Multiple sequence alignment - TraesCS5B01G014100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G014100 chr5B 100.000 3397 0 0 1 3397 13499292 13495896 0.000000e+00 6274.0
1 TraesCS5B01G014100 chr5D 92.167 1481 60 22 1 1473 14537101 14535669 0.000000e+00 2041.0
2 TraesCS5B01G014100 chr5D 92.912 776 47 2 1570 2337 14535634 14534859 0.000000e+00 1122.0
3 TraesCS5B01G014100 chr5A 92.944 1233 47 15 254 1473 11135807 11134602 0.000000e+00 1759.0
4 TraesCS5B01G014100 chr5A 93.377 770 49 1 1570 2337 11134567 11133798 0.000000e+00 1138.0
5 TraesCS5B01G014100 chr5A 85.389 835 115 7 2521 3353 673678052 673677223 0.000000e+00 859.0
6 TraesCS5B01G014100 chr5A 83.333 834 137 2 2521 3353 475600283 475601115 0.000000e+00 769.0
7 TraesCS5B01G014100 chr5A 92.771 249 13 4 1 248 11149136 11148892 4.170000e-94 355.0
8 TraesCS5B01G014100 chr4A 91.346 832 72 0 2522 3353 739440131 739440962 0.000000e+00 1138.0
9 TraesCS5B01G014100 chr1B 82.309 1334 193 27 1001 2318 21513078 21511772 0.000000e+00 1116.0
10 TraesCS5B01G014100 chr6B 90.636 833 78 0 2521 3353 702198314 702199146 0.000000e+00 1107.0
11 TraesCS5B01G014100 chr6B 82.911 790 129 6 1571 2356 9170155 9170942 0.000000e+00 706.0
12 TraesCS5B01G014100 chr6B 83.932 473 60 13 974 1438 32818878 32819342 4.020000e-119 438.0
13 TraesCS5B01G014100 chr7B 90.276 833 81 0 2521 3353 697864830 697865662 0.000000e+00 1090.0
14 TraesCS5B01G014100 chr2B 88.822 832 86 3 2522 3353 683592563 683593387 0.000000e+00 1014.0
15 TraesCS5B01G014100 chr2B 87.740 832 101 1 2522 3353 683386706 683387536 0.000000e+00 970.0
16 TraesCS5B01G014100 chr2B 87.214 829 105 1 2525 3353 107562844 107563671 0.000000e+00 942.0
17 TraesCS5B01G014100 chr3D 87.861 832 96 1 2522 3353 67073055 67072229 0.000000e+00 972.0
18 TraesCS5B01G014100 chr6A 80.000 1125 173 33 1315 2426 3913268 3914353 0.000000e+00 784.0
19 TraesCS5B01G014100 chr6A 84.989 473 59 9 974 1440 18930882 18931348 1.430000e-128 470.0
20 TraesCS5B01G014100 chr6D 80.095 1055 171 25 1315 2356 4839004 4840032 0.000000e+00 749.0
21 TraesCS5B01G014100 chr6D 79.571 979 152 29 1109 2061 18884242 18885198 0.000000e+00 656.0
22 TraesCS5B01G014100 chr6D 97.500 40 1 0 3358 3397 467203391 467203352 6.080000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G014100 chr5B 13495896 13499292 3396 True 6274.0 6274 100.0000 1 3397 1 chr5B.!!$R1 3396
1 TraesCS5B01G014100 chr5D 14534859 14537101 2242 True 1581.5 2041 92.5395 1 2337 2 chr5D.!!$R1 2336
2 TraesCS5B01G014100 chr5A 11133798 11135807 2009 True 1448.5 1759 93.1605 254 2337 2 chr5A.!!$R3 2083
3 TraesCS5B01G014100 chr5A 673677223 673678052 829 True 859.0 859 85.3890 2521 3353 1 chr5A.!!$R2 832
4 TraesCS5B01G014100 chr5A 475600283 475601115 832 False 769.0 769 83.3330 2521 3353 1 chr5A.!!$F1 832
5 TraesCS5B01G014100 chr4A 739440131 739440962 831 False 1138.0 1138 91.3460 2522 3353 1 chr4A.!!$F1 831
6 TraesCS5B01G014100 chr1B 21511772 21513078 1306 True 1116.0 1116 82.3090 1001 2318 1 chr1B.!!$R1 1317
7 TraesCS5B01G014100 chr6B 702198314 702199146 832 False 1107.0 1107 90.6360 2521 3353 1 chr6B.!!$F3 832
8 TraesCS5B01G014100 chr6B 9170155 9170942 787 False 706.0 706 82.9110 1571 2356 1 chr6B.!!$F1 785
9 TraesCS5B01G014100 chr7B 697864830 697865662 832 False 1090.0 1090 90.2760 2521 3353 1 chr7B.!!$F1 832
10 TraesCS5B01G014100 chr2B 683592563 683593387 824 False 1014.0 1014 88.8220 2522 3353 1 chr2B.!!$F3 831
11 TraesCS5B01G014100 chr2B 683386706 683387536 830 False 970.0 970 87.7400 2522 3353 1 chr2B.!!$F2 831
12 TraesCS5B01G014100 chr2B 107562844 107563671 827 False 942.0 942 87.2140 2525 3353 1 chr2B.!!$F1 828
13 TraesCS5B01G014100 chr3D 67072229 67073055 826 True 972.0 972 87.8610 2522 3353 1 chr3D.!!$R1 831
