Multiple sequence alignment - TraesCS5B01G015200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G015200 chr5B 100.000 5396 0 0 1 5396 14702827 14708222 0.000000e+00 9965.0
1 TraesCS5B01G015200 chr5B 92.432 1546 80 8 1564 3087 112681076 112679546 0.000000e+00 2172.0
2 TraesCS5B01G015200 chr5B 91.397 1546 99 8 1564 3087 70623946 70622413 0.000000e+00 2087.0
3 TraesCS5B01G015200 chr5B 82.938 1600 221 29 3146 4724 113676932 113675364 0.000000e+00 1395.0
4 TraesCS5B01G015200 chr5B 82.368 1537 225 29 1580 3087 176623235 176624754 0.000000e+00 1295.0
5 TraesCS5B01G015200 chr5B 92.091 569 34 6 2520 3088 158926608 158926051 0.000000e+00 791.0
6 TraesCS5B01G015200 chr5B 83.953 592 93 1 905 1496 113683096 113682507 2.820000e-157 566.0
7 TraesCS5B01G015200 chr5B 85.472 530 70 7 993 1520 515184769 515185293 3.680000e-151 545.0
8 TraesCS5B01G015200 chr5B 80.477 461 72 10 408 862 113683821 113683373 2.410000e-88 337.0
9 TraesCS5B01G015200 chr4D 95.831 1727 60 8 3086 4809 1996520 1998237 0.000000e+00 2780.0
10 TraesCS5B01G015200 chr4D 94.059 707 33 5 157 862 1994942 1995640 0.000000e+00 1064.0
11 TraesCS5B01G015200 chr4D 95.440 614 28 0 905 1518 1995917 1996530 0.000000e+00 979.0
12 TraesCS5B01G015200 chr4D 94.643 168 8 1 1 168 1994636 1994802 5.360000e-65 259.0
13 TraesCS5B01G015200 chr4D 93.182 176 5 3 4989 5158 1998291 1998465 8.970000e-63 252.0
14 TraesCS5B01G015200 chr4D 96.226 53 2 0 4839 4891 1998234 1998286 2.680000e-13 87.9
15 TraesCS5B01G015200 chr6B 96.251 1547 34 3 1564 3088 149107369 149105825 0.000000e+00 2514.0
16 TraesCS5B01G015200 chr7B 95.613 1550 45 6 1564 3092 56091420 56092967 0.000000e+00 2464.0
17 TraesCS5B01G015200 chr7B 89.334 1547 126 11 1564 3087 695347656 695349186 0.000000e+00 1906.0
18 TraesCS5B01G015200 chr7B 92.297 714 49 4 2374 3087 513693999 513693292 0.000000e+00 1009.0
19 TraesCS5B01G015200 chr7B 91.089 101 8 1 4898 4997 129541176 129541076 9.430000e-28 135.0
20 TraesCS5B01G015200 chr2B 91.855 1547 91 10 1564 3087 181332013 181330479 0.000000e+00 2126.0
21 TraesCS5B01G015200 chr2B 95.804 1287 27 3 1823 3087 721911490 721912771 0.000000e+00 2052.0
22 TraesCS5B01G015200 chr2B 90.385 104 10 0 4898 5001 36318446 36318549 2.620000e-28 137.0
23 TraesCS5B01G015200 chr2B 100.000 29 0 0 1518 1546 416510068 416510040 3.000000e-03 54.7
24 TraesCS5B01G015200 chr4A 96.382 1299 26 5 1564 2841 571570789 571569491 0.000000e+00 2119.0
25 TraesCS5B01G015200 chr4B 96.133 1267 27 1 1564 2808 95222333 95221067 0.000000e+00 2049.0
26 TraesCS5B01G015200 chr4B 95.386 1192 55 0 3365 4556 2336123 2334932 0.000000e+00 1897.0
27 TraesCS5B01G015200 chr4B 92.899 859 32 7 4 862 2337779 2336950 0.000000e+00 1221.0
28 TraesCS5B01G015200 chr4B 93.610 626 33 4 4558 5176 2331404 2330779 0.000000e+00 928.0
29 TraesCS5B01G015200 chr4B 91.667 192 12 1 4983 5170 3212605 3212796 4.140000e-66 263.0
30 TraesCS5B01G015200 chr4B 100.000 29 0 0 1518 1546 95223065 95223037 3.000000e-03 54.7
31 TraesCS5B01G015200 chr5D 83.094 1674 231 29 3091 4743 104256376 104254734 0.000000e+00 1476.0
32 TraesCS5B01G015200 chr5D 84.358 537 72 11 990 1520 425839589 425840119 2.880000e-142 516.0
33 TraesCS5B01G015200 chr5D 77.837 749 128 28 128 862 104257980 104257256 3.860000e-116 429.0
34 TraesCS5B01G015200 chr5D 94.595 222 11 1 5175 5396 446254160 446253940 5.180000e-90 342.0
35 TraesCS5B01G015200 chr5D 94.170 223 9 3 5175 5396 111595182 111595401 2.410000e-88 337.0
36 TraesCS5B01G015200 chrUn 82.493 1348 207 18 3091 4424 47547844 47546512 0.000000e+00 1155.0
37 TraesCS5B01G015200 chrUn 83.604 616 101 0 905 1520 47548452 47547837 3.620000e-161 579.0
38 TraesCS5B01G015200 chr3B 81.101 1508 227 29 3092 4547 54795482 54796983 0.000000e+00 1153.0
39 TraesCS5B01G015200 chr3B 83.278 1196 170 16 3366 4537 54786227 54787416 0.000000e+00 1074.0
40 TraesCS5B01G015200 chr3B 81.681 595 100 9 905 1496 54794876 54795464 2.260000e-133 486.0
41 TraesCS5B01G015200 chr3B 92.157 102 7 1 4898 4998 822536280 822536381 5.630000e-30 143.0
42 TraesCS5B01G015200 chr3B 100.000 29 0 0 1518 1546 43828744 43828772 3.000000e-03 54.7
43 TraesCS5B01G015200 chr3A 82.122 1376 203 24 3085 4419 44640677 44642050 0.000000e+00 1138.0
44 TraesCS5B01G015200 chr3A 80.898 1492 231 25 3085 4537 44711007 44712483 0.000000e+00 1127.0
45 TraesCS5B01G015200 chr3A 82.039 618 104 7 905 1520 44640078 44640690 2.230000e-143 520.0
46 TraesCS5B01G015200 chr3A 82.453 587 94 8 905 1489 44710410 44710989 6.240000e-139 505.0
47 TraesCS5B01G015200 chr3A 79.021 715 113 23 167 862 44709437 44710133 6.370000e-124 455.0
48 TraesCS5B01G015200 chr3A 93.392 227 12 2 5170 5396 419304 419527 3.110000e-87 333.0
49 TraesCS5B01G015200 chr1B 91.213 808 71 0 1564 2371 657278547 657277740 0.000000e+00 1099.0
50 TraesCS5B01G015200 chr3D 81.415 1329 196 25 3253 4537 32300939 32302260 0.000000e+00 1038.0
51 TraesCS5B01G015200 chr3D 78.521 703 123 19 179 859 32299196 32299892 2.310000e-118 436.0
52 TraesCS5B01G015200 chr3D 78.483 725 107 34 166 862 32278494 32279197 3.860000e-116 429.0
53 TraesCS5B01G015200 chr3D 94.144 222 11 2 5175 5396 578865054 578864835 2.410000e-88 337.0
54 TraesCS5B01G015200 chr3D 93.694 222 13 1 5175 5396 365506915 365507135 1.120000e-86 331.0
55 TraesCS5B01G015200 chr3D 92.045 88 7 0 3085 3172 32300777 32300864 2.040000e-24 124.0
56 TraesCS5B01G015200 chr5A 84.572 538 72 11 963 1496 540052623 540053153 1.720000e-144 523.0
57 TraesCS5B01G015200 chr5A 91.000 100 9 0 4898 4997 25890692 25890593 9.430000e-28 135.0
58 TraesCS5B01G015200 chr7D 94.170 223 12 1 5174 5396 602796517 602796296 6.690000e-89 339.0
59 TraesCS5B01G015200 chr2D 93.722 223 14 0 5174 5396 588794893 588795115 8.660000e-88 335.0
60 TraesCS5B01G015200 chr6D 93.694 222 12 2 5175 5396 31861030 31860811 1.120000e-86 331.0
61 TraesCS5B01G015200 chr6D 91.176 102 8 1 4894 4995 159983893 159983793 2.620000e-28 137.0
62 TraesCS5B01G015200 chr6D 88.785 107 11 1 4894 5000 808304 808199 4.390000e-26 130.0
63 TraesCS5B01G015200 chr1D 93.722 223 11 2 5175 5396 189395746 189395526 1.120000e-86 331.0
