Multiple sequence alignment - TraesCS5B01G012800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G012800 chr5B 100.000 2699 0 0 1 2699 12657937 12660635 0.000000e+00 4985
1 TraesCS5B01G012800 chr5B 94.919 492 14 8 7 489 585039004 585039493 0.000000e+00 760
2 TraesCS5B01G012800 chr5B 78.701 1155 184 28 585 1699 12580726 12581858 0.000000e+00 713
3 TraesCS5B01G012800 chr5B 76.007 1217 236 41 521 1691 11605517 11604311 1.800000e-161 579
4 TraesCS5B01G012800 chr5A 91.599 1226 67 14 508 1699 9470478 9469255 0.000000e+00 1661
5 TraesCS5B01G012800 chr5A 91.279 688 42 7 2013 2699 9465133 9464463 0.000000e+00 922
6 TraesCS5B01G012800 chr5A 90.594 404 16 9 1761 2159 9469247 9468861 1.430000e-142 516
7 TraesCS5B01G012800 chr5A 87.273 165 10 3 1995 2159 9466158 9466005 7.680000e-41 178
8 TraesCS5B01G012800 chr5A 86.508 126 3 8 2005 2128 9465594 9465481 2.820000e-25 126
9 TraesCS5B01G012800 chr7B 96.122 490 14 4 1 485 125067588 125068077 0.000000e+00 795
10 TraesCS5B01G012800 chr7B 95.102 490 17 6 2 485 608306972 608307460 0.000000e+00 765
11 TraesCS5B01G012800 chr7B 88.773 383 40 2 2159 2539 592336896 592337277 1.460000e-127 466
12 TraesCS5B01G012800 chr2B 95.519 491 17 4 1 487 762461093 762461582 0.000000e+00 780
13 TraesCS5B01G012800 chr2B 94.919 492 20 4 1 487 439207363 439206872 0.000000e+00 765
14 TraesCS5B01G012800 chr2B 86.387 382 48 4 2159 2538 794315641 794316020 5.380000e-112 414
15 TraesCS5B01G012800 chr4A 95.473 486 17 4 5 485 665954245 665953760 0.000000e+00 771
16 TraesCS5B01G012800 chr4A 94.939 494 17 7 1 488 737540511 737540020 0.000000e+00 767
17 TraesCS5B01G012800 chr4A 87.863 379 44 2 2161 2537 137190975 137190597 6.860000e-121 444
18 TraesCS5B01G012800 chr1B 95.455 484 19 2 5 485 1488941 1489424 0.000000e+00 769
19 TraesCS5B01G012800 chr3B 94.939 494 18 6 1 489 743120930 743120439 0.000000e+00 767
20 TraesCS5B01G012800 chr5D 78.009 1155 196 30 583 1699 12168280 12167146 0.000000e+00 673
21 TraesCS5B01G012800 chr5D 75.886 1157 234 32 561 1691 11364840 11365977 1.410000e-152 549
22 TraesCS5B01G012800 chr5D 74.875 1198 247 41 521 1697 11576856 11575692 1.870000e-136 496
23 TraesCS5B01G012800 chr5D 86.316 380 46 6 2159 2537 515392322 515392696 2.500000e-110 409
24 TraesCS5B01G012800 chr5D 72.670 1116 255 28 602 1691 459750353 459751444 2.590000e-85 326
25 TraesCS5B01G012800 chr5D 78.697 399 71 9 1303 1691 459759176 459759570 1.240000e-63 254
26 TraesCS5B01G012800 chr5D 78.697 399 71 9 1303 1691 459763637 459764031 1.240000e-63 254
27 TraesCS5B01G012800 chrUn 76.125 1156 233 30 561 1691 312563165 312564302 1.400000e-157 566
28 TraesCS5B01G012800 chr1A 74.583 1200 247 41 521 1697 99726936 99725772 8.750000e-130 473
29 TraesCS5B01G012800 chr1D 87.105 380 48 1 2158 2537 296761499 296761877 1.920000e-116 429
30 TraesCS5B01G012800 chr6A 85.786 401 54 3 2159 2559 143092816 143092419 3.210000e-114 422
31 TraesCS5B01G012800 chr2D 86.280 379 48 4 2159 2536 34685206 34685581 2.500000e-110 409
32 TraesCS5B01G012800 chr6B 86.648 352 44 2 2184 2535 630592774 630592426 1.170000e-103 387


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G012800 chr5B 12657937 12660635 2698 False 4985.0 4985 100.0000 1 2699 1 chr5B.!!$F2 2698
1 TraesCS5B01G012800 chr5B 12580726 12581858 1132 False 713.0 713 78.7010 585 1699 1 chr5B.!!$F1 1114
2 TraesCS5B01G012800 chr5B 11604311 11605517 1206 True 579.0 579 76.0070 521 1691 1 chr5B.!!$R1 1170
3 TraesCS5B01G012800 chr5A 9464463 9470478 6015 True 680.6 1661 89.4506 508 2699 5 chr5A.!!$R1 2191
4 TraesCS5B01G012800 chr5D 12167146 12168280 1134 True 673.0 673 78.0090 583 1699 1 chr5D.!!$R2 1116
5 TraesCS5B01G012800 chr5D 11364840 11365977 1137 False 549.0 549 75.8860 561 1691 1 chr5D.!!$F1 1130
6 TraesCS5B01G012800 chr5D 11575692 11576856 1164 True 496.0 496 74.8750 521 1697 1 chr5D.!!$R1 1176
7 TraesCS5B01G012800 chr5D 459750353 459751444 1091 False 326.0 326 72.6700 602 1691 1 chr5D.!!$F2 1089
8 TraesCS5B01G012800 chrUn 312563165 312564302 1137 False 566.0 566 76.1250 561 1691 1 chrUn.!!$F1 1130
9 TraesCS5B01G012800 chr1A 99725772 99726936 1164 True 473.0 473 74.5830 521 1697 1 chr1A.!!$R1 1176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.179067 TGACTTTTATAGCCGGGCCG 60.179 55.0 21.46 21.46 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 1797 0.183492 TGAACCTGCTGTCTTGGCTT 59.817 50.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.347590 TCGGGAGAGGCAGGGAGA 61.348 66.667 0.00 0.00 0.00 3.71
32 33 2.837291 CGGGAGAGGCAGGGAGAG 60.837 72.222 0.00 0.00 0.00 3.20
33 34 2.445654 GGGAGAGGCAGGGAGAGG 60.446 72.222 0.00 0.00 0.00 3.69
34 35 2.445654 GGAGAGGCAGGGAGAGGG 60.446 72.222 0.00 0.00 0.00 4.30
35 36 2.693017 GAGAGGCAGGGAGAGGGA 59.307 66.667 0.00 0.00 0.00 4.20
36 37 1.457455 GAGAGGCAGGGAGAGGGAG 60.457 68.421 0.00 0.00 0.00 4.30
37 38 2.445654 GAGGCAGGGAGAGGGAGG 60.446 72.222 0.00 0.00 0.00 4.30
38 39 4.101077 AGGCAGGGAGAGGGAGGG 62.101 72.222 0.00 0.00 0.00 4.30
40 41 4.423209 GCAGGGAGAGGGAGGGGT 62.423 72.222 0.00 0.00 0.00 4.95
41 42 2.456840 CAGGGAGAGGGAGGGGTT 59.543 66.667 0.00 0.00 0.00 4.11
42 43 1.997874 CAGGGAGAGGGAGGGGTTG 60.998 68.421 0.00 0.00 0.00 3.77
43 44 2.692741 GGGAGAGGGAGGGGTTGG 60.693 72.222 0.00 0.00 0.00 3.77
44 45 2.454941 GGAGAGGGAGGGGTTGGA 59.545 66.667 0.00 0.00 0.00 3.53
45 46 1.996187 GGAGAGGGAGGGGTTGGAC 60.996 68.421 0.00 0.00 0.00 4.02
46 47 2.284699 AGAGGGAGGGGTTGGACG 60.285 66.667 0.00 0.00 0.00 4.79
47 48 3.400054 GAGGGAGGGGTTGGACGG 61.400 72.222 0.00 0.00 0.00 4.79
73 74 4.035102 GGGGACTGGTCTGGGCAC 62.035 72.222 0.67 0.00 0.00 5.01
74 75 3.249189 GGGACTGGTCTGGGCACA 61.249 66.667 0.00 0.00 0.00 4.57
75 76 2.348998 GGACTGGTCTGGGCACAG 59.651 66.667 10.61 10.61 46.30 3.66
76 77 2.348998 GACTGGTCTGGGCACAGG 59.651 66.667 17.80 1.65 44.99 4.00