14 TraesCS5B01G014100 chr6A 3913268 3914353 1085 False 784.0 784 80.0000 1315 2426 1 chr6A.!!$F1 1111
15 TraesCS5B01G014100 chr6D 4839004 4840032 1028 False 749.0 749 80.0950 1315 2356 1 chr6D.!!$F1 1041
16 TraesCS5B01G014100 chr6D 18884242 18885198 956 False 656.0 656 79.5710 1109 2061 1 chr6D.!!$F2 952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
174 175 0.321034 GAAACCGAGGGTGTGGGTAC 60.321 60.000 0.0 0.0 35.9 3.34 F
748 772 2.288666 CAAATGCCACTACGCCACTAT 58.711 47.619 0.0 0.0 0.0 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 1048 0.815213 CCGCCATCATCATCACCGTT 60.815 55.0 0.0 0.0 0.0 4.44 R
2436 2573 0.545646 ATCTCCTTGCCTCCTTGCTC 59.454 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 7.844779 TGGGTCACTACTTAGGAAGAATCTAAT 59.155 37.037 0.00 0.00 0.00 1.73
69 70 9.738832 GTCACTACTTAGGAAGAATCTAATGAC 57.261 37.037 0.00 0.00 31.65 3.06
165 166 3.506067 ACAGCTTATTTTGAAACCGAGGG 59.494 43.478 0.00 0.00 0.00 4.30
166 167 3.506067 CAGCTTATTTTGAAACCGAGGGT 59.494 43.478 0.00 0.00 37.65 4.34
174 175 0.321034 GAAACCGAGGGTGTGGGTAC 60.321 60.000 0.00 0.00 35.90 3.34
285 287 8.599055 TTGACAGATACTCATGATTAAGCATC 57.401 34.615 2.53 0.00 0.00 3.91
286 288 7.960262 TGACAGATACTCATGATTAAGCATCT 58.040 34.615 2.53 0.00 32.34 2.90
287 289 9.082313 TGACAGATACTCATGATTAAGCATCTA 57.918 33.333 2.53 0.00 32.34 1.98
288 290 9.571810 GACAGATACTCATGATTAAGCATCTAG 57.428 37.037 2.53 7.09 32.34 2.43
289 291 8.530311 ACAGATACTCATGATTAAGCATCTAGG 58.470 37.037 2.53 0.00 32.34 3.02
290 292 7.492020 CAGATACTCATGATTAAGCATCTAGGC 59.508 40.741 2.53 0.18 32.34 3.93
302 304 5.523438 AGCATCTAGGCTTAGTGTACTTC 57.477 43.478 2.43 0.00 42.71 3.01
303 305 4.956700 AGCATCTAGGCTTAGTGTACTTCA 59.043 41.667 2.43 0.00 42.71 3.02
407 428 9.007901 ACTTTTGAGAGAAAATATCAAGTGGAG 57.992 33.333 0.00 0.00 40.11 3.86
477 498 8.710749 ATGTTGGTATGGCAATGTTCTATAAT 57.289 30.769 0.00 0.00 0.00 1.28
487 508 9.365906 TGGCAATGTTCTATAATGGATGTAAAT 57.634 29.630 0.00 0.00 0.00 1.40
574 596 9.009327 GTGACAAACATTAAACATCATTATCCG 57.991 33.333 0.00 0.00 0.00 4.18
581 603 4.668576 AAACATCATTATCCGCGCATAG 57.331 40.909 8.75 0.00 0.00 2.23
598 621 4.675114 CGCATAGTTTTTCACCTCACAAAC 59.325 41.667 0.00 0.00 0.00 2.93
605 628 5.568685 TTTTCACCTCACAAACGAATGAA 57.431 34.783 0.00 0.00 0.00 2.57
622 645 8.378172 ACGAATGAACTTGAACTTCAGATTTA 57.622 30.769 0.00 0.00 31.22 1.40
748 772 2.288666 CAAATGCCACTACGCCACTAT 58.711 47.619 0.00 0.00 0.00 2.12
892 925 3.430790 CGATCCACAAGCATTCCTGAGTA 60.431 47.826 0.00 0.00 0.00 2.59
996 1030 3.133691 TGACTGTGTTGATCAAGAGTGC 58.866 45.455 8.80 0.00 0.00 4.40
1014 1048 0.038166 GCAGGATGGACTGGAAACCA 59.962 55.000 0.00 0.00 38.90 3.67
1200 1236 3.859961 CAGCACTAACTGATGTCCTTACG 59.140 47.826 0.00 0.00 40.25 3.18
1230 1269 0.836606 TATCTCGATTGCTTGGGCCA 59.163 50.000 0.00 0.00 37.74 5.36
1231 1270 0.184451 ATCTCGATTGCTTGGGCCAT 59.816 50.000 7.26 0.00 37.74 4.40
1232 1271 0.836606 TCTCGATTGCTTGGGCCATA 59.163 50.000 7.26 0.00 37.74 2.74
1233 1272 1.421268 TCTCGATTGCTTGGGCCATAT 59.579 47.619 7.26 0.00 37.74 1.78
1284 1324 8.083462 TGGGTAACGAAAGATTTTATTTTGACC 58.917 33.333 0.00 0.00 37.60 4.02
1331 1381 7.040686 GGCCACTGATTTCTGTTCTAAAGTTAA 60.041 37.037 0.00 0.00 0.00 2.01
1440 1492 3.380320 GTGCCTTGCTCGGGTAATTAATT 59.620 43.478 5.89 5.89 0.00 1.40
1441 1493 4.577283 GTGCCTTGCTCGGGTAATTAATTA 59.423 41.667 3.71 3.71 0.00 1.40
1442 1494 5.066764 GTGCCTTGCTCGGGTAATTAATTAA 59.933 40.000 9.48 0.00 0.00 1.40
1443 1495 5.830991 TGCCTTGCTCGGGTAATTAATTAAT 59.169 36.000 9.48 4.81 0.00 1.40
1510 1562 8.614469 TTTTAACCCTAATTTCCTTTGCATTG 57.386 30.769 0.00 0.00 0.00 2.82
1511 1563 5.823861 AACCCTAATTTCCTTTGCATTGT 57.176 34.783 0.00 0.00 0.00 2.71
1512 1564 6.926630 AACCCTAATTTCCTTTGCATTGTA 57.073 33.333 0.00 0.00 0.00 2.41