64 TraesCS5B01G015200 chr7A 93.684 95 6 0 4898 4992 494505989 494506083 5.630000e-30 143.0
65 TraesCS5B01G015200 chr2A 92.079 101 8 0 4898 4998 570011666 570011766 5.630000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G015200 chr5B 14702827 14708222 5395 False 9965.000000 9965 100.000000 1 5396 1 chr5B.!!$F1 5395
1 TraesCS5B01G015200 chr5B 112679546 112681076 1530 True 2172.000000 2172 92.432000 1564 3087 1 chr5B.!!$R2 1523
2 TraesCS5B01G015200 chr5B 70622413 70623946 1533 True 2087.000000 2087 91.397000 1564 3087 1 chr5B.!!$R1 1523
3 TraesCS5B01G015200 chr5B 113675364 113676932 1568 True 1395.000000 1395 82.938000 3146 4724 1 chr5B.!!$R3 1578
4 TraesCS5B01G015200 chr5B 176623235 176624754 1519 False 1295.000000 1295 82.368000 1580 3087 1 chr5B.!!$F2 1507
5 TraesCS5B01G015200 chr5B 158926051 158926608 557 True 791.000000 791 92.091000 2520 3088 1 chr5B.!!$R4 568
6 TraesCS5B01G015200 chr5B 515184769 515185293 524 False 545.000000 545 85.472000 993 1520 1 chr5B.!!$F3 527
7 TraesCS5B01G015200 chr5B 113682507 113683821 1314 True 451.500000 566 82.215000 408 1496 2 chr5B.!!$R5 1088
8 TraesCS5B01G015200 chr4D 1994636 1998465 3829 False 903.650000 2780 94.896833 1 5158 6 chr4D.!!$F1 5157
9 TraesCS5B01G015200 chr6B 149105825 149107369 1544 True 2514.000000 2514 96.251000 1564 3088 1 chr6B.!!$R1 1524
10 TraesCS5B01G015200 chr7B 56091420 56092967 1547 False 2464.000000 2464 95.613000 1564 3092 1 chr7B.!!$F1 1528
11 TraesCS5B01G015200 chr7B 695347656 695349186 1530 False 1906.000000 1906 89.334000 1564 3087 1 chr7B.!!$F2 1523
12 TraesCS5B01G015200 chr7B 513693292 513693999 707 True 1009.000000 1009 92.297000 2374 3087 1 chr7B.!!$R2 713
13 TraesCS5B01G015200 chr2B 181330479 181332013 1534 True 2126.000000 2126 91.855000 1564 3087 1 chr2B.!!$R1 1523
14 TraesCS5B01G015200 chr2B 721911490 721912771 1281 False 2052.000000 2052 95.804000 1823 3087 1 chr2B.!!$F2 1264
15 TraesCS5B01G015200 chr4A 571569491 571570789 1298 True 2119.000000 2119 96.382000 1564 2841 1 chr4A.!!$R1 1277
16 TraesCS5B01G015200 chr4B 2330779 2337779 7000 True 1348.666667 1897 93.965000 4 5176 3 chr4B.!!$R1 5172
17 TraesCS5B01G015200 chr4B 95221067 95223065 1998 True 1051.850000 2049 98.066500 1518 2808 2 chr4B.!!$R2 1290
18 TraesCS5B01G015200 chr5D 104254734 104257980 3246 True 952.500000 1476 80.465500 128 4743 2 chr5D.!!$R2 4615
19 TraesCS5B01G015200 chr5D 425839589 425840119 530 False 516.000000 516 84.358000 990 1520 1 chr5D.!!$F2 530
20 TraesCS5B01G015200 chrUn 47546512 47548452 1940 True 867.000000 1155 83.048500 905 4424 2 chrUn.!!$R1 3519
21 TraesCS5B01G015200 chr3B 54786227 54787416 1189 False 1074.000000 1074 83.278000 3366 4537 1 chr3B.!!$F2 1171
22 TraesCS5B01G015200 chr3B 54794876 54796983 2107 False 819.500000 1153 81.391000 905 4547 2 chr3B.!!$F4 3642
23 TraesCS5B01G015200 chr3A 44640078 44642050 1972 False 829.000000 1138 82.080500 905 4419 2 chr3A.!!$F2 3514
24 TraesCS5B01G015200 chr3A 44709437 44712483 3046 False 695.666667 1127 80.790667 167 4537 3 chr3A.!!$F3 4370
25 TraesCS5B01G015200 chr1B 657277740 657278547 807 True 1099.000000 1099 91.213000 1564 2371 1 chr1B.!!$R1 807
26 TraesCS5B01G015200 chr3D 32299196 32302260 3064 False 532.666667 1038 83.993667 179 4537 3 chr3D.!!$F3 4358
27 TraesCS5B01G015200 chr3D 32278494 32279197 703 False 429.000000 429 78.483000 166 862 1 chr3D.!!$F1 696
28 TraesCS5B01G015200 chr5A 540052623 540053153 530 False 523.000000 523 84.572000 963 1496 1 chr5A.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 996 0.254178 CTTCACTCCCCTCCATGGTG 59.746 60.000 12.58 9.53 0.00 4.17 F
1557 1987 0.249398 GACCCTACCACACGCATCTT 59.751 55.000 0.00 0.00 0.00 2.40 F
2296 3412 1.221840 CAGGACCTTATGCGCTGGT 59.778 57.895 9.73 11.78 36.70 4.00 F
3737 4920 1.134580 CCTTGAGATCTGCATCGGTGT 60.135 52.381 0.00 0.00 33.75 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2802 3943 1.211457 GGTGATGAAGGCTGAGATGGT 59.789 52.381 0.0 0.0 0.00 3.55 R
3457 4640 1.065701 CTCGCCGCTGTAGACATTACT 59.934 52.381 0.0 0.0 0.00 2.24 R
4039 5222 0.948141 AAGCTCACTTGCTCGTCTGC 60.948 55.000 0.0 0.0 43.24 4.26 R
5195 9982 0.093026 CGCGAAGACGATTCACCAAC 59.907 55.000 0.0 0.0 42.66 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
293 445 3.833732 TGGTCTCTTAGTCAGACACACT 58.166 45.455 2.66 0.00 41.94 3.55
480 646 6.369615 CCAAATCCCATCAAGAAAATCACAAC 59.630 38.462 0.00 0.00 0.00 3.32
622 802 3.681593 TGCCTTACACTGTTGGTATTCC 58.318 45.455 0.00 0.00 0.00 3.01
626 806 4.695455 CCTTACACTGTTGGTATTCCTGTG 59.305 45.833 0.00 0.00 34.23 3.66
684 864 1.209747 GGCCTCGTCCTCCTAAATTGT 59.790 52.381 0.00 0.00 0.00 2.71
816 996 0.254178 CTTCACTCCCCTCCATGGTG 59.746 60.000 12.58 9.53 0.00 4.17
848 1028 1.532437 TGCACGCATCTTCACTTCAAG 59.468 47.619 0.00 0.00 0.00 3.02
855 1035 4.211164 CGCATCTTCACTTCAAGTTACACA 59.789 41.667 0.00 0.00 0.00 3.72
862 1042 8.154203 TCTTCACTTCAAGTTACACATATTCCA 58.846 33.333 0.00 0.00 0.00 3.53
863 1043 7.667043 TCACTTCAAGTTACACATATTCCAC 57.333 36.000 0.00 0.00 0.00 4.02
864 1044 7.220740 TCACTTCAAGTTACACATATTCCACA 58.779 34.615 0.00 0.00 0.00 4.17
865 1045 7.882791 TCACTTCAAGTTACACATATTCCACAT 59.117 33.333 0.00 0.00 0.00 3.21
866 1046 7.964559 CACTTCAAGTTACACATATTCCACATG 59.035 37.037 0.00 0.00 0.00 3.21
868 1048 5.942826 TCAAGTTACACATATTCCACATGCA 59.057 36.000 0.00 0.00 0.00 3.96
874 1054 4.705991 ACACATATTCCACATGCATCAACA 59.294 37.500 0.00 0.00 0.00 3.33
875 1055 5.361571 ACACATATTCCACATGCATCAACAT 59.638 36.000 0.00 0.00 0.00 2.71
878 1058 4.579454 ATTCCACATGCATCAACATAGC 57.421 40.909 0.00 0.00 0.00 2.97
879 1059 1.941975 TCCACATGCATCAACATAGCG 59.058 47.619 0.00 0.00 0.00 4.26
880 1060 1.672363 CCACATGCATCAACATAGCGT 59.328 47.619 0.00 0.00 0.00 5.07
882 1062 1.672363 ACATGCATCAACATAGCGTGG 59.328 47.619 0.00 0.00 46.63 4.94
883 1063 1.672363 CATGCATCAACATAGCGTGGT 59.328 47.619 0.00 0.00 40.60 4.16
884 1064 1.368641 TGCATCAACATAGCGTGGTC 58.631 50.000 0.00 0.00 0.00 4.02
885 1065 1.066215 TGCATCAACATAGCGTGGTCT 60.066 47.619 0.00 0.00 0.00 3.85
886 1066 1.328680 GCATCAACATAGCGTGGTCTG 59.671 52.381 0.00 0.00 0.00 3.51
887 1067 2.892374 CATCAACATAGCGTGGTCTGA 58.108 47.619 0.00 0.00 0.00 3.27
