATATTGCTTATTACTCTCCCTGTTTC 58.222 37.037 0.00 0.00 0.00 2.78
1367 2482 6.374417 TTGCTTATTACTCTCCCTGTTTCT 57.626 37.500 0.00 0.00 0.00 2.52
1368 2483 6.374417 TGCTTATTACTCTCCCTGTTTCTT 57.626 37.500 0.00 0.00 0.00 2.52
1369 2484 7.490657 TGCTTATTACTCTCCCTGTTTCTTA 57.509 36.000 0.00 0.00 0.00 2.10
1370 2485 7.913789 TGCTTATTACTCTCCCTGTTTCTTAA 58.086 34.615 0.00 0.00 0.00 1.85
1371 2486 8.548877 TGCTTATTACTCTCCCTGTTTCTTAAT 58.451 33.333 0.00 0.00 0.00 1.40
1376 2491 6.547930 ACTCTCCCTGTTTCTTAATACTCC 57.452 41.667 0.00 0.00 0.00 3.85
1377 2492 5.425862 ACTCTCCCTGTTTCTTAATACTCCC 59.574 44.000 0.00 0.00 0.00 4.30
1378 2493 5.600749 TCTCCCTGTTTCTTAATACTCCCT 58.399 41.667 0.00 0.00 0.00 4.20
1379 2494 5.661759 TCTCCCTGTTTCTTAATACTCCCTC 59.338 44.000 0.00 0.00 0.00 4.30
1380 2495 4.720273 TCCCTGTTTCTTAATACTCCCTCC 59.280 45.833 0.00 0.00 0.00 4.30
1381 2496 4.473559 CCCTGTTTCTTAATACTCCCTCCA 59.526 45.833 0.00 0.00 0.00 3.86
1382 2497 5.132816 CCCTGTTTCTTAATACTCCCTCCAT 59.867 44.000 0.00 0.00 0.00 3.41
1383 2498 6.292150 CCTGTTTCTTAATACTCCCTCCATC 58.708 44.000 0.00 0.00 0.00 3.51
1384 2499 6.248569 TGTTTCTTAATACTCCCTCCATCC 57.751 41.667 0.00 0.00 0.00 3.51
1385 2500 5.729229 TGTTTCTTAATACTCCCTCCATCCA 59.271 40.000 0.00 0.00 0.00 3.41
1386 2501 6.216662 TGTTTCTTAATACTCCCTCCATCCAA 59.783 38.462 0.00 0.00 0.00 3.53
1387 2502 6.901615 TTCTTAATACTCCCTCCATCCAAA 57.098 37.500 0.00 0.00 0.00 3.28
1388 2503 6.901615 TCTTAATACTCCCTCCATCCAAAA 57.098 37.500 0.00 0.00 0.00 2.44
1389 2504 7.278724 TCTTAATACTCCCTCCATCCAAAAA 57.721 36.000 0.00 0.00 0.00 1.94
1453 2568 9.657419 ATCCCTTTTATTCATTTTGATGACAAC 57.343 29.630 0.00 0.00 35.63 3.32
1454 2569 8.869109 TCCCTTTTATTCATTTTGATGACAACT 58.131 29.630 0.00 0.00 35.63 3.16
1461 2576 8.915871 ATTCATTTTGATGACAACTATTTCCG 57.084 30.769 0.00 0.00 35.63 4.30
1462 2577 7.680442 TCATTTTGATGACAACTATTTCCGA 57.320 32.000 0.00 0.00 35.63 4.55
1463 2578 8.105097 TCATTTTGATGACAACTATTTCCGAA 57.895 30.769 0.00 0.00 35.63 4.30
1464 2579 8.020819 TCATTTTGATGACAACTATTTCCGAAC 58.979 33.333 0.00 0.00 35.63 3.95
1465 2580 5.524511 TTGATGACAACTATTTCCGAACG 57.475 39.130 0.00 0.00 0.00 3.95
1466 2581 3.930229 TGATGACAACTATTTCCGAACGG 59.070 43.478 6.94 6.94 0.00 4.44
1467 2582 3.663995 TGACAACTATTTCCGAACGGA 57.336 42.857 12.04 12.04 43.52 4.69
1468 2583 3.581755 TGACAACTATTTCCGAACGGAG 58.418 45.455 15.34 7.27 46.06 4.63
1469 2584 2.928116 GACAACTATTTCCGAACGGAGG 59.072 50.000 15.34 10.00 46.06 4.30
1470 2585 2.277084 CAACTATTTCCGAACGGAGGG 58.723 52.381 15.34 9.70 46.06 4.30
1471 2586 1.856629 ACTATTTCCGAACGGAGGGA 58.143 50.000 15.34 7.17 46.06 4.20
1472 2587 1.755380 ACTATTTCCGAACGGAGGGAG 59.245 52.381 15.34 14.71 46.06 4.30
1473 2588 1.755380 CTATTTCCGAACGGAGGGAGT 59.245 52.381 15.34 1.96 46.06 3.85
1474 2589 1.856629 ATTTCCGAACGGAGGGAGTA 58.143 50.000 15.34 0.00 46.06 2.59
1475 2590 1.856629 TTTCCGAACGGAGGGAGTAT 58.143 50.000 15.34 0.00 46.06 2.12
1476 2591 2.734755 TTCCGAACGGAGGGAGTATA 57.265 50.000 15.34 0.00 46.06 1.47
1477 2592 2.734755 TCCGAACGGAGGGAGTATAA 57.265 50.000 12.04 0.00 39.76 0.98
1478 2593 2.579873 TCCGAACGGAGGGAGTATAAG 58.420 52.381 12.04 0.00 39.76 1.73
1479 2594 2.092212 TCCGAACGGAGGGAGTATAAGT 60.092 50.000 12.04 0.00 39.76 2.24
1480 2595 2.292845 CCGAACGGAGGGAGTATAAGTC 59.707 54.545 7.53 0.00 37.50 3.01
1481 2596 3.212685 CGAACGGAGGGAGTATAAGTCT 58.787 50.000 0.00 0.00 0.00 3.24
1482 2597 3.631227 CGAACGGAGGGAGTATAAGTCTT 59.369 47.826 0.00 0.00 0.00 3.01
1483 2598 4.097589 CGAACGGAGGGAGTATAAGTCTTT 59.902 45.833 0.00 0.00 0.00 2.52
1484 2599 5.340439 AACGGAGGGAGTATAAGTCTTTG 57.660 43.478 0.00 0.00 0.00 2.77
1485 2600 4.351127 ACGGAGGGAGTATAAGTCTTTGT 58.649 43.478 0.00 0.00 0.00 2.83
1486 2601 5.513233 ACGGAGGGAGTATAAGTCTTTGTA 58.487 41.667 0.00 0.00 0.00 2.41
1487 2602 5.593502 ACGGAGGGAGTATAAGTCTTTGTAG 59.406 44.000 0.00 0.00 0.00 2.74
1488 2603 5.826737 CGGAGGGAGTATAAGTCTTTGTAGA 59.173 44.000 0.00 0.00 0.00 2.59
1489 2604 6.016943 CGGAGGGAGTATAAGTCTTTGTAGAG 60.017 46.154 0.00 0.00 0.00 2.43
1490 2605 7.061688 GGAGGGAGTATAAGTCTTTGTAGAGA 58.938 42.308 0.00 0.00 0.00 3.10
1491 2606 7.726738 GGAGGGAGTATAAGTCTTTGTAGAGAT 59.273 40.741 0.00 0.00 0.00 2.75
1492 2607 9.138596 GAGGGAGTATAAGTCTTTGTAGAGATT 57.861 37.037 0.00 0.00 0.00 2.40