1518 1570 9.520204 CCTAATTTCCTTTGCATTGTAATACTG 57.480 33.333 0.00 0.00 0.00 2.74
1620 1748 0.251341 GCTCTTTTTCCTGGGCCTGA 60.251 55.000 12.58 1.72 0.00 3.86
1664 1792 1.772063 GCGCCTTCAACAACACGACT 61.772 55.000 0.00 0.00 0.00 4.18
2001 2138 1.065564 GGATGTTCCTGCTCAGCTTCT 60.066 52.381 0.00 0.00 32.53 2.85
2047 2184 0.901124 ACCGAGAAGATGAGCTTGCT 59.099 50.000 0.00 0.00 36.83 3.91
2347 2484 1.912043 CAAACTCCCTCCTCCATCACT 59.088 52.381 0.00 0.00 0.00 3.41
2356 2493 1.004745 TCCTCCATCACTTTCCAAGCC 59.995 52.381 0.00 0.00 0.00 4.35
2359 2496 0.322456 CCATCACTTTCCAAGCCCGA 60.322 55.000 0.00 0.00 0.00 5.14
2360 2497 1.683011 CCATCACTTTCCAAGCCCGAT 60.683 52.381 0.00 0.00 0.00 4.18
2362 2499 1.533625 TCACTTTCCAAGCCCGATTG 58.466 50.000 0.00 0.00 0.00 2.67
2385 2522 6.202331 TGGGATATACCAGAAGAAACAGAGA 58.798 40.000 1.12 0.00 41.20 3.10
2388 2525 7.875554 GGGATATACCAGAAGAAACAGAGAATC 59.124 40.741 0.00 0.00 41.20 2.52
2391 2528 5.723672 ACCAGAAGAAACAGAGAATCGTA 57.276 39.130 0.00 0.00 42.67 3.43
2392 2529 5.471257 ACCAGAAGAAACAGAGAATCGTAC 58.529 41.667 0.00 0.00 42.67 3.67
2393 2530 4.559251 CCAGAAGAAACAGAGAATCGTACG 59.441 45.833 9.53 9.53 42.67 3.67
2394 2531 5.154932 CAGAAGAAACAGAGAATCGTACGT 58.845 41.667 16.05 0.00 42.67 3.57
2395 2532 6.312487 CAGAAGAAACAGAGAATCGTACGTA 58.688 40.000 16.05 2.34 42.67 3.57
2396 2533 6.466413 CAGAAGAAACAGAGAATCGTACGTAG 59.534 42.308 16.05 1.48 42.67 3.51
2401 2538 5.618056 ACAGAGAATCGTACGTAGTTCAA 57.382 39.130 16.05 0.00 41.63 2.69
2406 2543 6.095160 AGAGAATCGTACGTAGTTCAAGGATT 59.905 38.462 16.05 3.18 41.63 3.01
2407 2544 6.034591 AGAATCGTACGTAGTTCAAGGATTG 58.965 40.000 16.05 0.00 46.24 2.67
2409 2546 5.125100 TCGTACGTAGTTCAAGGATTGTT 57.875 39.130 16.05 0.00 45.39 2.83
2422 2559 2.027745 AGGATTGTTCAGAGCGTGTGAT 60.028 45.455 0.00 0.00 0.00 3.06
2423 2560 2.349886 GGATTGTTCAGAGCGTGTGATC 59.650 50.000 0.00 0.00 0.00 2.92
2424 2561 1.418373 TTGTTCAGAGCGTGTGATCG 58.582 50.000 0.00 0.00 35.10 3.69
2425 2562 0.596082 TGTTCAGAGCGTGTGATCGA 59.404 50.000 0.00 0.00 35.10 3.59
2426 2563 1.202348 TGTTCAGAGCGTGTGATCGAT 59.798 47.619 0.00 0.00 35.10 3.59
2427 2564 1.585668 GTTCAGAGCGTGTGATCGATG 59.414 52.381 0.54 0.00 35.10 3.84
2428 2565 1.094785 TCAGAGCGTGTGATCGATGA 58.905 50.000 0.54 0.00 35.10 2.92
2429 2566 1.064654 TCAGAGCGTGTGATCGATGAG 59.935 52.381 0.54 0.00 35.10 2.90
2430 2567 0.248825 AGAGCGTGTGATCGATGAGC 60.249 55.000 0.54 0.63 35.10 4.26
2431 2568 0.526310 GAGCGTGTGATCGATGAGCA 60.526 55.000 0.54 0.00 0.00 4.26
2432 2569 0.527169 AGCGTGTGATCGATGAGCAG 60.527 55.000 0.54 0.00 0.00 4.24
2433 2570 1.922903 CGTGTGATCGATGAGCAGC 59.077 57.895 0.54 0.00 0.00 5.25
2434 2571 1.485838 CGTGTGATCGATGAGCAGCC 61.486 60.000 0.54 0.00 0.00 4.85
2435 2572 1.144716 TGTGATCGATGAGCAGCCC 59.855 57.895 0.54 0.00 0.00 5.19
2436 2573 1.953138 GTGATCGATGAGCAGCCCG 60.953 63.158 0.54 0.00 0.00 6.13
2437 2574 2.127232 TGATCGATGAGCAGCCCGA 61.127 57.895 0.54 0.00 35.43 5.14
2438 2575 1.372748 GATCGATGAGCAGCCCGAG 60.373 63.158 0.54 0.00 34.40 4.63
2439 2576 3.512223 ATCGATGAGCAGCCCGAGC 62.512 63.158 0.00 0.00 40.32 5.03
2440 2577 4.519437 CGATGAGCAGCCCGAGCA 62.519 66.667 0.00 0.00 43.56 4.26
2441 2578 2.124983 GATGAGCAGCCCGAGCAA 60.125 61.111 0.00 0.00 43.56 3.91
2442 2579 2.124819 ATGAGCAGCCCGAGCAAG 60.125 61.111 0.00 0.00 43.56 4.01
2443 2580 3.694058 ATGAGCAGCCCGAGCAAGG 62.694 63.158 0.00 0.00 43.56 3.61
2444 2581 4.087892 GAGCAGCCCGAGCAAGGA 62.088 66.667 0.00 0.00 43.56 3.36
2445 2582 4.093291 AGCAGCCCGAGCAAGGAG 62.093 66.667 0.00 0.00 43.56 3.69
2449 2586 4.722700 GCCCGAGCAAGGAGGCAA 62.723 66.667 0.00 0.00 45.07 4.52
2450 2587 2.437359 CCCGAGCAAGGAGGCAAG 60.437 66.667 0.00 0.00 35.83 4.01
2451 2588 2.437359 CCGAGCAAGGAGGCAAGG 60.437 66.667 0.00 0.00 35.83 3.61