888 1068 3.461061 CATCAACATAGCGTGGTCTGAT 58.539 45.455 0.00 0.70 0.00 2.90
889 1069 2.892374 TCAACATAGCGTGGTCTGATG 58.108 47.619 0.00 0.00 0.00 3.07
890 1070 2.495669 TCAACATAGCGTGGTCTGATGA 59.504 45.455 0.00 0.00 0.00 2.92
891 1071 3.132824 TCAACATAGCGTGGTCTGATGAT 59.867 43.478 0.00 0.00 0.00 2.45
892 1072 3.827008 ACATAGCGTGGTCTGATGATT 57.173 42.857 0.00 0.00 0.00 2.57
893 1073 3.722147 ACATAGCGTGGTCTGATGATTC 58.278 45.455 0.00 0.00 0.00 2.52
896 1076 0.815615 GCGTGGTCTGATGATTCCCC 60.816 60.000 0.00 0.00 0.00 4.81
897 1077 0.541392 CGTGGTCTGATGATTCCCCA 59.459 55.000 0.00 0.00 0.00 4.96
899 1079 2.579873 GTGGTCTGATGATTCCCCATG 58.420 52.381 0.00 0.00 0.00 3.66
900 1080 2.173356 GTGGTCTGATGATTCCCCATGA 59.827 50.000 0.00 0.00 0.00 3.07
902 1082 4.042062 GTGGTCTGATGATTCCCCATGATA 59.958 45.833 0.00 0.00 0.00 2.15
903 1083 4.853856 TGGTCTGATGATTCCCCATGATAT 59.146 41.667 0.00 0.00 0.00 1.63
914 1328 1.074405 CCCATGATATCCCACACCTGG 59.926 57.143 0.00 0.00 37.29 4.45
926 1340 2.165167 CACACCTGGCATCTTCACAAT 58.835 47.619 0.00 0.00 0.00 2.71
951 1365 5.241506 AGTTGACACAATATTTGTCCACCAG 59.758 40.000 19.55 0.00 43.23 4.00
969 1383 5.380043 CACCAGGATTATGTAGCTCCATTT 58.620 41.667 0.00 0.00 0.00 2.32
1071 1488 2.583143 GGATTTTACCGCTTATGGGCT 58.417 47.619 0.00 0.00 0.00 5.19
1092 1515 5.591877 GGCTGATGATTCCCCATACATATTC 59.408 44.000 0.00 0.00 0.00 1.75
1278 1708 3.360867 TGTTGATGCGGGGTTCATTTAT 58.639 40.909 0.00 0.00 0.00 1.40
1305 1735 5.819901 CCTAAGGTTCCATTTCTGTGAGATC 59.180 44.000 0.00 0.00 0.00 2.75
1492 1922 5.104151 TGGATTGCACTTCACCCTGATATTA 60.104 40.000 0.00 0.00 0.00 0.98
1497 1927 4.941263 GCACTTCACCCTGATATTACAACA 59.059 41.667 0.00 0.00 0.00 3.33
1511 1941 1.604604 ACAACAAAGCCACGCTATGT 58.395 45.000 0.00 0.00 38.25 2.29
1512 1942 1.953686 ACAACAAAGCCACGCTATGTT 59.046 42.857 0.00 0.00 38.25 2.71
1513 1943 2.287547 ACAACAAAGCCACGCTATGTTG 60.288 45.455 13.59 13.59 38.25 3.33
1514 1944 1.890876 ACAAAGCCACGCTATGTTGA 58.109 45.000 4.10 0.00 38.25 3.18
1515 1945 2.436417 ACAAAGCCACGCTATGTTGAT 58.564 42.857 4.10 0.00 38.25 2.57
1516 1946 2.162208 ACAAAGCCACGCTATGTTGATG 59.838 45.455 4.10 0.00 38.25 3.07
1552 1982 2.047560 GGTGACCCTACCACACGC 60.048 66.667 0.00 0.00 40.54 5.34
1553 1983 2.738480 GTGACCCTACCACACGCA 59.262 61.111 0.00 0.00 34.81 5.24
1554 1984 1.295423 GTGACCCTACCACACGCAT 59.705 57.895 0.00 0.00 34.81 4.73
1555 1985 0.739813 GTGACCCTACCACACGCATC 60.740 60.000 0.00 0.00 34.81 3.91
1556 1986 0.902984 TGACCCTACCACACGCATCT 60.903 55.000 0.00 0.00 0.00 2.90
1557 1987 0.249398 GACCCTACCACACGCATCTT 59.751 55.000 0.00 0.00 0.00 2.40
1558 1988 0.249398 ACCCTACCACACGCATCTTC 59.751 55.000 0.00 0.00 0.00 2.87
1561 1991 2.167693 CCCTACCACACGCATCTTCTAA 59.832 50.000 0.00 0.00 0.00 2.10
1562 1992 3.448686 CCTACCACACGCATCTTCTAAG 58.551 50.000 0.00 0.00 0.00 2.18
1645 2761 2.421739 CGGCCCGGACTATCCTTG 59.578 66.667 0.73 0.00 33.30 3.61
2125 3241 2.677848 GCTTCCCCACCCTCTTCC 59.322 66.667 0.00 0.00 0.00 3.46
2296 3412 1.221840 CAGGACCTTATGCGCTGGT 59.778 57.895 9.73 11.78 36.70 4.00
2341 3458 3.745799 TCCACCAAATCGCTTTACTTGA 58.254 40.909 0.00 0.00 0.00 3.02
2594 3735 2.745379 GTGCCACACCAATTTCCCT 58.255 52.632 0.00 0.00 0.00 4.20
3302 4467 5.990996 CCCTTTTCAGCATGTGTGTTATTTT 59.009 36.000 0.00 0.00 37.40 1.82
3457 4640 4.524802 ATCATTGGCAGAGGTGGATTTA 57.475 40.909 0.00 0.00 0.00 1.40
3490 4673 1.594310 GGCGAGATAGATGGAGGGC 59.406 63.158 0.00 0.00 0.00 5.19
3645 4828 9.685276 AGTAATGAGATGATTTTGGTGTATGAA 57.315 29.630 0.00 0.00 0.00 2.57
3653 4836 7.953005 TGATTTTGGTGTATGAATACATGGT 57.047 32.000 6.44 0.00 44.25 3.55
3737 4920 1.134580 CCTTGAGATCTGCATCGGTGT 60.135 52.381 0.00 0.00 33.75 4.16
4006 5189 3.996363 CGGAGTCATGTTGTTTGAGATCA 59.004 43.478 0.00 0.00 0.00 2.92
4296 5521 2.887783 GAGGCCATCGTCTCTTCAGATA 59.112 50.000 5.01 0.00 0.00 1.98
4299 5524 4.346418 AGGCCATCGTCTCTTCAGATAATT 59.654 41.667 5.01 0.00 0.00 1.40
4396 5624 1.162800 GCATCTGGAAGGCCGATGAC 61.163 60.000 18.48 8.36 42.54 3.06
4754 9533 1.750778 CACTGTTTTGGTTCACTGCCT 59.249 47.619 0.00 0.00 0.00 4.75
4756 9535 0.459489 TGTTTTGGTTCACTGCCTGC 59.541 50.000 0.00 0.00 0.00 4.85
4836 9615 4.508662 CAAGAAGACCCAAGGATCTGTAC 58.491 47.826 0.00 0.00 0.00 2.90
4883 9662 3.451402 AGACCCAGGGTGGTTTATTTC 57.549 47.619 19.03 0.00 39.24 2.17
4887 9666 3.658705 ACCCAGGGTGGTTTATTTCTACA 59.341 43.478 11.70 0.00 33.91 2.74
4910 9689 3.889520 AGAATGTTACTCCCTTCGTCC 57.110 47.619 0.00 0.00 0.00 4.79
4915 9694 2.438763 TGTTACTCCCTTCGTCCCAAAA 59.561 45.455 0.00 0.00 0.00 2.44
4919 9698 4.586306 ACTCCCTTCGTCCCAAAATAAT 57.414 40.909 0.00 0.00 0.00 1.28
4929 9708 6.001460 TCGTCCCAAAATAATTGTCTGAACT 58.999 36.000 0.00 0.00 0.00 3.01
4981 9762 8.934023 ACTAAGGTTGAGACATTTATTTTGGA 57.066 30.769 0.00 0.00 31.38 3.53
5000 9781 2.699321 GGAACGGAGGGAGTATTAGCTT 59.301 50.000 0.00 0.00 0.00 3.74
5089 9870 0.521659 GACTACGTGCTCAGCGAGAC 60.522 60.000 0.00 4.66 0.00 3.36
5099 9880 3.262420 GCTCAGCGAGACAAAAATCCTA 58.738 45.455 9.32 0.00 0.00 2.94
5160 9947 6.254157 GCCTGAAATAAACATTGCTATGTGTG 59.746 38.462 14.56 0.00 44.14 3.82
5170 9957 2.794103 TGCTATGTGTGCTCCATGTTT 58.206 42.857 0.00 0.00 0.00 2.83
5172 9959 3.057386 TGCTATGTGTGCTCCATGTTTTG 60.057 43.478 0.00 0.00 0.00 2.44
5176 9963 4.764679 TGTGTGCTCCATGTTTTGTATC 57.235 40.909 0.00 0.00 0.00 2.24
5177 9964 4.397420 TGTGTGCTCCATGTTTTGTATCT 58.603 39.130 0.00 0.00 0.00 1.98
5178 9965 4.455533 TGTGTGCTCCATGTTTTGTATCTC 59.544 41.667 0.00 0.00 0.00 2.75
5179 9966 4.697352 GTGTGCTCCATGTTTTGTATCTCT 59.303 41.667 0.00 0.00 0.00 3.10
5180 9967 5.874810 GTGTGCTCCATGTTTTGTATCTCTA 59.125 40.000 0.00 0.00 0.00 2.43
5181 9968 5.874810 TGTGCTCCATGTTTTGTATCTCTAC 59.125 40.000 0.00 0.00 0.00 2.59
5182 9969 6.109359 GTGCTCCATGTTTTGTATCTCTACT 58.891 40.000 0.00 0.00 0.00 2.57
5183 9970 6.256757 GTGCTCCATGTTTTGTATCTCTACTC 59.743 42.308 0.00 0.00 0.00 2.59
5184 9971 5.755861 GCTCCATGTTTTGTATCTCTACTCC 59.244 44.000 0.00 0.00 0.00 3.85
5185 9972 6.407525 GCTCCATGTTTTGTATCTCTACTCCT 60.408 42.308 0.00 0.00 0.00 3.69
5186 9973 7.201920 GCTCCATGTTTTGTATCTCTACTCCTA 60.202 40.741 0.00 0.00 0.00 2.94