81 82 4.008933 GTCTGGGCACAGGCGAGT 62.009 66.667 17.80 0.00 44.99 4.18
82 83 4.007644 TCTGGGCACAGGCGAGTG 62.008 66.667 17.80 8.48 44.99 3.51
85 86 4.767255 GGGCACAGGCGAGTGGAG 62.767 72.222 13.56 0.00 42.47 3.86
86 87 4.767255 GGCACAGGCGAGTGGAGG 62.767 72.222 13.56 0.00 42.47 4.30
94 95 4.803426 CGAGTGGAGGCCGCTGAC 62.803 72.222 6.40 3.69 45.19 3.51
95 96 3.386237 GAGTGGAGGCCGCTGACT 61.386 66.667 6.40 8.92 45.19 3.41
96 97 2.925170 AGTGGAGGCCGCTGACTT 60.925 61.111 6.40 0.00 43.37 3.01
97 98 2.032681 GTGGAGGCCGCTGACTTT 59.967 61.111 6.40 0.00 0.00 2.66
98 99 1.600916 GTGGAGGCCGCTGACTTTT 60.601 57.895 6.40 0.00 0.00 2.27
99 100 0.321298 GTGGAGGCCGCTGACTTTTA 60.321 55.000 6.40 0.00 0.00 1.52
100 101 0.618458 TGGAGGCCGCTGACTTTTAT 59.382 50.000 6.40 0.00 0.00 1.40
101 102 1.834896 TGGAGGCCGCTGACTTTTATA 59.165 47.619 6.40 0.00 0.00 0.98
102 103 2.158957 TGGAGGCCGCTGACTTTTATAG 60.159 50.000 6.40 0.00 0.00 1.31
103 104 1.867865 GAGGCCGCTGACTTTTATAGC 59.132 52.381 0.00 0.00 0.00 2.97
104 105 0.945099 GGCCGCTGACTTTTATAGCC 59.055 55.000 0.00 0.00 34.02 3.93
105 106 0.582005 GCCGCTGACTTTTATAGCCG 59.418 55.000 0.00 0.00 34.02 5.52
106 107 1.217882 CCGCTGACTTTTATAGCCGG 58.782 55.000 0.00 0.00 34.02 6.13
107 108 1.217882 CGCTGACTTTTATAGCCGGG 58.782 55.000 2.18 0.00 34.02 5.73
108 109 0.945099 GCTGACTTTTATAGCCGGGC 59.055 55.000 12.11 12.11 0.00 6.13
109 110 1.594331 CTGACTTTTATAGCCGGGCC 58.406 55.000 17.02 0.00 0.00 5.80
110 111 0.179067 TGACTTTTATAGCCGGGCCG 60.179 55.000 21.46 21.46 0.00 6.13
111 112 1.504647 GACTTTTATAGCCGGGCCGC 61.505 60.000 23.20 16.52 0.00 6.53
112 113 2.589442 TTTTATAGCCGGGCCGCG 60.589 61.111 23.20 15.41 0.00 6.46
132 133 3.812614 CGTGTGTACGCGTGCGAG 61.813 66.667 24.59 9.33 44.11 5.03
133 134 3.467119 GTGTGTACGCGTGCGAGG 61.467 66.667 24.59 0.00 42.83 4.63
134 135 4.710695 TGTGTACGCGTGCGAGGG 62.711 66.667 24.59 0.00 42.83 4.30
135 136 4.409218 GTGTACGCGTGCGAGGGA 62.409 66.667 24.59 0.04 42.83 4.20
136 137 3.672447 TGTACGCGTGCGAGGGAA 61.672 61.111 24.59 0.00 42.83 3.97
137 138 2.879462 GTACGCGTGCGAGGGAAG 60.879 66.667 24.59 0.00 42.83 3.46
138 139 4.124351 TACGCGTGCGAGGGAAGG 62.124 66.667 24.59 0.00 42.83 3.46
141 142 4.821589 GCGTGCGAGGGAAGGGAG 62.822 72.222 0.00 0.00 0.00 4.30
142 143 4.148825 CGTGCGAGGGAAGGGAGG 62.149 72.222 0.00 0.00 0.00 4.30
143 144 4.475135 GTGCGAGGGAAGGGAGGC 62.475 72.222 0.00 0.00 0.00 4.70
146 147 3.839432 CGAGGGAAGGGAGGCGTC 61.839 72.222 0.00 0.00 0.00 5.19
147 148 2.683933 GAGGGAAGGGAGGCGTCA 60.684 66.667 8.91 0.00 0.00 4.35
148 149 2.685380 AGGGAAGGGAGGCGTCAG 60.685 66.667 8.91 0.00 0.00 3.51
149 150 4.475135 GGGAAGGGAGGCGTCAGC 62.475 72.222 8.91 0.00 44.18 4.26
150 151 4.821589 GGAAGGGAGGCGTCAGCG 62.822 72.222 8.91 0.00 46.35 5.18
192 193 2.838386 CGTGAGGAATCAATGGCAAG 57.162 50.000 0.00 0.00 0.00 4.01
193 194 1.402968 CGTGAGGAATCAATGGCAAGG 59.597 52.381 0.00 0.00 0.00 3.61
194 195 1.135721 GTGAGGAATCAATGGCAAGGC 59.864 52.381 0.00 0.00 0.00 4.35
195 196 1.006281 TGAGGAATCAATGGCAAGGCT 59.994 47.619 0.00 0.00 0.00 4.58
196 197 1.407979 GAGGAATCAATGGCAAGGCTG 59.592 52.381 0.00 0.00 0.00 4.85
197 198 1.006281 AGGAATCAATGGCAAGGCTGA 59.994 47.619 0.00 0.00 0.00 4.26
198 199 1.135721 GGAATCAATGGCAAGGCTGAC 59.864 52.381 0.00 0.00 0.00 3.51
199 200 1.135721 GAATCAATGGCAAGGCTGACC 59.864 52.381 0.00 0.00 0.00 4.02
200 201 1.033746 ATCAATGGCAAGGCTGACCG 61.034 55.000 0.00 0.00 42.76 4.79
201 202 2.361610 AATGGCAAGGCTGACCGG 60.362 61.111 0.00 0.00 42.76 5.28
222 223 3.357504 GCAGCCTTGCCATTGATTC 57.642 52.632 0.00 0.00 44.74 2.52
223 224 0.179092 GCAGCCTTGCCATTGATTCC 60.179 55.000 0.00 0.00 44.74 3.01
224 225 0.462789 CAGCCTTGCCATTGATTCCC 59.537 55.000 0.00 0.00 0.00 3.97
225 226 0.688749 AGCCTTGCCATTGATTCCCC 60.689 55.000 0.00 0.00 0.00 4.81
226 227 2.019897 GCCTTGCCATTGATTCCCCG 62.020 60.000 0.00 0.00 0.00 5.73
227 228 1.438814 CTTGCCATTGATTCCCCGC 59.561 57.895 0.00 0.00 0.00 6.13
228 229 2.340453 CTTGCCATTGATTCCCCGCG 62.340 60.000 0.00 0.00 0.00 6.46
229 230 3.595758 GCCATTGATTCCCCGCGG 61.596 66.667 21.04 21.04 0.00 6.46
230 231 2.906897 CCATTGATTCCCCGCGGG 60.907 66.667 37.99 37.99 46.11 6.13
245 246 2.440247 GGGAACCGAGGCCATTGG 60.440 66.667 5.01 5.86 40.86 3.16
246 247 2.440247 GGAACCGAGGCCATTGGG 60.440 66.667 5.01 2.18 36.65 4.12
247 248 2.440247 GAACCGAGGCCATTGGGG 60.440 66.667 5.01 0.07 36.65 4.96
248 249 4.060667 AACCGAGGCCATTGGGGG 62.061 66.667 5.01 0.00 36.65 5.40
250 251 3.738481 CCGAGGCCATTGGGGGAA 61.738 66.667 5.01 0.00 37.04 3.97
251 252 2.124151 CGAGGCCATTGGGGGAAG 60.124 66.667 5.01 0.00 37.04 3.46
252 253 2.679342 CGAGGCCATTGGGGGAAGA 61.679 63.158 5.01 0.00 37.04 2.87
253 254 1.076705 GAGGCCATTGGGGGAAGAC 60.077 63.158 5.01 0.00 37.04 3.01
254 255 2.440247 GGCCATTGGGGGAAGACG 60.440 66.667 4.53 0.00 37.04 4.18
255 256 2.674754 GCCATTGGGGGAAGACGA 59.325 61.111 4.53 0.00 37.04 4.20
256 257 1.452108 GCCATTGGGGGAAGACGAG 60.452 63.158 4.53 0.00 37.04 4.18
257 258 1.224592 CCATTGGGGGAAGACGAGG 59.775 63.158 0.00 0.00 0.00 4.63
258 259 1.452108 CATTGGGGGAAGACGAGGC 60.452 63.158 0.00 0.00 0.00 4.70
259 260 3.031417 ATTGGGGGAAGACGAGGCG 62.031 63.158 0.00 0.00 0.00 5.52
264 265 4.856607 GGAAGACGAGGCGCCGAG 62.857 72.222 23.20 21.36 0.00 4.63
265 266 4.117661 GAAGACGAGGCGCCGAGT 62.118 66.667 25.73 25.73 0.00 4.18
266 267 4.117661 AAGACGAGGCGCCGAGTC 62.118 66.667 34.60 34.60 0.00 3.36
293 294 3.670377 GCTGGCCCGCGTCTTTTT 61.670 61.111 2.41 0.00 0.00 1.94
294 295 2.561373 CTGGCCCGCGTCTTTTTC 59.439 61.111 4.92 0.00 0.00 2.29
295 296 3.308878 CTGGCCCGCGTCTTTTTCG 62.309 63.158 4.92 0.00 0.00 3.46
301 302 2.051703 GCGTCTTTTTCGCGCCAA 60.052 55.556 0.00 0.00 44.67 4.52
302 303 1.655959 GCGTCTTTTTCGCGCCAAA 60.656 52.632 0.00 0.00 44.67 3.28
303 304 1.203600 GCGTCTTTTTCGCGCCAAAA 61.204 50.000 8.92 8.92 44.67 2.44