2452 2589 2.665000 CGAGCAAGGAGGCAAGGA 59.335 61.111 0.00 0.00 35.83 3.36
2453 2590 1.449246 CGAGCAAGGAGGCAAGGAG 60.449 63.158 0.00 0.00 35.83 3.69
2454 2591 1.892819 CGAGCAAGGAGGCAAGGAGA 61.893 60.000 0.00 0.00 35.83 3.71
2455 2592 0.545646 GAGCAAGGAGGCAAGGAGAT 59.454 55.000 0.00 0.00 35.83 2.75
2456 2593 0.998145 AGCAAGGAGGCAAGGAGATT 59.002 50.000 0.00 0.00 35.83 2.40
2457 2594 2.171448 GAGCAAGGAGGCAAGGAGATTA 59.829 50.000 0.00 0.00 35.83 1.75
2458 2595 2.578021 AGCAAGGAGGCAAGGAGATTAA 59.422 45.455 0.00 0.00 35.83 1.40
2459 2596 3.203934 AGCAAGGAGGCAAGGAGATTAAT 59.796 43.478 0.00 0.00 35.83 1.40
2460 2597 3.956848 GCAAGGAGGCAAGGAGATTAATT 59.043 43.478 0.00 0.00 0.00 1.40
2461 2598 5.103940 AGCAAGGAGGCAAGGAGATTAATTA 60.104 40.000 0.00 0.00 35.83 1.40
2462 2599 5.594317 GCAAGGAGGCAAGGAGATTAATTAA 59.406 40.000 0.00 0.00 0.00 1.40
2463 2600 6.238869 GCAAGGAGGCAAGGAGATTAATTAAG 60.239 42.308 3.94 0.00 0.00 1.85
2464 2601 5.380900 AGGAGGCAAGGAGATTAATTAAGC 58.619 41.667 5.30 5.30 0.00 3.09
2465 2602 5.103940 AGGAGGCAAGGAGATTAATTAAGCA 60.104 40.000 15.37 0.00 0.00 3.91
2466 2603 5.009110 GGAGGCAAGGAGATTAATTAAGCAC 59.991 44.000 15.37 9.06 0.00 4.40
2467 2604 5.509498 AGGCAAGGAGATTAATTAAGCACA 58.491 37.500 15.37 0.00 0.00 4.57
2468 2605 5.358160 AGGCAAGGAGATTAATTAAGCACAC 59.642 40.000 15.37 5.33 0.00 3.82
2469 2606 5.266242 GCAAGGAGATTAATTAAGCACACG 58.734 41.667 15.37 3.41 0.00 4.49
2470 2607 5.730568 GCAAGGAGATTAATTAAGCACACGG 60.731 44.000 15.37 3.74 0.00 4.94
2471 2608 5.099042 AGGAGATTAATTAAGCACACGGT 57.901 39.130 15.37 0.00 0.00 4.83
2472 2609 4.876107 AGGAGATTAATTAAGCACACGGTG 59.124 41.667 15.37 6.58 36.51 4.94
2514 2651 8.843308 TTTACTTTAGTAGGTAGGCTAATGGA 57.157 34.615 0.00 0.00 31.02 3.41
2515 2652 8.843308 TTACTTTAGTAGGTAGGCTAATGGAA 57.157 34.615 0.00 0.00 31.02 3.53
2516 2653 7.744678 ACTTTAGTAGGTAGGCTAATGGAAA 57.255 36.000 0.00 0.00 31.02 3.13
2517 2654 8.333226 ACTTTAGTAGGTAGGCTAATGGAAAT 57.667 34.615 0.00 0.00 31.02 2.17
2518 2655 9.443365 ACTTTAGTAGGTAGGCTAATGGAAATA 57.557 33.333 0.00 0.00 31.02 1.40
2597 2734 3.268334 TCAGCCACCAAATACCCATAAGT 59.732 43.478 0.00 0.00 0.00 2.24
2613 2755 7.293073 ACCCATAAGTAGAATACCGAAGACTA 58.707 38.462 0.00 0.00 44.47 2.59
2648 2790 3.442977 GCCATGAATGCTTCTGAAGAGTT 59.557 43.478 21.06 13.33 0.00 3.01
2649 2791 4.637534 GCCATGAATGCTTCTGAAGAGTTA 59.362 41.667 21.06 4.36 0.00 2.24
2654 2796 7.468141 TGAATGCTTCTGAAGAGTTAGTCTA 57.532 36.000 21.06 2.31 32.65 2.59
2778 2920 2.099062 GCCGCAAAGATGACGCTG 59.901 61.111 0.00 0.00 0.00 5.18
2791 2933 1.227556 ACGCTGCCGTCACTTCTTT 60.228 52.632 0.00 0.00 46.39 2.52
2810 2952 4.415150 CAGCACCATCCCCGCTGT 62.415 66.667 0.00 0.00 46.36 4.40
2860 3002 3.680786 CGACAGACAGGGCGGTCA 61.681 66.667 6.25 0.00 40.29 4.02
2988 3130 5.477291 TGTATACCTTCTGGCTAGCTGTATC 59.523 44.000 15.72 0.00 36.63 2.24
3016 3158 7.824779 AGGACATGTAACTTTGAAGGTAATCTC 59.175 37.037 0.00 0.00 28.33 2.75
3023 3165 1.843368 TGAAGGTAATCTCCCGTCGT 58.157 50.000 0.00 0.00 33.73 4.34
3273 3415 1.203523 CTGGACTCCTTCTCTGAACCG 59.796 57.143 0.00 0.00 0.00 4.44
3353 3495 0.988832 AAAGCCCCGGACATCACTTA 59.011 50.000 0.73 0.00 0.00 2.24
3354 3496 0.541863 AAGCCCCGGACATCACTTAG 59.458 55.000 0.73 0.00 0.00 2.18
3355 3497 1.146263 GCCCCGGACATCACTTAGG 59.854 63.158 0.73 0.00 0.00 2.69
3356 3498 1.335132 GCCCCGGACATCACTTAGGA 61.335 60.000 0.73 0.00 0.00 2.94
3357 3499 0.753262 CCCCGGACATCACTTAGGAG 59.247 60.000 0.73 0.00 0.00 3.69
3358 3500 1.486211 CCCGGACATCACTTAGGAGT 58.514 55.000 0.73 0.00 36.25 3.85
3359 3501 1.409427 CCCGGACATCACTTAGGAGTC 59.591 57.143 0.73 0.00 32.54 3.36
3360 3502 2.379972 CCGGACATCACTTAGGAGTCT 58.620 52.381 0.00 0.00 32.54 3.24
3361 3503 2.099921 CCGGACATCACTTAGGAGTCTG 59.900 54.545 0.00 0.00 32.54 3.51
