Multiple sequence alignment - TraesCS5B01G016300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G016300 chr5B 100.000 2675 0 0 1 2675 15196076 15198750 0.000000e+00 4940.0
1 TraesCS5B01G016300 chr5B 81.395 688 113 11 998 1676 15191981 15191300 5.030000e-152 547.0
2 TraesCS5B01G016300 chr5B 79.386 684 131 7 998 1676 15050615 15051293 8.670000e-130 473.0
3 TraesCS5B01G016300 chr5B 81.690 497 86 4 1181 1676 15094163 15094655 2.480000e-110 409.0
4 TraesCS5B01G016300 chr5B 81.250 496 80 8 1182 1676 15075229 15075712 3.230000e-104 388.0
5 TraesCS5B01G016300 chr5B 98.639 147 2 0 1925 2071 612001702 612001848 7.350000e-66 261.0
6 TraesCS5B01G016300 chr5B 89.302 215 5 4 1922 2135 163987701 163987504 1.230000e-63 254.0
7 TraesCS5B01G016300 chr5B 83.256 215 6 10 1922 2135 708972462 708972647 1.270000e-38 171.0
8 TraesCS5B01G016300 chr5A 91.674 1177 77 12 674 1841 14416361 14417525 0.000000e+00 1611.0
9 TraesCS5B01G016300 chr5A 85.904 603 42 19 81 676 14415510 14416076 1.060000e-168 603.0
10 TraesCS5B01G016300 chr5A 82.507 686 109 9 998 1676 14255166 14254485 2.290000e-165 592.0
11 TraesCS5B01G016300 chr4B 91.447 760 24 16 1922 2675 594436415 594435691 0.000000e+00 1005.0
12 TraesCS5B01G016300 chr3D 95.264 549 20 3 2127 2675 593714384 593713842 0.000000e+00 865.0
13 TraesCS5B01G016300 chr2D 94.900 549 23 2 2127 2675 380136814 380136271 0.000000e+00 854.0
14 TraesCS5B01G016300 chr2D 89.119 193 11 6 1944 2135 367589240 367589423 5.760000e-57 231.0
15 TraesCS5B01G016300 chr7A 94.727 550 23 3 2127 2675 501037790 501037246 0.000000e+00 850.0
16 TraesCS5B01G016300 chr7A 94.107 543 19 5 2133 2675 652497670 652497141 0.000000e+00 813.0
17 TraesCS5B01G016300 chr6A 94.545 550 28 2 2127 2675 107062337 107061789 0.000000e+00 848.0
18 TraesCS5B01G016300 chr1A 94.161 548 19 5 2130 2675 534908266 534908802 0.000000e+00 822.0
19 TraesCS5B01G016300 chr7D 93.989 549 21 8 2127 2675 75159118 75159654 0.000000e+00 821.0
20 TraesCS5B01G016300 chr4D 93.571 560 17 9 2127 2675 39239591 39239040 0.000000e+00 817.0
21 TraesCS5B01G016300 chr2B 92.093 215 7 5 1922 2135 672070072 672069867 7.240000e-76 294.0
22 TraesCS5B01G016300 chr2B 89.302 215 7 9 1922 2135 280523567 280523368 3.420000e-64 255.0
23 TraesCS5B01G016300 chr2B 88.372 86 10 0 2050 2135 41488011 41488096 1.310000e-18 104.0
24 TraesCS5B01G016300 chr2B 86.047 86 9 2 2050 2135 200076681 200076599 3.670000e-14 89.8
25 TraesCS5B01G016300 chr2A 91.204 216 10 6 1922 2132 520605623 520605834 4.360000e-73 285.0
26 TraesCS5B01G016300 chr1B 89.767 215 6 4 1922 2135 526248493 526248692 7.350000e-66 261.0
27 TraesCS5B01G016300 chr6B 88.372 215 7 4 1922 2135 100965990 100965793 2.660000e-60 243.0
28 TraesCS5B01G016300 chr6B 83.721 215 5 14 1922 2135 40584643 40584828 2.740000e-40 176.0
29 TraesCS5B01G016300 chr7B 94.340 159 5 3 1922 2079 458533518 458533673 9.570000e-60 241.0
30 TraesCS5B01G016300 chr1D 84.651 215 4 12 1922 2135 470847138 470847324 1.260000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G016300 chr5B 15196076 15198750 2674 False 4940 4940 100.000 1 2675 1 chr5B.!!$F4 2674
1 TraesCS5B01G016300 chr5B 15191300 15191981 681 True 547 547 81.395 998 1676 1 chr5B.!!$R1 678
2 TraesCS5B01G016300 chr5B 15050615 15051293 678 False 473 473 79.386 998 1676 1 chr5B.!!$F1 678
3 TraesCS5B01G016300 chr5A 14415510 14417525 2015 False 1107 1611 88.789 81 1841 2 chr5A.!!$F1 1760
4 TraesCS5B01G016300 chr5A 14254485 14255166 681 True 592 592 82.507 998 1676 1 chr5A.!!$R1 678
5 TraesCS5B01G016300 chr4B 594435691 594436415 724 True 1005 1005 91.447 1922 2675 1 chr4B.!!$R1 753
6 TraesCS5B01G016300 chr3D 593713842 593714384 542 True 865 865 95.264 2127 2675 1 chr3D.!!$R1 548
7 TraesCS5B01G016300 chr2D 380136271 380136814 543 True 854 854 94.900 2127 2675 1 chr2D.!!$R1 548
8 TraesCS5B01G016300 chr7A 501037246 501037790 544 True 850 850 94.727 2127 2675 1 chr7A.!!$R1 548
9 TraesCS5B01G016300 chr7A 652497141 652497670 529 True 813 813 94.107 2133 2675 1 chr7A.!!$R2 542
10 TraesCS5B01G016300 chr6A 107061789 107062337 548 True 848 848 94.545 2127 2675 1 chr6A.!!$R1 548
11 TraesCS5B01G016300 chr1A 534908266 534908802 536 False 822 822 94.161 2130 2675 1 chr1A.!!$F1 545
12 TraesCS5B01G016300 chr7D 75159118 75159654 536 False 821 821 93.989 2127 2675 1 chr7D.!!$F1 548
13 TraesCS5B01G016300 chr4D 39239040 39239591 551 True 817 817 93.571 2127 2675 1 chr4D.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.109689 GTTCACCTCTCGACTGACGG 60.11 60.0 0.0 0.0 42.82 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2328 0.33812 AGAGTGAGGAAGAGGGAGGG 59.662 60.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.801350 TTTATTTCAGACTTCCAGCGATG 57.199 39.130 0.00 0.00 0.00 3.84
23 24 2.839486 TTTCAGACTTCCAGCGATGT 57.161 45.000 0.00 0.00 0.00 3.06
24 25 2.839486 TTCAGACTTCCAGCGATGTT 57.161 45.000 0.00 0.00 0.00 2.71
25 26 2.839486 TCAGACTTCCAGCGATGTTT 57.161 45.000 0.00 0.00 0.00 2.83
26 27 2.416747 TCAGACTTCCAGCGATGTTTG 58.583 47.619 0.00 0.00 32.52 2.93
27 28 2.146342 CAGACTTCCAGCGATGTTTGT 58.854 47.619 0.00 0.00 0.00 2.83
28 29 2.549754 CAGACTTCCAGCGATGTTTGTT 59.450 45.455 0.00 0.00 0.00 2.83
29 30 2.808543 AGACTTCCAGCGATGTTTGTTC 59.191 45.455 0.00 0.00 0.00 3.18
30 31 2.548057 GACTTCCAGCGATGTTTGTTCA 59.452 45.455 0.00 0.00 0.00 3.18
31 32 2.549754 ACTTCCAGCGATGTTTGTTCAG 59.450 45.455 0.00 0.00 0.00 3.02
32 33 2.254546 TCCAGCGATGTTTGTTCAGT 57.745 45.000 0.00 0.00 0.00 3.41