1493 2608 9.138596 AGGGAGTATAAGTCTTTGTAGAGATTC 57.861 37.037 0.00 0.00 0.00 2.52
1494 2609 8.361889 GGGAGTATAAGTCTTTGTAGAGATTCC 58.638 40.741 0.00 0.00 0.00 3.01
1495 2610 8.915036 GGAGTATAAGTCTTTGTAGAGATTCCA 58.085 37.037 0.00 0.00 0.00 3.53
1496 2611 9.738832 GAGTATAAGTCTTTGTAGAGATTCCAC 57.261 37.037 0.00 0.00 0.00 4.02
1497 2612 9.482175 AGTATAAGTCTTTGTAGAGATTCCACT 57.518 33.333 0.00 0.00 0.00 4.00
1502 2617 9.442047 AAGTCTTTGTAGAGATTCCACTAAATG 57.558 33.333 0.00 0.00 0.00 2.32
1517 2632 4.982916 CACTAAATGGACTACATACGGAGC 59.017 45.833 0.00 0.00 39.40 4.70
1518 2633 4.647853 ACTAAATGGACTACATACGGAGCA 59.352 41.667 0.00 0.00 39.40 4.26
1519 2634 4.481368 AAATGGACTACATACGGAGCAA 57.519 40.909 0.00 0.00 39.40 3.91
1520 2635 4.481368 AATGGACTACATACGGAGCAAA 57.519 40.909 0.00 0.00 39.40 3.68
1521 2636 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
1522 2637 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
1523 2638 5.601583 TGGACTACATACGGAGCAAAATA 57.398 39.130 0.00 0.00 0.00 1.40
1524 2639 5.979993 TGGACTACATACGGAGCAAAATAA 58.020 37.500 0.00 0.00 0.00 1.40
1525 2640 6.408035 TGGACTACATACGGAGCAAAATAAA 58.592 36.000 0.00 0.00 0.00 1.40
1526 2641 7.051623 TGGACTACATACGGAGCAAAATAAAT 58.948 34.615 0.00 0.00 0.00 1.40
1527 2642 7.011950 TGGACTACATACGGAGCAAAATAAATG 59.988 37.037 0.00 0.00 0.00 2.32
1528 2643 7.225931 GGACTACATACGGAGCAAAATAAATGA 59.774 37.037 0.00 0.00 0.00 2.57
1529 2644 8.500753 ACTACATACGGAGCAAAATAAATGAA 57.499 30.769 0.00 0.00 0.00 2.57
1530 2645 9.120538 ACTACATACGGAGCAAAATAAATGAAT 57.879 29.630 0.00 0.00 0.00 2.57
1531 2646 9.599322 CTACATACGGAGCAAAATAAATGAATC 57.401 33.333 0.00 0.00 0.00 2.52
1532 2647 8.225603 ACATACGGAGCAAAATAAATGAATCT 57.774 30.769 0.00 0.00 0.00 2.40
1533 2648 9.337396 ACATACGGAGCAAAATAAATGAATCTA 57.663 29.630 0.00 0.00 0.00 1.98
1536 2651 8.911247 ACGGAGCAAAATAAATGAATCTAAAC 57.089 30.769 0.00 0.00 0.00 2.01
1537 2652 8.739972 ACGGAGCAAAATAAATGAATCTAAACT 58.260 29.630 0.00 0.00 0.00 2.66
1538 2653 9.573133 CGGAGCAAAATAAATGAATCTAAACTT 57.427 29.630 0.00 0.00 0.00 2.66
1567 2682 9.822185 AATGCATCTATATACATCTTTATGCGA 57.178 29.630 0.00 0.00 40.96 5.10
1568 2683 9.993454 ATGCATCTATATACATCTTTATGCGAT 57.007 29.630 0.00 0.00 40.96 4.58
1569 2684 9.822185 TGCATCTATATACATCTTTATGCGATT 57.178 29.630 0.00 0.00 40.96 3.34
1610 2725 8.943909 ATAAAGACTTACATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1611 2726 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1612 2727 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1613 2728 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1614 2729 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1615 2730 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
1616 2731 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
1617 2732 3.705072 ACATTTAGGAACGGAGGGAGTAG 59.295 47.826 0.00 0.00 0.00 2.57
1620 2735 4.591321 TTAGGAACGGAGGGAGTAGTTA 57.409 45.455 0.00 0.00 0.00 2.24
1627 2746 5.700402 ACGGAGGGAGTAGTTACTACTTA 57.300 43.478 23.73 0.00 45.90 2.24
1642 2761 1.072266 ACTTAACCCTCACATGGCCA 58.928 50.000 8.56 8.56 0.00 5.36
1643 2762 1.427368 ACTTAACCCTCACATGGCCAA 59.573 47.619 10.96 0.00 0.00 4.52
1661 2785 5.241949 TGGCCAAGTTCATGTATACGTTTTT 59.758 36.000 0.61 0.00 0.00 1.94
1672 2798 5.328691 TGTATACGTTTTTAATGCAGCTGC 58.671 37.500 31.89 31.89 42.50 5.25
1677 2803 3.735240 CGTTTTTAATGCAGCTGCTGAAA 59.265 39.130 36.61 27.93 42.66 2.69
1782 2908 1.539124 GGGGGTGTTGAGGGAGTCT 60.539 63.158 0.00 0.00 0.00 3.24
1802 2928 1.916697 GAGGCCAAGTTCTTCAGCGC 61.917 60.000 5.01 0.00 0.00 5.92
1945 3071 2.126149 CAGAGCTCTTCTGCGCGT 60.126 61.111 15.27 0.00 46.30 6.01
2065 3191 2.269241 GCCTACCAAGCTCGCCTT 59.731 61.111 0.00 0.00 0.00 4.35
2117 3243 7.658179 TCTTCTGTGATCAGTGTATTTTGTC 57.342 36.000 0.00 0.00 41.91 3.18
2118 3244 7.216494 TCTTCTGTGATCAGTGTATTTTGTCA 58.784 34.615 0.00 0.00 41.91 3.58
2120 3246 7.800155 TCTGTGATCAGTGTATTTTGTCAAA 57.200 32.000 0.00 0.00 41.91 2.69
2143 3269 6.985188 AAAAATAGCAGTGCTCTCGAATTA 57.015 33.333 23.64 0.77 40.44 1.40
2153 3280 6.309980 CAGTGCTCTCGAATTATGTATGGATC 59.690 42.308 0.00 0.00 0.00 3.36
2155 3282 6.646653 GTGCTCTCGAATTATGTATGGATCAA 59.353 38.462 0.00 0.00 0.00 2.57