304 305 0.496851 CGTCTTTTTCGCGCCAAAAC 59.503 50.000 12.58 1.73 0.00 2.43
305 306 1.551145 GTCTTTTTCGCGCCAAAACA 58.449 45.000 12.58 0.00 0.00 2.83
306 307 1.516864 GTCTTTTTCGCGCCAAAACAG 59.483 47.619 12.58 12.56 0.00 3.16
307 308 0.229500 CTTTTTCGCGCCAAAACAGC 59.771 50.000 12.58 0.00 0.00 4.40
308 309 0.179124 TTTTTCGCGCCAAAACAGCT 60.179 45.000 12.58 0.00 0.00 4.24
309 310 0.593773 TTTTCGCGCCAAAACAGCTC 60.594 50.000 8.92 0.00 0.00 4.09
310 311 2.709629 TTTCGCGCCAAAACAGCTCG 62.710 55.000 0.00 0.00 39.68 5.03
313 314 4.404654 CGCCAAAACAGCTCGCCC 62.405 66.667 0.00 0.00 0.00 6.13
314 315 4.056125 GCCAAAACAGCTCGCCCC 62.056 66.667 0.00 0.00 0.00 5.80
315 316 3.737172 CCAAAACAGCTCGCCCCG 61.737 66.667 0.00 0.00 0.00 5.73
316 317 3.737172 CAAAACAGCTCGCCCCGG 61.737 66.667 0.00 0.00 0.00 5.73
383 384 1.286880 CTGTTTTCAGCCCAAGCCG 59.713 57.895 0.00 0.00 41.24 5.52
384 385 2.146073 CTGTTTTCAGCCCAAGCCGG 62.146 60.000 0.00 0.00 41.24 6.13
391 392 3.758931 GCCCAAGCCGGCGAAAAT 61.759 61.111 23.20 0.00 39.64 1.82
392 393 2.489751 CCCAAGCCGGCGAAAATC 59.510 61.111 23.20 0.00 0.00 2.17
393 394 2.100216 CCAAGCCGGCGAAAATCG 59.900 61.111 23.20 5.28 43.89 3.34
394 395 2.395360 CCAAGCCGGCGAAAATCGA 61.395 57.895 23.20 0.00 43.74 3.59
395 396 1.060937 CAAGCCGGCGAAAATCGAG 59.939 57.895 23.20 0.10 43.74 4.04
396 397 2.750888 AAGCCGGCGAAAATCGAGC 61.751 57.895 23.20 0.00 43.74 5.03
397 398 3.195698 GCCGGCGAAAATCGAGCT 61.196 61.111 12.58 0.00 43.74 4.09
398 399 3.006706 CCGGCGAAAATCGAGCTC 58.993 61.111 9.30 2.73 43.74 4.09
399 400 2.526120 CCGGCGAAAATCGAGCTCC 61.526 63.158 9.30 0.00 43.74 4.70
400 401 1.519455 CGGCGAAAATCGAGCTCCT 60.519 57.895 8.47 0.00 43.74 3.69
401 402 1.756375 CGGCGAAAATCGAGCTCCTG 61.756 60.000 8.47 0.00 43.74 3.86
402 403 1.432270 GGCGAAAATCGAGCTCCTGG 61.432 60.000 8.47 0.00 43.74 4.45
403 404 1.432270 GCGAAAATCGAGCTCCTGGG 61.432 60.000 8.47 0.00 43.74 4.45
404 405 0.811616 CGAAAATCGAGCTCCTGGGG 60.812 60.000 8.47 0.00 43.74 4.96
405 406 0.464554 GAAAATCGAGCTCCTGGGGG 60.465 60.000 8.47 0.00 0.00 5.40
406 407 2.558380 AAAATCGAGCTCCTGGGGGC 62.558 60.000 8.47 2.79 0.00 5.80
413 414 4.087892 CTCCTGGGGGCGTGACTG 62.088 72.222 0.00 0.00 0.00 3.51
422 423 3.284449 GCGTGACTGGGCCGTTTT 61.284 61.111 0.00 0.00 0.00 2.43
423 424 2.841160 GCGTGACTGGGCCGTTTTT 61.841 57.895 0.00 0.00 0.00 1.94
463 464 2.833244 CCTGGAGAGGCCTTCCTAG 58.167 63.158 25.19 20.68 44.46 3.02
464 465 0.762461 CCTGGAGAGGCCTTCCTAGG 60.762 65.000 25.19 23.70 44.46 3.02
465 466 0.762461 CTGGAGAGGCCTTCCTAGGG 60.762 65.000 25.19 14.08 44.46 3.53
466 467 1.460497 GGAGAGGCCTTCCTAGGGG 60.460 68.421 20.58 4.10 44.46 4.79
467 468 2.040359 AGAGGCCTTCCTAGGGGC 60.040 66.667 18.27 18.27 44.46 5.80
489 490 1.902938 GGCTGGAGATGCCCTAAATC 58.097 55.000 0.00 0.00 44.32 2.17
490 491 1.517242 GCTGGAGATGCCCTAAATCG 58.483 55.000 0.00 0.00 34.97 3.34
491 492 1.879796 GCTGGAGATGCCCTAAATCGG 60.880 57.143 0.00 0.00 34.97 4.18
496 497 1.630878 AGATGCCCTAAATCGGGATCC 59.369 52.381 1.92 1.92 46.45 3.36
497 498 3.691071 AGATGCCCTAAATCGGGATCCC 61.691 54.545 22.12 22.12 46.45 3.85
501 502 2.861147 CCTAAATCGGGATCCCCTTC 57.139 55.000 25.73 0.00 42.67 3.46
502 503 2.054799 CCTAAATCGGGATCCCCTTCA 58.945 52.381 25.73 7.03 42.67 3.02
503 504 2.224548 CCTAAATCGGGATCCCCTTCAC 60.225 54.545 25.73 0.00 42.67 3.18
504 505 1.295020 AAATCGGGATCCCCTTCACA 58.705 50.000 25.73 2.46 42.67 3.58
505 506 0.546598 AATCGGGATCCCCTTCACAC 59.453 55.000 25.73 0.00 42.67 3.82
506 507 0.326618 ATCGGGATCCCCTTCACACT 60.327 55.000 25.73 0.00 42.67 3.55
516 517 2.432510 CCCCTTCACACTCTCATAGTCC 59.567 54.545 0.00 0.00 35.76 3.85
612 619 1.216710 GGACTGGTCGAGCCTTCAG 59.783 63.158 12.85 5.12 38.35 3.02
726 733 4.778143 GATGACCCGCCCACGCTT 62.778 66.667 0.00 0.00 38.22 4.68
777 784 1.403814 TCTCCTGCTACCGGATCTTG 58.596 55.000 9.46 0.00 0.00 3.02
875 882 4.696172 GTTCGTGGTCGCGCAACG 62.696 66.667 19.80 19.80 45.62 4.10
957 964 2.510906 GTGCGCATCCCCCTGTAT 59.489 61.111 15.91 0.00 0.00 2.29
969 997 2.432300 CCTGTATCCCGGCGTCCTT 61.432 63.158 6.01 0.00 0.00 3.36
1055 1083 3.682292 CTGCCCTAACGTCAGGCCC 62.682 68.421 17.75 4.21 46.55 5.80
1100 1128 2.780643 CATCGACTGCTGGTTGCG 59.219 61.111 0.00 0.00 46.63 4.85
1211 1245 0.237498 GTGTGCTACAAGCCGGAAAC 59.763 55.000 5.05 0.00 41.51 2.78
1257 1306 5.763698 TCTTACCATTCGACATCTCGTCTAT 59.236 40.000 0.00 0.00 42.98 1.98
1260 1309 3.004839 CCATTCGACATCTCGTCTATGGT 59.995 47.826 11.84 0.00 43.11 3.55
1261 1310 3.965292 TTCGACATCTCGTCTATGGTC 57.035 47.619 0.00 0.00 42.98 4.02
1262 1311 2.914059 TCGACATCTCGTCTATGGTCA 58.086 47.619 0.00 0.00 42.98 4.02
1265 1314 2.032620 ACATCTCGTCTATGGTCACCC 58.967 52.381 0.00 0.00 0.00 4.61
1266 1315 4.497496 GACATCTCGTCTATGGTCACCCA 61.497 52.174 0.00 0.00 42.75 4.51
1353 1429 2.082231 CTGCTGATGGTGAAGAGGTTG 58.918 52.381 0.00 0.00 0.00 3.77
1581 1663 3.782244 CGCAGCGTCCTTCAGCAC 61.782 66.667 6.65 0.00 35.48 4.40
1699 1790 4.142315 CCTGCATTTGGTACCTTCATTGAG 60.142 45.833 14.36 1.26 0.00 3.02
1700 1791 4.661222 TGCATTTGGTACCTTCATTGAGA 58.339 39.130 14.36 0.00 0.00 3.27
1702 1793 6.422333 TGCATTTGGTACCTTCATTGAGATA 58.578 36.000 14.36 0.00 0.00 1.98
1704 1795 6.514048 GCATTTGGTACCTTCATTGAGATAGC 60.514 42.308 14.36 0.00 0.00 2.97
1705 1796 4.689612 TGGTACCTTCATTGAGATAGCC 57.310 45.455 14.36 0.00 0.00 3.93
1706 1797 4.037222 TGGTACCTTCATTGAGATAGCCA 58.963 43.478 14.36 0.00 0.00 4.75
1707 1798 4.473196 TGGTACCTTCATTGAGATAGCCAA 59.527 41.667 14.36 0.00 0.00 4.52
1708 1799 5.059833 GGTACCTTCATTGAGATAGCCAAG 58.940 45.833 4.06 0.00 0.00 3.61
1709 1800 3.549794 ACCTTCATTGAGATAGCCAAGC 58.450 45.455 0.00 0.00 0.00 4.01
1710 1801 2.883386 CCTTCATTGAGATAGCCAAGCC 59.117 50.000 0.00 0.00 0.00 4.35
1711 1802 3.548770 CTTCATTGAGATAGCCAAGCCA 58.451 45.455 0.00 0.00 0.00 4.75