33 34 1.872952 TCCAGCGATGTTTGTTCAGTG 59.127 47.619 0.00 0.00 0.00 3.66
34 35 1.872952 CCAGCGATGTTTGTTCAGTGA 59.127 47.619 0.00 0.00 0.00 3.41
35 36 2.290367 CCAGCGATGTTTGTTCAGTGAA 59.710 45.455 0.08 0.08 0.00 3.18
36 37 3.243035 CCAGCGATGTTTGTTCAGTGAAA 60.243 43.478 7.25 0.00 0.00 2.69
37 38 3.970610 CAGCGATGTTTGTTCAGTGAAAG 59.029 43.478 7.25 0.00 0.00 2.62
38 39 3.876914 AGCGATGTTTGTTCAGTGAAAGA 59.123 39.130 7.25 0.00 0.00 2.52
39 40 4.335315 AGCGATGTTTGTTCAGTGAAAGAA 59.665 37.500 7.25 2.67 0.00 2.52
40 41 4.672413 GCGATGTTTGTTCAGTGAAAGAAG 59.328 41.667 7.25 0.00 0.00 2.85
41 42 5.504010 GCGATGTTTGTTCAGTGAAAGAAGA 60.504 40.000 7.25 4.61 0.00 2.87
42 43 5.904080 CGATGTTTGTTCAGTGAAAGAAGAC 59.096 40.000 7.25 3.07 0.00 3.01
43 44 5.216566 TGTTTGTTCAGTGAAAGAAGACG 57.783 39.130 7.25 0.00 0.00 4.18
44 45 4.693566 TGTTTGTTCAGTGAAAGAAGACGT 59.306 37.500 7.25 0.00 0.00 4.34
45 46 5.180492 TGTTTGTTCAGTGAAAGAAGACGTT 59.820 36.000 7.25 0.00 0.00 3.99
46 47 5.464965 TTGTTCAGTGAAAGAAGACGTTC 57.535 39.130 7.25 0.00 35.64 3.95
47 48 4.500127 TGTTCAGTGAAAGAAGACGTTCA 58.500 39.130 7.25 0.00 40.82 3.18
53 54 3.978687 TGAAAGAAGACGTTCACCTCTC 58.021 45.455 0.00 0.00 38.95 3.20
54 55 2.708386 AAGAAGACGTTCACCTCTCG 57.292 50.000 0.00 0.00 34.82 4.04
55 56 1.893544 AGAAGACGTTCACCTCTCGA 58.106 50.000 0.00 0.00 34.82 4.04
56 57 1.536331 AGAAGACGTTCACCTCTCGAC 59.464 52.381 0.00 0.00 34.82 4.20
57 58 1.536331 GAAGACGTTCACCTCTCGACT 59.464 52.381 0.00 0.00 32.36 4.18
58 59 0.875728 AGACGTTCACCTCTCGACTG 59.124 55.000 0.00 0.00 0.00 3.51
59 60 0.873054 GACGTTCACCTCTCGACTGA 59.127 55.000 0.00 0.00 0.00 3.41
60 61 0.592148 ACGTTCACCTCTCGACTGAC 59.408 55.000 0.00 0.00 0.00 3.51
61 62 0.452950 CGTTCACCTCTCGACTGACG 60.453 60.000 0.00 0.00 44.09 4.35
62 63 0.109689 GTTCACCTCTCGACTGACGG 60.110 60.000 0.00 0.00 42.82 4.79
63 64 1.241990 TTCACCTCTCGACTGACGGG 61.242 60.000 0.00 0.00 44.81 5.28
64 65 3.063084 ACCTCTCGACTGACGGGC 61.063 66.667 0.00 0.00 42.91 6.13
70 71 4.554363 CGACTGACGGGCGCCTAG 62.554 72.222 28.56 22.69 40.63 3.02
71 72 3.138798 GACTGACGGGCGCCTAGA 61.139 66.667 28.56 7.11 0.00 2.43
72 73 3.412879 GACTGACGGGCGCCTAGAC 62.413 68.421 28.56 20.37 0.00 2.59
73 74 3.449227 CTGACGGGCGCCTAGACA 61.449 66.667 28.56 23.56 0.00 3.41
74 75 2.758327 TGACGGGCGCCTAGACAT 60.758 61.111 28.56 5.30 0.00 3.06
75 76 2.279517 GACGGGCGCCTAGACATG 60.280 66.667 28.56 9.94 0.00 3.21
76 77 2.758327 ACGGGCGCCTAGACATGA 60.758 61.111 28.56 0.00 0.00 3.07
77 78 2.292794 GACGGGCGCCTAGACATGAA 62.293 60.000 28.56 0.00 0.00 2.57
78 79 1.153449 CGGGCGCCTAGACATGAAA 60.153 57.895 28.56 0.00 0.00 2.69
79 80 0.532862 CGGGCGCCTAGACATGAAAT 60.533 55.000 28.56 0.00 0.00 2.17
87 88 5.107453 GCGCCTAGACATGAAATATGTGTAC 60.107 44.000 0.00 0.00 31.52 2.90
89 90 6.144563 CGCCTAGACATGAAATATGTGTACTG 59.855 42.308 0.00 0.00 31.52 2.74
122 123 1.611261 CTCCCCCGGTACAGTTCCA 60.611 63.158 0.00 0.00 0.00 3.53
150 151 6.861572 GCCATGTAAGAAGTTCCACTAAAAAC 59.138 38.462 0.00 0.00 0.00 2.43
222 223 6.402226 CGGTTTCAACTCTCTTTATACTTGGC 60.402 42.308 0.00 0.00 0.00 4.52
223 224 6.430000 GGTTTCAACTCTCTTTATACTTGGCA 59.570 38.462 0.00 0.00 0.00 4.92
238 239 2.816204 TGGCACAAACAATGACCATG 57.184 45.000 0.00 0.00 35.04 3.66
239 240 2.314246 TGGCACAAACAATGACCATGA 58.686 42.857 0.00 0.00 35.04 3.07
240 241 2.296752 TGGCACAAACAATGACCATGAG 59.703 45.455 0.00 0.00 35.04 2.90
241 242 2.331194 GCACAAACAATGACCATGAGC 58.669 47.619 0.00 0.00 0.00 4.26
242 243 2.587956 CACAAACAATGACCATGAGCG 58.412 47.619 0.00 0.00 0.00 5.03
243 244 1.541147 ACAAACAATGACCATGAGCGG 59.459 47.619 0.00 0.00 0.00 5.52
244 245 1.541147 CAAACAATGACCATGAGCGGT 59.459 47.619 0.00 0.00 43.91 5.68
245 246 1.167851 AACAATGACCATGAGCGGTG 58.832 50.000 0.00 0.00 40.22 4.94
246 247 0.677731 ACAATGACCATGAGCGGTGG 60.678 55.000 0.00 3.88 40.22 4.61
247 248 1.750399 AATGACCATGAGCGGTGGC 60.750 57.895 0.00 0.00 40.22 5.01
248 249 2.482796 AATGACCATGAGCGGTGGCA 62.483 55.000 0.00 0.00 40.22 4.92
249 250 2.359850 GACCATGAGCGGTGGCAA 60.360 61.111 0.00 0.00 40.22 4.52
250 251 2.360350 ACCATGAGCGGTGGCAAG 60.360 61.111 0.00 0.00 43.41 4.01
251 252 2.360350 CCATGAGCGGTGGCAAGT 60.360 61.111 0.00 0.00 43.41 3.16
252 253 2.693762 CCATGAGCGGTGGCAAGTG 61.694 63.158 0.00 0.00 43.41 3.16
253 254 3.058160 ATGAGCGGTGGCAAGTGC 61.058 61.111 0.00 0.00 43.41 4.40
258 259 2.899044 GCGGTGGCAAGTGCGTAAA 61.899 57.895 0.00 0.00 43.26 2.01
272 273 6.806120 AGTGCGTAAAATTTCACAAAGTTC 57.194 33.333 9.60 0.00 32.25 3.01
278 279 7.858879 GCGTAAAATTTCACAAAGTTCCTCTAA 59.141 33.333 0.00 0.00 0.00 2.10
286 287 8.751302 TTCACAAAGTTCCTCTAAAAACAAAC 57.249 30.769 0.00 0.00 0.00 2.93
287 288 7.317390 TCACAAAGTTCCTCTAAAAACAAACC 58.683 34.615 0.00 0.00 0.00 3.27
292 293 5.296035 AGTTCCTCTAAAAACAAACCTCACG 59.704 40.000 0.00 0.00 0.00 4.35
295 296 4.318546 CCTCTAAAAACAAACCTCACGACG 60.319 45.833 0.00 0.00 0.00 5.12
325 326 1.287425 GGTCGGGTGATTTCTTAGCG 58.713 55.000 0.00 0.00 0.00 4.26
328 329 0.814010 CGGGTGATTTCTTAGCGGGG 60.814 60.000 0.00 0.00 0.00 5.73
331 332 1.664873 GTGATTTCTTAGCGGGGGAC 58.335 55.000 0.00 0.00 0.00 4.46
335 336 2.891191 TTTCTTAGCGGGGGACATTT 57.109 45.000 0.00 0.00 0.00 2.32
336 337 2.122783 TTCTTAGCGGGGGACATTTG 57.877 50.000 0.00 0.00 0.00 2.32
337 338 0.254747 TCTTAGCGGGGGACATTTGG 59.745 55.000 0.00 0.00 0.00 3.28
339 340 1.210967 CTTAGCGGGGGACATTTGGTA 59.789 52.381 0.00 0.00 0.00 3.25
340 341 1.287217 TAGCGGGGGACATTTGGTAA 58.713 50.000 0.00 0.00 0.00 2.85