3362 3504 2.755655 CGGACATCACTTAGGAGTCTGT 59.244 50.000 0.00 0.00 33.64 3.41
3363 3505 3.428180 CGGACATCACTTAGGAGTCTGTG 60.428 52.174 0.00 0.00 32.02 3.66
3364 3506 3.511934 GGACATCACTTAGGAGTCTGTGT 59.488 47.826 0.00 0.00 32.02 3.72
3365 3507 4.489810 GACATCACTTAGGAGTCTGTGTG 58.510 47.826 0.00 0.00 32.02 3.82
3366 3508 3.898123 ACATCACTTAGGAGTCTGTGTGT 59.102 43.478 0.00 0.00 32.54 3.72
3367 3509 4.240888 CATCACTTAGGAGTCTGTGTGTG 58.759 47.826 0.00 0.00 32.54 3.82
3368 3510 3.562182 TCACTTAGGAGTCTGTGTGTGA 58.438 45.455 0.00 0.00 32.54 3.58
3369 3511 4.152647 TCACTTAGGAGTCTGTGTGTGAT 58.847 43.478 0.00 0.00 32.54 3.06
3370 3512 4.021981 TCACTTAGGAGTCTGTGTGTGATG 60.022 45.833 0.00 0.00 32.54 3.07
3371 3513 4.021981 CACTTAGGAGTCTGTGTGTGATGA 60.022 45.833 0.00 0.00 32.54 2.92
3372 3514 4.774726 ACTTAGGAGTCTGTGTGTGATGAT 59.225 41.667 0.00 0.00 0.00 2.45
3373 3515 5.247110 ACTTAGGAGTCTGTGTGTGATGATT 59.753 40.000 0.00 0.00 0.00 2.57
3374 3516 4.630644 AGGAGTCTGTGTGTGATGATTT 57.369 40.909 0.00 0.00 0.00 2.17
3375 3517 5.745312 AGGAGTCTGTGTGTGATGATTTA 57.255 39.130 0.00 0.00 0.00 1.40
3376 3518 6.114187 AGGAGTCTGTGTGTGATGATTTAA 57.886 37.500 0.00 0.00 0.00 1.52
3377 3519 5.934625 AGGAGTCTGTGTGTGATGATTTAAC 59.065 40.000 0.00 0.00 0.00 2.01
3378 3520 5.700832 GGAGTCTGTGTGTGATGATTTAACA 59.299 40.000 0.00 0.00 0.00 2.41
3379 3521 6.204688 GGAGTCTGTGTGTGATGATTTAACAA 59.795 38.462 0.00 0.00 0.00 2.83
3380 3522 7.194607 AGTCTGTGTGTGATGATTTAACAAG 57.805 36.000 0.00 0.00 0.00 3.16
3381 3523 6.205464 AGTCTGTGTGTGATGATTTAACAAGG 59.795 38.462 0.00 0.00 0.00 3.61
3382 3524 6.017109 GTCTGTGTGTGATGATTTAACAAGGT 60.017 38.462 0.00 0.00 0.00 3.50
3383 3525 6.545666 TCTGTGTGTGATGATTTAACAAGGTT 59.454 34.615 0.00 0.00 0.00 3.50
3384 3526 6.502652 TGTGTGTGATGATTTAACAAGGTTG 58.497 36.000 0.00 0.00 0.00 3.77
3385 3527 6.319911 TGTGTGTGATGATTTAACAAGGTTGA 59.680 34.615 0.00 0.00 0.00 3.18
3386 3528 7.014134 TGTGTGTGATGATTTAACAAGGTTGAT 59.986 33.333 0.00 0.00 0.00 2.57
3387 3529 7.326789 GTGTGTGATGATTTAACAAGGTTGATG 59.673 37.037 0.00 0.00 0.00 3.07
3388 3530 7.230309 TGTGTGATGATTTAACAAGGTTGATGA 59.770 33.333 0.00 0.00 0.00 2.92
3389 3531 7.752239 GTGTGATGATTTAACAAGGTTGATGAG 59.248 37.037 0.00 0.00 0.00 2.90
3390 3532 7.665145 TGTGATGATTTAACAAGGTTGATGAGA 59.335 33.333 0.00 0.00 0.00 3.27
3391 3533 8.680903 GTGATGATTTAACAAGGTTGATGAGAT 58.319 33.333 0.00 0.00 0.00 2.75
3392 3534 9.904198 TGATGATTTAACAAGGTTGATGAGATA 57.096 29.630 0.00 0.00 0.00 1.98
3394 3536 9.911788 ATGATTTAACAAGGTTGATGAGATAGT 57.088 29.630 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 9.913310 TCTTACCATGGTATAAAATTGATGTCA 57.087 29.630 25.12 4.33 0.00 3.58
165 166 3.243401 CCAAGCAAAAGAAGTACCCACAC 60.243 47.826 0.00 0.00 0.00 3.82
166 167 2.955660 CCAAGCAAAAGAAGTACCCACA 59.044 45.455 0.00 0.00 0.00 4.17
248 250 9.624373 ATGAGTATCTGTCAAAGCAAATATTCT 57.376 29.630 0.00 0.00 34.92 2.40
295 297 2.224606 AGAACGGACGAGTGAAGTACA 58.775 47.619 0.00 0.00 0.00 2.90
296 298 2.724228 CGAGAACGGACGAGTGAAGTAC 60.724 54.545 0.00 0.00 35.72 2.73
297 299 1.462283 CGAGAACGGACGAGTGAAGTA 59.538 52.381 0.00 0.00 35.72 2.24
298 300 0.237761 CGAGAACGGACGAGTGAAGT 59.762 55.000 0.00 0.00 35.72 3.01
299 301 0.516001 TCGAGAACGGACGAGTGAAG 59.484 55.000 0.00 0.00 40.21 3.02
300 302 0.946528 TTCGAGAACGGACGAGTGAA 59.053 50.000 0.00 0.00 39.59 3.18
301 303 1.162698 ATTCGAGAACGGACGAGTGA 58.837 50.000 0.00 0.00 39.59 3.41
302 304 2.819422 TATTCGAGAACGGACGAGTG 57.181 50.000 0.00 0.00 39.59 3.51
303 305 3.756069 CTTTATTCGAGAACGGACGAGT 58.244 45.455 0.00 0.00 39.59 4.18
461 482 8.759481 TTTACATCCATTATAGAACATTGCCA 57.241 30.769 0.00 0.00 0.00 4.92
572 594 0.802494 AGGTGAAAAACTATGCGCGG 59.198 50.000 8.83 0.00 0.00 6.46