1712 1803 3.650281 TCATTGAGATAGCCAAGCCAA 57.350 42.857 0.00 0.00 0.00 4.52
1713 1804 3.548770 TCATTGAGATAGCCAAGCCAAG 58.451 45.455 0.00 0.00 0.00 3.61
1714 1805 3.200605 TCATTGAGATAGCCAAGCCAAGA 59.799 43.478 0.00 0.00 0.00 3.02
1715 1806 2.698855 TGAGATAGCCAAGCCAAGAC 57.301 50.000 0.00 0.00 0.00 3.01
1716 1807 1.908619 TGAGATAGCCAAGCCAAGACA 59.091 47.619 0.00 0.00 0.00 3.41
1717 1808 2.093288 TGAGATAGCCAAGCCAAGACAG 60.093 50.000 0.00 0.00 0.00 3.51
1718 1809 1.020437 GATAGCCAAGCCAAGACAGC 58.980 55.000 0.00 0.00 0.00 4.40
1719 1810 0.329261 ATAGCCAAGCCAAGACAGCA 59.671 50.000 0.00 0.00 0.00 4.41
1720 1811 0.321919 TAGCCAAGCCAAGACAGCAG 60.322 55.000 0.00 0.00 0.00 4.24
1721 1812 2.633509 GCCAAGCCAAGACAGCAGG 61.634 63.158 0.00 0.00 0.00 4.85
1722 1813 1.228367 CCAAGCCAAGACAGCAGGT 60.228 57.895 0.00 0.00 0.00 4.00
1723 1814 0.825010 CCAAGCCAAGACAGCAGGTT 60.825 55.000 0.00 0.00 0.00 3.50
1724 1815 0.595095 CAAGCCAAGACAGCAGGTTC 59.405 55.000 0.00 0.00 0.00 3.62
1725 1816 0.183492 AAGCCAAGACAGCAGGTTCA 59.817 50.000 0.00 0.00 0.00 3.18
1726 1817 0.403271 AGCCAAGACAGCAGGTTCAT 59.597 50.000 0.00 0.00 0.00 2.57
1727 1818 0.524862 GCCAAGACAGCAGGTTCATG 59.475 55.000 0.00 0.00 0.00 3.07
1728 1819 0.524862 CCAAGACAGCAGGTTCATGC 59.475 55.000 1.05 1.05 46.88 4.06
1737 1828 3.581024 GCAGGTTCATGCATTTTGAGA 57.419 42.857 0.00 0.00 45.77 3.27
1738 1829 3.248266 GCAGGTTCATGCATTTTGAGAC 58.752 45.455 0.00 0.00 45.77 3.36
1739 1830 3.305539 GCAGGTTCATGCATTTTGAGACA 60.306 43.478 0.00 0.00 45.77 3.41
1740 1831 4.619863 GCAGGTTCATGCATTTTGAGACAT 60.620 41.667 0.00 0.00 45.77 3.06
1741 1832 5.100259 CAGGTTCATGCATTTTGAGACATC 58.900 41.667 0.00 0.00 0.00 3.06
1742 1833 4.768448 AGGTTCATGCATTTTGAGACATCA 59.232 37.500 0.00 0.00 0.00 3.07
1743 1834 5.421056 AGGTTCATGCATTTTGAGACATCAT 59.579 36.000 0.00 0.00 34.73 2.45
1744 1835 5.747197 GGTTCATGCATTTTGAGACATCATC 59.253 40.000 0.00 0.00 34.73 2.92
1745 1836 6.327154 GTTCATGCATTTTGAGACATCATCA 58.673 36.000 0.00 0.00 34.73 3.07
1746 1837 6.518208 TCATGCATTTTGAGACATCATCAA 57.482 33.333 0.00 0.00 34.73 2.57
1747 1838 6.560711 TCATGCATTTTGAGACATCATCAAG 58.439 36.000 0.00 0.00 37.91 3.02
1748 1839 6.376018 TCATGCATTTTGAGACATCATCAAGA 59.624 34.615 0.00 0.00 37.91 3.02
1749 1840 6.769134 TGCATTTTGAGACATCATCAAGAT 57.231 33.333 0.00 0.00 37.91 2.40
1750 1841 7.165460 TGCATTTTGAGACATCATCAAGATT 57.835 32.000 0.00 0.00 37.91 2.40
1751 1842 7.608153 TGCATTTTGAGACATCATCAAGATTT 58.392 30.769 0.00 0.00 37.91 2.17
1752 1843 8.741841 TGCATTTTGAGACATCATCAAGATTTA 58.258 29.630 0.00 0.00 37.91 1.40
1753 1844 9.745880 GCATTTTGAGACATCATCAAGATTTAT 57.254 29.630 0.00 0.00 37.91 1.40
1757 1848 9.992910 TTTGAGACATCATCAAGATTTATTTCG 57.007 29.630 0.00 0.00 37.91 3.46
1758 1849 8.947055 TGAGACATCATCAAGATTTATTTCGA 57.053 30.769 0.00 0.00 33.72 3.71
1759 1850 9.551734 TGAGACATCATCAAGATTTATTTCGAT 57.448 29.630 0.00 0.00 33.72 3.59
1788 1884 4.493547 GTTCAGTCTGAGACTTGATGGAG 58.506 47.826 13.34 0.00 41.37 3.86
1795 1891 6.321181 AGTCTGAGACTTGATGGAGTAGATTC 59.679 42.308 9.77 0.00 40.28 2.52
1800 1896 5.669447 AGACTTGATGGAGTAGATTCCCATT 59.331 40.000 0.00 0.00 40.50 3.16
1817 1913 3.322254 CCCATTGCTAGTAGTTCCGATCT 59.678 47.826 0.00 0.00 0.00 2.75
1818 1914 4.551388 CCATTGCTAGTAGTTCCGATCTC 58.449 47.826 0.00 0.00 0.00 2.75
1819 1915 3.965292 TTGCTAGTAGTTCCGATCTCG 57.035 47.619 0.00 0.00 39.44 4.04
1820 1916 3.189618 TGCTAGTAGTTCCGATCTCGA 57.810 47.619 0.22 0.00 43.02 4.04
1828 1924 4.035278 AGTTCCGATCTCGATCAGTTTC 57.965 45.455 0.22 0.00 43.02 2.78
1858 1954 2.588856 AATTAGAGCCGGCCGGTGTC 62.589 60.000 42.53 35.97 37.65 3.67
1861 1957 2.842188 TAGAGCCGGCCGGTGTCTAA 62.842 60.000 36.73 26.30 37.65 2.10
1874 1970 5.107065 GCCGGTGTCTAATATAATGTTGCTC 60.107 44.000 1.90 0.00 0.00 4.26
1885 1981 1.303309 ATGTTGCTCTTATCGCTGCC 58.697 50.000 0.00 0.00 0.00 4.85
1892 1988 1.000827 CTCTTATCGCTGCCATCGTCT 60.001 52.381 0.00 0.00 0.00 4.18
1903 1999 1.996292 CCATCGTCTGTCGTCATTGT 58.004 50.000 0.00 0.00 40.80 2.71
1931 2027 3.078305 TGGGGTTATGGGAAATTGGAAGT 59.922 43.478 0.00 0.00 0.00 3.01
2036 2132 5.153513 GTGTCATTGTTGTCGTTGCAATAT 58.846 37.500 0.59 0.00 32.33 1.28
2037 2133 6.073003 TGTGTCATTGTTGTCGTTGCAATATA 60.073 34.615 0.59 0.00 32.33 0.86
2038 2134 6.966632 GTGTCATTGTTGTCGTTGCAATATAT 59.033 34.615 0.59 0.00 32.33 0.86
2039 2135 8.119845 GTGTCATTGTTGTCGTTGCAATATATA 58.880 33.333 0.59 0.00 32.33 0.86
2040 2136 8.669243 TGTCATTGTTGTCGTTGCAATATATAA 58.331 29.630 0.59 0.00 32.33 0.98
2041 2137 9.158364 GTCATTGTTGTCGTTGCAATATATAAG 57.842 33.333 0.59 0.00 32.33 1.73
2042 2138 7.855409 TCATTGTTGTCGTTGCAATATATAAGC 59.145 33.333 0.59 3.72 32.33 3.09
2043 2139 6.055231 TGTTGTCGTTGCAATATATAAGCC 57.945 37.500 0.59 0.00 0.00 4.35
2044 2140 5.820423 TGTTGTCGTTGCAATATATAAGCCT 59.180 36.000 0.59 0.00 0.00 4.58
2045 2141 6.987404 TGTTGTCGTTGCAATATATAAGCCTA 59.013 34.615 0.59 0.00 0.00 3.93
2046 2142 7.170828 TGTTGTCGTTGCAATATATAAGCCTAG 59.829 37.037 0.59 0.00 0.00 3.02
2047 2143 6.755206 TGTCGTTGCAATATATAAGCCTAGT 58.245 36.000 0.59 0.00 0.00 2.57
2048 2144 7.214381 TGTCGTTGCAATATATAAGCCTAGTT 58.786 34.615 0.59 0.00 0.00 2.24
2049 2145 8.361889 TGTCGTTGCAATATATAAGCCTAGTTA 58.638 33.333 0.59 0.00 0.00 2.24
2130 6078 8.078596 ACTGTTTTTCAAGCTCATTTCATCTAC 58.921 33.333 0.00 0.00 0.00 2.59
2131 6079 7.939782 TGTTTTTCAAGCTCATTTCATCTACA 58.060 30.769 0.00 0.00 0.00 2.74
2169 6117 3.117663 ACTCTTTAGACTTTTGGCACCCA 60.118 43.478 0.00 0.00 0.00 4.51
2172 6120 0.251165 TAGACTTTTGGCACCCAGGC 60.251 55.000 0.00 0.00 44.50 4.85
2198 6146 6.258507 GCATATGCTCCTGGTTTTTAAAATGG 59.741 38.462 20.64 3.01 38.21 3.16
2250 6198 3.519908 TCTGACAAAATGTTTCGCTCG 57.480 42.857 0.00 0.00 0.00 5.03
2258 6206 5.049680 ACAAAATGTTTCGCTCGTACATCTT 60.050 36.000 11.01 4.25 31.63 2.40
2259 6207 4.584029 AATGTTTCGCTCGTACATCTTG 57.416 40.909 11.01 0.00 31.63 3.02