341 342 0.629058 AGCGGGGGACATTTGGTAAT 59.371 50.000 0.00 0.00 0.00 1.89
342 343 1.006639 AGCGGGGGACATTTGGTAATT 59.993 47.619 0.00 0.00 0.00 1.40
343 344 2.242708 AGCGGGGGACATTTGGTAATTA 59.757 45.455 0.00 0.00 0.00 1.40
344 345 3.025262 GCGGGGGACATTTGGTAATTAA 58.975 45.455 0.00 0.00 0.00 1.40
372 373 5.932619 ATCAGGCCTAAAACCCATTTAAC 57.067 39.130 3.98 0.00 33.20 2.01
412 413 3.891366 CCTCAAAGGCCCATTGTTATAGG 59.109 47.826 16.18 12.29 0.00 2.57
413 414 4.536765 CTCAAAGGCCCATTGTTATAGGT 58.463 43.478 16.18 0.00 0.00 3.08
421 422 6.099269 AGGCCCATTGTTATAGGTATATACGG 59.901 42.308 0.00 0.00 0.00 4.02
434 435 9.959721 ATAGGTATATACGGCATTTTGAAGAAT 57.040 29.630 6.79 0.00 0.00 2.40
435 436 8.691661 AGGTATATACGGCATTTTGAAGAATT 57.308 30.769 6.79 0.00 0.00 2.17
522 523 0.670162 CAGAGAGGCAGAGAGCTAGC 59.330 60.000 6.62 6.62 44.79 3.42
525 526 0.395036 AGAGGCAGAGAGCTAGCGAA 60.395 55.000 9.55 0.00 44.79 4.70
579 580 2.233355 CGCTTATGTGCTTGAACGTTG 58.767 47.619 5.00 0.00 0.00 4.10
617 621 7.589954 GCAATACATTAATTAAAGGCTACCGTG 59.410 37.037 1.21 0.00 0.00 4.94
618 622 7.739498 ATACATTAATTAAAGGCTACCGTGG 57.261 36.000 1.21 0.00 0.00 4.94
633 637 1.624813 CCGTGGTTTCAGGGGTAAGTA 59.375 52.381 0.00 0.00 43.24 2.24
636 640 3.494749 CGTGGTTTCAGGGGTAAGTAACA 60.495 47.826 0.00 0.00 0.00 2.41
661 669 5.597182 TCTTCCAAGTATAGAGCAACCGTAT 59.403 40.000 0.00 0.00 0.00 3.06
700 995 4.436523 CGTTACAAAGTTCCTTCTTTTGCG 59.563 41.667 0.00 0.00 35.77 4.85
720 1015 2.031683 CGGGAATTAATGCTTGGACGTC 59.968 50.000 7.13 7.13 0.00 4.34
784 1079 7.515957 TTAGTGCTTATCTACTTGTAAACGC 57.484 36.000 0.00 0.00 0.00 4.84
787 1082 7.318141 AGTGCTTATCTACTTGTAAACGCTAA 58.682 34.615 0.00 0.00 0.00 3.09
899 1195 0.901827 TTAGCAATCCAGGTCGAGCA 59.098 50.000 18.15 0.00 0.00 4.26
923 1219 7.572539 GCAACAATTAGCCTATAAATACCGTCC 60.573 40.741 0.00 0.00 0.00 4.79
925 1221 4.789012 TTAGCCTATAAATACCGTCCGG 57.211 45.455 3.76 3.76 42.03 5.14
964 1260 1.156736 GGTCACTGCATACACACACC 58.843 55.000 0.00 0.00 0.00 4.16
968 1264 0.602638 ACTGCATACACACACCACCG 60.603 55.000 0.00 0.00 0.00 4.94
986 1282 0.664761 CGCCACCACCATCATCAATC 59.335 55.000 0.00 0.00 0.00 2.67
992 1288 3.506844 CACCACCATCATCAATCACAACA 59.493 43.478 0.00 0.00 0.00 3.33
993 1289 3.507233 ACCACCATCATCAATCACAACAC 59.493 43.478 0.00 0.00 0.00 3.32
994 1290 3.119388 CCACCATCATCAATCACAACACC 60.119 47.826 0.00 0.00 0.00 4.16
995 1291 3.091545 ACCATCATCAATCACAACACCC 58.908 45.455 0.00 0.00 0.00 4.61
996 1292 3.090790 CCATCATCAATCACAACACCCA 58.909 45.455 0.00 0.00 0.00 4.51
1051 1350 4.228567 TCACCGTCGCTGCAACCA 62.229 61.111 0.00 0.00 0.00 3.67
1161 1460 1.549203 GCCAGTTGTCCACAATCCAT 58.451 50.000 0.00 0.00 38.24 3.41
1164 1463 2.555006 CCAGTTGTCCACAATCCATCCA 60.555 50.000 0.00 0.00 38.24 3.41
1179 1478 2.700407 ATCCACCCGCCGGAACAAAA 62.700 55.000 5.05 0.00 35.77 2.44
1359 1658 2.414994 TCTACGACATCTCCCTCGTT 57.585 50.000 0.00 0.00 40.16 3.85
1542 1842 2.684843 GCCGAGTACACCGTCGACT 61.685 63.158 14.70 0.00 38.50 4.18
1602 1902 1.749334 GCCCAGACGCCTACAGCTAT 61.749 60.000 0.00 0.00 40.39 2.97
1619 1919 2.717530 CTATGCCTACGACGACAAGAC 58.282 52.381 0.00 0.00 0.00 3.01
1638 1938 3.946201 AGCACCTTCACCTGCGCT 61.946 61.111 9.73 0.00 38.51 5.92
1639 1939 2.047274 GCACCTTCACCTGCGCTA 60.047 61.111 9.73 0.00 0.00 4.26
1640 1940 2.103042 GCACCTTCACCTGCGCTAG 61.103 63.158 9.73 4.25 0.00 3.42
1659 1959 2.218603 AGCGGAACAAACTACCAACTG 58.781 47.619 0.00 0.00 0.00 3.16
1680 1980 1.392710 CCTTCTGCCCGTAGATCCGT 61.393 60.000 0.00 0.00 0.00 4.69
1690 1992 3.428180 CCCGTAGATCCGTCATCATCATC 60.428 52.174 0.00 0.00 33.29 2.92
1691 1993 3.428180 CCGTAGATCCGTCATCATCATCC 60.428 52.174 0.00 0.00 33.29 3.51
1696 1998 5.915175 AGATCCGTCATCATCATCCATATG 58.085 41.667 0.00 0.00 33.29 1.78
1698 2000 3.261390 TCCGTCATCATCATCCATATGCA 59.739 43.478 0.00 0.00 32.76 3.96
1699 2001 4.080751 TCCGTCATCATCATCCATATGCAT 60.081 41.667 3.79 3.79 32.76 3.96
1722 2024 4.970662 TGCATGCTAGGAACTGAATTTC 57.029 40.909 20.33 0.00 41.52 2.17
1725 2028 5.124457 TGCATGCTAGGAACTGAATTTCTTC 59.876 40.000 20.33 0.00 41.52 2.87
1735 2038 8.887717 AGGAACTGAATTTCTTCGATGAATAAG 58.112 33.333 13.82 11.13 37.18 1.73
1737 2040 9.695884 GAACTGAATTTCTTCGATGAATAAGTC 57.304 33.333 13.82 9.60 33.86 3.01
1747 2050 7.968956 TCTTCGATGAATAAGTCTGTACTTGAC 59.031 37.037 10.28 10.28 45.63 3.18
1749 2052 5.455849 CGATGAATAAGTCTGTACTTGACGG 59.544 44.000 11.79 0.00 45.63 4.79
1750 2053 5.970317 TGAATAAGTCTGTACTTGACGGA 57.030 39.130 11.79 6.49 45.63 4.69
1751 2054 6.335471 TGAATAAGTCTGTACTTGACGGAA 57.665 37.500 11.79 4.84 45.29 4.30
1752 2055 6.154445 TGAATAAGTCTGTACTTGACGGAAC 58.846 40.000 11.79 6.80 45.29 3.62
1753 2056 5.979288 ATAAGTCTGTACTTGACGGAACT 57.021 39.130 11.79 0.00 45.29 3.01
1755 2058 5.373981 AAGTCTGTACTTGACGGAACTAG 57.626 43.478 11.79 0.00 45.29 2.57
1756 2059 4.649692 AGTCTGTACTTGACGGAACTAGA 58.350 43.478 0.00 0.00 45.29 2.43
1757 2060 5.068636 AGTCTGTACTTGACGGAACTAGAA 58.931 41.667 0.00 0.00 45.29 2.10
1759 2062 6.208994 AGTCTGTACTTGACGGAACTAGAAAT 59.791 38.462 0.00 0.00 45.29 2.17
1764 2071 8.025445 TGTACTTGACGGAACTAGAAATAGAAC 58.975 37.037 0.00 0.00 0.00 3.01
1797 2104 6.264518 TGAAGGAATGAAGTAGTTTCCCAAAC 59.735 38.462 0.00 0.00 39.83 2.93
1800 2107 6.609616 AGGAATGAAGTAGTTTCCCAAACAAA 59.390 34.615 2.16 0.00 43.79 2.83
1801 2108 7.125053 AGGAATGAAGTAGTTTCCCAAACAAAA 59.875 33.333 2.16 0.00 43.79 2.44