574 596 2.225491 TGTGAGGTGAAAAACTATGCGC 59.775 45.455 0.00 0.00 0.00 6.09
581 603 5.336744 TCATTCGTTTGTGAGGTGAAAAAC 58.663 37.500 0.00 0.00 0.00 2.43
598 621 9.107367 GTTAAATCTGAAGTTCAAGTTCATTCG 57.893 33.333 8.15 0.00 36.98 3.34
605 628 8.956426 TGAACAAGTTAAATCTGAAGTTCAAGT 58.044 29.630 7.06 0.00 40.50 3.16
663 686 7.305763 GCAAACCAAGTTACTGTAAAAATCACG 60.306 37.037 1.10 0.00 0.00 4.35
675 698 2.047002 ACGGTGCAAACCAAGTTACT 57.953 45.000 0.00 0.00 0.00 2.24
774 807 2.868583 CACTGACGGAAGATGCCATTAG 59.131 50.000 0.00 0.00 0.00 1.73
775 808 2.905075 CACTGACGGAAGATGCCATTA 58.095 47.619 0.00 0.00 0.00 1.90
776 809 1.742761 CACTGACGGAAGATGCCATT 58.257 50.000 0.00 0.00 0.00 3.16
777 810 0.745845 GCACTGACGGAAGATGCCAT 60.746 55.000 0.00 0.00 0.00 4.40
868 901 0.620556 AGGAATGCTTGTGGATCGGT 59.379 50.000 0.00 0.00 0.00 4.69
869 902 1.019673 CAGGAATGCTTGTGGATCGG 58.980 55.000 0.00 0.00 0.00 4.18
870 903 1.938577 CTCAGGAATGCTTGTGGATCG 59.061 52.381 0.00 0.00 0.00 3.69
871 904 2.996631 ACTCAGGAATGCTTGTGGATC 58.003 47.619 0.00 0.00 0.00 3.36
872 905 4.574674 TTACTCAGGAATGCTTGTGGAT 57.425 40.909 0.00 0.00 0.00 3.41
873 906 4.365514 TTTACTCAGGAATGCTTGTGGA 57.634 40.909 0.00 0.00 0.00 4.02
996 1030 2.162681 GTTGGTTTCCAGTCCATCCTG 58.837 52.381 0.00 0.00 33.81 3.86
1014 1048 0.815213 CCGCCATCATCATCACCGTT 60.815 55.000 0.00 0.00 0.00 4.44
1200 1236 7.394872 CAAGCAATCGAGATACAACTAAACTC 58.605 38.462 0.00 0.00 0.00 3.01
1230 1269 9.327628 GCTTCTTCATCAGTGATGCATATATAT 57.672 33.333 25.53 0.00 39.63 0.86
1231 1270 8.316214 TGCTTCTTCATCAGTGATGCATATATA 58.684 33.333 25.53 6.31 39.63 0.86
1232 1271 7.166167 TGCTTCTTCATCAGTGATGCATATAT 58.834 34.615 25.53 0.00 39.63 0.86
1233 1272 6.527423 TGCTTCTTCATCAGTGATGCATATA 58.473 36.000 25.53 7.71 39.63 0.86
1284 1324 5.060446 GGCCACGATTTCTCATTTTAAAACG 59.940 40.000 1.97 2.51 37.05 3.60
1483 1535 9.806448 AATGCAAAGGAAATTAGGGTTAAAAAT 57.194 25.926 0.00 0.00 0.00 1.82
1492 1544 9.520204 CAGTATTACAATGCAAAGGAAATTAGG 57.480 33.333 0.00 0.00 0.00 2.69
1510 1562 9.550811 GCCAACAGTTGTTATTTACAGTATTAC 57.449 33.333 12.42 0.00 38.19 1.89
1511 1563 8.732531 GGCCAACAGTTGTTATTTACAGTATTA 58.267 33.333 12.42 0.00 38.19 0.98
1512 1564 7.231722 TGGCCAACAGTTGTTATTTACAGTATT 59.768 33.333 0.61 0.00 38.19 1.89
1565 1679 1.747355 GCTCTGCAATTGCCATGTACT 59.253 47.619 26.94 0.00 41.18 2.73
1566 1680 1.202336 GGCTCTGCAATTGCCATGTAC 60.202 52.381 26.94 11.60 45.46 2.90
1620 1748 4.047059 CGTGGCCGTCGTGTACCT 62.047 66.667 11.23 0.00 0.00 3.08
1664 1792 0.991920 GGAGGAAGGTGAACATGGGA 59.008 55.000 0.00 0.00 0.00 4.37
1890 2027 3.490031 TTGCCGAGAAGCCCAGCAA 62.490 57.895 0.00 0.00 40.89 3.91
2001 2138 4.467084 GACGGCGGCCATCTGGAA 62.467 66.667 20.71 0.00 37.39 3.53
2356 2493 5.483685 TTCTTCTGGTATATCCCAATCGG 57.516 43.478 0.00 0.00 33.07 4.18
2359 2496 7.348274 TCTCTGTTTCTTCTGGTATATCCCAAT 59.652 37.037 0.00 0.00 33.07 3.16
2360 2497 6.672218 TCTCTGTTTCTTCTGGTATATCCCAA 59.328 38.462 0.00 0.00 33.07 4.12
2362 2499 6.732896 TCTCTGTTTCTTCTGGTATATCCC 57.267 41.667 0.00 0.00 34.77 3.85
2367 2504 6.287589 ACGATTCTCTGTTTCTTCTGGTAT 57.712 37.500 0.00 0.00 0.00 2.73
2368 2505 5.723672 ACGATTCTCTGTTTCTTCTGGTA 57.276 39.130 0.00 0.00 0.00 3.25
2369 2506 4.608948 ACGATTCTCTGTTTCTTCTGGT 57.391 40.909 0.00 0.00 0.00 4.00
2370 2507 4.559251 CGTACGATTCTCTGTTTCTTCTGG 59.441 45.833 10.44 0.00 0.00 3.86
2371 2508 5.154932 ACGTACGATTCTCTGTTTCTTCTG 58.845 41.667 24.41 0.00 0.00 3.02
2372 2509 5.373981 ACGTACGATTCTCTGTTTCTTCT 57.626 39.130 24.41 0.00 0.00 2.85
2385 2522 5.717119 ACAATCCTTGAACTACGTACGATT 58.283 37.500 24.41 12.85 0.00 3.34
2388 2525 4.919168 TGAACAATCCTTGAACTACGTACG 59.081 41.667 15.01 15.01 0.00 3.67
2391 2528 5.209818 TCTGAACAATCCTTGAACTACGT 57.790 39.130 0.00 0.00 0.00 3.57