2262 6210 2.984471 GTTTCGCTCGTACATCTTGACA 59.016 45.455 0.00 0.00 0.00 3.58
2263 6211 3.503827 TTCGCTCGTACATCTTGACAT 57.496 42.857 0.00 0.00 0.00 3.06
2282 6230 8.456904 TTGACATTATACGTACTCACAAAGTC 57.543 34.615 0.00 1.52 39.55 3.01
2283 6231 7.595604 TGACATTATACGTACTCACAAAGTCA 58.404 34.615 0.00 3.96 39.55 3.41
2297 6245 3.794564 ACAAAGTCATTTCGCGAAAAACC 59.205 39.130 35.06 24.10 33.56 3.27
2310 6258 4.259889 GCGAAAAACCGTCAATTTTTGTG 58.740 39.130 0.46 0.00 38.92 3.33
2312 6260 5.669111 GCGAAAAACCGTCAATTTTTGTGTT 60.669 36.000 0.46 0.00 38.92 3.32
2313 6261 5.725768 CGAAAAACCGTCAATTTTTGTGTTG 59.274 36.000 0.46 0.00 38.92 3.33
2322 6270 6.541086 GTCAATTTTTGTGTTGCATGTGAAA 58.459 32.000 0.00 0.00 0.00 2.69
2334 6282 7.750014 GTGTTGCATGTGAAAAAGACAAAATTT 59.250 29.630 0.00 0.00 0.00 1.82
2358 6306 6.388619 AGTATTAAAAAGGGCTCTTCAGGA 57.611 37.500 0.00 0.00 31.82 3.86
2386 6334 8.739972 ACATTTCTTTGTCTTCTTTACACAAGT 58.260 29.630 0.00 0.00 31.81 3.16
2389 6337 7.303634 TCTTTGTCTTCTTTACACAAGTCAC 57.696 36.000 0.00 0.00 31.81 3.67
2399 6347 3.715628 ACACAAGTCACAGAAAATGCC 57.284 42.857 0.00 0.00 0.00 4.40
2427 6375 1.661197 CAAAACTTGGCGTGCGCAT 60.661 52.632 15.91 0.00 44.11 4.73
2495 6444 6.462552 TTGACATCTTGACATGTTTTTCCA 57.537 33.333 0.00 0.00 37.11 3.53
2505 6454 5.009911 TGACATGTTTTTCCAATGACAGGAG 59.990 40.000 0.00 0.00 36.33 3.69
2537 6486 3.244146 CCATGTGCCAAAGTGAATTTCCA 60.244 43.478 0.00 0.00 0.00 3.53
2574 6523 5.319139 CACATACTCGCTGTTTGATTTCTG 58.681 41.667 6.03 0.00 32.96 3.02
2575 6524 2.977405 ACTCGCTGTTTGATTTCTGC 57.023 45.000 0.00 0.00 0.00 4.26
2586 6535 2.703416 TGATTTCTGCGTGCTTCTCAT 58.297 42.857 0.00 0.00 0.00 2.90
2587 6536 3.076621 TGATTTCTGCGTGCTTCTCATT 58.923 40.909 0.00 0.00 0.00 2.57
2588 6537 3.503363 TGATTTCTGCGTGCTTCTCATTT 59.497 39.130 0.00 0.00 0.00 2.32
2646 6595 9.617523 TTTCAATCATGTAAGAGATATTCTGCA 57.382 29.630 0.00 0.00 35.91 4.41
2685 6634 9.148104 TGAGATTTGAGATTCATCTATAATGCG 57.852 33.333 0.00 0.00 37.25 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.837291 CTCCCTGCCTCTCCCGAG 60.837 72.222 0.00 0.00 37.01 4.63
14 15 3.347590 TCTCCCTGCCTCTCCCGA 61.348 66.667 0.00 0.00 0.00 5.14
15 16 2.837291 CTCTCCCTGCCTCTCCCG 60.837 72.222 0.00 0.00 0.00 5.14
16 17 2.445654 CCTCTCCCTGCCTCTCCC 60.446 72.222 0.00 0.00 0.00 4.30
17 18 2.445654 CCCTCTCCCTGCCTCTCC 60.446 72.222 0.00 0.00 0.00 3.71
18 19 1.457455 CTCCCTCTCCCTGCCTCTC 60.457 68.421 0.00 0.00 0.00 3.20
19 20 2.695597 CTCCCTCTCCCTGCCTCT 59.304 66.667 0.00 0.00 0.00 3.69
20 21 2.445654 CCTCCCTCTCCCTGCCTC 60.446 72.222 0.00 0.00 0.00 4.70
21 22 4.101077 CCCTCCCTCTCCCTGCCT 62.101 72.222 0.00 0.00 0.00 4.75
23 24 3.952799 AACCCCTCCCTCTCCCTGC 62.953 68.421 0.00 0.00 0.00 4.85
24 25 1.997874 CAACCCCTCCCTCTCCCTG 60.998 68.421 0.00 0.00 0.00 4.45
25 26 2.456840 CAACCCCTCCCTCTCCCT 59.543 66.667 0.00 0.00 0.00 4.20
26 27 2.692741 CCAACCCCTCCCTCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
27 28 1.996187 GTCCAACCCCTCCCTCTCC 60.996 68.421 0.00 0.00 0.00 3.71
28 29 2.359967 CGTCCAACCCCTCCCTCTC 61.360 68.421 0.00 0.00 0.00 3.20
29 30 2.284699 CGTCCAACCCCTCCCTCT 60.285 66.667 0.00 0.00 0.00 3.69
30 31 3.400054 CCGTCCAACCCCTCCCTC 61.400 72.222 0.00 0.00 0.00 4.30
56 57 4.035102 GTGCCCAGACCAGTCCCC 62.035 72.222 0.00 0.00 0.00 4.81
57 58 3.249189 TGTGCCCAGACCAGTCCC 61.249 66.667 0.00 0.00 0.00 4.46
58 59 2.348998 CTGTGCCCAGACCAGTCC 59.651 66.667 0.00 0.00 41.50 3.85
59 60 2.348998 CCTGTGCCCAGACCAGTC 59.651 66.667 0.00 0.00 41.50 3.51
60 61 3.958860 GCCTGTGCCCAGACCAGT 61.959 66.667 0.00 0.00 41.50 4.00
63 64 4.767255 CTCGCCTGTGCCCAGACC 62.767 72.222 0.00 0.00 41.50 3.85
64 65 4.008933 ACTCGCCTGTGCCCAGAC 62.009 66.667 0.00 0.00 41.50 3.51
65 66 4.007644 CACTCGCCTGTGCCCAGA 62.008 66.667 0.00 0.00 41.50 3.86
68 69 4.767255 CTCCACTCGCCTGTGCCC 62.767 72.222 0.00 0.00 36.68 5.36
69 70 4.767255 CCTCCACTCGCCTGTGCC 62.767 72.222 0.00 0.00 36.68 5.01
71 72 4.767255 GGCCTCCACTCGCCTGTG 62.767 72.222 0.00 0.00 42.21 3.66
77 78 4.803426 GTCAGCGGCCTCCACTCG 62.803 72.222 0.00 0.00 0.00 4.18
78 79 2.456287 AAAGTCAGCGGCCTCCACTC 62.456 60.000 0.00 0.00 0.00 3.51
79 80 2.056906 AAAAGTCAGCGGCCTCCACT 62.057 55.000 0.00 0.00 0.00 4.00
80 81 0.321298 TAAAAGTCAGCGGCCTCCAC 60.321 55.000 0.00 0.00 0.00 4.02
81 82 0.618458 ATAAAAGTCAGCGGCCTCCA 59.382 50.000 0.00 0.00 0.00 3.86
82 83 2.484889 CTATAAAAGTCAGCGGCCTCC 58.515 52.381 0.00 0.00 0.00 4.30
83 84 1.867865 GCTATAAAAGTCAGCGGCCTC 59.132 52.381 0.00 0.00 0.00 4.70
84 85 1.475213 GGCTATAAAAGTCAGCGGCCT 60.475 52.381 0.00 0.00 36.12 5.19
85 86 0.945099 GGCTATAAAAGTCAGCGGCC 59.055 55.000 0.00 0.00 36.12 6.13
86 87 0.582005 CGGCTATAAAAGTCAGCGGC 59.418 55.000 0.00 0.00 36.12 6.53
87 88 1.217882 CCGGCTATAAAAGTCAGCGG 58.782 55.000 0.00 0.00 36.12 5.52
88 89 1.217882 CCCGGCTATAAAAGTCAGCG 58.782 55.000 0.00 0.00 36.12 5.18
89 90 0.945099 GCCCGGCTATAAAAGTCAGC 59.055 55.000 0.71 0.00 34.48 4.26
90 91 1.594331 GGCCCGGCTATAAAAGTCAG 58.406 55.000 9.86 0.00 0.00 3.51
91 92 0.179067 CGGCCCGGCTATAAAAGTCA 60.179 55.000 9.86 0.00 0.00 3.41
92 93 1.504647 GCGGCCCGGCTATAAAAGTC 61.505 60.000 9.86 0.00 0.00 3.01
93 94 1.525306 GCGGCCCGGCTATAAAAGT 60.525 57.895 9.86 0.00 0.00 2.66
94 95 2.604174 CGCGGCCCGGCTATAAAAG 61.604 63.158 9.86 0.00 0.00 2.27
95 96 2.589442 CGCGGCCCGGCTATAAAA 60.589 61.111 9.86 0.00 0.00 1.52
116 117 3.467119 CCTCGCACGCGTACACAC 61.467 66.667 13.44 0.00 40.74 3.82
117 118 4.710695 CCCTCGCACGCGTACACA 62.711 66.667 13.44 0.00 40.74 3.72
118 119 3.902162 TTCCCTCGCACGCGTACAC 62.902 63.158 13.44 3.32 40.74 2.90
119 120 3.620300 CTTCCCTCGCACGCGTACA 62.620 63.158 13.44 0.00 40.74 2.90
120 121 2.879462 CTTCCCTCGCACGCGTAC 60.879 66.667 13.44 5.01 40.74 3.67
121 122 4.124351 CCTTCCCTCGCACGCGTA 62.124 66.667 13.44 0.00 40.74 4.42