1802 2109 7.931407 GGAATGAAGTAGTTTCCCAAACAAAAT 59.069 33.333 2.16 0.00 43.79 1.82
1803 2110 8.887036 AATGAAGTAGTTTCCCAAACAAAATC 57.113 30.769 2.16 0.00 43.79 2.17
1805 2112 8.073467 TGAAGTAGTTTCCCAAACAAAATCTT 57.927 30.769 2.16 0.00 43.79 2.40
1806 2113 7.978975 TGAAGTAGTTTCCCAAACAAAATCTTG 59.021 33.333 2.16 0.00 43.79 3.02
1808 2115 7.489160 AGTAGTTTCCCAAACAAAATCTTGTC 58.511 34.615 2.16 0.00 45.25 3.18
1811 2118 7.164803 AGTTTCCCAAACAAAATCTTGTCAAA 58.835 30.769 2.16 0.00 45.25 2.69
1812 2119 7.828717 AGTTTCCCAAACAAAATCTTGTCAAAT 59.171 29.630 2.16 0.00 45.25 2.32
1813 2120 9.103861 GTTTCCCAAACAAAATCTTGTCAAATA 57.896 29.630 0.00 0.00 45.25 1.40
1814 2121 8.885494 TTCCCAAACAAAATCTTGTCAAATAG 57.115 30.769 0.00 0.00 45.25 1.73
1841 2148 5.982465 TTACAAAACTGCAGCAAATTTCC 57.018 34.783 15.27 0.00 0.00 3.13
1842 2149 4.141233 ACAAAACTGCAGCAAATTTCCT 57.859 36.364 15.27 0.00 0.00 3.36
1843 2150 5.275067 ACAAAACTGCAGCAAATTTCCTA 57.725 34.783 15.27 0.00 0.00 2.94
1844 2151 5.669477 ACAAAACTGCAGCAAATTTCCTAA 58.331 33.333 15.27 0.00 0.00 2.69
1845 2152 5.523552 ACAAAACTGCAGCAAATTTCCTAAC 59.476 36.000 15.27 0.00 0.00 2.34
1846 2153 5.535753 AAACTGCAGCAAATTTCCTAACT 57.464 34.783 15.27 0.00 0.00 2.24
1847 2154 5.535753 AACTGCAGCAAATTTCCTAACTT 57.464 34.783 15.27 0.00 0.00 2.66
1848 2155 5.126396 ACTGCAGCAAATTTCCTAACTTC 57.874 39.130 15.27 0.00 0.00 3.01
1849 2156 4.829492 ACTGCAGCAAATTTCCTAACTTCT 59.171 37.500 15.27 0.00 0.00 2.85
1850 2157 5.302823 ACTGCAGCAAATTTCCTAACTTCTT 59.697 36.000 15.27 0.00 0.00 2.52
1851 2158 6.490040 ACTGCAGCAAATTTCCTAACTTCTTA 59.510 34.615 15.27 0.00 0.00 2.10
1852 2159 7.014230 ACTGCAGCAAATTTCCTAACTTCTTAA 59.986 33.333 15.27 0.00 0.00 1.85
1853 2160 7.721402 TGCAGCAAATTTCCTAACTTCTTAAA 58.279 30.769 0.00 0.00 0.00 1.52
1854 2161 8.367156 TGCAGCAAATTTCCTAACTTCTTAAAT 58.633 29.630 0.00 0.00 0.00 1.40
1855 2162 9.208022 GCAGCAAATTTCCTAACTTCTTAAATT 57.792 29.630 0.00 0.00 32.61 1.82
1865 2172 8.296713 TCCTAACTTCTTAAATTGAACATGTGC 58.703 33.333 0.00 0.00 0.00 4.57
1866 2173 6.991485 AACTTCTTAAATTGAACATGTGCG 57.009 33.333 0.00 0.00 0.00 5.34
1867 2174 6.312399 ACTTCTTAAATTGAACATGTGCGA 57.688 33.333 0.00 0.00 0.00 5.10
1868 2175 6.913170 ACTTCTTAAATTGAACATGTGCGAT 58.087 32.000 0.00 0.00 0.00 4.58
1869 2176 8.039603 ACTTCTTAAATTGAACATGTGCGATA 57.960 30.769 7.01 0.00 0.00 2.92
1870 2177 8.177663 ACTTCTTAAATTGAACATGTGCGATAG 58.822 33.333 7.01 1.78 0.00 2.08
1886 2193 2.351726 CGATAGCAACTTTCTTTCCCCG 59.648 50.000 0.00 0.00 0.00 5.73
1887 2194 3.606687 GATAGCAACTTTCTTTCCCCGA 58.393 45.455 0.00 0.00 0.00 5.14
1888 2195 2.586648 AGCAACTTTCTTTCCCCGAT 57.413 45.000 0.00 0.00 0.00 4.18
1889 2196 2.162681 AGCAACTTTCTTTCCCCGATG 58.837 47.619 0.00 0.00 0.00 3.84
1890 2197 1.202348 GCAACTTTCTTTCCCCGATGG 59.798 52.381 0.00 0.00 0.00 3.51
1891 2198 2.790433 CAACTTTCTTTCCCCGATGGA 58.210 47.619 0.00 0.00 43.18 3.41
1892 2199 3.356290 CAACTTTCTTTCCCCGATGGAT 58.644 45.455 0.00 0.00 44.66 3.41
1893 2200 4.523083 CAACTTTCTTTCCCCGATGGATA 58.477 43.478 0.00 0.00 44.66 2.59
1894 2201 4.152284 ACTTTCTTTCCCCGATGGATAC 57.848 45.455 0.00 0.00 44.66 2.24
1913 2220 7.255569 TGGATACACATAACACTAGAAGAACG 58.744 38.462 0.00 0.00 46.17 3.95
1914 2221 6.198591 GGATACACATAACACTAGAAGAACGC 59.801 42.308 0.00 0.00 0.00 4.84
1915 2222 5.135508 ACACATAACACTAGAAGAACGCT 57.864 39.130 0.00 0.00 0.00 5.07
1916 2223 5.162075 ACACATAACACTAGAAGAACGCTC 58.838 41.667 0.00 0.00 0.00 5.03
1917 2224 4.263209 CACATAACACTAGAAGAACGCTCG 59.737 45.833 0.00 0.00 0.00 5.03
1918 2225 4.082895 ACATAACACTAGAAGAACGCTCGT 60.083 41.667 0.00 0.00 0.00 4.18
1919 2226 2.333389 ACACTAGAAGAACGCTCGTG 57.667 50.000 0.00 0.00 0.00 4.35
1920 2227 0.985549 CACTAGAAGAACGCTCGTGC 59.014 55.000 0.00 0.00 0.00 5.34
1980 2287 8.667076 TTCTCATACATATCAAGTGACATTGG 57.333 34.615 0.00 0.00 0.00 3.16
1985 2292 1.453155 ATCAAGTGACATTGGCGACC 58.547 50.000 0.00 0.00 0.00 4.79
2021 2328 0.030773 TCTCACACACACACTCTCGC 59.969 55.000 0.00 0.00 0.00 5.03
2044 2351 2.242196 CTCCCTCTTCCTCACTCTCTCT 59.758 54.545 0.00 0.00 0.00 3.10
2056 2363 0.998945 CTCTCTCTCCCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
2057 2364 0.996762 TCTCTCTCCCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
2058 2365 0.998945 CTCTCTCCCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
2059 2366 0.996762 TCTCTCCCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2060 2367 0.998945 CTCTCCCCCTCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
2061 2368 0.996762 TCTCCCCCTCTCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2062 2369 0.998945 CTCCCCCTCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
2063 2370 0.996762 TCCCCCTCTCCCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2064 2371 0.998945 CCCCCTCTCCCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
2065 2372 0.478507 CCCCTCTCCCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
2066 2373 1.522900 CCCTCTCCCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
2067 2374 1.421646 CCCTCTCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
2068 2375 2.412591 CCTCTCCCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
2069 2376 2.370189 CCTCTCCCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
2070 2377 3.312890 CTCTCCCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
2071 2378 3.309296 TCTCCCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
2072 2379 2.370189 CTCCCTCTCTCTCTCTCTCTCC 59.630 59.091 0.00 0.00 0.00 3.71