5187 9974 8.603898 TCCATGTTTTGTATCTCTACTCCTAA 57.396 34.615 0.00 0.00 0.00 2.69
5188 9975 9.213777 TCCATGTTTTGTATCTCTACTCCTAAT 57.786 33.333 0.00 0.00 0.00 1.73
5189 9976 9.265901 CCATGTTTTGTATCTCTACTCCTAATG 57.734 37.037 0.00 0.00 0.00 1.90
5190 9977 9.265901 CATGTTTTGTATCTCTACTCCTAATGG 57.734 37.037 0.00 0.00 0.00 3.16
5191 9978 8.603898 TGTTTTGTATCTCTACTCCTAATGGA 57.396 34.615 0.00 0.00 40.69 3.41
5192 9979 8.475639 TGTTTTGTATCTCTACTCCTAATGGAC 58.524 37.037 0.00 0.00 37.46 4.02
5193 9980 8.475639 GTTTTGTATCTCTACTCCTAATGGACA 58.524 37.037 0.00 0.00 37.46 4.02
5194 9981 8.603898 TTTGTATCTCTACTCCTAATGGACAA 57.396 34.615 0.00 0.00 37.46 3.18
5195 9982 7.825331 TGTATCTCTACTCCTAATGGACAAG 57.175 40.000 0.00 0.00 37.46 3.16
5196 9983 7.355101 TGTATCTCTACTCCTAATGGACAAGT 58.645 38.462 0.00 0.00 37.46 3.16
5197 9984 7.839705 TGTATCTCTACTCCTAATGGACAAGTT 59.160 37.037 0.00 0.00 37.46 2.66
5198 9985 6.531503 TCTCTACTCCTAATGGACAAGTTG 57.468 41.667 0.00 0.00 37.46 3.16
5199 9986 5.422331 TCTCTACTCCTAATGGACAAGTTGG 59.578 44.000 7.96 0.00 37.46 3.77
5200 9987 5.091552 TCTACTCCTAATGGACAAGTTGGT 58.908 41.667 7.96 0.00 37.46 3.67
5201 9988 4.021102 ACTCCTAATGGACAAGTTGGTG 57.979 45.455 7.96 0.00 37.46 4.17
5202 9989 3.650942 ACTCCTAATGGACAAGTTGGTGA 59.349 43.478 7.96 0.00 37.46 4.02
5203 9990 4.104102 ACTCCTAATGGACAAGTTGGTGAA 59.896 41.667 7.96 0.00 37.46 3.18
5204 9991 5.222130 ACTCCTAATGGACAAGTTGGTGAAT 60.222 40.000 7.96 0.00 37.46 2.57
5205 9992 5.253330 TCCTAATGGACAAGTTGGTGAATC 58.747 41.667 7.96 0.00 37.46 2.52
5206 9993 4.094887 CCTAATGGACAAGTTGGTGAATCG 59.905 45.833 7.96 0.00 34.57 3.34
5207 9994 2.631160 TGGACAAGTTGGTGAATCGT 57.369 45.000 7.96 0.00 0.00 3.73
5208 9995 2.489971 TGGACAAGTTGGTGAATCGTC 58.510 47.619 7.96 0.00 0.00 4.20
5209 9996 2.104111 TGGACAAGTTGGTGAATCGTCT 59.896 45.455 7.96 0.00 0.00 4.18
5210 9997 3.139077 GGACAAGTTGGTGAATCGTCTT 58.861 45.455 7.96 0.00 0.00 3.01
5211 9998 3.186613 GGACAAGTTGGTGAATCGTCTTC 59.813 47.826 7.96 0.00 0.00 2.87
5212 9999 2.800544 ACAAGTTGGTGAATCGTCTTCG 59.199 45.455 7.96 0.00 38.55 3.79
5213 10000 1.429463 AGTTGGTGAATCGTCTTCGC 58.571 50.000 5.76 5.76 36.96 4.70
5214 10001 0.093026 GTTGGTGAATCGTCTTCGCG 59.907 55.000 0.00 0.00 36.96 5.87
5215 10002 1.011968 TTGGTGAATCGTCTTCGCGG 61.012 55.000 6.13 0.00 36.96 6.46
5216 10003 1.445582 GGTGAATCGTCTTCGCGGT 60.446 57.895 6.13 0.00 36.96 5.68
5217 10004 1.012486 GGTGAATCGTCTTCGCGGTT 61.012 55.000 6.13 0.00 37.96 4.44
5218 10005 0.788391 GTGAATCGTCTTCGCGGTTT 59.212 50.000 6.13 0.00 35.12 3.27
5219 10006 1.987770 GTGAATCGTCTTCGCGGTTTA 59.012 47.619 6.13 0.00 35.12 2.01
5220 10007 2.601763 GTGAATCGTCTTCGCGGTTTAT 59.398 45.455 6.13 0.00 35.12 1.40
5221 10008 3.061697 GTGAATCGTCTTCGCGGTTTATT 59.938 43.478 6.13 0.00 35.12 1.40
5222 10009 3.680937 TGAATCGTCTTCGCGGTTTATTT 59.319 39.130 6.13 0.00 35.12 1.40
5223 10010 4.152759 TGAATCGTCTTCGCGGTTTATTTT 59.847 37.500 6.13 0.00 35.12 1.82
5224 10011 3.710437 TCGTCTTCGCGGTTTATTTTC 57.290 42.857 6.13 0.00 36.96 2.29
5225 10012 3.058450 TCGTCTTCGCGGTTTATTTTCA 58.942 40.909 6.13 0.00 36.96 2.69
5226 10013 3.120923 TCGTCTTCGCGGTTTATTTTCAC 60.121 43.478 6.13 0.00 36.96 3.18
5227 10014 3.120786 CGTCTTCGCGGTTTATTTTCACT 60.121 43.478 6.13 0.00 0.00 3.41
5228 10015 4.148891 GTCTTCGCGGTTTATTTTCACTG 58.851 43.478 6.13 0.00 0.00 3.66
5229 10016 3.187637 TCTTCGCGGTTTATTTTCACTGG 59.812 43.478 6.13 0.00 0.00 4.00
5230 10017 1.807742 TCGCGGTTTATTTTCACTGGG 59.192 47.619 6.13 0.00 34.34 4.45
5231 10018 1.538075 CGCGGTTTATTTTCACTGGGT 59.462 47.619 0.00 0.00 0.00 4.51
5232 10019 2.030628 CGCGGTTTATTTTCACTGGGTT 60.031 45.455 0.00 0.00 0.00 4.11
5233 10020 3.551250 CGCGGTTTATTTTCACTGGGTTT 60.551 43.478 0.00 0.00 0.00 3.27
5234 10021 4.373527 GCGGTTTATTTTCACTGGGTTTT 58.626 39.130 0.00 0.00 0.00 2.43
5235 10022 4.812091 GCGGTTTATTTTCACTGGGTTTTT 59.188 37.500 0.00 0.00 0.00 1.94
5252 10039 2.833631 TTTTTCGTCTCTCCTCCCAC 57.166 50.000 0.00 0.00 0.00 4.61
5253 10040 0.974383 TTTTCGTCTCTCCTCCCACC 59.026 55.000 0.00 0.00 0.00 4.61
5254 10041 0.178944 TTTCGTCTCTCCTCCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
5255 10042 0.898789 TTCGTCTCTCCTCCCACCAC 60.899 60.000 0.00 0.00 0.00 4.16
5256 10043 2.352032 CGTCTCTCCTCCCACCACC 61.352 68.421 0.00 0.00 0.00 4.61
5257 10044 1.990614 GTCTCTCCTCCCACCACCC 60.991 68.421 0.00 0.00 0.00 4.61
5258 10045 2.689034 CTCTCCTCCCACCACCCC 60.689 72.222 0.00 0.00 0.00 4.95
5259 10046 4.348495 TCTCCTCCCACCACCCCC 62.348 72.222 0.00 0.00 0.00 5.40
5260 10047 4.354943 CTCCTCCCACCACCCCCT 62.355 72.222 0.00 0.00 0.00 4.79
5261 10048 4.675303 TCCTCCCACCACCCCCTG 62.675 72.222 0.00 0.00 0.00 4.45
5264 10051 3.943137 CTCCCACCACCCCCTGCTA 62.943 68.421 0.00 0.00 0.00 3.49
5265 10052 3.728373 CCCACCACCCCCTGCTAC 61.728 72.222 0.00 0.00 0.00 3.58
5266 10053 3.728373 CCACCACCCCCTGCTACC 61.728 72.222 0.00 0.00 0.00 3.18
5267 10054 3.728373 CACCACCCCCTGCTACCC 61.728 72.222 0.00 0.00 0.00 3.69
5268 10055 3.954981 ACCACCCCCTGCTACCCT 61.955 66.667 0.00 0.00 0.00 4.34
5269 10056 3.411517 CCACCCCCTGCTACCCTG 61.412 72.222 0.00 0.00 0.00 4.45
5270 10057 3.411517 CACCCCCTGCTACCCTGG 61.412 72.222 0.00 0.00 0.00 4.45
5271 10058 3.954981 ACCCCCTGCTACCCTGGT 61.955 66.667 0.00 0.00 0.00 4.00
5272 10059 3.090532 CCCCCTGCTACCCTGGTC 61.091 72.222 0.00 0.00 0.00 4.02
5273 10060 3.090532 CCCCTGCTACCCTGGTCC 61.091 72.222 0.00 0.00 0.00 4.46
5274 10061 2.285368 CCCTGCTACCCTGGTCCA 60.285 66.667 0.00 0.00 0.00 4.02
5275 10062 2.670148 CCCTGCTACCCTGGTCCAC 61.670 68.421 0.00 0.00 0.00 4.02
5276 10063 2.579201 CTGCTACCCTGGTCCACG 59.421 66.667 0.00 0.00 0.00 4.94
5277 10064 3.000819 TGCTACCCTGGTCCACGG 61.001 66.667 5.41 5.41 0.00 4.94
5278 10065 3.001406 GCTACCCTGGTCCACGGT 61.001 66.667 15.86 15.86 0.00 4.83
5279 10066 2.590114 GCTACCCTGGTCCACGGTT 61.590 63.158 16.66 0.86 0.00 4.44
5280 10067 2.063774 CTACCCTGGTCCACGGTTT 58.936 57.895 16.66 0.00 0.00 3.27
5281 10068 1.269012 CTACCCTGGTCCACGGTTTA 58.731 55.000 16.66 0.79 0.00 2.01
5282 10069 1.835531 CTACCCTGGTCCACGGTTTAT 59.164 52.381 16.66 0.00 0.00 1.40