124 125 4.821589 CTCCCTTCCCTCGCACGC 62.822 72.222 0.00 0.00 0.00 5.34
125 126 4.148825 CCTCCCTTCCCTCGCACG 62.149 72.222 0.00 0.00 0.00 5.34
126 127 4.475135 GCCTCCCTTCCCTCGCAC 62.475 72.222 0.00 0.00 0.00 5.34
129 130 3.839432 GACGCCTCCCTTCCCTCG 61.839 72.222 0.00 0.00 0.00 4.63
130 131 2.683933 TGACGCCTCCCTTCCCTC 60.684 66.667 0.00 0.00 0.00 4.30
131 132 2.685380 CTGACGCCTCCCTTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
132 133 4.475135 GCTGACGCCTCCCTTCCC 62.475 72.222 0.00 0.00 0.00 3.97
133 134 4.821589 CGCTGACGCCTCCCTTCC 62.822 72.222 0.00 0.00 0.00 3.46
167 168 3.969250 TTGATTCCTCACGGGCGGC 62.969 63.158 0.00 0.00 34.39 6.53
168 169 1.153168 ATTGATTCCTCACGGGCGG 60.153 57.895 0.00 0.00 34.39 6.13
169 170 1.439353 CCATTGATTCCTCACGGGCG 61.439 60.000 0.00 0.00 34.39 6.13
170 171 1.728490 GCCATTGATTCCTCACGGGC 61.728 60.000 0.00 0.00 41.19 6.13
171 172 0.394216 TGCCATTGATTCCTCACGGG 60.394 55.000 0.00 0.00 0.00 5.28
172 173 1.402968 CTTGCCATTGATTCCTCACGG 59.597 52.381 0.00 0.00 0.00 4.94
173 174 1.402968 CCTTGCCATTGATTCCTCACG 59.597 52.381 0.00 0.00 0.00 4.35
174 175 1.135721 GCCTTGCCATTGATTCCTCAC 59.864 52.381 0.00 0.00 0.00 3.51
175 176 1.006281 AGCCTTGCCATTGATTCCTCA 59.994 47.619 0.00 0.00 0.00 3.86
176 177 1.407979 CAGCCTTGCCATTGATTCCTC 59.592 52.381 0.00 0.00 0.00 3.71
177 178 1.006281 TCAGCCTTGCCATTGATTCCT 59.994 47.619 0.00 0.00 0.00 3.36
178 179 1.135721 GTCAGCCTTGCCATTGATTCC 59.864 52.381 0.00 0.00 0.00 3.01
179 180 1.135721 GGTCAGCCTTGCCATTGATTC 59.864 52.381 0.00 0.00 0.00 2.52
180 181 1.188863 GGTCAGCCTTGCCATTGATT 58.811 50.000 0.00 0.00 0.00 2.57
181 182 1.033746 CGGTCAGCCTTGCCATTGAT 61.034 55.000 0.00 0.00 0.00 2.57
182 183 1.675310 CGGTCAGCCTTGCCATTGA 60.675 57.895 0.00 0.00 0.00 2.57
183 184 2.703798 CCGGTCAGCCTTGCCATTG 61.704 63.158 0.00 0.00 0.00 2.82
184 185 2.361610 CCGGTCAGCCTTGCCATT 60.362 61.111 0.00 0.00 0.00 3.16
205 206 0.462789 GGGAATCAATGGCAAGGCTG 59.537 55.000 0.00 0.00 0.00 4.85
206 207 0.688749 GGGGAATCAATGGCAAGGCT 60.689 55.000 0.00 0.00 0.00 4.58
207 208 1.825341 GGGGAATCAATGGCAAGGC 59.175 57.895 0.00 0.00 0.00 4.35
208 209 2.019897 GCGGGGAATCAATGGCAAGG 62.020 60.000 0.00 0.00 0.00 3.61
209 210 1.438814 GCGGGGAATCAATGGCAAG 59.561 57.895 0.00 0.00 0.00 4.01
210 211 2.413963 CGCGGGGAATCAATGGCAA 61.414 57.895 0.00 0.00 0.00 4.52
211 212 2.828095 CGCGGGGAATCAATGGCA 60.828 61.111 0.00 0.00 0.00 4.92
212 213 3.595758 CCGCGGGGAATCAATGGC 61.596 66.667 20.10 0.00 34.06 4.40
228 229 2.440247 CCAATGGCCTCGGTTCCC 60.440 66.667 3.32 0.00 0.00 3.97
229 230 2.440247 CCCAATGGCCTCGGTTCC 60.440 66.667 3.32 0.00 0.00 3.62
230 231 2.440247 CCCCAATGGCCTCGGTTC 60.440 66.667 3.32 0.00 0.00 3.62
231 232 4.060667 CCCCCAATGGCCTCGGTT 62.061 66.667 3.32 0.00 0.00 4.44
233 234 3.721370 CTTCCCCCAATGGCCTCGG 62.721 68.421 3.32 0.79 0.00 4.63
234 235 2.124151 CTTCCCCCAATGGCCTCG 60.124 66.667 3.32 0.00 0.00 4.63
235 236 1.076705 GTCTTCCCCCAATGGCCTC 60.077 63.158 3.32 0.00 0.00 4.70
236 237 2.983879 CGTCTTCCCCCAATGGCCT 61.984 63.158 3.32 0.00 0.00 5.19
237 238 2.440247 CGTCTTCCCCCAATGGCC 60.440 66.667 0.00 0.00 0.00 5.36
238 239 1.452108 CTCGTCTTCCCCCAATGGC 60.452 63.158 0.00 0.00 0.00 4.40
239 240 1.224592 CCTCGTCTTCCCCCAATGG 59.775 63.158 0.00 0.00 0.00 3.16
240 241 1.452108 GCCTCGTCTTCCCCCAATG 60.452 63.158 0.00 0.00 0.00 2.82
241 242 2.998949 GCCTCGTCTTCCCCCAAT 59.001 61.111 0.00 0.00 0.00 3.16
242 243 3.702048 CGCCTCGTCTTCCCCCAA 61.702 66.667 0.00 0.00 0.00 4.12
247 248 4.856607 CTCGGCGCCTCGTCTTCC 62.857 72.222 26.68 0.00 0.00 3.46
248 249 4.117661 ACTCGGCGCCTCGTCTTC 62.118 66.667 26.68 0.00 0.00 2.87
249 250 4.117661 GACTCGGCGCCTCGTCTT 62.118 66.667 27.61 8.31 0.00 3.01
276 277 3.610791 GAAAAAGACGCGGGCCAGC 62.611 63.158 18.93 18.93 0.00 4.85
277 278 2.561373 GAAAAAGACGCGGGCCAG 59.439 61.111 12.47 0.00 0.00 4.85
278 279 3.350612 CGAAAAAGACGCGGGCCA 61.351 61.111 12.47 0.00 0.00 5.36
279 280 4.753877 GCGAAAAAGACGCGGGCC 62.754 66.667 12.47 0.00 46.05 5.80
285 286 0.496851 GTTTTGGCGCGAAAAAGACG 59.503 50.000 28.17 0.00 0.00 4.18
286 287 1.516864 CTGTTTTGGCGCGAAAAAGAC 59.483 47.619 28.17 18.78 0.00 3.01
287 288 1.833860 CTGTTTTGGCGCGAAAAAGA 58.166 45.000 28.17 20.17 0.00 2.52
288 289 0.229500 GCTGTTTTGGCGCGAAAAAG 59.771 50.000 28.17 24.82 0.00 2.27
289 290 0.179124 AGCTGTTTTGGCGCGAAAAA 60.179 45.000 28.17 20.66 34.52 1.94
290 291 0.593773 GAGCTGTTTTGGCGCGAAAA 60.594 50.000 23.88 23.88 34.52 2.29
291 292 1.008995 GAGCTGTTTTGGCGCGAAA 60.009 52.632 13.91 13.91 34.52 3.46
292 293 2.637025 GAGCTGTTTTGGCGCGAA 59.363 55.556 12.10 0.00 34.52 4.70
296 297 4.404654 GGGCGAGCTGTTTTGGCG 62.405 66.667 0.00 0.00 34.52 5.69
297 298 4.056125 GGGGCGAGCTGTTTTGGC 62.056 66.667 0.00 0.00 0.00 4.52
298 299 3.737172 CGGGGCGAGCTGTTTTGG 61.737 66.667 0.00 0.00 0.00 3.28
299 300 3.737172 CCGGGGCGAGCTGTTTTG 61.737 66.667 0.00 0.00 0.00 2.44
357 358 4.741781 CTGAAAACAGCGCCGGCG 62.742 66.667 43.13 43.13 46.35 6.46
364 365 1.005748 GGCTTGGGCTGAAAACAGC 60.006 57.895 12.90 12.90 46.78 4.40
375 376 2.489751 GATTTTCGCCGGCTTGGG 59.510 61.111 26.68 9.07 38.63 4.12
376 377 2.100216 CGATTTTCGCCGGCTTGG 59.900 61.111 26.68 9.50 42.50 3.61
377 378 1.060937 CTCGATTTTCGCCGGCTTG 59.939 57.895 26.68 10.37 40.21 4.01
378 379 2.750888 GCTCGATTTTCGCCGGCTT 61.751 57.895 26.68 3.40 40.21 4.35
379 380 3.195698 GCTCGATTTTCGCCGGCT 61.196 61.111 26.68 4.40 40.21 5.52
380 381 3.156740 GAGCTCGATTTTCGCCGGC 62.157 63.158 19.07 19.07 40.21 6.13
381 382 2.526120 GGAGCTCGATTTTCGCCGG 61.526 63.158 7.83 0.00 40.21 6.13
382 383 1.519455 AGGAGCTCGATTTTCGCCG 60.519 57.895 7.83 0.00 40.21 6.46
383 384 1.432270 CCAGGAGCTCGATTTTCGCC 61.432 60.000 7.83 0.00 40.21 5.54
384 385 1.432270 CCCAGGAGCTCGATTTTCGC 61.432 60.000 7.83 0.00 40.21 4.70
385 386 0.811616 CCCCAGGAGCTCGATTTTCG 60.812 60.000 7.83 0.00 42.10 3.46