2073 2380 1.421646 CCCTCTCTCTCTCTCTCTCCC 59.578 61.905 0.00 0.00 0.00 4.30
2074 2381 1.421646 CCTCTCTCTCTCTCTCTCCCC 59.578 61.905 0.00 0.00 0.00 4.81
2075 2382 1.421646 CTCTCTCTCTCTCTCTCCCCC 59.578 61.905 0.00 0.00 0.00 5.40
2076 2383 1.010793 TCTCTCTCTCTCTCTCCCCCT 59.989 57.143 0.00 0.00 0.00 4.79
2077 2384 1.421646 CTCTCTCTCTCTCTCCCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
2078 2385 1.010793 TCTCTCTCTCTCTCCCCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
2079 2386 1.421646 CTCTCTCTCTCTCCCCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
2080 2387 0.478507 CTCTCTCTCTCCCCCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
2081 2388 0.996762 TCTCTCTCTCCCCCTCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
2082 2389 0.998945 CTCTCTCTCCCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
2083 2390 0.996762 TCTCTCTCCCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
2084 2391 0.998945 CTCTCTCCCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
2085 2392 0.996762 TCTCTCCCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
2086 2393 0.998945 CTCTCCCCCTCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
2113 2420 7.548097 TCTCTCTCTAACACACAAACATATCC 58.452 38.462 0.00 0.00 0.00 2.59
2322 2653 7.394641 TCTCTCTCTCTAACACACACACATATT 59.605 37.037 0.00 0.00 0.00 1.28
2431 2762 2.597455 CCACCACAACTGAGGGAATTT 58.403 47.619 0.00 0.00 0.00 1.82
2520 2851 2.093306 TGTAACATTGGCGAGAGGTG 57.907 50.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.245531 ACATCGCTGGAAGTCTGAAATAAA 58.754 37.500 0.00 0.00 35.30 1.40
3 4 3.340814 ACATCGCTGGAAGTCTGAAAT 57.659 42.857 0.00 0.00 35.30 2.17
4 5 2.839486 ACATCGCTGGAAGTCTGAAA 57.161 45.000 0.00 0.00 35.30 2.69
5 6 2.807967 CAAACATCGCTGGAAGTCTGAA 59.192 45.455 0.00 0.00 35.30 3.02
8 9 2.550830 ACAAACATCGCTGGAAGTCT 57.449 45.000 0.00 0.00 35.30 3.24
9 10 2.548057 TGAACAAACATCGCTGGAAGTC 59.452 45.455 0.00 0.00 35.30 3.01
10 11 2.549754 CTGAACAAACATCGCTGGAAGT 59.450 45.455 0.00 0.00 35.30 3.01
11 12 2.549754 ACTGAACAAACATCGCTGGAAG 59.450 45.455 0.00 0.00 0.00 3.46
12 13 2.290367 CACTGAACAAACATCGCTGGAA 59.710 45.455 0.00 0.00 0.00 3.53
13 14 1.872952 CACTGAACAAACATCGCTGGA 59.127 47.619 0.00 0.00 0.00 3.86
14 15 1.872952 TCACTGAACAAACATCGCTGG 59.127 47.619 0.00 0.00 0.00 4.85
15 16 3.607422 TTCACTGAACAAACATCGCTG 57.393 42.857 0.00 0.00 0.00 5.18
16 17 3.876914 TCTTTCACTGAACAAACATCGCT 59.123 39.130 0.00 0.00 0.00 4.93
17 18 4.209452 TCTTTCACTGAACAAACATCGC 57.791 40.909 0.00 0.00 0.00 4.58
18 19 5.904080 GTCTTCTTTCACTGAACAAACATCG 59.096 40.000 0.00 0.00 0.00 3.84
19 20 5.904080 CGTCTTCTTTCACTGAACAAACATC 59.096 40.000 0.00 0.00 0.00 3.06
20 21 5.354234 ACGTCTTCTTTCACTGAACAAACAT 59.646 36.000 0.00 0.00 0.00 2.71
21 22 4.693566 ACGTCTTCTTTCACTGAACAAACA 59.306 37.500 0.00 0.00 0.00 2.83
22 23 5.217895 ACGTCTTCTTTCACTGAACAAAC 57.782 39.130 0.00 0.00 0.00 2.93
23 24 5.410132 TGAACGTCTTCTTTCACTGAACAAA 59.590 36.000 0.00 0.00 29.09 2.83
24 25 4.932799 TGAACGTCTTCTTTCACTGAACAA 59.067 37.500 0.00 0.00 29.09 2.83
25 26 4.328983 GTGAACGTCTTCTTTCACTGAACA 59.671 41.667 8.24 0.00 44.21 3.18
26 27 4.260253 GGTGAACGTCTTCTTTCACTGAAC 60.260 45.833 13.75 0.00 45.71 3.18
27 28 3.869246 GGTGAACGTCTTCTTTCACTGAA 59.131 43.478 13.75 0.00 45.71 3.02
28 29 3.132289 AGGTGAACGTCTTCTTTCACTGA 59.868 43.478 13.75 0.00 45.71 3.41
29 30 3.458189 AGGTGAACGTCTTCTTTCACTG 58.542 45.455 13.75 0.00 45.71 3.66
30 31 3.385111 AGAGGTGAACGTCTTCTTTCACT 59.615 43.478 13.75 2.76 45.71 3.41
31 32 3.718815 AGAGGTGAACGTCTTCTTTCAC 58.281 45.455 7.17 7.17 45.71 3.18
32 33 3.550233 CGAGAGGTGAACGTCTTCTTTCA 60.550 47.826 7.07 0.00 40.72 2.69
33 34 2.981140 CGAGAGGTGAACGTCTTCTTTC 59.019 50.000 7.07 0.00 40.72 2.62
34 35 2.621998 TCGAGAGGTGAACGTCTTCTTT 59.378 45.455 7.07 0.00 40.72 2.52
35 36 2.030981 GTCGAGAGGTGAACGTCTTCTT 60.031 50.000 7.07 0.00 40.72 2.52
36 37 1.536331 GTCGAGAGGTGAACGTCTTCT 59.464 52.381 7.07 0.00 40.72 2.85
37 38 1.536331 AGTCGAGAGGTGAACGTCTTC 59.464 52.381 7.07 2.70 40.72 2.87
38 39 1.267261 CAGTCGAGAGGTGAACGTCTT 59.733 52.381 7.07 0.00 40.72 3.01
39 40 0.875728 CAGTCGAGAGGTGAACGTCT 59.124 55.000 5.40 5.40 43.00 4.18
40 41 0.873054 TCAGTCGAGAGGTGAACGTC 59.127 55.000 0.00 0.00 0.00 4.34
41 42 0.592148 GTCAGTCGAGAGGTGAACGT 59.408 55.000 0.00 0.00 0.00 3.99
42 43 0.452950 CGTCAGTCGAGAGGTGAACG 60.453 60.000 0.00 0.00 42.86 3.95
43 44 0.109689 CCGTCAGTCGAGAGGTGAAC 60.110 60.000 0.00 0.00 42.86 3.18
44 45 1.241990 CCCGTCAGTCGAGAGGTGAA 61.242 60.000 0.00 0.00 42.86 3.18
45 46 1.674651 CCCGTCAGTCGAGAGGTGA 60.675 63.158 0.00 0.00 42.86 4.02
46 47 2.878429 CCCGTCAGTCGAGAGGTG 59.122 66.667 0.00 0.00 42.86 4.00
47 48 3.063084 GCCCGTCAGTCGAGAGGT 61.063 66.667 0.00 0.00 42.86 3.85
48 49 4.180946 CGCCCGTCAGTCGAGAGG 62.181 72.222 0.00 0.00 42.86 3.69
49 50 4.838486 GCGCCCGTCAGTCGAGAG 62.838 72.222 0.00 0.00 42.86 3.20
53 54 4.554363 CTAGGCGCCCGTCAGTCG 62.554 72.222 26.15 0.00 39.52 4.18
54 55 3.138798 TCTAGGCGCCCGTCAGTC 61.139 66.667 26.15 0.00 0.00 3.51
55 56 3.450115 GTCTAGGCGCCCGTCAGT 61.450 66.667 26.15 5.68 0.00 3.41
56 57 2.786495 ATGTCTAGGCGCCCGTCAG 61.786 63.158 26.15 15.59 0.00 3.51
57 58 2.758327 ATGTCTAGGCGCCCGTCA 60.758 61.111 26.15 18.64 0.00 4.35
58 59 2.279517 CATGTCTAGGCGCCCGTC 60.280 66.667 26.15 13.17 0.00 4.79
59 60 1.895020 TTTCATGTCTAGGCGCCCGT 61.895 55.000 26.15 8.44 0.00 5.28
60 61 0.532862 ATTTCATGTCTAGGCGCCCG 60.533 55.000 26.15 15.60 0.00 6.13