2392 2529 4.092091 GCTCTGAACAATCCTTGAACTACG 59.908 45.833 0.00 0.00 0.00 3.51
2393 2530 4.092091 CGCTCTGAACAATCCTTGAACTAC 59.908 45.833 0.00 0.00 0.00 2.73
2394 2531 4.245660 CGCTCTGAACAATCCTTGAACTA 58.754 43.478 0.00 0.00 0.00 2.24
2395 2532 3.070018 CGCTCTGAACAATCCTTGAACT 58.930 45.455 0.00 0.00 0.00 3.01
2396 2533 2.808543 ACGCTCTGAACAATCCTTGAAC 59.191 45.455 0.00 0.00 0.00 3.18
2401 2538 1.344438 TCACACGCTCTGAACAATCCT 59.656 47.619 0.00 0.00 0.00 3.24
2406 2543 0.596082 TCGATCACACGCTCTGAACA 59.404 50.000 0.00 0.00 0.00 3.18
2407 2544 1.585668 CATCGATCACACGCTCTGAAC 59.414 52.381 0.00 0.00 0.00 3.18
2409 2546 1.064654 CTCATCGATCACACGCTCTGA 59.935 52.381 0.00 0.00 0.00 3.27
2422 2559 4.212913 GCTCGGGCTGCTCATCGA 62.213 66.667 0.00 4.27 35.22 3.59
2423 2560 4.519437 TGCTCGGGCTGCTCATCG 62.519 66.667 9.62 0.00 39.59 3.84
2424 2561 2.124983 TTGCTCGGGCTGCTCATC 60.125 61.111 9.62 0.00 39.59 2.92
2425 2562 2.124819 CTTGCTCGGGCTGCTCAT 60.125 61.111 9.62 0.00 39.59 2.90
2426 2563 4.399395 CCTTGCTCGGGCTGCTCA 62.399 66.667 9.62 0.00 39.59 4.26
2427 2564 4.087892 TCCTTGCTCGGGCTGCTC 62.088 66.667 9.62 0.00 39.59 4.26
2428 2565 4.093291 CTCCTTGCTCGGGCTGCT 62.093 66.667 9.62 0.00 39.59 4.24
2432 2569 4.722700 TTGCCTCCTTGCTCGGGC 62.723 66.667 0.00 0.00 44.31 6.13
2433 2570 2.437359 CTTGCCTCCTTGCTCGGG 60.437 66.667 0.00 0.00 0.00 5.14
2434 2571 2.437359 CCTTGCCTCCTTGCTCGG 60.437 66.667 0.00 0.00 0.00 4.63
2435 2572 1.449246 CTCCTTGCCTCCTTGCTCG 60.449 63.158 0.00 0.00 0.00 5.03
2436 2573 0.545646 ATCTCCTTGCCTCCTTGCTC 59.454 55.000 0.00 0.00 0.00 4.26
2437 2574 0.998145 AATCTCCTTGCCTCCTTGCT 59.002 50.000 0.00 0.00 0.00 3.91
2438 2575 2.717639 TAATCTCCTTGCCTCCTTGC 57.282 50.000 0.00 0.00 0.00 4.01
2439 2576 6.238869 GCTTAATTAATCTCCTTGCCTCCTTG 60.239 42.308 0.00 0.00 0.00 3.61
2440 2577 5.830457 GCTTAATTAATCTCCTTGCCTCCTT 59.170 40.000 0.00 0.00 0.00 3.36
2441 2578 5.103940 TGCTTAATTAATCTCCTTGCCTCCT 60.104 40.000 0.00 0.00 0.00 3.69
2442 2579 5.009110 GTGCTTAATTAATCTCCTTGCCTCC 59.991 44.000 0.00 0.00 0.00 4.30
2443 2580 5.590259 TGTGCTTAATTAATCTCCTTGCCTC 59.410 40.000 0.00 0.00 0.00 4.70
2444 2581 5.358160 GTGTGCTTAATTAATCTCCTTGCCT 59.642 40.000 0.00 0.00 0.00 4.75
2445 2582 5.582550 GTGTGCTTAATTAATCTCCTTGCC 58.417 41.667 0.00 0.00 0.00 4.52
2446 2583 5.266242 CGTGTGCTTAATTAATCTCCTTGC 58.734 41.667 0.00 0.00 0.00 4.01
2447 2584 5.354234 ACCGTGTGCTTAATTAATCTCCTTG 59.646 40.000 0.00 0.00 0.00 3.61
2448 2585 5.354234 CACCGTGTGCTTAATTAATCTCCTT 59.646 40.000 0.00 0.00 0.00 3.36
2449 2586 4.876107 CACCGTGTGCTTAATTAATCTCCT 59.124 41.667 0.00 0.00 0.00 3.69
2450 2587 5.156804 CACCGTGTGCTTAATTAATCTCC 57.843 43.478 0.00 0.00 0.00 3.71
2464 2601 2.892373 ATAAAATCGTGCACCGTGTG 57.108 45.000 12.15 0.00 37.94 3.82
2465 2602 3.907894 AAATAAAATCGTGCACCGTGT 57.092 38.095 12.15 0.00 37.94 4.49
2466 2603 6.862944 AATAAAATAAAATCGTGCACCGTG 57.137 33.333 12.15 0.00 37.94 4.94
2467 2604 7.876896 AAAATAAAATAAAATCGTGCACCGT 57.123 28.000 12.15 0.00 37.94 4.83
2468 2605 9.068008 AGTAAAATAAAATAAAATCGTGCACCG 57.932 29.630 12.15 6.81 38.13 4.94
2488 2625 9.270707 TCCATTAGCCTACCTACTAAAGTAAAA 57.729 33.333 0.00 0.00 32.43 1.52
2489 2626 8.843308 TCCATTAGCCTACCTACTAAAGTAAA 57.157 34.615 0.00 0.00 32.43 2.01
2490 2627 8.843308 TTCCATTAGCCTACCTACTAAAGTAA 57.157 34.615 0.00 0.00 32.43 2.24
2491 2628 8.843308 TTTCCATTAGCCTACCTACTAAAGTA 57.157 34.615 0.00 0.00 32.43 2.24
2492 2629 7.744678 TTTCCATTAGCCTACCTACTAAAGT 57.255 36.000 0.00 0.00 32.43 2.66
2497 2634 8.945193 TGAATTATTTCCATTAGCCTACCTACT 58.055 33.333 0.00 0.00 0.00 2.57
2498 2635 9.000486 GTGAATTATTTCCATTAGCCTACCTAC 58.000 37.037 0.00 0.00 0.00 3.18
2499 2636 7.876068 CGTGAATTATTTCCATTAGCCTACCTA 59.124 37.037 0.00 0.00 0.00 3.08