386 387 0.464554 CCCCCAGGAGCTCGATTTTC 60.465 60.000 7.83 0.00 33.47 2.29
387 388 1.609783 CCCCCAGGAGCTCGATTTT 59.390 57.895 7.83 0.00 33.47 1.82
388 389 3.049080 GCCCCCAGGAGCTCGATTT 62.049 63.158 7.83 0.00 33.47 2.17
389 390 3.483869 GCCCCCAGGAGCTCGATT 61.484 66.667 7.83 0.00 33.47 3.34
396 397 4.087892 CAGTCACGCCCCCAGGAG 62.088 72.222 0.00 0.00 39.23 3.69
405 406 2.841160 AAAAACGGCCCAGTCACGC 61.841 57.895 0.00 0.00 0.00 5.34
406 407 3.427670 AAAAACGGCCCAGTCACG 58.572 55.556 0.00 0.00 0.00 4.35
445 446 0.762461 CCTAGGAAGGCCTCTCCAGG 60.762 65.000 26.22 24.14 45.54 4.45
446 447 0.762461 CCCTAGGAAGGCCTCTCCAG 60.762 65.000 26.22 21.11 45.54 3.86
447 448 1.314867 CCCTAGGAAGGCCTCTCCA 59.685 63.158 26.22 15.79 45.54 3.86
448 449 1.460497 CCCCTAGGAAGGCCTCTCC 60.460 68.421 20.39 20.39 45.54 3.71
449 450 2.144078 GCCCCTAGGAAGGCCTCTC 61.144 68.421 16.23 6.02 45.54 3.20
450 451 2.040359 GCCCCTAGGAAGGCCTCT 60.040 66.667 16.23 1.44 45.54 3.69
471 472 1.517242 CGATTTAGGGCATCTCCAGC 58.483 55.000 0.00 0.00 36.21 4.85
472 473 1.271054 CCCGATTTAGGGCATCTCCAG 60.271 57.143 0.00 0.00 45.72 3.86
473 474 0.764890 CCCGATTTAGGGCATCTCCA 59.235 55.000 0.00 0.00 45.72 3.86
474 475 3.633361 CCCGATTTAGGGCATCTCC 57.367 57.895 0.00 0.00 45.72 3.71
490 491 0.833949 GAGAGTGTGAAGGGGATCCC 59.166 60.000 23.95 23.95 45.90 3.85
491 492 1.573108 TGAGAGTGTGAAGGGGATCC 58.427 55.000 1.92 1.92 0.00 3.36
492 493 3.964031 ACTATGAGAGTGTGAAGGGGATC 59.036 47.826 0.00 0.00 36.87 3.36
493 494 3.964031 GACTATGAGAGTGTGAAGGGGAT 59.036 47.826 0.00 0.00 39.06 3.85
494 495 3.366396 GACTATGAGAGTGTGAAGGGGA 58.634 50.000 0.00 0.00 39.06 4.81
495 496 2.432510 GGACTATGAGAGTGTGAAGGGG 59.567 54.545 0.00 0.00 39.06 4.79
496 497 2.432510 GGGACTATGAGAGTGTGAAGGG 59.567 54.545 0.00 0.00 39.06 3.95
497 498 3.099905 TGGGACTATGAGAGTGTGAAGG 58.900 50.000 0.00 0.00 39.06 3.46
498 499 4.202202 GGATGGGACTATGAGAGTGTGAAG 60.202 50.000 0.00 0.00 39.06 3.02
499 500 3.706594 GGATGGGACTATGAGAGTGTGAA 59.293 47.826 0.00 0.00 39.06 3.18
500 501 3.300388 GGATGGGACTATGAGAGTGTGA 58.700 50.000 0.00 0.00 39.06 3.58
501 502 2.366916 GGGATGGGACTATGAGAGTGTG 59.633 54.545 0.00 0.00 39.06 3.82
502 503 2.248686 AGGGATGGGACTATGAGAGTGT 59.751 50.000 0.00 0.00 39.06 3.55
503 504 2.896685 GAGGGATGGGACTATGAGAGTG 59.103 54.545 0.00 0.00 39.06 3.51
504 505 2.158234 GGAGGGATGGGACTATGAGAGT 60.158 54.545 0.00 0.00 42.90 3.24
505 506 2.111613 AGGAGGGATGGGACTATGAGAG 59.888 54.545 0.00 0.00 0.00 3.20
506 507 2.110899 GAGGAGGGATGGGACTATGAGA 59.889 54.545 0.00 0.00 0.00 3.27
516 517 3.326297 GGACTAGAAATGAGGAGGGATGG 59.674 52.174 0.00 0.00 0.00 3.51
557 563 1.077930 GGCCCGGGTTTCTAGGTTC 60.078 63.158 24.63 0.00 0.00 3.62
559 565 2.124312 AGGCCCGGGTTTCTAGGT 59.876 61.111 24.63 0.00 0.00 3.08
777 784 2.111251 GGATGGTCTAAGCCGCCC 59.889 66.667 0.00 0.00 0.00 6.13
957 964 2.975536 CACTTAAGGACGCCGGGA 59.024 61.111 2.18 0.00 0.00 5.14
969 997 2.101917 GCGGACTACTATTGGGCACTTA 59.898 50.000 0.00 0.00 0.00 2.24
1055 1083 2.030562 AGAACGCCAAGGTGGTCG 59.969 61.111 11.71 7.23 45.99 4.79
1144 1178 0.390735 AACCATCCGTCTTGGTACGC 60.391 55.000 2.06 0.00 46.75 4.42
1152 1186 2.670148 GGCCCAGAACCATCCGTCT 61.670 63.158 0.00 0.00 0.00 4.18
1180 1214 2.004808 TAGCACACGAGCAGATCCCG 62.005 60.000 0.00 0.00 36.85 5.14
1260 1309 3.618750 GTCGGGGTCGTTGGGTGA 61.619 66.667 0.00 0.00 37.69 4.02
1565 1647 1.785041 TTTGTGCTGAAGGACGCTGC 61.785 55.000 0.00 0.00 39.39 5.25
1581 1663 1.086696 CCACGCAGGGATACACTTTG 58.913 55.000 0.00 0.00 39.74 2.77
1699 1790 1.020437 GCTGTCTTGGCTTGGCTATC 58.980 55.000 0.00 0.00 0.00 2.08
1700 1791 0.329261 TGCTGTCTTGGCTTGGCTAT 59.671 50.000 0.00 0.00 0.00 2.97
1702 1793 1.602888 CTGCTGTCTTGGCTTGGCT 60.603 57.895 0.00 0.00 0.00 4.75
1704 1795 0.825010 AACCTGCTGTCTTGGCTTGG 60.825 55.000 0.00 0.00 0.00 3.61
1705 1796 0.595095 GAACCTGCTGTCTTGGCTTG 59.405 55.000 0.00 0.00 0.00 4.01
1706 1797 0.183492 TGAACCTGCTGTCTTGGCTT 59.817 50.000 0.00 0.00 0.00 4.35
1707 1798 0.403271 ATGAACCTGCTGTCTTGGCT 59.597 50.000 0.00 0.00 0.00 4.75
1708 1799 0.524862 CATGAACCTGCTGTCTTGGC 59.475 55.000 0.00 0.00 0.00 4.52
1709 1800 0.524862 GCATGAACCTGCTGTCTTGG 59.475 55.000 0.00 0.00 39.12 3.61
1710 1801 1.241165 TGCATGAACCTGCTGTCTTG 58.759 50.000 0.00 0.00 42.75 3.02
1711 1802 2.211250 ATGCATGAACCTGCTGTCTT 57.789 45.000 0.00 0.00 42.75 3.01
1712 1803 2.211250 AATGCATGAACCTGCTGTCT 57.789 45.000 0.00 0.00 42.75 3.41
1713 1804 2.991190 CAAAATGCATGAACCTGCTGTC 59.009 45.455 0.00 0.00 42.75 3.51
1714 1805 2.629137 TCAAAATGCATGAACCTGCTGT 59.371 40.909 0.00 0.00 42.75 4.40
1715 1806 3.057104 TCTCAAAATGCATGAACCTGCTG 60.057 43.478 0.00 0.00 42.75 4.41
1716 1807 3.057033 GTCTCAAAATGCATGAACCTGCT 60.057 43.478 0.00 0.00 42.75 4.24
1717 1808 3.248266 GTCTCAAAATGCATGAACCTGC 58.752 45.455 0.00 0.00 42.62 4.85
1718 1809 4.508461 TGTCTCAAAATGCATGAACCTG 57.492 40.909 0.00 0.00 0.00 4.00
1719 1810 4.768448 TGATGTCTCAAAATGCATGAACCT 59.232 37.500 0.00 0.00 0.00 3.50
1720 1811 5.063180 TGATGTCTCAAAATGCATGAACC 57.937 39.130 0.00 0.00 0.00 3.62
1721 1812 6.327154 TGATGATGTCTCAAAATGCATGAAC 58.673 36.000 0.00 0.00 34.37 3.18
1722 1813 6.518208 TGATGATGTCTCAAAATGCATGAA 57.482 33.333 0.00 0.00 34.37 2.57
1723 1814 6.376018 TCTTGATGATGTCTCAAAATGCATGA 59.624 34.615 0.00 0.00 34.37 3.07
1724 1815 6.560711 TCTTGATGATGTCTCAAAATGCATG 58.439 36.000 0.00 0.00 34.37 4.06
1725 1816 6.769134 TCTTGATGATGTCTCAAAATGCAT 57.231 33.333 0.00 0.00 34.37 3.96
1726 1817 6.769134 ATCTTGATGATGTCTCAAAATGCA 57.231 33.333 0.00 0.00 34.37 3.96
1727 1818 9.745880 ATAAATCTTGATGATGTCTCAAAATGC 57.254 29.630 0.00 0.00 35.21 3.56
1731 1822 9.992910 CGAAATAAATCTTGATGATGTCTCAAA 57.007 29.630 0.00 0.00 35.21 2.69
1732 1823 9.382275 TCGAAATAAATCTTGATGATGTCTCAA 57.618 29.630 0.00 0.00 35.21 3.02