5283 10070 1.069775 ACCCTGGTCCACGGTTTATT 58.930 50.000 6.72 0.00 0.00 1.40
5284 10071 1.426215 ACCCTGGTCCACGGTTTATTT 59.574 47.619 6.72 0.00 0.00 1.40
5285 10072 2.158430 ACCCTGGTCCACGGTTTATTTT 60.158 45.455 6.72 0.00 0.00 1.82
5286 10073 2.490509 CCCTGGTCCACGGTTTATTTTC 59.509 50.000 0.00 0.00 0.00 2.29
5287 10074 2.160813 CCTGGTCCACGGTTTATTTTCG 59.839 50.000 0.00 0.00 0.00 3.46
5288 10075 1.536331 TGGTCCACGGTTTATTTTCGC 59.464 47.619 0.00 0.00 0.00 4.70
5289 10076 1.464521 GGTCCACGGTTTATTTTCGCG 60.465 52.381 0.00 0.00 0.00 5.87
5290 10077 0.797542 TCCACGGTTTATTTTCGCGG 59.202 50.000 6.13 0.00 0.00 6.46
5291 10078 0.179184 CCACGGTTTATTTTCGCGGG 60.179 55.000 6.13 0.00 0.00 6.13
5292 10079 0.518195 CACGGTTTATTTTCGCGGGT 59.482 50.000 6.13 0.00 0.00 5.28
5293 10080 1.069091 CACGGTTTATTTTCGCGGGTT 60.069 47.619 6.13 0.00 0.00 4.11
5294 10081 1.608109 ACGGTTTATTTTCGCGGGTTT 59.392 42.857 6.13 0.00 0.00 3.27
5295 10082 2.034432 ACGGTTTATTTTCGCGGGTTTT 59.966 40.909 6.13 0.00 0.00 2.43
5296 10083 3.051327 CGGTTTATTTTCGCGGGTTTTT 58.949 40.909 6.13 0.00 0.00 1.94
5313 10100 1.724545 TTTTTCCGTCTCTCCTCCCA 58.275 50.000 0.00 0.00 0.00 4.37
5314 10101 0.974383 TTTTCCGTCTCTCCTCCCAC 59.026 55.000 0.00 0.00 0.00 4.61
5315 10102 0.903454 TTTCCGTCTCTCCTCCCACC 60.903 60.000 0.00 0.00 0.00 4.61
5316 10103 2.037367 CCGTCTCTCCTCCCACCA 59.963 66.667 0.00 0.00 0.00 4.17
5317 10104 2.352032 CCGTCTCTCCTCCCACCAC 61.352 68.421 0.00 0.00 0.00 4.16
5318 10105 2.352032 CGTCTCTCCTCCCACCACC 61.352 68.421 0.00 0.00 0.00 4.61
5319 10106 1.990614 GTCTCTCCTCCCACCACCC 60.991 68.421 0.00 0.00 0.00 4.61
5320 10107 2.689034 CTCTCCTCCCACCACCCC 60.689 72.222 0.00 0.00 0.00 4.95
5321 10108 4.348495 TCTCCTCCCACCACCCCC 62.348 72.222 0.00 0.00 0.00 5.40
5322 10109 4.354943 CTCCTCCCACCACCCCCT 62.355 72.222 0.00 0.00 0.00 4.79
5323 10110 4.348495 TCCTCCCACCACCCCCTC 62.348 72.222 0.00 0.00 0.00 4.30
5328 10115 3.420482 CCACCACCCCCTCCCATC 61.420 72.222 0.00 0.00 0.00 3.51
5329 10116 3.420482 CACCACCCCCTCCCATCC 61.420 72.222 0.00 0.00 0.00 3.51
5330 10117 3.637544 ACCACCCCCTCCCATCCT 61.638 66.667 0.00 0.00 0.00 3.24
5331 10118 3.099170 CCACCCCCTCCCATCCTG 61.099 72.222 0.00 0.00 0.00 3.86
5332 10119 3.099170 CACCCCCTCCCATCCTGG 61.099 72.222 0.00 0.00 37.25 4.45
5333 10120 3.637544 ACCCCCTCCCATCCTGGT 61.638 66.667 0.00 0.00 35.17 4.00
5334 10121 2.774351 CCCCCTCCCATCCTGGTC 60.774 72.222 0.00 0.00 35.17 4.02
5335 10122 2.774351 CCCCTCCCATCCTGGTCC 60.774 72.222 0.00 0.00 35.17 4.46
5336 10123 2.042762 CCCTCCCATCCTGGTCCA 59.957 66.667 0.00 0.00 35.17 4.02
5337 10124 1.386485 CCCTCCCATCCTGGTCCAT 60.386 63.158 0.00 0.00 35.17 3.41
5338 10125 0.995675 CCCTCCCATCCTGGTCCATT 60.996 60.000 0.00 0.00 35.17 3.16
5339 10126 0.184451 CCTCCCATCCTGGTCCATTG 59.816 60.000 0.00 0.00 35.17 2.82
5340 10127 0.184451 CTCCCATCCTGGTCCATTGG 59.816 60.000 0.00 0.00 35.17 3.16
5341 10128 0.552367 TCCCATCCTGGTCCATTGGT 60.552 55.000 1.86 0.00 35.17 3.67
5342 10129 0.336048 CCCATCCTGGTCCATTGGTT 59.664 55.000 1.86 0.00 35.17 3.67
5343 10130 1.273211 CCCATCCTGGTCCATTGGTTT 60.273 52.381 1.86 0.00 35.17 3.27
5344 10131 2.024464 CCCATCCTGGTCCATTGGTTTA 60.024 50.000 1.86 0.00 35.17 2.01
5345 10132 3.374098 CCCATCCTGGTCCATTGGTTTAT 60.374 47.826 1.86 0.00 35.17 1.40
5346 10133 4.289245 CCATCCTGGTCCATTGGTTTATT 58.711 43.478 1.86 0.00 31.35 1.40
5347 10134 4.716287 CCATCCTGGTCCATTGGTTTATTT 59.284 41.667 1.86 0.00 31.35 1.40
5348 10135 5.189539 CCATCCTGGTCCATTGGTTTATTTT 59.810 40.000 1.86 0.00 31.35 1.82
5349 10136 6.296374 CCATCCTGGTCCATTGGTTTATTTTT 60.296 38.462 1.86 0.00 31.35 1.94
5350 10137 6.353404 TCCTGGTCCATTGGTTTATTTTTC 57.647 37.500 1.86 0.00 0.00 2.29
5351 10138 6.081356 TCCTGGTCCATTGGTTTATTTTTCT 58.919 36.000 1.86 0.00 0.00 2.52
5352 10139 6.210584 TCCTGGTCCATTGGTTTATTTTTCTC 59.789 38.462 1.86 0.00 0.00 2.87
5353 10140 6.211384 CCTGGTCCATTGGTTTATTTTTCTCT 59.789 38.462 1.86 0.00 0.00 3.10
5354 10141 7.227049 TGGTCCATTGGTTTATTTTTCTCTC 57.773 36.000 1.86 0.00 0.00 3.20
5355 10142 6.210584 TGGTCCATTGGTTTATTTTTCTCTCC 59.789 38.462 1.86 0.00 0.00 3.71
5356 10143 6.210584 GGTCCATTGGTTTATTTTTCTCTCCA 59.789 38.462 1.86 0.00 0.00 3.86
5357 10144 7.090808 GTCCATTGGTTTATTTTTCTCTCCAC 58.909 38.462 1.86 0.00 0.00 4.02
5358 10145 7.010160 TCCATTGGTTTATTTTTCTCTCCACT 58.990 34.615 1.86 0.00 0.00 4.00
5359 10146 7.176690 TCCATTGGTTTATTTTTCTCTCCACTC 59.823 37.037 1.86 0.00 0.00 3.51
5360 10147 7.177392 CCATTGGTTTATTTTTCTCTCCACTCT 59.823 37.037 0.00 0.00 0.00 3.24
5361 10148 8.579863 CATTGGTTTATTTTTCTCTCCACTCTT 58.420 33.333 0.00 0.00 0.00 2.85
5362 10149 8.533569 TTGGTTTATTTTTCTCTCCACTCTTT 57.466 30.769 0.00 0.00 0.00 2.52
5363 10150 9.635404 TTGGTTTATTTTTCTCTCCACTCTTTA 57.365 29.630 0.00 0.00 0.00 1.85
5364 10151 9.807921 TGGTTTATTTTTCTCTCCACTCTTTAT 57.192 29.630 0.00 0.00 0.00 1.40
5371 10158 7.907214 TTTCTCTCCACTCTTTATTACAAGC 57.093 36.000 0.00 0.00 0.00 4.01
5372 10159 6.605471 TCTCTCCACTCTTTATTACAAGCA 57.395 37.500 0.00 0.00 0.00 3.91
5373 10160 6.634805 TCTCTCCACTCTTTATTACAAGCAG 58.365 40.000 0.00 0.00 0.00 4.24
5374 10161 6.437477 TCTCTCCACTCTTTATTACAAGCAGA 59.563 38.462 0.00 0.00 0.00 4.26
5375 10162 7.004555 TCTCCACTCTTTATTACAAGCAGAA 57.995 36.000 0.00 0.00 0.00 3.02
5376 10163 6.874134 TCTCCACTCTTTATTACAAGCAGAAC 59.126 38.462 0.00 0.00 0.00 3.01
5377 10164 6.769512 TCCACTCTTTATTACAAGCAGAACT 58.230 36.000 0.00 0.00 0.00 3.01
5378 10165 7.224297 TCCACTCTTTATTACAAGCAGAACTT 58.776 34.615 0.00 0.00 40.05 2.66
5379 10166 7.719633 TCCACTCTTTATTACAAGCAGAACTTT 59.280 33.333 0.00 0.00 36.04 2.66
5380 10167 8.017946 CCACTCTTTATTACAAGCAGAACTTTC 58.982 37.037 0.00 0.00 36.04 2.62
5381 10168 8.017946 CACTCTTTATTACAAGCAGAACTTTCC 58.982 37.037 0.00 0.00 36.04 3.13
5382 10169 7.939588 ACTCTTTATTACAAGCAGAACTTTCCT 59.060 33.333 0.00 0.00 36.04 3.36
5383 10170 9.436957 CTCTTTATTACAAGCAGAACTTTCCTA 57.563 33.333 0.00 0.00 36.04 2.94
5384 10171 9.787435 TCTTTATTACAAGCAGAACTTTCCTAA 57.213 29.630 0.00 0.00 36.04 2.69
5385 10172 9.827411 CTTTATTACAAGCAGAACTTTCCTAAC 57.173 33.333 0.00 0.00 36.04 2.34