2162 3289 9.964303 TCGAATTATGTATGGATCAAATTTTGG 57.036 29.630 9.18 0.00 0.00 3.28
2163 3290 9.964303 CGAATTATGTATGGATCAAATTTTGGA 57.036 29.630 9.18 0.00 0.00 3.53
2165 3292 9.748708 AATTATGTATGGATCAAATTTTGGACG 57.251 29.630 9.18 0.00 0.00 4.79
2166 3293 6.773976 ATGTATGGATCAAATTTTGGACGT 57.226 33.333 9.18 0.00 0.00 4.34
2167 3294 5.948588 TGTATGGATCAAATTTTGGACGTG 58.051 37.500 9.18 0.00 0.00 4.49
2194 3321 3.788766 GACATGGTGCCACGCGAC 61.789 66.667 15.93 0.00 0.00 5.19
2221 3348 1.215382 CCTGACCGACGATTGCTGA 59.785 57.895 0.00 0.00 0.00 4.26
2234 3361 3.677601 GATTGCTGACATGTGATTCACG 58.322 45.455 1.15 1.61 37.14 4.35
2274 3401 3.178046 TGGACTGTGGCAATACTAAGGA 58.822 45.455 0.00 0.00 0.00 3.36
2304 3431 6.839301 GTGAGTGAATACGCAACATTAATACG 59.161 38.462 0.00 0.00 38.35 3.06
2334 3463 6.320164 ACGTTGGCCAGCTATTTTATTGAATA 59.680 34.615 18.19 0.00 0.00 1.75
2349 3478 9.793259 TTTTATTGAATATGGTGGATAGAGACC 57.207 33.333 0.00 0.00 0.00 3.85
2379 3508 2.586792 GTCAGGGTGCAGGGCTAG 59.413 66.667 0.00 0.00 0.00 3.42
2388 3517 1.458588 GCAGGGCTAGAGGCTACCT 60.459 63.158 2.85 0.00 41.46 3.08
2415 3544 6.588756 TCAGTGTAATTAACATTCGTGACCTC 59.411 38.462 0.00 0.00 41.10 3.85
2428 3557 2.283388 ACCTCGGTCGGGCAGTAA 60.283 61.111 0.00 0.00 0.00 2.24
2477 3606 3.456380 AATTACTCACCCAACCTGCAT 57.544 42.857 0.00 0.00 0.00 3.96
2705 5454 3.198872 GTTATGCTAGCAGAGGTTGGTC 58.801 50.000 23.89 2.44 38.70 4.02
2707 5456 1.153549 GCTAGCAGAGGTTGGTCCG 60.154 63.158 10.63 0.00 41.99 4.79
2741 5491 6.416750 GCTAACACCTTTACAACAACATCAAC 59.583 38.462 0.00 0.00 0.00 3.18
2773 5523 8.633075 TGAAATAAAGCAACTTCTCTTTGTTG 57.367 30.769 0.00 0.00 44.33 3.33
2842 5596 5.309543 TCCTTTAGACCTGTTGGAAGATGAA 59.690 40.000 0.00 0.00 37.04 2.57
2962 5772 0.673644 CCATCCTCGTCGCCTTGTTT 60.674 55.000 0.00 0.00 0.00 2.83
2976 5786 6.036735 GTCGCCTTGTTTATTTAGCTATGACA 59.963 38.462 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.433838 CAGTGCTCAGGCCGTCAG 60.434 66.667 0.00 0.00 37.74 3.51
11 12 2.282040 AAGTGCAGTGCTCAGGCC 60.282 61.111 17.60 0.00 37.74 5.19
16 17 0.516439 GCAGAAGAAGTGCAGTGCTC 59.484 55.000 17.60 13.26 40.86 4.26
25 26 2.036992 CTCTCTGGTGTGCAGAAGAAGT 59.963 50.000 0.00 0.00 0.00 3.01
75 79 0.105039 CTGGGATAGTTCTGACGGCC 59.895 60.000 0.00 0.00 0.00 6.13
78 82 3.429547 CCTCAACTGGGATAGTTCTGACG 60.430 52.174 0.00 0.00 46.55 4.35
90 94 5.301045 TCGAGTAATACATACCTCAACTGGG 59.699 44.000 0.00 0.00 34.89 4.45
115 119 7.707624 AGCCAGAAACAAAGATCAAATATGA 57.292 32.000 0.00 0.00 40.57 2.15
116 120 8.680903 ACTAGCCAGAAACAAAGATCAAATATG 58.319 33.333 0.00 0.00 0.00 1.78
117 121 8.814038 ACTAGCCAGAAACAAAGATCAAATAT 57.186 30.769 0.00 0.00 0.00 1.28
118 122 8.635765 AACTAGCCAGAAACAAAGATCAAATA 57.364 30.769 0.00 0.00 0.00 1.40
144 148 8.962884 AAAAGAGAAAACCAATTGCAGTAATT 57.037 26.923 0.00 0.00 39.55 1.40
149 153 6.145048 CAGCTAAAAGAGAAAACCAATTGCAG 59.855 38.462 0.00 0.00 0.00 4.41
165 169 4.515191 TCTGGTAGCAACAACAGCTAAAAG 59.485 41.667 0.00 0.00 45.30 2.27
168 172 3.762407 TCTGGTAGCAACAACAGCTAA 57.238 42.857 0.00 0.00 45.30 3.09
169 173 3.981071 ATCTGGTAGCAACAACAGCTA 57.019 42.857 0.00 0.00 43.25 3.32
175 179 3.009033 AGCTGGTTATCTGGTAGCAACAA 59.991 43.478 0.00 0.00 36.87 2.83
176 180 2.571653 AGCTGGTTATCTGGTAGCAACA 59.428 45.455 0.00 0.00 36.87 3.33
177 181 3.268023 AGCTGGTTATCTGGTAGCAAC 57.732 47.619 0.00 0.00 36.87 4.17
190 194 0.175531 GTTTGTGCCACAAGCTGGTT 59.824 50.000 16.04 0.00 42.99 3.67
212 216 4.423625 AAAGCTGAGGTATCCATGGTAC 57.576 45.455 12.58 12.96 0.00 3.34
216 220 3.406764 GGCTAAAGCTGAGGTATCCATG 58.593 50.000 1.39 0.00 41.70 3.66
217 221 3.778954 GGCTAAAGCTGAGGTATCCAT 57.221 47.619 1.39 0.00 41.70 3.41
237 241 0.877649 AGCATATGGTCGAGCTTGCG 60.878 55.000 22.44 11.94 35.34 4.85
246 250 2.604914 CGTCACACTTGAGCATATGGTC 59.395 50.000 24.74 24.74 42.48 4.02
252 256 2.232208 TCAGATCGTCACACTTGAGCAT 59.768 45.455 0.00 0.00 30.10 3.79
258 262 1.546476 GGAGGTCAGATCGTCACACTT 59.454 52.381 0.00 0.00 0.00 3.16
275 281 1.190833 CCATCCCGATCCCTCTGGAG 61.191 65.000 0.00 0.00 46.08 3.86
280 286 2.427753 GTGCCATCCCGATCCCTC 59.572 66.667 0.00 0.00 0.00 4.30
289 295 1.225704 CTCTTCCCTGGTGCCATCC 59.774 63.158 0.00 0.00 0.00 3.51
293 299 1.615424 TACCCTCTTCCCTGGTGCC 60.615 63.158 0.00 0.00 33.55 5.01