2500 2637 6.710744 CGTGAATTATTTCCATTAGCCTACCT 59.289 38.462 0.00 0.00 0.00 3.08
2501 2638 6.567891 GCGTGAATTATTTCCATTAGCCTACC 60.568 42.308 0.00 0.00 0.00 3.18
2502 2639 6.204882 AGCGTGAATTATTTCCATTAGCCTAC 59.795 38.462 0.00 0.00 0.00 3.18
2503 2640 6.296026 AGCGTGAATTATTTCCATTAGCCTA 58.704 36.000 0.00 0.00 0.00 3.93
2504 2641 5.133221 AGCGTGAATTATTTCCATTAGCCT 58.867 37.500 0.00 0.00 0.00 4.58
2505 2642 5.438761 AGCGTGAATTATTTCCATTAGCC 57.561 39.130 0.00 0.00 0.00 3.93
2506 2643 9.463443 AATTAAGCGTGAATTATTTCCATTAGC 57.537 29.630 0.00 0.00 0.00 3.09
2510 2647 9.019764 CGAAAATTAAGCGTGAATTATTTCCAT 57.980 29.630 0.00 0.00 0.00 3.41
2511 2648 8.237949 TCGAAAATTAAGCGTGAATTATTTCCA 58.762 29.630 0.00 0.00 0.00 3.53
2512 2649 8.521059 GTCGAAAATTAAGCGTGAATTATTTCC 58.479 33.333 0.00 0.00 0.00 3.13
2513 2650 9.057365 TGTCGAAAATTAAGCGTGAATTATTTC 57.943 29.630 0.00 0.00 0.00 2.17
2514 2651 8.958175 TGTCGAAAATTAAGCGTGAATTATTT 57.042 26.923 0.00 0.00 0.00 1.40
2515 2652 8.447833 TCTGTCGAAAATTAAGCGTGAATTATT 58.552 29.630 0.00 0.00 0.00 1.40
2516 2653 7.970384 TCTGTCGAAAATTAAGCGTGAATTAT 58.030 30.769 0.00 0.00 0.00 1.28
2517 2654 7.354025 TCTGTCGAAAATTAAGCGTGAATTA 57.646 32.000 0.00 0.00 0.00 1.40
2518 2655 6.236017 TCTGTCGAAAATTAAGCGTGAATT 57.764 33.333 0.00 0.00 0.00 2.17
2519 2656 5.856126 TCTGTCGAAAATTAAGCGTGAAT 57.144 34.783 0.00 0.00 0.00 2.57
2597 2734 5.595814 AGGGGATAGTCTTCGGTATTCTA 57.404 43.478 0.00 0.00 0.00 2.10
2613 2755 2.852714 TCATGGCATTGAAAGGGGAT 57.147 45.000 0.00 0.00 0.00 3.85
2648 2790 4.786454 AGGGGCCTGTTATTGTTTAGACTA 59.214 41.667 0.84 0.00 0.00 2.59
2649 2791 3.591977 AGGGGCCTGTTATTGTTTAGACT 59.408 43.478 0.84 0.00 0.00 3.24
2654 2796 2.158385 TGTGAGGGGCCTGTTATTGTTT 60.158 45.455 0.84 0.00 0.00 2.83
2697 2839 3.209410 ACTACATGCTCTAATGCAAGGC 58.791 45.455 0.00 0.00 46.61 4.35
2778 2920 0.944386 TGCTGAAAAGAAGTGACGGC 59.056 50.000 0.00 0.00 0.00 5.68
2791 2933 3.329889 AGCGGGGATGGTGCTGAA 61.330 61.111 0.00 0.00 37.62 3.02
2860 3002 2.120718 AAGACCTCCGCCTGGACT 59.879 61.111 0.00 0.00 40.17 3.85
2988 3130 4.315803 ACCTTCAAAGTTACATGTCCTCG 58.684 43.478 0.00 0.00 0.00 4.63
3023 3165 2.673114 GCAATTCCGACGACCGCAA 61.673 57.895 0.00 0.00 36.84 4.85
3100 3242 3.455543 TGTGATGATGCAATGAGGGACTA 59.544 43.478 0.00 0.00 41.55 2.59
3273 3415 1.652563 GGACACTTTCCCGTTGTGC 59.347 57.895 0.00 0.00 38.70 4.57
3283 3425 2.038557 ACATTGCTACTCGGGACACTTT 59.961 45.455 0.00 0.00 0.00 2.66
3347 3489 3.562182 TCACACACAGACTCCTAAGTGA 58.438 45.455 0.00 0.00 35.28 3.41
3353 3495 4.630644 AAATCATCACACACAGACTCCT 57.369 40.909 0.00 0.00 0.00 3.69
3354 3496 5.700832 TGTTAAATCATCACACACAGACTCC 59.299 40.000 0.00 0.00 0.00 3.85
3355 3497 6.785488 TGTTAAATCATCACACACAGACTC 57.215 37.500 0.00 0.00 0.00 3.36
3356 3498 6.205464 CCTTGTTAAATCATCACACACAGACT 59.795 38.462 0.00 0.00 0.00 3.24
3357 3499 6.017109 ACCTTGTTAAATCATCACACACAGAC 60.017 38.462 0.00 0.00 0.00 3.51
3358 3500 6.061441 ACCTTGTTAAATCATCACACACAGA 58.939 36.000 0.00 0.00 0.00 3.41
3359 3501 6.317789 ACCTTGTTAAATCATCACACACAG 57.682 37.500 0.00 0.00 0.00 3.66
3360 3502 6.319911 TCAACCTTGTTAAATCATCACACACA 59.680 34.615 0.00 0.00 0.00 3.72
3361 3503 6.734137 TCAACCTTGTTAAATCATCACACAC 58.266 36.000 0.00 0.00 0.00 3.82
3362 3504 6.951062 TCAACCTTGTTAAATCATCACACA 57.049 33.333 0.00 0.00 0.00 3.72
3363 3505 7.592938 TCATCAACCTTGTTAAATCATCACAC 58.407 34.615 0.00 0.00 0.00 3.82
3364 3506 7.665145 TCTCATCAACCTTGTTAAATCATCACA 59.335 33.333 0.00 0.00 0.00 3.58
3365 3507 8.044060 TCTCATCAACCTTGTTAAATCATCAC 57.956 34.615 0.00 0.00 0.00 3.06
3366 3508 8.812513 ATCTCATCAACCTTGTTAAATCATCA 57.187 30.769 0.00 0.00 0.00 3.07
3368 3510 9.911788 ACTATCTCATCAACCTTGTTAAATCAT 57.088 29.630 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.