5386 10173 5.917541 TTACAAGCAGAACTTTCCTAACG 57.082 39.130 0.00 0.00 36.04 3.18
5387 10174 3.805207 ACAAGCAGAACTTTCCTAACGT 58.195 40.909 0.00 0.00 36.04 3.99
5388 10175 4.952460 ACAAGCAGAACTTTCCTAACGTA 58.048 39.130 0.00 0.00 36.04 3.57
5389 10176 5.548406 ACAAGCAGAACTTTCCTAACGTAT 58.452 37.500 0.00 0.00 36.04 3.06
5390 10177 6.694447 ACAAGCAGAACTTTCCTAACGTATA 58.306 36.000 0.00 0.00 36.04 1.47
5391 10178 7.156673 ACAAGCAGAACTTTCCTAACGTATAA 58.843 34.615 0.00 0.00 36.04 0.98
5392 10179 7.117379 ACAAGCAGAACTTTCCTAACGTATAAC 59.883 37.037 0.00 0.00 36.04 1.89
5393 10180 6.694447 AGCAGAACTTTCCTAACGTATAACA 58.306 36.000 0.00 0.00 0.00 2.41
5394 10181 7.156673 AGCAGAACTTTCCTAACGTATAACAA 58.843 34.615 0.00 0.00 0.00 2.83
5395 10182 7.658575 AGCAGAACTTTCCTAACGTATAACAAA 59.341 33.333 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 153 2.815478 CTCATTAACGGAGCTCTGTCC 58.185 52.381 28.02 3.91 33.61 4.02
168 320 5.590259 ACATAAATAGGAAAACGCTGCTCAT 59.410 36.000 0.00 0.00 0.00 2.90
265 417 9.201989 TGTGTCTGACTAAGAGACCAATAATAT 57.798 33.333 9.51 0.00 46.31 1.28
266 418 8.467598 GTGTGTCTGACTAAGAGACCAATAATA 58.532 37.037 9.51 0.00 46.31 0.98
267 419 7.179338 AGTGTGTCTGACTAAGAGACCAATAAT 59.821 37.037 9.51 0.00 46.31 1.28
268 420 6.493802 AGTGTGTCTGACTAAGAGACCAATAA 59.506 38.462 9.51 0.00 46.31 1.40
480 646 2.351726 GCAGTTGCATAGGGTAAGAACG 59.648 50.000 0.00 0.00 41.59 3.95
561 736 3.199727 GGGTTGGGAATGCCATTGTTATT 59.800 43.478 0.00 0.00 35.15 1.40
684 864 5.241506 GTCATTGTCTTGGTTTGATTCTCCA 59.758 40.000 0.00 0.00 0.00 3.86
816 996 1.581934 TGCGTGCAGTCATATAAGGC 58.418 50.000 0.00 0.00 0.00 4.35
848 1028 6.375945 TGATGCATGTGGAATATGTGTAAC 57.624 37.500 2.46 0.00 37.79 2.50
855 1035 5.106436 CGCTATGTTGATGCATGTGGAATAT 60.106 40.000 2.46 0.00 0.00 1.28
862 1042 1.672363 CCACGCTATGTTGATGCATGT 59.328 47.619 2.46 0.00 0.00 3.21
863 1043 1.672363 ACCACGCTATGTTGATGCATG 59.328 47.619 2.46 0.00 0.00 4.06
864 1044 1.942657 GACCACGCTATGTTGATGCAT 59.057 47.619 0.00 0.00 0.00 3.96
865 1045 1.066215 AGACCACGCTATGTTGATGCA 60.066 47.619 0.00 0.00 0.00 3.96
866 1046 1.328680 CAGACCACGCTATGTTGATGC 59.671 52.381 0.00 0.00 0.00 3.91
868 1048 3.132824 TCATCAGACCACGCTATGTTGAT 59.867 43.478 0.00 0.00 0.00 2.57
874 1054 2.037772 GGGAATCATCAGACCACGCTAT 59.962 50.000 0.00 0.00 0.00 2.97
875 1055 1.412710 GGGAATCATCAGACCACGCTA 59.587 52.381 0.00 0.00 0.00 4.26
878 1058 0.541392 TGGGGAATCATCAGACCACG 59.459 55.000 0.00 0.00 0.00 4.94
879 1059 2.173356 TCATGGGGAATCATCAGACCAC 59.827 50.000 0.00 0.00 31.15 4.16
880 1060 2.490961 TCATGGGGAATCATCAGACCA 58.509 47.619 0.00 0.00 32.35 4.02
882 1062 5.435291 GGATATCATGGGGAATCATCAGAC 58.565 45.833 4.83 0.00 0.00 3.51
883 1063 4.476113 GGGATATCATGGGGAATCATCAGA 59.524 45.833 4.83 0.00 0.00 3.27
884 1064 4.228895 TGGGATATCATGGGGAATCATCAG 59.771 45.833 4.83 0.00 0.00 2.90
885 1065 4.018141 GTGGGATATCATGGGGAATCATCA 60.018 45.833 4.83 0.00 0.00 3.07
886 1066 4.018141 TGTGGGATATCATGGGGAATCATC 60.018 45.833 4.83 0.00 0.00 2.92
887 1067 3.924721 TGTGGGATATCATGGGGAATCAT 59.075 43.478 4.83 0.00 0.00 2.45
888 1068 3.074390 GTGTGGGATATCATGGGGAATCA 59.926 47.826 4.83 0.00 0.00 2.57
889 1069 3.562176 GGTGTGGGATATCATGGGGAATC 60.562 52.174 4.83 0.00 0.00 2.52
890 1070 2.379907 GGTGTGGGATATCATGGGGAAT 59.620 50.000 4.83 0.00 0.00 3.01
891 1071 1.780309 GGTGTGGGATATCATGGGGAA 59.220 52.381 4.83 0.00 0.00 3.97
892 1072 1.060640 AGGTGTGGGATATCATGGGGA 60.061 52.381 4.83 0.00 0.00 4.81
893 1073 1.074405 CAGGTGTGGGATATCATGGGG 59.926 57.143 4.83 0.00 0.00 4.96
896 1076 1.143481 TGCCAGGTGTGGGATATCATG 59.857 52.381 4.83 0.00 45.17 3.07
897 1077 1.521764 TGCCAGGTGTGGGATATCAT 58.478 50.000 4.83 0.00 45.17 2.45
914 1328 5.611796 TGTGTCAACTATTGTGAAGATGC 57.388 39.130 0.00 0.00 0.00 3.91
926 1340 6.299922 TGGTGGACAAATATTGTGTCAACTA 58.700 36.000 23.17 19.08 45.55 2.24
951 1365 7.809806 GCAAATGTAAATGGAGCTACATAATCC 59.190 37.037 13.08 1.37 37.69 3.01
957 1371 3.376859 CGGCAAATGTAAATGGAGCTACA 59.623 43.478 0.00 0.00 32.79 2.74
969 1383 2.080693 CCTGTGTTAGCGGCAAATGTA 58.919 47.619 1.45 0.00 0.00 2.29
1071 1488 5.744171 CCGAATATGTATGGGGAATCATCA 58.256 41.667 0.00 0.00 0.00 3.07
1278 1708 4.844085 TCACAGAAATGGAACCTTAGGAGA 59.156 41.667 4.77 0.00 0.00 3.71
1492 1922 1.604604 ACATAGCGTGGCTTTGTTGT 58.395 45.000 7.70 0.18 45.50 3.32
1497 1927 1.133025 GCATCAACATAGCGTGGCTTT 59.867 47.619 0.00 0.00 40.44 3.51
1511 1941 1.377987 GGCGTACCCCTTGCATCAA 60.378 57.895 0.00 0.00 0.00 2.57
1512 1942 2.130821 TTGGCGTACCCCTTGCATCA 62.131 55.000 0.00 0.00 33.59 3.07
1513 1943 0.751643 ATTGGCGTACCCCTTGCATC 60.752 55.000 0.00 0.00 33.59 3.91
1514 1944 0.548989 TATTGGCGTACCCCTTGCAT 59.451 50.000 0.00 0.00 33.59 3.96
1515 1945 0.107410 CTATTGGCGTACCCCTTGCA 60.107 55.000 0.00 0.00 33.59 4.08
1516 1946 0.818040 CCTATTGGCGTACCCCTTGC 60.818 60.000 0.00 0.00 33.59 4.01
1546 1976 0.647410 CGCCTTAGAAGATGCGTGTG 59.353 55.000 5.17 0.00 41.95 3.82
1547 1977 3.050703 CGCCTTAGAAGATGCGTGT 57.949 52.632 5.17 0.00 41.95 4.49
1552 1982 0.250081 GAGGGGCGCCTTAGAAGATG 60.250 60.000 28.56 0.00 0.00 2.90
1553 1983 1.411651 GGAGGGGCGCCTTAGAAGAT 61.412 60.000 28.56 0.00 0.00 2.40
1554 1984 2.064581 GGAGGGGCGCCTTAGAAGA 61.065 63.158 28.56 0.00 0.00 2.87
1555 1985 2.506472 GGAGGGGCGCCTTAGAAG 59.494 66.667 28.56 0.00 0.00 2.85
1556 1986 3.467226 CGGAGGGGCGCCTTAGAA 61.467 66.667 28.56 0.00 0.00 2.10
1557 1987 4.772231 ACGGAGGGGCGCCTTAGA 62.772 66.667 28.56 0.00 0.00 2.10
1558 1988 4.530857 CACGGAGGGGCGCCTTAG 62.531 72.222 28.56 21.54 0.00 2.18
1645 2761 2.224402 GGCTGGATAGGGATGAGTTGAC 60.224 54.545 0.00 0.00 0.00 3.18
1770 2886 3.614092 CCAGCTGACCATGTGATACTTT 58.386 45.455 17.39 0.00 0.00 2.66
2125 3241 4.022413 TCATAGGGTCGACAGAGATAGG 57.978 50.000 18.91 4.22 0.00 2.57
2341 3458 1.528824 CGGATGAGGGAGCAATGGT 59.471 57.895 0.00 0.00 0.00 3.55
2594 3735 3.011566 TGGAGTTCAGCAAAAAGGTCA 57.988 42.857 0.00 0.00 0.00 4.02
2651 3792 2.539081 GGCAAGGACCCCAACCTCT 61.539 63.158 0.00 0.00 36.67 3.69
2691 3832 5.730550 AGAACGTTGGATCACAAGCTTATA 58.269 37.500 5.00 0.00 40.38 0.98
2802 3943 1.211457 GGTGATGAAGGCTGAGATGGT 59.789 52.381 0.00 0.00 0.00 3.55