61 62 2.543777 TATTTCATGTCTAGGCGCCC 57.456 50.000 26.15 8.39 0.00 6.13
62 63 3.187227 CACATATTTCATGTCTAGGCGCC 59.813 47.826 21.89 21.89 0.00 6.53
63 64 3.809832 ACACATATTTCATGTCTAGGCGC 59.190 43.478 0.00 0.00 0.00 6.53
64 65 6.144563 CAGTACACATATTTCATGTCTAGGCG 59.855 42.308 0.00 0.00 0.00 5.52
65 66 7.210174 TCAGTACACATATTTCATGTCTAGGC 58.790 38.462 0.00 0.00 0.00 3.93
78 79 9.587772 GCGGATCTATTTTATCAGTACACATAT 57.412 33.333 0.00 0.00 0.00 1.78
79 80 8.803235 AGCGGATCTATTTTATCAGTACACATA 58.197 33.333 0.00 0.00 0.00 2.29
87 88 4.508662 GGGGAGCGGATCTATTTTATCAG 58.491 47.826 0.00 0.00 0.00 2.90
89 90 3.679083 CGGGGGAGCGGATCTATTTTATC 60.679 52.174 0.00 0.00 0.00 1.75
98 99 3.613689 GTACCGGGGGAGCGGATC 61.614 72.222 6.32 0.00 0.00 3.36
122 123 3.412386 GTGGAACTTCTTACATGGCTGT 58.588 45.455 0.00 0.00 39.49 4.40
192 193 3.553828 AAGAGAGTTGAAACCGGTTCA 57.446 42.857 22.53 17.00 44.74 3.18
199 200 7.041372 TGTGCCAAGTATAAAGAGAGTTGAAAC 60.041 37.037 0.00 0.00 30.11 2.78
200 201 6.995686 TGTGCCAAGTATAAAGAGAGTTGAAA 59.004 34.615 0.00 0.00 30.11 2.69
222 223 2.587956 CGCTCATGGTCATTGTTTGTG 58.412 47.619 0.00 0.00 0.00 3.33
223 224 1.541147 CCGCTCATGGTCATTGTTTGT 59.459 47.619 0.00 0.00 0.00 2.83
226 227 1.167851 CACCGCTCATGGTCATTGTT 58.832 50.000 0.00 0.00 41.38 2.83
228 229 1.996786 GCCACCGCTCATGGTCATTG 61.997 60.000 0.00 0.00 41.38 2.82
229 230 1.750399 GCCACCGCTCATGGTCATT 60.750 57.895 0.00 0.00 41.38 2.57
230 231 2.124570 GCCACCGCTCATGGTCAT 60.125 61.111 0.00 0.00 41.38 3.06
231 232 3.189376 TTGCCACCGCTCATGGTCA 62.189 57.895 0.00 0.00 41.38 4.02
232 233 2.359850 TTGCCACCGCTCATGGTC 60.360 61.111 0.00 0.00 41.38 4.02
233 234 2.360350 CTTGCCACCGCTCATGGT 60.360 61.111 0.00 0.00 45.21 3.55
234 235 2.360350 ACTTGCCACCGCTCATGG 60.360 61.111 0.00 0.00 40.50 3.66
235 236 2.872557 CACTTGCCACCGCTCATG 59.127 61.111 0.00 0.00 35.36 3.07
236 237 3.058160 GCACTTGCCACCGCTCAT 61.058 61.111 0.00 0.00 35.36 2.90
239 240 3.818121 TTACGCACTTGCCACCGCT 62.818 57.895 0.00 0.00 37.91 5.52
240 241 2.395367 TTTTACGCACTTGCCACCGC 62.395 55.000 0.00 0.00 37.91 5.68
241 242 0.239879 ATTTTACGCACTTGCCACCG 59.760 50.000 0.00 0.00 37.91 4.94
242 243 2.432206 AATTTTACGCACTTGCCACC 57.568 45.000 0.00 0.00 37.91 4.61
243 244 3.181575 GTGAAATTTTACGCACTTGCCAC 59.818 43.478 0.00 0.00 37.91 5.01
244 245 3.181486 TGTGAAATTTTACGCACTTGCCA 60.181 39.130 8.40 0.00 37.91 4.92
245 246 3.376540 TGTGAAATTTTACGCACTTGCC 58.623 40.909 8.40 0.00 37.91 4.52
246 247 5.005299 ACTTTGTGAAATTTTACGCACTTGC 59.995 36.000 8.40 0.00 37.78 4.01
247 248 6.567769 ACTTTGTGAAATTTTACGCACTTG 57.432 33.333 8.40 2.64 32.69 3.16
248 249 6.254804 GGAACTTTGTGAAATTTTACGCACTT 59.745 34.615 8.40 0.00 32.69 3.16
249 250 5.746721 GGAACTTTGTGAAATTTTACGCACT 59.253 36.000 8.40 0.00 32.69 4.40
250 251 5.746721 AGGAACTTTGTGAAATTTTACGCAC 59.253 36.000 8.40 4.96 27.25 5.34
251 252 5.897050 AGGAACTTTGTGAAATTTTACGCA 58.103 33.333 8.40 0.00 27.25 5.24
252 253 6.206498 AGAGGAACTTTGTGAAATTTTACGC 58.794 36.000 8.40 0.00 41.55 4.42
253 254 9.724839 TTTAGAGGAACTTTGTGAAATTTTACG 57.275 29.630 8.40 0.00 41.55 3.18
258 259 9.936759 TTGTTTTTAGAGGAACTTTGTGAAATT 57.063 25.926 0.00 0.00 41.55 1.82
272 273 4.318546 CGTCGTGAGGTTTGTTTTTAGAGG 60.319 45.833 0.00 0.00 0.00 3.69
278 279 3.835378 AAACGTCGTGAGGTTTGTTTT 57.165 38.095 17.06 0.00 44.57 2.43
286 287 3.702792 CGTCAAAAACGTCGTGAGG 57.297 52.632 0.00 0.00 46.42 3.86
295 296 0.028374 CACCCGACCACGTCAAAAAC 59.972 55.000 0.00 0.00 37.88 2.43
304 305 2.007608 GCTAAGAAATCACCCGACCAC 58.992 52.381 0.00 0.00 0.00 4.16
310 311 0.465642 CCCCCGCTAAGAAATCACCC 60.466 60.000 0.00 0.00 0.00 4.61
339 340 9.899661 GGGTTTTAGGCCTGATAATTTTTAATT 57.100 29.630 17.99 0.00 0.00 1.40
340 341 9.052365 TGGGTTTTAGGCCTGATAATTTTTAAT 57.948 29.630 17.99 0.00 0.00 1.40
341 342 8.437274 TGGGTTTTAGGCCTGATAATTTTTAA 57.563 30.769 17.99 0.00 0.00 1.52
342 343 8.616799 ATGGGTTTTAGGCCTGATAATTTTTA 57.383 30.769 17.99 0.00 0.00 1.52
343 344 6.943899 TGGGTTTTAGGCCTGATAATTTTT 57.056 33.333 17.99 0.00 0.00 1.94
344 345 7.509236 AATGGGTTTTAGGCCTGATAATTTT 57.491 32.000 17.99 0.00 0.00 1.82
372 373 9.369904 CCTTTGAGGTTTATCCAACAAATAATG 57.630 33.333 0.00 0.00 40.62 1.90
579 580 3.855689 ATGTATTGCCAAGTCTGTTGC 57.144 42.857 0.00 0.00 0.00 4.17
617 621 5.175388 AGATGTTACTTACCCCTGAAACC 57.825 43.478 0.00 0.00 0.00 3.27
618 622 5.646793 GGAAGATGTTACTTACCCCTGAAAC 59.353 44.000 0.00 0.00 0.00 2.78
629 633 8.079211 TGCTCTATACTTGGAAGATGTTACTT 57.921 34.615 0.00 0.00 0.00 2.24
633 637 6.116126 GGTTGCTCTATACTTGGAAGATGTT 58.884 40.000 0.00 0.00 0.00 2.71
636 640 4.406003 ACGGTTGCTCTATACTTGGAAGAT 59.594 41.667 0.00 0.00 0.00 2.40
700 995 3.013921 TGACGTCCAAGCATTAATTCCC 58.986 45.455 14.12 0.00 0.00 3.97
765 1060 8.426251 GCTATTAGCGTTTACAAGTAGATAAGC 58.574 37.037 0.00 0.00 0.00 3.09
779 1074 9.248291 CCAATTAATTCATTGCTATTAGCGTTT 57.752 29.630 10.94 1.76 46.26 3.60
784 1079 8.143193 TGGCACCAATTAATTCATTGCTATTAG 58.857 33.333 18.09 0.00 33.42 1.73
787 1082 6.482898 TGGCACCAATTAATTCATTGCTAT 57.517 33.333 18.09 0.00 33.42 2.97
824 1119 2.981805 CAACGTCATGCAGTTTGAATGG 59.018 45.455 0.00 0.00 34.10 3.16
882 1177 0.674895 GTTGCTCGACCTGGATTGCT 60.675 55.000 0.00 0.00 0.00 3.91
899 1195 6.647895 CGGACGGTATTTATAGGCTAATTGTT 59.352 38.462 0.00 0.00 0.00 2.83
923 1219 1.218316 GTGGACTGAAGGCCTACCG 59.782 63.158 5.16 0.00 42.76 4.02
925 1221 1.471676 CGATGTGGACTGAAGGCCTAC 60.472 57.143 5.16 0.00 0.00 3.18