294 300 1.627297 CCTACCCTCTTCCCTGGTGC 61.627 65.000 0.00 0.00 33.55 5.01
303 309 3.310731 CCCTTTCCTCTACCTACCCTCTT 60.311 52.174 0.00 0.00 0.00 2.85
308 314 2.396608 GTCCCCTTTCCTCTACCTACC 58.603 57.143 0.00 0.00 0.00 3.18
310 316 1.925255 TCGTCCCCTTTCCTCTACCTA 59.075 52.381 0.00 0.00 0.00 3.08
318 324 0.036294 CCAAGTCTCGTCCCCTTTCC 60.036 60.000 0.00 0.00 0.00 3.13
343 349 5.641783 TGTTCTCTGTCTCTCATCTTCTG 57.358 43.478 0.00 0.00 0.00 3.02
420 431 0.097499 GCGGCGTGTGGGTATTTAAC 59.903 55.000 9.37 0.00 0.00 2.01
463 474 5.622041 ACACATAATTTTAACACGTGCGAAC 59.378 36.000 17.22 0.00 0.00 3.95
467 478 5.375717 TCGACACATAATTTTAACACGTGC 58.624 37.500 17.22 0.00 0.00 5.34
487 498 5.684184 GCACAACTCGTACACATATATTCGA 59.316 40.000 0.00 0.00 0.00 3.71
488 499 5.685954 AGCACAACTCGTACACATATATTCG 59.314 40.000 0.00 0.00 0.00 3.34
489 500 7.149176 CGTAGCACAACTCGTACACATATATTC 60.149 40.741 0.00 0.00 0.00 1.75
492 503 5.504392 CGTAGCACAACTCGTACACATATA 58.496 41.667 0.00 0.00 0.00 0.86
503 514 2.480845 AGTTCAACCGTAGCACAACTC 58.519 47.619 0.00 0.00 0.00 3.01
514 525 3.680937 TCCGCTAATTACAAGTTCAACCG 59.319 43.478 0.00 0.00 0.00 4.44
515 526 4.094442 CCTCCGCTAATTACAAGTTCAACC 59.906 45.833 0.00 0.00 0.00 3.77
519 610 2.612672 GCCCTCCGCTAATTACAAGTTC 59.387 50.000 0.00 0.00 0.00 3.01
537 628 2.789409 ATGACTCAAACACCTAGCCC 57.211 50.000 0.00 0.00 0.00 5.19
538 629 3.933332 GTGTATGACTCAAACACCTAGCC 59.067 47.826 0.00 0.00 38.02 3.93
547 638 6.626302 TCATATCACACGTGTATGACTCAAA 58.374 36.000 22.90 1.98 33.24 2.69
560 652 9.478019 GTTTGAAGTCTATTTTCATATCACACG 57.522 33.333 0.00 0.00 34.76 4.49
574 666 9.555727 TTAGCTTACAACTTGTTTGAAGTCTAT 57.444 29.630 0.00 0.00 38.73 1.98
637 752 1.149361 TTTGACCACTGCGTCACGAC 61.149 55.000 0.00 0.00 42.37 4.34
638 753 0.874175 CTTTGACCACTGCGTCACGA 60.874 55.000 0.00 0.00 42.37 4.35
641 756 1.436195 GCACTTTGACCACTGCGTCA 61.436 55.000 0.00 0.00 40.98 4.35
643 758 1.153168 AGCACTTTGACCACTGCGT 60.153 52.632 0.00 0.00 34.69 5.24
653 768 5.783100 ACAACAAATCAAACAGCACTTTG 57.217 34.783 0.72 0.72 33.98 2.77
654 769 6.799926 AAACAACAAATCAAACAGCACTTT 57.200 29.167 0.00 0.00 0.00 2.66
658 773 5.702670 TCCAAAAACAACAAATCAAACAGCA 59.297 32.000 0.00 0.00 0.00 4.41
660 775 7.750014 CCTTTCCAAAAACAACAAATCAAACAG 59.250 33.333 0.00 0.00 0.00 3.16
669 784 5.423610 TGATCCTCCTTTCCAAAAACAACAA 59.576 36.000 0.00 0.00 0.00 2.83
670 785 4.959210 TGATCCTCCTTTCCAAAAACAACA 59.041 37.500 0.00 0.00 0.00 3.33
671 786 5.289595 GTGATCCTCCTTTCCAAAAACAAC 58.710 41.667 0.00 0.00 0.00 3.32
674 789 3.258372 GGGTGATCCTCCTTTCCAAAAAC 59.742 47.826 4.44 0.00 0.00 2.43
675 790 3.506398 GGGTGATCCTCCTTTCCAAAAA 58.494 45.455 4.44 0.00 0.00 1.94
676 791 2.225267 GGGGTGATCCTCCTTTCCAAAA 60.225 50.000 4.44 0.00 35.33 2.44
677 792 1.357761 GGGGTGATCCTCCTTTCCAAA 59.642 52.381 4.44 0.00 35.33 3.28
678 793 0.999712 GGGGTGATCCTCCTTTCCAA 59.000 55.000 4.44 0.00 35.33 3.53
679 794 2.709992 GGGGTGATCCTCCTTTCCA 58.290 57.895 4.44 0.00 35.33 3.53
694 809 4.883354 GAATGCAGAGGCCGGGGG 62.883 72.222 2.18 0.00 40.13 5.40
696 811 3.680620 TTCGAATGCAGAGGCCGGG 62.681 63.158 2.18 0.00 40.13 5.73
698 813 0.740868 TCTTTCGAATGCAGAGGCCG 60.741 55.000 0.00 0.00 40.13 6.13
699 814 1.332997 CATCTTTCGAATGCAGAGGCC 59.667 52.381 0.00 0.00 40.13 5.19
700 815 1.268437 GCATCTTTCGAATGCAGAGGC 60.268 52.381 16.38 16.38 40.72 4.70
701 816 2.011947 TGCATCTTTCGAATGCAGAGG 58.988 47.619 18.39 12.12 45.14 3.69
706 821 1.118033 CGCATGCATCTTTCGAATGC 58.882 50.000 19.57 13.93 40.14 3.56
708 823 1.331756 GACCGCATGCATCTTTCGAAT 59.668 47.619 19.57 0.00 0.00 3.34
709 824 0.726827 GACCGCATGCATCTTTCGAA 59.273 50.000 19.57 0.00 0.00 3.71
712 827 3.969117 TTATGACCGCATGCATCTTTC 57.031 42.857 19.57 6.30 35.94 2.62
715 830 2.032054 CGTTTTATGACCGCATGCATCT 59.968 45.455 19.57 7.21 35.94 2.90
716 831 2.223249 ACGTTTTATGACCGCATGCATC 60.223 45.455 19.57 14.88 35.94 3.91
717 832 1.742831 ACGTTTTATGACCGCATGCAT 59.257 42.857 19.57 4.56 35.94 3.96
718 833 1.160989 ACGTTTTATGACCGCATGCA 58.839 45.000 19.57 0.00 35.94 3.96
719 834 1.910819 CAACGTTTTATGACCGCATGC 59.089 47.619 7.91 7.91 35.94 4.06
720 835 3.196007 ACAACGTTTTATGACCGCATG 57.804 42.857 0.00 0.00 35.94 4.06
721 836 3.907894 AACAACGTTTTATGACCGCAT 57.092 38.095 0.00 0.00 38.54 4.73