3088 4235 7.761409 TCAAGACCATTAAGTATTGCATCAAC 58.239 34.615 0.00 0.00 38.53 3.18
3144 4291 2.511218 AGGATTGAGCCCAGCAAGATTA 59.489 45.455 0.00 0.00 0.00 1.75
3457 4640 1.065701 CTCGCCGCTGTAGACATTACT 59.934 52.381 0.00 0.00 0.00 2.24
3645 4828 4.202040 CGCAATGTTCCATGAACCATGTAT 60.202 41.667 0.00 0.00 41.35 2.29
3653 4836 1.199789 GCTCACGCAATGTTCCATGAA 59.800 47.619 0.00 0.00 35.78 2.57
3737 4920 1.681793 GGTAATGCAGTCCTCGAGCTA 59.318 52.381 6.99 0.00 0.00 3.32
4039 5222 0.948141 AAGCTCACTTGCTCGTCTGC 60.948 55.000 0.00 0.00 43.24 4.26
4296 5521 5.221682 TGGTTTGTCTGAATGCATTCCAATT 60.222 36.000 31.35 1.96 35.97 2.32
4299 5524 3.229293 TGGTTTGTCTGAATGCATTCCA 58.771 40.909 31.35 21.19 35.97 3.53
4396 5624 1.311859 TTCTGACCTGCAGTTTGCTG 58.688 50.000 13.81 0.00 45.31 4.41
4754 9533 0.764890 AGCTAAACCTGACCACTGCA 59.235 50.000 0.00 0.00 0.00 4.41
4756 9535 1.714794 CGAGCTAAACCTGACCACTG 58.285 55.000 0.00 0.00 0.00 3.66
4836 9615 4.035558 TGCGCTATCAGCAGGAAATTAAAG 59.964 41.667 9.73 0.00 42.58 1.85
4883 9662 7.490000 ACGAAGGGAGTAACATTCTATTGTAG 58.510 38.462 0.00 0.00 0.00 2.74
4887 9666 5.163332 GGGACGAAGGGAGTAACATTCTATT 60.163 44.000 0.00 0.00 0.00 1.73
4905 9684 6.001460 AGTTCAGACAATTATTTTGGGACGA 58.999 36.000 0.00 0.00 0.00 4.20
4971 9752 4.376225 ACTCCCTCCGTTCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
4980 9761 3.492829 CCAAGCTAATACTCCCTCCGTTC 60.493 52.174 0.00 0.00 0.00 3.95
4981 9762 2.434702 CCAAGCTAATACTCCCTCCGTT 59.565 50.000 0.00 0.00 0.00 4.44
5000 9781 1.689984 TCTGCATTGTTCACAAGCCA 58.310 45.000 0.00 0.00 39.47 4.75
5089 9870 9.612620 GTGTGAACTAACTTCATAGGATTTTTG 57.387 33.333 0.00 0.00 41.10 2.44
5160 9947 5.755861 GGAGTAGAGATACAAAACATGGAGC 59.244 44.000 0.00 0.00 0.00 4.70
5170 9957 7.839705 ACTTGTCCATTAGGAGTAGAGATACAA 59.160 37.037 0.00 0.00 46.92 2.41
5172 9959 7.826918 ACTTGTCCATTAGGAGTAGAGATAC 57.173 40.000 0.00 0.00 46.92 2.24
5176 9963 5.187967 ACCAACTTGTCCATTAGGAGTAGAG 59.812 44.000 0.00 0.00 46.92 2.43
5177 9964 5.046591 CACCAACTTGTCCATTAGGAGTAGA 60.047 44.000 0.00 0.00 46.92 2.59
5178 9965 5.046591 TCACCAACTTGTCCATTAGGAGTAG 60.047 44.000 0.00 0.00 46.92 2.57
5179 9966 4.841813 TCACCAACTTGTCCATTAGGAGTA 59.158 41.667 0.00 0.00 46.92 2.59
5180 9967 3.650942 TCACCAACTTGTCCATTAGGAGT 59.349 43.478 0.00 0.00 46.92 3.85
5181 9968 4.286297 TCACCAACTTGTCCATTAGGAG 57.714 45.455 0.00 0.00 46.92 3.69
5182 9969 4.715534 TTCACCAACTTGTCCATTAGGA 57.284 40.909 0.00 0.00 43.21 2.94
5183 9970 4.094887 CGATTCACCAACTTGTCCATTAGG 59.905 45.833 0.00 0.00 0.00 2.69
5184 9971 4.695455 ACGATTCACCAACTTGTCCATTAG 59.305 41.667 0.00 0.00 0.00 1.73
5185 9972 4.647611 ACGATTCACCAACTTGTCCATTA 58.352 39.130 0.00 0.00 0.00 1.90
5186 9973 3.486383 ACGATTCACCAACTTGTCCATT 58.514 40.909 0.00 0.00 0.00 3.16
5187 9974 3.074412 GACGATTCACCAACTTGTCCAT 58.926 45.455 0.00 0.00 0.00 3.41
5188 9975 2.104111 AGACGATTCACCAACTTGTCCA 59.896 45.455 0.00 0.00 0.00 4.02
5189 9976 2.767505 AGACGATTCACCAACTTGTCC 58.232 47.619 0.00 0.00 0.00 4.02
5190 9977 3.120991 CGAAGACGATTCACCAACTTGTC 60.121 47.826 0.00 0.00 42.66 3.18
5191 9978 2.800544 CGAAGACGATTCACCAACTTGT 59.199 45.455 0.00 0.00 42.66 3.16
5192 9979 2.411547 GCGAAGACGATTCACCAACTTG 60.412 50.000 0.00 0.00 42.66 3.16
5193 9980 1.798813 GCGAAGACGATTCACCAACTT 59.201 47.619 0.00 0.00 42.66 2.66
5194 9981 1.429463 GCGAAGACGATTCACCAACT 58.571 50.000 0.00 0.00 42.66 3.16
5195 9982 0.093026 CGCGAAGACGATTCACCAAC 59.907 55.000 0.00 0.00 42.66 3.77
5196 9983 1.011968 CCGCGAAGACGATTCACCAA 61.012 55.000 8.23 0.00 42.66 3.67
5197 9984 1.445410 CCGCGAAGACGATTCACCA 60.445 57.895 8.23 0.00 42.66 4.17
5198 9985 1.012486 AACCGCGAAGACGATTCACC 61.012 55.000 8.23 0.00 42.66 4.02
5199 9986 0.788391 AAACCGCGAAGACGATTCAC 59.212 50.000 8.23 0.00 42.66 3.18
5200 9987 2.350899 TAAACCGCGAAGACGATTCA 57.649 45.000 8.23 0.00 42.66 2.57
5201 9988 3.920112 AATAAACCGCGAAGACGATTC 57.080 42.857 8.23 0.00 42.66 2.52
5202 9989 4.152759 TGAAAATAAACCGCGAAGACGATT 59.847 37.500 8.23 0.00 42.66 3.34
5203 9990 3.680937 TGAAAATAAACCGCGAAGACGAT 59.319 39.130 8.23 0.00 42.66 3.73
5204 9991 3.058450 TGAAAATAAACCGCGAAGACGA 58.942 40.909 8.23 0.00 42.66 4.20
5205 9992 3.120786 AGTGAAAATAAACCGCGAAGACG 60.121 43.478 8.23 0.00 42.93 4.18
5206 9993 4.148891 CAGTGAAAATAAACCGCGAAGAC 58.851 43.478 8.23 0.00 0.00 3.01
5207 9994 3.187637 CCAGTGAAAATAAACCGCGAAGA 59.812 43.478 8.23 0.00 0.00 2.87
5208 9995 3.488489 CCAGTGAAAATAAACCGCGAAG 58.512 45.455 8.23 0.00 0.00 3.79
5209 9996 2.226912 CCCAGTGAAAATAAACCGCGAA 59.773 45.455 8.23 0.00 0.00 4.70
5210 9997 1.807742 CCCAGTGAAAATAAACCGCGA 59.192 47.619 8.23 0.00 0.00 5.87
5211 9998 1.538075 ACCCAGTGAAAATAAACCGCG 59.462 47.619 0.00 0.00 0.00 6.46
5212 9999 3.653539 AACCCAGTGAAAATAAACCGC 57.346 42.857 0.00 0.00 0.00 5.68
5233 10020 1.346722 GGTGGGAGGAGAGACGAAAAA 59.653 52.381 0.00 0.00 0.00 1.94
5234 10021 0.974383 GGTGGGAGGAGAGACGAAAA 59.026 55.000 0.00 0.00 0.00 2.29
5235 10022 0.178944 TGGTGGGAGGAGAGACGAAA 60.179 55.000 0.00 0.00 0.00 3.46
5236 10023 0.898789 GTGGTGGGAGGAGAGACGAA 60.899 60.000 0.00 0.00 0.00 3.85
5237 10024 1.304217 GTGGTGGGAGGAGAGACGA 60.304 63.158 0.00 0.00 0.00 4.20
5238 10025 2.352032 GGTGGTGGGAGGAGAGACG 61.352 68.421 0.00 0.00 0.00 4.18
5239 10026 1.990614 GGGTGGTGGGAGGAGAGAC 60.991 68.421 0.00 0.00 0.00 3.36
5240 10027 2.450243 GGGTGGTGGGAGGAGAGA 59.550 66.667 0.00 0.00 0.00 3.10
5241 10028 2.689034 GGGGTGGTGGGAGGAGAG 60.689 72.222 0.00 0.00 0.00 3.20
5242 10029 4.348495 GGGGGTGGTGGGAGGAGA 62.348 72.222 0.00 0.00 0.00 3.71
5243 10030 4.354943 AGGGGGTGGTGGGAGGAG 62.355 72.222 0.00 0.00 0.00 3.69
5244 10031 4.675303 CAGGGGGTGGTGGGAGGA 62.675 72.222 0.00 0.00 0.00 3.71
5246 10033 3.943137 TAGCAGGGGGTGGTGGGAG 62.943 68.421 0.00 0.00 37.49 4.30
5247 10034 3.948360 TAGCAGGGGGTGGTGGGA 61.948 66.667 0.00 0.00 37.49 4.37
5248 10035 3.728373 GTAGCAGGGGGTGGTGGG 61.728 72.222 0.00 0.00 37.49 4.61
5249 10036 3.728373 GGTAGCAGGGGGTGGTGG 61.728 72.222 0.00 0.00 37.49 4.61
5250 10037 3.728373 GGGTAGCAGGGGGTGGTG 61.728 72.222 0.00 0.00 37.49 4.17