1733 1824 8.947055 TCGAAATAAATCTTGATGATGTCTCA 57.053 30.769 0.00 0.00 35.21 3.27
1735 1826 9.551734 TGATCGAAATAAATCTTGATGATGTCT 57.448 29.630 0.00 0.00 35.21 3.41
1736 1827 9.808808 CTGATCGAAATAAATCTTGATGATGTC 57.191 33.333 0.00 0.00 35.21 3.06
1737 1828 8.288208 GCTGATCGAAATAAATCTTGATGATGT 58.712 33.333 0.00 0.00 35.21 3.06
1738 1829 8.287503 TGCTGATCGAAATAAATCTTGATGATG 58.712 33.333 0.00 0.00 35.21 3.07
1739 1830 8.387190 TGCTGATCGAAATAAATCTTGATGAT 57.613 30.769 0.00 0.00 36.89 2.45
1740 1831 7.041576 CCTGCTGATCGAAATAAATCTTGATGA 60.042 37.037 0.00 0.00 0.00 2.92
1741 1832 7.076362 CCTGCTGATCGAAATAAATCTTGATG 58.924 38.462 0.00 0.00 0.00 3.07
1742 1833 6.769822 ACCTGCTGATCGAAATAAATCTTGAT 59.230 34.615 0.00 0.00 0.00 2.57
1743 1834 6.115446 ACCTGCTGATCGAAATAAATCTTGA 58.885 36.000 0.00 0.00 0.00 3.02
1744 1835 6.369059 ACCTGCTGATCGAAATAAATCTTG 57.631 37.500 0.00 0.00 0.00 3.02
1745 1836 6.599244 TGAACCTGCTGATCGAAATAAATCTT 59.401 34.615 0.00 0.00 0.00 2.40
1746 1837 6.115446 TGAACCTGCTGATCGAAATAAATCT 58.885 36.000 0.00 0.00 0.00 2.40
1747 1838 6.037610 ACTGAACCTGCTGATCGAAATAAATC 59.962 38.462 0.00 0.00 0.00 2.17
1748 1839 5.882557 ACTGAACCTGCTGATCGAAATAAAT 59.117 36.000 0.00 0.00 0.00 1.40
1749 1840 5.245531 ACTGAACCTGCTGATCGAAATAAA 58.754 37.500 0.00 0.00 0.00 1.40
1750 1841 4.832248 ACTGAACCTGCTGATCGAAATAA 58.168 39.130 0.00 0.00 0.00 1.40
1751 1842 4.160439 AGACTGAACCTGCTGATCGAAATA 59.840 41.667 0.00 0.00 0.00 1.40
1752 1843 3.055530 AGACTGAACCTGCTGATCGAAAT 60.056 43.478 0.00 0.00 0.00 2.17
1753 1844 2.300152 AGACTGAACCTGCTGATCGAAA 59.700 45.455 0.00 0.00 0.00 3.46
1754 1845 1.895798 AGACTGAACCTGCTGATCGAA 59.104 47.619 0.00 0.00 0.00 3.71
1755 1846 1.203287 CAGACTGAACCTGCTGATCGA 59.797 52.381 0.00 0.00 0.00 3.59
1756 1847 1.203287 TCAGACTGAACCTGCTGATCG 59.797 52.381 1.64 0.00 32.85 3.69
1757 1848 2.495270 TCTCAGACTGAACCTGCTGATC 59.505 50.000 6.61 0.00 36.85 2.92
1758 1849 2.233431 GTCTCAGACTGAACCTGCTGAT 59.767 50.000 6.61 0.00 36.85 2.90
1759 1850 1.615883 GTCTCAGACTGAACCTGCTGA 59.384 52.381 6.61 0.00 36.13 4.26
1788 1884 6.224584 GGAACTACTAGCAATGGGAATCTAC 58.775 44.000 0.00 0.00 0.00 2.59
1795 1891 3.322254 AGATCGGAACTACTAGCAATGGG 59.678 47.826 0.00 0.00 0.00 4.00
1800 1896 3.189618 TCGAGATCGGAACTACTAGCA 57.810 47.619 1.91 0.00 40.29 3.49
1817 1913 6.724893 TTATACTGATGGGAAACTGATCGA 57.275 37.500 0.00 0.00 0.00 3.59
1818 1914 7.969536 AATTATACTGATGGGAAACTGATCG 57.030 36.000 0.00 0.00 0.00 3.69
1828 1924 4.759782 CCGGCTCTAATTATACTGATGGG 58.240 47.826 0.00 0.00 0.00 4.00
1858 1954 8.113062 GCAGCGATAAGAGCAACATTATATTAG 58.887 37.037 0.00 0.00 37.01 1.73
1861 1957 5.352569 GGCAGCGATAAGAGCAACATTATAT 59.647 40.000 0.00 0.00 37.01 0.86
1874 1970 1.135046 CAGACGATGGCAGCGATAAG 58.865 55.000 33.22 14.09 0.00 1.73
1885 1981 2.731451 ACAACAATGACGACAGACGATG 59.269 45.455 0.00 0.00 45.77 3.84
1892 1988 3.078097 CCCCATTACAACAATGACGACA 58.922 45.455 0.00 0.00 0.00 4.35
1903 1999 5.426833 CCAATTTCCCATAACCCCATTACAA 59.573 40.000 0.00 0.00 0.00 2.41
1942 2038 5.789643 ATCAAGTACAAACAGCCAATTGT 57.210 34.783 4.43 4.35 42.16 2.71
2007 2103 4.630894 ACGACAACAATGACACAACAAT 57.369 36.364 0.00 0.00 0.00 2.71
2037 2133 9.082313 CCAATTTCATTCCATAACTAGGCTTAT 57.918 33.333 0.00 0.00 0.00 1.73
2038 2134 8.278639 TCCAATTTCATTCCATAACTAGGCTTA 58.721 33.333 0.00 0.00 0.00 3.09
2039 2135 7.125391 TCCAATTTCATTCCATAACTAGGCTT 58.875 34.615 0.00 0.00 0.00 4.35
2040 2136 6.672593 TCCAATTTCATTCCATAACTAGGCT 58.327 36.000 0.00 0.00 0.00 4.58
2041 2137 6.959639 TCCAATTTCATTCCATAACTAGGC 57.040 37.500 0.00 0.00 0.00 3.93
2042 2138 8.525290 ACTTCCAATTTCATTCCATAACTAGG 57.475 34.615 0.00 0.00 0.00 3.02
2044 2140 8.966868 GGAACTTCCAATTTCATTCCATAACTA 58.033 33.333 2.62 0.00 36.28 2.24
2045 2141 7.454380 TGGAACTTCCAATTTCATTCCATAACT 59.546 33.333 8.15 0.00 45.00 2.24
2046 2142 7.610865 TGGAACTTCCAATTTCATTCCATAAC 58.389 34.615 8.15 0.00 45.00 1.89
2047 2143 7.789202 TGGAACTTCCAATTTCATTCCATAA 57.211 32.000 8.15 0.00 45.00 1.90
2078 5573 7.710044 TCGTCAGGTTAAGTACATACAACAAAA 59.290 33.333 0.00 0.00 0.00 2.44
2250 6198 9.167239 GTGAGTACGTATAATGTCAAGATGTAC 57.833 37.037 0.00 0.00 34.25 2.90
2258 6206 7.595604 TGACTTTGTGAGTACGTATAATGTCA 58.404 34.615 17.46 17.46 39.19 3.58
2259 6207 8.630278 ATGACTTTGTGAGTACGTATAATGTC 57.370 34.615 0.00 14.54 39.19 3.06
2262 6210 8.804743 CGAAATGACTTTGTGAGTACGTATAAT 58.195 33.333 0.00 0.00 39.19 1.28
2263 6211 7.201376 GCGAAATGACTTTGTGAGTACGTATAA 60.201 37.037 0.00 0.00 39.19 0.98
2282 6230 2.025544 TGACGGTTTTTCGCGAAATG 57.974 45.000 32.58 23.44 0.00 2.32
2283 6231 2.759538 TTGACGGTTTTTCGCGAAAT 57.240 40.000 32.58 18.91 0.00 2.17
2297 6245 4.267214 TCACATGCAACACAAAAATTGACG 59.733 37.500 0.00 0.00 0.00 4.35
2310 6258 9.424659 CTAAATTTTGTCTTTTTCACATGCAAC 57.575 29.630 0.00 0.00 0.00 4.17
2312 6260 8.715191 ACTAAATTTTGTCTTTTTCACATGCA 57.285 26.923 0.00 0.00 0.00 3.96
2334 6282 7.402071 TCTCCTGAAGAGCCCTTTTTAATACTA 59.598 37.037 0.00 0.00 42.90 1.82
2361 6309 9.226345 GACTTGTGTAAAGAAGACAAAGAAATG 57.774 33.333 0.00 0.00 40.52 2.32
2386 6334 2.035321 GGAAAACCGGCATTTTCTGTGA 59.965 45.455 22.46 0.00 44.54 3.58
2389 6337 2.223923 TGTGGAAAACCGGCATTTTCTG 60.224 45.455 22.46 0.00 44.54 3.02
2414 6362 1.217001 TTCTATATGCGCACGCCAAG 58.783 50.000 14.90 6.48 41.09 3.61
2479 6428 5.693104 CCTGTCATTGGAAAAACATGTCAAG 59.307 40.000 0.00 0.00 0.00 3.02
2505 6454 0.824595 TGGCACATGGGAGCATATGC 60.825 55.000 20.36 20.36 42.49 3.14
2537 6486 7.644157 CAGCGAGTATGTGCGTGTATATATATT 59.356 37.037 0.00 0.00 35.87 1.28
2545 6494 0.524414 ACAGCGAGTATGTGCGTGTA 59.476 50.000 0.00 0.00 35.87 2.90
2546 6495 0.319555 AACAGCGAGTATGTGCGTGT 60.320 50.000 0.00 0.00 35.87 4.49
2551 6500 5.319139 CAGAAATCAAACAGCGAGTATGTG 58.681 41.667 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.