722 837 3.064958 TCAAACAACGTTTTATGACCGCA 59.935 39.130 0.00 0.00 0.00 5.69
723 838 3.619729 TCAAACAACGTTTTATGACCGC 58.380 40.909 0.00 0.00 0.00 5.68
724 839 4.615121 CCATCAAACAACGTTTTATGACCG 59.385 41.667 12.92 0.00 0.00 4.79
725 840 4.384547 GCCATCAAACAACGTTTTATGACC 59.615 41.667 12.92 3.46 0.00 4.02
729 844 7.653647 TCTAAAGCCATCAAACAACGTTTTAT 58.346 30.769 0.00 0.00 0.00 1.40
730 845 7.028926 TCTAAAGCCATCAAACAACGTTTTA 57.971 32.000 0.00 0.00 0.00 1.52
731 846 5.897050 TCTAAAGCCATCAAACAACGTTTT 58.103 33.333 0.00 0.00 0.00 2.43
732 847 5.507315 CCTCTAAAGCCATCAAACAACGTTT 60.507 40.000 0.00 0.00 0.00 3.60
733 848 4.023193 CCTCTAAAGCCATCAAACAACGTT 60.023 41.667 0.00 0.00 0.00 3.99
736 851 3.367395 GCCCTCTAAAGCCATCAAACAAC 60.367 47.826 0.00 0.00 0.00 3.32
737 852 2.825532 GCCCTCTAAAGCCATCAAACAA 59.174 45.455 0.00 0.00 0.00 2.83
740 855 3.456380 AAGCCCTCTAAAGCCATCAAA 57.544 42.857 0.00 0.00 0.00 2.69
741 856 4.796110 ATAAGCCCTCTAAAGCCATCAA 57.204 40.909 0.00 0.00 0.00 2.57
742 857 5.547666 TGATATAAGCCCTCTAAAGCCATCA 59.452 40.000 0.00 0.00 0.00 3.07
744 859 5.045286 CCTGATATAAGCCCTCTAAAGCCAT 60.045 44.000 0.00 0.00 0.00 4.40
746 861 4.287326 ACCTGATATAAGCCCTCTAAAGCC 59.713 45.833 0.00 0.00 0.00 4.35
747 862 5.491323 ACCTGATATAAGCCCTCTAAAGC 57.509 43.478 0.00 0.00 0.00 3.51
765 880 9.533253 CAGAGGCCAAAATAAATAAATAACCTG 57.467 33.333 5.01 0.00 0.00 4.00
766 881 8.204160 GCAGAGGCCAAAATAAATAAATAACCT 58.796 33.333 5.01 0.00 0.00 3.50
767 882 7.984617 TGCAGAGGCCAAAATAAATAAATAACC 59.015 33.333 5.01 0.00 40.13 2.85
769 884 9.598517 CTTGCAGAGGCCAAAATAAATAAATAA 57.401 29.630 5.01 0.00 40.13 1.40
770 885 8.757877 ACTTGCAGAGGCCAAAATAAATAAATA 58.242 29.630 5.01 0.00 40.13 1.40
771 886 7.623630 ACTTGCAGAGGCCAAAATAAATAAAT 58.376 30.769 5.01 0.00 40.13 1.40
772 887 7.003402 ACTTGCAGAGGCCAAAATAAATAAA 57.997 32.000 5.01 0.00 40.13 1.40
774 889 7.896383 ATACTTGCAGAGGCCAAAATAAATA 57.104 32.000 5.01 0.00 40.13 1.40
775 890 6.796785 ATACTTGCAGAGGCCAAAATAAAT 57.203 33.333 5.01 0.00 40.13 1.40
776 891 7.559533 TGATATACTTGCAGAGGCCAAAATAAA 59.440 33.333 5.01 0.00 40.13 1.40
778 893 6.600388 TGATATACTTGCAGAGGCCAAAATA 58.400 36.000 5.01 0.00 40.13 1.40
779 894 5.448654 TGATATACTTGCAGAGGCCAAAAT 58.551 37.500 5.01 0.00 40.13 1.82
780 895 4.854173 TGATATACTTGCAGAGGCCAAAA 58.146 39.130 5.01 0.00 40.13 2.44
782 897 3.181451 CCTGATATACTTGCAGAGGCCAA 60.181 47.826 5.01 0.00 40.13 4.52
783 898 2.369860 CCTGATATACTTGCAGAGGCCA 59.630 50.000 5.01 0.00 40.13 5.36
784 899 2.370189 ACCTGATATACTTGCAGAGGCC 59.630 50.000 0.00 0.00 40.13 5.19
789 904 9.307121 GCACTATATAACCTGATATACTTGCAG 57.693 37.037 0.00 0.00 33.32 4.41
790 905 8.811994 TGCACTATATAACCTGATATACTTGCA 58.188 33.333 9.13 9.13 36.69 4.08
791 906 9.088512 GTGCACTATATAACCTGATATACTTGC 57.911 37.037 10.32 0.00 33.49 4.01
795 910 8.967918 TCCTGTGCACTATATAACCTGATATAC 58.032 37.037 19.41 0.00 0.00 1.47
815 1804 2.031012 TCGTGCTTGCCTCCTGTG 59.969 61.111 0.00 0.00 0.00 3.66
820 1809 2.049063 ACGTCTCGTGCTTGCCTC 60.049 61.111 0.00 0.00 39.18 4.70
824 1813 1.846648 GTGTGACGTCTCGTGCTTG 59.153 57.895 17.92 0.00 41.37 4.01
854 1953 8.744652 GCTACCACTCATAGTCTCATACATTAT 58.255 37.037 0.00 0.00 0.00 1.28
856 1955 6.551227 TGCTACCACTCATAGTCTCATACATT 59.449 38.462 0.00 0.00 0.00 2.71
859 1958 5.048364 CCTGCTACCACTCATAGTCTCATAC 60.048 48.000 0.00 0.00 0.00 2.39
860 1959 5.073428 CCTGCTACCACTCATAGTCTCATA 58.927 45.833 0.00 0.00 0.00 2.15
861 1960 3.894427 CCTGCTACCACTCATAGTCTCAT 59.106 47.826 0.00 0.00 0.00 2.90
862 1961 3.291584 CCTGCTACCACTCATAGTCTCA 58.708 50.000 0.00 0.00 0.00 3.27
864 1963 3.390175 ACCTGCTACCACTCATAGTCT 57.610 47.619 0.00 0.00 0.00 3.24
866 1965 2.950309 CGTACCTGCTACCACTCATAGT 59.050 50.000 0.00 0.00 0.00 2.12
867 1966 2.950309 ACGTACCTGCTACCACTCATAG 59.050 50.000 0.00 0.00 0.00 2.23
958 2068 0.100682 GGCTACTCGCTCAACATCGA 59.899 55.000 0.00 0.00 39.13 3.59
969 2079 0.874390 TGCTTTGCTTTGGCTACTCG 59.126 50.000 0.00 0.00 39.59 4.18
976 2086 2.476821 CTTCCTGTTGCTTTGCTTTGG 58.523 47.619 0.00 0.00 0.00 3.28
1029 2144 2.440796 CTCGCCCACATGCCCAAT 60.441 61.111 0.00 0.00 0.00 3.16
1050 2165 4.634703 TGCACCCGCACCACGAAT 62.635 61.111 0.00 0.00 45.36 3.34