5251 10038 3.954981 AGGGTAGCAGGGGGTGGT 61.955 66.667 0.00 0.00 40.92 4.16
5252 10039 3.411517 CAGGGTAGCAGGGGGTGG 61.412 72.222 0.00 0.00 0.00 4.61
5253 10040 3.411517 CCAGGGTAGCAGGGGGTG 61.412 72.222 0.00 0.00 0.00 4.61
5254 10041 3.945064 GACCAGGGTAGCAGGGGGT 62.945 68.421 7.45 2.31 0.00 4.95
5255 10042 3.090532 GACCAGGGTAGCAGGGGG 61.091 72.222 7.45 0.00 0.00 5.40
5256 10043 3.090532 GGACCAGGGTAGCAGGGG 61.091 72.222 7.45 1.59 0.00 4.79
5257 10044 2.285368 TGGACCAGGGTAGCAGGG 60.285 66.667 7.45 3.92 0.00 4.45
5258 10045 2.990479 GTGGACCAGGGTAGCAGG 59.010 66.667 0.00 0.00 0.00 4.85
5259 10046 2.579201 CGTGGACCAGGGTAGCAG 59.421 66.667 6.27 0.00 0.00 4.24
5260 10047 3.000819 CCGTGGACCAGGGTAGCA 61.001 66.667 22.84 0.00 35.03 3.49
5265 10052 2.209690 AAATAAACCGTGGACCAGGG 57.790 50.000 28.02 28.02 44.01 4.45
5266 10053 2.160813 CGAAAATAAACCGTGGACCAGG 59.839 50.000 7.23 7.23 0.00 4.45
5267 10054 2.413634 GCGAAAATAAACCGTGGACCAG 60.414 50.000 0.00 0.00 0.00 4.00
5268 10055 1.536331 GCGAAAATAAACCGTGGACCA 59.464 47.619 0.00 0.00 0.00 4.02
5269 10056 1.464521 CGCGAAAATAAACCGTGGACC 60.465 52.381 0.00 0.00 0.00 4.46
5270 10057 1.873295 CGCGAAAATAAACCGTGGAC 58.127 50.000 0.00 0.00 0.00 4.02
5272 10059 3.299738 CCGCGAAAATAAACCGTGG 57.700 52.632 8.23 0.00 45.52 4.94
5273 10060 0.518195 ACCCGCGAAAATAAACCGTG 59.482 50.000 8.23 0.00 0.00 4.94
5274 10061 1.237533 AACCCGCGAAAATAAACCGT 58.762 45.000 8.23 0.00 0.00 4.83
5275 10062 2.334971 AAACCCGCGAAAATAAACCG 57.665 45.000 8.23 0.00 0.00 4.44
5294 10081 1.346722 GTGGGAGGAGAGACGGAAAAA 59.653 52.381 0.00 0.00 0.00 1.94
5295 10082 0.974383 GTGGGAGGAGAGACGGAAAA 59.026 55.000 0.00 0.00 0.00 2.29
5296 10083 0.903454 GGTGGGAGGAGAGACGGAAA 60.903 60.000 0.00 0.00 0.00 3.13
5297 10084 1.305046 GGTGGGAGGAGAGACGGAA 60.305 63.158 0.00 0.00 0.00 4.30
5298 10085 2.359404 GGTGGGAGGAGAGACGGA 59.641 66.667 0.00 0.00 0.00 4.69
5299 10086 2.037367 TGGTGGGAGGAGAGACGG 59.963 66.667 0.00 0.00 0.00 4.79
5300 10087 2.352032 GGTGGTGGGAGGAGAGACG 61.352 68.421 0.00 0.00 0.00 4.18
5301 10088 1.990614 GGGTGGTGGGAGGAGAGAC 60.991 68.421 0.00 0.00 0.00 3.36
5302 10089 2.450243 GGGTGGTGGGAGGAGAGA 59.550 66.667 0.00 0.00 0.00 3.10
5303 10090 2.689034 GGGGTGGTGGGAGGAGAG 60.689 72.222 0.00 0.00 0.00 3.20
5304 10091 4.348495 GGGGGTGGTGGGAGGAGA 62.348 72.222 0.00 0.00 0.00 3.71
5305 10092 4.354943 AGGGGGTGGTGGGAGGAG 62.355 72.222 0.00 0.00 0.00 3.69
5306 10093 4.348495 GAGGGGGTGGTGGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
5311 10098 3.420482 GATGGGAGGGGGTGGTGG 61.420 72.222 0.00 0.00 0.00 4.61
5312 10099 3.420482 GGATGGGAGGGGGTGGTG 61.420 72.222 0.00 0.00 0.00 4.17
5313 10100 3.637544 AGGATGGGAGGGGGTGGT 61.638 66.667 0.00 0.00 0.00 4.16
5314 10101 3.099170 CAGGATGGGAGGGGGTGG 61.099 72.222 0.00 0.00 0.00 4.61
5325 10112 5.937975 AAATAAACCAATGGACCAGGATG 57.062 39.130 6.16 2.63 0.00 3.51
5326 10113 6.730507 AGAAAAATAAACCAATGGACCAGGAT 59.269 34.615 6.16 0.00 0.00 3.24
5327 10114 6.081356 AGAAAAATAAACCAATGGACCAGGA 58.919 36.000 6.16 0.00 0.00 3.86
5328 10115 6.211384 AGAGAAAAATAAACCAATGGACCAGG 59.789 38.462 6.16 0.00 0.00 4.45
5329 10116 7.232118 AGAGAAAAATAAACCAATGGACCAG 57.768 36.000 6.16 0.00 0.00 4.00
5330 10117 6.210584 GGAGAGAAAAATAAACCAATGGACCA 59.789 38.462 6.16 0.00 0.00 4.02
5331 10118 6.210584 TGGAGAGAAAAATAAACCAATGGACC 59.789 38.462 6.16 0.00 0.00 4.46
5332 10119 7.039714 AGTGGAGAGAAAAATAAACCAATGGAC 60.040 37.037 6.16 0.00 0.00 4.02
5333 10120 7.010160 AGTGGAGAGAAAAATAAACCAATGGA 58.990 34.615 6.16 0.00 0.00 3.41
5334 10121 7.177392 AGAGTGGAGAGAAAAATAAACCAATGG 59.823 37.037 0.00 0.00 0.00 3.16
5335 10122 8.115490 AGAGTGGAGAGAAAAATAAACCAATG 57.885 34.615 0.00 0.00 0.00 2.82
5336 10123 8.712228 AAGAGTGGAGAGAAAAATAAACCAAT 57.288 30.769 0.00 0.00 0.00 3.16
5337 10124 8.533569 AAAGAGTGGAGAGAAAAATAAACCAA 57.466 30.769 0.00 0.00 0.00 3.67
5338 10125 9.807921 ATAAAGAGTGGAGAGAAAAATAAACCA 57.192 29.630 0.00 0.00 0.00 3.67
5345 10132 8.784043 GCTTGTAATAAAGAGTGGAGAGAAAAA 58.216 33.333 0.00 0.00 0.00 1.94
5346 10133 7.936847 TGCTTGTAATAAAGAGTGGAGAGAAAA 59.063 33.333 0.00 0.00 0.00 2.29
5347 10134 7.450074 TGCTTGTAATAAAGAGTGGAGAGAAA 58.550 34.615 0.00 0.00 0.00 2.52
5348 10135 7.004555 TGCTTGTAATAAAGAGTGGAGAGAA 57.995 36.000 0.00 0.00 0.00 2.87
5349 10136 6.437477 TCTGCTTGTAATAAAGAGTGGAGAGA 59.563 38.462 0.00 0.00 0.00 3.10
5350 10137 6.634805 TCTGCTTGTAATAAAGAGTGGAGAG 58.365 40.000 0.00 0.00 0.00 3.20
5351 10138 6.605471 TCTGCTTGTAATAAAGAGTGGAGA 57.395 37.500 0.00 0.00 0.00 3.71
5352 10139 6.876257 AGTTCTGCTTGTAATAAAGAGTGGAG 59.124 38.462 0.00 0.00 0.00 3.86
5353 10140 6.769512 AGTTCTGCTTGTAATAAAGAGTGGA 58.230 36.000 0.00 0.00 0.00 4.02
5354 10141 7.440523 AAGTTCTGCTTGTAATAAAGAGTGG 57.559 36.000 0.00 0.00 35.80 4.00
5355 10142 8.017946 GGAAAGTTCTGCTTGTAATAAAGAGTG 58.982 37.037 0.00 0.00 37.52 3.51
5356 10143 7.939588 AGGAAAGTTCTGCTTGTAATAAAGAGT 59.060 33.333 0.00 0.00 37.52 3.24
5357 10144 8.329203 AGGAAAGTTCTGCTTGTAATAAAGAG 57.671 34.615 0.00 0.00 37.52 2.85
5358 10145 9.787435 TTAGGAAAGTTCTGCTTGTAATAAAGA 57.213 29.630 0.00 0.00 37.52 2.52
5359 10146 9.827411 GTTAGGAAAGTTCTGCTTGTAATAAAG 57.173 33.333 0.00 0.00 37.52 1.85
5360 10147 8.500773 CGTTAGGAAAGTTCTGCTTGTAATAAA 58.499 33.333 0.00 0.00 37.52 1.40
5361 10148 7.658575 ACGTTAGGAAAGTTCTGCTTGTAATAA 59.341 33.333 0.00 0.00 37.52 1.40
5362 10149 7.156673 ACGTTAGGAAAGTTCTGCTTGTAATA 58.843 34.615 0.00 0.00 37.52 0.98
5363 10150 5.995897 ACGTTAGGAAAGTTCTGCTTGTAAT 59.004 36.000 0.00 0.00 37.52 1.89
5364 10151 5.362263 ACGTTAGGAAAGTTCTGCTTGTAA 58.638 37.500 0.00 0.00 37.52 2.41
5365 10152 4.952460 ACGTTAGGAAAGTTCTGCTTGTA 58.048 39.130 0.00 0.00 37.52 2.41
5366 10153 3.805207 ACGTTAGGAAAGTTCTGCTTGT 58.195 40.909 0.00 0.00 37.52 3.16
5367 10154 7.117236 TGTTATACGTTAGGAAAGTTCTGCTTG 59.883 37.037 0.00 0.00 37.52 4.01
5368 10155 7.156673 TGTTATACGTTAGGAAAGTTCTGCTT 58.843 34.615 0.00 0.00 39.52 3.91
5369 10156 6.694447 TGTTATACGTTAGGAAAGTTCTGCT 58.306 36.000 0.00 0.00 0.00 4.24
5370 10157 6.956299 TGTTATACGTTAGGAAAGTTCTGC 57.044 37.500 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.