933 1229 0.603065 CAGTGACCGATGTGGACTGA 59.397 55.000 0.00 0.00 42.00 3.41
964 1260 2.045045 ATGATGGTGGTGGCGGTG 60.045 61.111 0.00 0.00 0.00 4.94
968 1264 1.406539 GTGATTGATGATGGTGGTGGC 59.593 52.381 0.00 0.00 0.00 5.01
986 1282 1.367102 GCCATGGTTGGGTGTTGTG 59.633 57.895 14.67 0.00 43.84 3.33
992 1288 1.303317 GAAGACGCCATGGTTGGGT 60.303 57.895 14.67 6.60 43.84 4.51
993 1289 1.303236 TGAAGACGCCATGGTTGGG 60.303 57.895 14.67 3.17 43.84 4.12
994 1290 0.606401 AGTGAAGACGCCATGGTTGG 60.606 55.000 14.67 5.82 46.66 3.77
995 1291 0.798776 GAGTGAAGACGCCATGGTTG 59.201 55.000 14.67 9.14 0.00 3.77
996 1292 0.687354 AGAGTGAAGACGCCATGGTT 59.313 50.000 14.67 0.00 0.00 3.67
1071 1370 2.143925 GTGTAGGAGCACTTGTTCACC 58.856 52.381 0.00 0.00 36.51 4.02
1147 1446 1.272425 GGGTGGATGGATTGTGGACAA 60.272 52.381 0.00 0.00 40.51 3.18
1161 1460 2.700407 ATTTTGTTCCGGCGGGTGGA 62.700 55.000 27.98 2.78 33.83 4.02
1164 1463 1.074248 AGATTTTGTTCCGGCGGGT 59.926 52.632 27.98 3.41 33.83 5.28
1173 1472 4.347607 CCCAGATCCTTCCAGATTTTGTT 58.652 43.478 0.00 0.00 0.00 2.83
1179 1478 2.049627 GCGCCCAGATCCTTCCAGAT 62.050 60.000 0.00 0.00 0.00 2.90
1359 1658 3.960237 GGCACGTTGAATCCGTCA 58.040 55.556 0.00 0.00 36.17 4.35
1542 1842 1.962306 GTAGTTTGTCGGCCCGCAA 60.962 57.895 0.00 3.24 0.00 4.85
1602 1902 1.174078 TGGTCTTGTCGTCGTAGGCA 61.174 55.000 0.00 0.00 0.00 4.75
1619 1919 3.052082 CGCAGGTGAAGGTGCTGG 61.052 66.667 0.00 0.00 37.55 4.85
1638 1938 3.069872 TCAGTTGGTAGTTTGTTCCGCTA 59.930 43.478 0.00 0.00 0.00 4.26
1639 1939 2.158871 TCAGTTGGTAGTTTGTTCCGCT 60.159 45.455 0.00 0.00 0.00 5.52
1640 1940 2.032290 GTCAGTTGGTAGTTTGTTCCGC 60.032 50.000 0.00 0.00 0.00 5.54
1659 1959 0.389757 GGATCTACGGGCAGAAGGTC 59.610 60.000 0.00 0.00 0.00 3.85
1680 1980 6.877611 GCATATGCATATGGATGATGATGA 57.122 37.500 36.01 3.82 40.31 2.92
1698 2000 7.002879 AGAAATTCAGTTCCTAGCATGCATAT 58.997 34.615 21.98 1.04 0.00 1.78
1699 2001 6.359804 AGAAATTCAGTTCCTAGCATGCATA 58.640 36.000 21.98 8.48 0.00 3.14
1722 2024 7.044641 CGTCAAGTACAGACTTATTCATCGAAG 60.045 40.741 14.15 0.00 44.39 3.79
1725 2028 5.455849 CCGTCAAGTACAGACTTATTCATCG 59.544 44.000 14.15 1.41 44.39 3.84
1735 2038 5.368256 TTCTAGTTCCGTCAAGTACAGAC 57.632 43.478 8.06 8.06 0.00 3.51
1737 2040 7.759465 TCTATTTCTAGTTCCGTCAAGTACAG 58.241 38.462 0.00 0.00 0.00 2.74
1744 2047 5.885230 TCGTTCTATTTCTAGTTCCGTCA 57.115 39.130 0.00 0.00 0.00 4.35
1747 2050 7.751047 TTCATTCGTTCTATTTCTAGTTCCG 57.249 36.000 0.00 0.00 0.00 4.30
1751 2054 9.319143 CCTTCATTCATTCGTTCTATTTCTAGT 57.681 33.333 0.00 0.00 0.00 2.57
1752 2055 9.534565 TCCTTCATTCATTCGTTCTATTTCTAG 57.465 33.333 0.00 0.00 0.00 2.43
1753 2056 9.884636 TTCCTTCATTCATTCGTTCTATTTCTA 57.115 29.630 0.00 0.00 0.00 2.10
1755 2058 9.443283 CATTCCTTCATTCATTCGTTCTATTTC 57.557 33.333 0.00 0.00 0.00 2.17
1756 2059 9.177608 TCATTCCTTCATTCATTCGTTCTATTT 57.822 29.630 0.00 0.00 0.00 1.40
1757 2060 8.737168 TCATTCCTTCATTCATTCGTTCTATT 57.263 30.769 0.00 0.00 0.00 1.73
1759 2062 7.824289 ACTTCATTCCTTCATTCATTCGTTCTA 59.176 33.333 0.00 0.00 0.00 2.10
1764 2071 7.545362 ACTACTTCATTCCTTCATTCATTCG 57.455 36.000 0.00 0.00 0.00 3.34
1776 2083 6.399639 TTGTTTGGGAAACTACTTCATTCC 57.600 37.500 0.00 0.00 41.90 3.01
1807 2114 9.405587 GCTGCAGTTTTGTAAATTACTATTTGA 57.594 29.630 16.64 0.00 35.61 2.69
1808 2115 9.190858 TGCTGCAGTTTTGTAAATTACTATTTG 57.809 29.630 16.64 0.00 35.61 2.32
1811 2118 9.927668 ATTTGCTGCAGTTTTGTAAATTACTAT 57.072 25.926 16.64 0.00 0.00 2.12
1812 2119 9.757227 AATTTGCTGCAGTTTTGTAAATTACTA 57.243 25.926 16.64 0.00 0.00 1.82
1813 2120 8.661352 AATTTGCTGCAGTTTTGTAAATTACT 57.339 26.923 16.64 0.00 0.00 2.24
1814 2121 9.368921 GAAATTTGCTGCAGTTTTGTAAATTAC 57.631 29.630 16.64 0.00 0.00 1.89
1820 2127 5.275067 AGGAAATTTGCTGCAGTTTTGTA 57.725 34.783 16.64 0.00 0.00 2.41
1822 2129 5.754890 AGTTAGGAAATTTGCTGCAGTTTTG 59.245 36.000 21.18 0.00 0.00 2.44
1841 2148 8.015087 TCGCACATGTTCAATTTAAGAAGTTAG 58.985 33.333 0.00 0.00 0.00 2.34
1842 2149 7.866729 TCGCACATGTTCAATTTAAGAAGTTA 58.133 30.769 0.00 0.00 0.00 2.24
1843 2150 6.734137 TCGCACATGTTCAATTTAAGAAGTT 58.266 32.000 0.00 0.00 0.00 2.66
1844 2151 6.312399 TCGCACATGTTCAATTTAAGAAGT 57.688 33.333 0.00 0.00 0.00 3.01
1845 2152 7.164826 GCTATCGCACATGTTCAATTTAAGAAG 59.835 37.037 0.00 0.00 35.78 2.85
1846 2153 6.966632 GCTATCGCACATGTTCAATTTAAGAA 59.033 34.615 0.00 0.00 35.78 2.52
1847 2154 6.093357 TGCTATCGCACATGTTCAATTTAAGA 59.907 34.615 0.00 0.00 42.25 2.10
1848 2155 6.257423 TGCTATCGCACATGTTCAATTTAAG 58.743 36.000 0.00 0.00 42.25 1.85
1849 2156 6.188400 TGCTATCGCACATGTTCAATTTAA 57.812 33.333 0.00 0.00 42.25 1.52
1850 2157 5.809719 TGCTATCGCACATGTTCAATTTA 57.190 34.783 0.00 0.00 42.25 1.40
1851 2158 4.700268 TGCTATCGCACATGTTCAATTT 57.300 36.364 0.00 0.00 42.25 1.82
1863 2170 2.747446 GGGAAAGAAAGTTGCTATCGCA 59.253 45.455 0.00 0.00 46.24 5.10
1864 2171 2.097629 GGGGAAAGAAAGTTGCTATCGC 59.902 50.000 0.00 0.00 0.00 4.58
1865 2172 2.351726 CGGGGAAAGAAAGTTGCTATCG 59.648 50.000 0.00 0.00 0.00 2.92
1866 2173 3.606687 TCGGGGAAAGAAAGTTGCTATC 58.393 45.455 0.00 0.00 0.00 2.08
1867 2174 3.713826 TCGGGGAAAGAAAGTTGCTAT 57.286 42.857 0.00 0.00 0.00 2.97
1868 2175 3.343617 CATCGGGGAAAGAAAGTTGCTA 58.656 45.455 0.00 0.00 0.00 3.49
1869 2176 2.162681 CATCGGGGAAAGAAAGTTGCT 58.837 47.619 0.00 0.00 0.00 3.91
1870 2177 1.202348 CCATCGGGGAAAGAAAGTTGC 59.798 52.381 0.00 0.00 40.01 4.17
1871 2178 2.790433 TCCATCGGGGAAAGAAAGTTG 58.210 47.619 0.00 0.00 44.80 3.16