1226 2341 0.739561 GAAGGCCTCGTCGATGTACT 59.260 55.000 5.23 0.00 0.00 2.73
1317 2432 2.588146 CTACCGTGCCGTCGACGAAT 62.588 60.000 37.65 17.86 43.02 3.34
1328 2443 1.202651 AGCAATATGGACCTACCGTGC 60.203 52.381 0.00 0.00 42.61 5.34
1339 2454 6.773638 ACAGGGAGAGTAATAAGCAATATGG 58.226 40.000 0.00 0.00 0.00 2.74
1344 2459 6.374417 AGAAACAGGGAGAGTAATAAGCAA 57.626 37.500 0.00 0.00 0.00 3.91
1345 2460 6.374417 AAGAAACAGGGAGAGTAATAAGCA 57.626 37.500 0.00 0.00 0.00 3.91
1346 2461 8.966069 ATTAAGAAACAGGGAGAGTAATAAGC 57.034 34.615 0.00 0.00 0.00 3.09
1350 2465 8.706521 GGAGTATTAAGAAACAGGGAGAGTAAT 58.293 37.037 0.00 0.00 0.00 1.89
1351 2466 7.125356 GGGAGTATTAAGAAACAGGGAGAGTAA 59.875 40.741 0.00 0.00 0.00 2.24
1352 2467 6.610425 GGGAGTATTAAGAAACAGGGAGAGTA 59.390 42.308 0.00 0.00 0.00 2.59
1353 2468 5.425862 GGGAGTATTAAGAAACAGGGAGAGT 59.574 44.000 0.00 0.00 0.00 3.24
1354 2469 5.663556 AGGGAGTATTAAGAAACAGGGAGAG 59.336 44.000 0.00 0.00 0.00 3.20
1355 2470 5.600749 AGGGAGTATTAAGAAACAGGGAGA 58.399 41.667 0.00 0.00 0.00 3.71
1356 2471 5.163290 GGAGGGAGTATTAAGAAACAGGGAG 60.163 48.000 0.00 0.00 0.00 4.30
1357 2472 4.720273 GGAGGGAGTATTAAGAAACAGGGA 59.280 45.833 0.00 0.00 0.00 4.20
1358 2473 4.473559 TGGAGGGAGTATTAAGAAACAGGG 59.526 45.833 0.00 0.00 0.00 4.45
1359 2474 5.693769 TGGAGGGAGTATTAAGAAACAGG 57.306 43.478 0.00 0.00 0.00 4.00
1360 2475 6.126768 TGGATGGAGGGAGTATTAAGAAACAG 60.127 42.308 0.00 0.00 0.00 3.16
1361 2476 5.729229 TGGATGGAGGGAGTATTAAGAAACA 59.271 40.000 0.00 0.00 0.00 2.83
1362 2477 6.248569 TGGATGGAGGGAGTATTAAGAAAC 57.751 41.667 0.00 0.00 0.00 2.78
1363 2478 6.901615 TTGGATGGAGGGAGTATTAAGAAA 57.098 37.500 0.00 0.00 0.00 2.52
1364 2479 6.901615 TTTGGATGGAGGGAGTATTAAGAA 57.098 37.500 0.00 0.00 0.00 2.52
1365 2480 6.901615 TTTTGGATGGAGGGAGTATTAAGA 57.098 37.500 0.00 0.00 0.00 2.10
1427 2542 9.657419 GTTGTCATCAAAATGAATAAAAGGGAT 57.343 29.630 0.00 0.00 43.42 3.85
1428 2543 8.869109 AGTTGTCATCAAAATGAATAAAAGGGA 58.131 29.630 0.00 0.00 43.42 4.20
1436 2551 8.739039 TCGGAAATAGTTGTCATCAAAATGAAT 58.261 29.630 0.00 0.00 43.42 2.57
1437 2552 8.105097 TCGGAAATAGTTGTCATCAAAATGAA 57.895 30.769 0.00 0.00 43.42 2.57
1438 2553 7.680442 TCGGAAATAGTTGTCATCAAAATGA 57.320 32.000 0.00 0.00 39.63 2.57
1439 2554 7.007367 CGTTCGGAAATAGTTGTCATCAAAATG 59.993 37.037 0.00 0.00 35.20 2.32
1440 2555 7.021196 CGTTCGGAAATAGTTGTCATCAAAAT 58.979 34.615 0.00 0.00 35.20 1.82
1441 2556 6.367421 CGTTCGGAAATAGTTGTCATCAAAA 58.633 36.000 0.00 0.00 35.20 2.44
1442 2557 5.106869 CCGTTCGGAAATAGTTGTCATCAAA 60.107 40.000 5.19 0.00 35.20 2.69
1443 2558 4.390603 CCGTTCGGAAATAGTTGTCATCAA 59.609 41.667 5.19 0.00 0.00 2.57
1444 2559 3.930229 CCGTTCGGAAATAGTTGTCATCA 59.070 43.478 5.19 0.00 0.00 3.07
1445 2560 4.178540 TCCGTTCGGAAATAGTTGTCATC 58.821 43.478 11.66 0.00 0.00 2.92
1446 2561 4.181578 CTCCGTTCGGAAATAGTTGTCAT 58.818 43.478 14.79 0.00 33.41 3.06
1447 2562 3.581755 CTCCGTTCGGAAATAGTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
1448 2563 2.928116 CCTCCGTTCGGAAATAGTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1449 2564 2.354403 CCCTCCGTTCGGAAATAGTTGT 60.354 50.000 14.79 0.00 33.41 3.32
1450 2565 2.093869 TCCCTCCGTTCGGAAATAGTTG 60.094 50.000 14.79 1.97 33.41 3.16
1451 2566 2.167900 CTCCCTCCGTTCGGAAATAGTT 59.832 50.000 14.79 0.00 33.41 2.24
1452 2567 1.755380 CTCCCTCCGTTCGGAAATAGT 59.245 52.381 14.79 0.00 33.41 2.12
1453 2568 1.755380 ACTCCCTCCGTTCGGAAATAG 59.245 52.381 14.79 13.09 33.41 1.73
1454 2569 1.856629 ACTCCCTCCGTTCGGAAATA 58.143 50.000 14.79 2.82 33.41 1.40
1455 2570 1.856629 TACTCCCTCCGTTCGGAAAT 58.143 50.000 14.79 2.39 33.41 2.17
1456 2571 1.856629 ATACTCCCTCCGTTCGGAAA 58.143 50.000 14.79 3.49 33.41 3.13
1457 2572 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
1458 2573 2.092212 ACTTATACTCCCTCCGTTCGGA 60.092 50.000 13.34 13.34 0.00 4.55
1459 2574 2.292845 GACTTATACTCCCTCCGTTCGG 59.707 54.545 4.74 4.74 0.00 4.30
1460 2575 3.212685 AGACTTATACTCCCTCCGTTCG 58.787 50.000 0.00 0.00 0.00 3.95
1461 2576 5.105432 ACAAAGACTTATACTCCCTCCGTTC 60.105 44.000 0.00 0.00 0.00 3.95
1462 2577 4.776308 ACAAAGACTTATACTCCCTCCGTT 59.224 41.667 0.00 0.00 0.00 4.44
1463 2578 4.351127 ACAAAGACTTATACTCCCTCCGT 58.649 43.478 0.00 0.00 0.00 4.69
1464 2579 5.826737 TCTACAAAGACTTATACTCCCTCCG 59.173 44.000 0.00 0.00 0.00 4.63
1465 2580 7.061688 TCTCTACAAAGACTTATACTCCCTCC 58.938 42.308 0.00 0.00 0.00 4.30
1466 2581 8.700439 ATCTCTACAAAGACTTATACTCCCTC 57.300 38.462 0.00 0.00 0.00 4.30
1467 2582 9.138596 GAATCTCTACAAAGACTTATACTCCCT 57.861 37.037 0.00 0.00 0.00 4.20
1468 2583 8.361889 GGAATCTCTACAAAGACTTATACTCCC 58.638 40.741 0.00 0.00 0.00 4.30
1469 2584 8.915036 TGGAATCTCTACAAAGACTTATACTCC 58.085 37.037 0.00 0.00 0.00 3.85
1470 2585 9.738832 GTGGAATCTCTACAAAGACTTATACTC 57.261 37.037 0.00 0.00 0.00 2.59
1471 2586 9.482175 AGTGGAATCTCTACAAAGACTTATACT 57.518 33.333 0.00 0.00 29.47 2.12
1476 2591 9.442047 CATTTAGTGGAATCTCTACAAAGACTT 57.558 33.333 0.00 0.00 29.47 3.01
1494 2609 4.982916 GCTCCGTATGTAGTCCATTTAGTG 59.017 45.833 0.00 0.00 34.86 2.74
1495 2610 4.647853 TGCTCCGTATGTAGTCCATTTAGT 59.352 41.667 0.00 0.00 34.86 2.24
1496 2611 5.196341 TGCTCCGTATGTAGTCCATTTAG 57.804 43.478 0.00 0.00 34.86 1.85
1497 2612 5.601583 TTGCTCCGTATGTAGTCCATTTA 57.398 39.130 0.00 0.00 34.86 1.40
1498 2613 4.481368 TTGCTCCGTATGTAGTCCATTT 57.519 40.909 0.00 0.00 34.86 2.32
1499 2614 4.481368 TTTGCTCCGTATGTAGTCCATT 57.519 40.909 0.00 0.00 34.86 3.16
1500 2615 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
1501 2616 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
1502 2617 6.913873 TTTATTTTGCTCCGTATGTAGTCC 57.086 37.500 0.00 0.00 0.00 3.85
1503 2618 8.138365 TCATTTATTTTGCTCCGTATGTAGTC 57.862 34.615 0.00 0.00 0.00 2.59
1504 2619 8.500753 TTCATTTATTTTGCTCCGTATGTAGT 57.499 30.769 0.00 0.00 0.00 2.73
1505 2620 9.599322 GATTCATTTATTTTGCTCCGTATGTAG 57.401 33.333 0.00 0.00 0.00 2.74
1506 2621 9.337396 AGATTCATTTATTTTGCTCCGTATGTA 57.663 29.630 0.00 0.00 0.00 2.29
1507 2622 8.225603 AGATTCATTTATTTTGCTCCGTATGT 57.774 30.769 0.00 0.00 0.00 2.29
1510 2625 9.997482 GTTTAGATTCATTTATTTTGCTCCGTA 57.003 29.630 0.00 0.00 0.00 4.02
1511 2626 8.739972 AGTTTAGATTCATTTATTTTGCTCCGT 58.260 29.630 0.00 0.00 0.00 4.69
1512 2627 9.573133 AAGTTTAGATTCATTTATTTTGCTCCG 57.427 29.630 0.00 0.00 0.00 4.63
1541 2656 9.822185 TCGCATAAAGATGTATATAGATGCATT 57.178 29.630 0.00 0.00 38.38 3.56
1542 2657 9.993454 ATCGCATAAAGATGTATATAGATGCAT 57.007 29.630 0.00 0.00 40.68 3.96
1543 2658 9.822185 AATCGCATAAAGATGTATATAGATGCA 57.178 29.630 0.00 0.00 38.65 3.96
1585 2700 7.985752 CCTCCGTTCCTAAATGTAAGTCTTTAT 59.014 37.037 0.00 0.00 0.00 1.40
1586 2701 7.325694 CCTCCGTTCCTAAATGTAAGTCTTTA 58.674 38.462 0.00 0.00 0.00 1.85
1587 2702 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1588 2703 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1589 2704 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
1590 2705 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
1591 2706 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
1592 2707 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
1593 2708 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
1594 2709 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
1595 2710 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
1596 2711 3.705072 ACTACTCCCTCCGTTCCTAAATG 59.295 47.826 0.00 0.00 0.00 2.32
1597 2712 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1598 2713 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1599 2714 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
1600 2715 3.525199 AGTAACTACTCCCTCCGTTCCTA 59.475 47.826 0.00 0.00 0.00 2.94
1601 2716 2.311243 AGTAACTACTCCCTCCGTTCCT 59.689 50.000 0.00 0.00 0.00 3.36
1602 2717 2.732763 AGTAACTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
1603 2718 4.522114 AGTAGTAACTACTCCCTCCGTTC 58.478 47.826 0.00 0.00 42.87 3.95
1604 2719 4.582973 AGTAGTAACTACTCCCTCCGTT 57.417 45.455 0.00 0.00 42.87 4.44
1605 2720 4.582973 AAGTAGTAACTACTCCCTCCGT 57.417 45.455 2.02 0.00 45.28 4.69
1606 2721 5.298026 GGTTAAGTAGTAACTACTCCCTCCG 59.702 48.000 2.02 0.00 45.28 4.63
1607 2722 5.596361 GGGTTAAGTAGTAACTACTCCCTCC 59.404 48.000 9.47 4.01 45.28 4.30
1608 2723 6.430864 AGGGTTAAGTAGTAACTACTCCCTC 58.569 44.000 14.90 1.76 46.81 4.30
1609 2724 6.414586 AGGGTTAAGTAGTAACTACTCCCT 57.585 41.667 14.90 14.90 45.83 4.20
1610 2725 6.096141 GTGAGGGTTAAGTAGTAACTACTCCC 59.904 46.154 9.15 9.15 45.28 4.30
1611 2726 6.660949 TGTGAGGGTTAAGTAGTAACTACTCC 59.339 42.308 2.02 0.16 45.28 3.85