1882 2189 3.071023 AGTGTTATGTGTATCCATCGGGG 59.929 47.826 0.00 0.00 38.37 5.73
1883 2190 4.336889 AGTGTTATGTGTATCCATCGGG 57.663 45.455 0.00 0.00 0.00 5.14
1884 2191 6.327279 TCTAGTGTTATGTGTATCCATCGG 57.673 41.667 0.00 0.00 0.00 4.18
1885 2192 7.649057 TCTTCTAGTGTTATGTGTATCCATCG 58.351 38.462 0.00 0.00 0.00 3.84
1886 2193 9.250624 GTTCTTCTAGTGTTATGTGTATCCATC 57.749 37.037 0.00 0.00 0.00 3.51
1887 2194 7.921214 CGTTCTTCTAGTGTTATGTGTATCCAT 59.079 37.037 0.00 0.00 0.00 3.41
1888 2195 7.255569 CGTTCTTCTAGTGTTATGTGTATCCA 58.744 38.462 0.00 0.00 0.00 3.41
1889 2196 6.198591 GCGTTCTTCTAGTGTTATGTGTATCC 59.801 42.308 0.00 0.00 0.00 2.59
1890 2197 6.973474 AGCGTTCTTCTAGTGTTATGTGTATC 59.027 38.462 0.00 0.00 0.00 2.24
1891 2198 6.864342 AGCGTTCTTCTAGTGTTATGTGTAT 58.136 36.000 0.00 0.00 0.00 2.29
1892 2199 6.263516 AGCGTTCTTCTAGTGTTATGTGTA 57.736 37.500 0.00 0.00 0.00 2.90
1893 2200 5.135508 AGCGTTCTTCTAGTGTTATGTGT 57.864 39.130 0.00 0.00 0.00 3.72
1894 2201 4.263209 CGAGCGTTCTTCTAGTGTTATGTG 59.737 45.833 0.00 0.00 0.00 3.21
1895 2202 4.082895 ACGAGCGTTCTTCTAGTGTTATGT 60.083 41.667 0.00 0.00 0.00 2.29
1896 2203 4.263209 CACGAGCGTTCTTCTAGTGTTATG 59.737 45.833 0.00 0.00 34.09 1.90
1897 2204 4.413087 CACGAGCGTTCTTCTAGTGTTAT 58.587 43.478 0.00 0.00 34.09 1.89
1898 2205 3.818387 CACGAGCGTTCTTCTAGTGTTA 58.182 45.455 0.00 0.00 34.09 2.41
1899 2206 2.662700 CACGAGCGTTCTTCTAGTGTT 58.337 47.619 0.00 0.00 34.09 3.32
1900 2207 1.666311 GCACGAGCGTTCTTCTAGTGT 60.666 52.381 0.00 0.00 38.74 3.55
1901 2208 0.985549 GCACGAGCGTTCTTCTAGTG 59.014 55.000 0.00 0.00 39.26 2.74
1902 2209 3.403276 GCACGAGCGTTCTTCTAGT 57.597 52.632 0.00 0.00 0.00 2.57
1913 2220 6.590357 ACATAATTGATATTAACGCACGAGC 58.410 36.000 0.00 0.00 30.38 5.03
1971 2278 2.793278 AAAAAGGTCGCCAATGTCAC 57.207 45.000 0.00 0.00 0.00 3.67
1995 2302 5.185454 AGAGTGTGTGTGTGAGAATTTGAA 58.815 37.500 0.00 0.00 0.00 2.69
1999 2306 3.384668 CGAGAGTGTGTGTGTGAGAATT 58.615 45.455 0.00 0.00 0.00 2.17
2021 2328 0.338120 AGAGTGAGGAAGAGGGAGGG 59.662 60.000 0.00 0.00 0.00 4.30
2044 2351 0.996762 GAGAGAGAGGGAGAGGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
2056 2363 1.010793 AGGGGGAGAGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
2057 2364 1.421646 GAGGGGGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
2058 2365 1.010793 AGAGGGGGAGAGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
2059 2366 1.421646 GAGAGGGGGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
2060 2367 1.518367 GAGAGGGGGAGAGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
2061 2368 0.478507 GGAGAGGGGGAGAGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
2062 2369 0.996762 GGGAGAGGGGGAGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
2063 2370 0.998945 AGGGAGAGGGGGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2064 2371 0.996762 GAGGGAGAGGGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
2065 2372 0.998945 AGAGGGAGAGGGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2066 2373 0.996762 GAGAGGGAGAGGGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
2067 2374 0.998945 AGAGAGGGAGAGGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2068 2375 0.996762 GAGAGAGGGAGAGGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
2069 2376 0.998945 AGAGAGAGGGAGAGGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
2070 2377 0.996762 GAGAGAGAGGGAGAGGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
2071 2378 0.998945 AGAGAGAGAGGGAGAGGGGG 60.999 65.000 0.00 0.00 0.00 5.40
2072 2379 0.478507 GAGAGAGAGAGGGAGAGGGG 59.521 65.000 0.00 0.00 0.00 4.79
2073 2380 1.421646 GAGAGAGAGAGAGGGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
2074 2381 2.370189 GAGAGAGAGAGAGAGGGAGAGG 59.630 59.091 0.00 0.00 0.00 3.69
2075 2382 3.312890 AGAGAGAGAGAGAGAGGGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
2076 2383 3.421394 AGAGAGAGAGAGAGAGGGAGA 57.579 52.381 0.00 0.00 0.00 3.71
2077 2384 4.408921 TGTTAGAGAGAGAGAGAGAGGGAG 59.591 50.000 0.00 0.00 0.00 4.30
2078 2385 4.163458 GTGTTAGAGAGAGAGAGAGAGGGA 59.837 50.000 0.00 0.00 0.00 4.20
2079 2386 4.080582 TGTGTTAGAGAGAGAGAGAGAGGG 60.081 50.000 0.00 0.00 0.00 4.30
2080 2387 4.876107 GTGTGTTAGAGAGAGAGAGAGAGG 59.124 50.000 0.00 0.00 0.00 3.69
2081 2388 5.487433 TGTGTGTTAGAGAGAGAGAGAGAG 58.513 45.833 0.00 0.00 0.00 3.20
2082 2389 5.491323 TGTGTGTTAGAGAGAGAGAGAGA 57.509 43.478 0.00 0.00 0.00 3.10
2083 2390 6.016693 TGTTTGTGTGTTAGAGAGAGAGAGAG 60.017 42.308 0.00 0.00 0.00 3.20
2084 2391 5.828328 TGTTTGTGTGTTAGAGAGAGAGAGA 59.172 40.000 0.00 0.00 0.00 3.10
2085 2392 6.078202 TGTTTGTGTGTTAGAGAGAGAGAG 57.922 41.667 0.00 0.00 0.00 3.20
2086 2393 6.656632 ATGTTTGTGTGTTAGAGAGAGAGA 57.343 37.500 0.00 0.00 0.00 3.10
2113 2420 4.202315 TGTGGTCCCGTATCCAATAAGATG 60.202 45.833 0.00 0.00 35.38 2.90
2124 2431 6.949715 TCTTAAAGTTAATGTGGTCCCGTAT 58.050 36.000 0.00 0.00 0.00 3.06
2236 2547 2.544694 GGAGAGTGTGTGTGTGTGAGAG 60.545 54.545 0.00 0.00 0.00 3.20
2237 2548 1.409064 GGAGAGTGTGTGTGTGTGAGA 59.591 52.381 0.00 0.00 0.00 3.27
2238 2549 1.539065 GGGAGAGTGTGTGTGTGTGAG 60.539 57.143 0.00 0.00 0.00 3.51
2239 2550 0.464036 GGGAGAGTGTGTGTGTGTGA 59.536 55.000 0.00 0.00 0.00 3.58
2322 2653 2.701951 GGTCCCGTACCCAATAAGATGA 59.298 50.000 0.00 0.00 43.16 2.92
2431 2762 5.468746 GTGGCTAGCCGATTTACATGAAATA 59.531 40.000 28.28 2.01 37.90 1.40
2520 2851 3.872560 AGAAAACAATCACCGTCGTTC 57.127 42.857 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.