1612 2727 7.693969 TGTGAGGGTTAAGTAGTAACTACTC 57.306 40.000 2.02 7.33 45.28 2.59
1614 2729 7.263496 CCATGTGAGGGTTAAGTAGTAACTAC 58.737 42.308 0.00 0.00 41.70 2.73
1615 2730 6.127253 GCCATGTGAGGGTTAAGTAGTAACTA 60.127 42.308 0.00 0.00 41.70 2.24
1616 2731 5.338137 GCCATGTGAGGGTTAAGTAGTAACT 60.338 44.000 0.00 0.00 41.70 2.24
1617 2732 4.874396 GCCATGTGAGGGTTAAGTAGTAAC 59.126 45.833 0.00 0.00 41.32 2.50
1620 2735 2.238898 GGCCATGTGAGGGTTAAGTAGT 59.761 50.000 0.00 0.00 0.00 2.73
1625 2744 1.427368 ACTTGGCCATGTGAGGGTTAA 59.573 47.619 22.61 0.00 0.00 2.01
1627 2746 0.188342 AACTTGGCCATGTGAGGGTT 59.812 50.000 23.79 5.35 0.00 4.11
1642 2761 9.554724 CTGCATTAAAAACGTATACATGAACTT 57.445 29.630 0.00 0.00 0.00 2.66
1643 2762 7.696453 GCTGCATTAAAAACGTATACATGAACT 59.304 33.333 0.00 0.00 0.00 3.01
1661 2785 0.448990 CGCTTTCAGCAGCTGCATTA 59.551 50.000 38.24 21.14 42.58 1.90
1672 2798 3.494336 CTGGCTCCGCGCTTTCAG 61.494 66.667 5.56 1.71 39.13 3.02
1695 2821 2.676822 TCGCCTGTCTCGCCTCTT 60.677 61.111 0.00 0.00 0.00 2.85
1782 2908 0.603707 CGCTGAAGAACTTGGCCTCA 60.604 55.000 3.32 0.00 0.00 3.86
1929 3055 1.735920 CAACGCGCAGAAGAGCTCT 60.736 57.895 11.45 11.45 38.53 4.09
1974 3100 2.033602 TCGACGAGCCTCTGGACA 59.966 61.111 0.00 0.00 0.00 4.02
1978 3104 0.317436 GCATACTCGACGAGCCTCTG 60.317 60.000 24.38 16.22 32.04 3.35
2090 3216 9.071276 ACAAAATACACTGATCACAGAAGAAAT 57.929 29.630 0.00 0.00 46.03 2.17
2093 3219 7.216494 TGACAAAATACACTGATCACAGAAGA 58.784 34.615 0.00 0.00 46.03 2.87
2094 3220 7.425577 TGACAAAATACACTGATCACAGAAG 57.574 36.000 0.00 0.00 46.03 2.85
2096 3222 7.800155 TTTGACAAAATACACTGATCACAGA 57.200 32.000 0.00 0.00 46.03 3.41
2120 3246 5.886960 AATTCGAGAGCACTGCTATTTTT 57.113 34.783 2.71 0.00 39.88 1.94
2124 3250 5.207110 ACATAATTCGAGAGCACTGCTAT 57.793 39.130 2.71 0.00 39.88 2.97
2127 3253 4.151335 CCATACATAATTCGAGAGCACTGC 59.849 45.833 0.00 0.00 0.00 4.40
2128 3254 5.532557 TCCATACATAATTCGAGAGCACTG 58.467 41.667 0.00 0.00 0.00 3.66
2143 3269 6.405731 CCACGTCCAAAATTTGATCCATACAT 60.406 38.462 7.37 0.00 0.00 2.29
2153 3280 5.053145 TCAAAATCCCACGTCCAAAATTTG 58.947 37.500 0.00 0.00 0.00 2.32
2155 3282 4.586841 TCTCAAAATCCCACGTCCAAAATT 59.413 37.500 0.00 0.00 0.00 1.82
2161 3288 2.178912 TGTCTCAAAATCCCACGTCC 57.821 50.000 0.00 0.00 0.00 4.79
2162 3289 2.420022 CCATGTCTCAAAATCCCACGTC 59.580 50.000 0.00 0.00 0.00 4.34
2163 3290 2.224769 ACCATGTCTCAAAATCCCACGT 60.225 45.455 0.00 0.00 0.00 4.49
2164 3291 2.162208 CACCATGTCTCAAAATCCCACG 59.838 50.000 0.00 0.00 0.00 4.94
2165 3292 2.094545 GCACCATGTCTCAAAATCCCAC 60.095 50.000 0.00 0.00 0.00 4.61
2166 3293 2.170166 GCACCATGTCTCAAAATCCCA 58.830 47.619 0.00 0.00 0.00 4.37
2167 3294 1.478105 GGCACCATGTCTCAAAATCCC 59.522 52.381 0.00 0.00 0.00 3.85
2194 3321 1.332686 TCGTCGGTCAGGATAACATCG 59.667 52.381 0.00 0.00 0.00 3.84
2221 3348 7.307396 GCACTATATTAAGCGTGAATCACATGT 60.307 37.037 14.24 0.00 37.77 3.21
2234 3361 6.201806 CAGTCCAGTCAAGCACTATATTAAGC 59.798 42.308 0.00 0.00 32.21 3.09
2274 3401 6.985188 ATGTTGCGTATTCACTCACTTATT 57.015 33.333 0.00 0.00 0.00 1.40
2304 3431 2.821991 ATAGCTGGCCAACGTCTATC 57.178 50.000 7.01 0.00 0.00 2.08
2334 3463 3.544698 ATACCGGTCTCTATCCACCAT 57.455 47.619 12.40 0.00 32.33 3.55
2349 3478 4.000988 GCACCCTGACCATAAATATACCG 58.999 47.826 0.00 0.00 0.00 4.02
2379 3508 4.473477 AATTACACTGACAGGTAGCCTC 57.527 45.455 7.51 0.00 0.00 4.70
2388 3517 6.146510 GGTCACGAATGTTAATTACACTGACA 59.853 38.462 0.00 5.16 40.19 3.58
2415 3544 2.800544 CTCATTTATTACTGCCCGACCG 59.199 50.000 0.00 0.00 0.00 4.79
2477 3606 5.036916 ACTAGGTTGACCAAGGATCCATAA 58.963 41.667 15.82 0.00 38.89 1.90
2705 5454 0.872388 GGTGTTAGCACAAGTTCCGG 59.128 55.000 12.05 0.00 46.95 5.14
2707 5456 4.577283 TGTAAAGGTGTTAGCACAAGTTCC 59.423 41.667 12.05 0.00 46.95 3.62
2741 5491 4.766404 AGTTGCTTTATTTCAGGGAACG 57.234 40.909 0.00 0.00 35.68 3.95
2773 5523 0.659957 GATCGCCATGCAAAGGAGAC 59.340 55.000 15.33 7.72 37.79 3.36
2823 5576 8.548025 TGAAATATTCATCTTCCAACAGGTCTA 58.452 33.333 0.00 0.00 34.08 2.59
2976 5786 1.468520 CCGCCAACGATCTCAAAATGT 59.531 47.619 0.00 0.00 43.93 2.71
2983 5793 1.776034 GATTGGCCGCCAACGATCTC 61.776 60.000 27.12 16.08 46.95 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.