Multiple sequence alignment - TraesCS5B01G012000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G012000 chr5B 100.000 5054 0 0 1 5054 11775488 11770435 0.000000e+00 9334.0
1 TraesCS5B01G012000 chr5B 92.500 120 9 0 4484 4603 413048759 413048878 6.730000e-39 172.0
2 TraesCS5B01G012000 chr5B 91.667 84 3 3 4350 4431 241258032 241258113 4.140000e-21 113.0
3 TraesCS5B01G012000 chr5D 93.593 4261 231 22 1 4240 11953689 11949450 0.000000e+00 6318.0
4 TraesCS5B01G012000 chr5D 84.677 248 18 8 4764 4994 11949076 11948832 3.940000e-56 230.0
5 TraesCS5B01G012000 chr5D 85.500 200 16 3 4603 4794 11949279 11949085 3.990000e-46 196.0
6 TraesCS5B01G012000 chr5D 89.706 68 7 0 4980 5047 11948816 11948749 2.510000e-13 87.9
7 TraesCS5B01G012000 chr1A 92.387 3704 206 29 584 4244 99871528 99867858 0.000000e+00 5208.0
8 TraesCS5B01G012000 chr1A 84.163 221 19 8 4834 5047 99867423 99867212 3.090000e-47 200.0
9 TraesCS5B01G012000 chr1A 84.800 125 16 3 4603 4727 99867629 99867508 6.870000e-24 122.0
10 TraesCS5B01G012000 chr1B 77.208 1404 273 28 1056 2433 614269376 614270758 0.000000e+00 776.0
11 TraesCS5B01G012000 chr1B 91.549 71 6 0 3677 3747 687276772 687276702 1.160000e-16 99.0
12 TraesCS5B01G012000 chr3D 92.000 125 10 0 4477 4601 489175798 489175922 5.200000e-40 176.0
13 TraesCS5B01G012000 chr3D 92.500 120 9 0 4481 4600 498226124 498226243 6.730000e-39 172.0
14 TraesCS5B01G012000 chr6B 92.623 122 8 1 4479 4600 343032971 343032851 1.870000e-39 174.0
15 TraesCS5B01G012000 chr6B 95.890 73 3 0 4359 4431 576014229 576014301 8.890000e-23 119.0
16 TraesCS5B01G012000 chr1D 93.220 118 8 0 4483 4600 284915829 284915946 1.870000e-39 174.0
17 TraesCS5B01G012000 chr1D 85.263 95 12 2 3677 3770 494010413 494010320 4.160000e-16 97.1
18 TraesCS5B01G012000 chr6D 93.162 117 8 0 4484 4600 36114516 36114632 6.730000e-39 172.0
19 TraesCS5B01G012000 chr6D 87.826 115 14 0 455 569 8265483 8265369 8.830000e-28 135.0
20 TraesCS5B01G012000 chr4A 91.935 124 9 1 4484 4607 590608151 590608029 6.730000e-39 172.0
21 TraesCS5B01G012000 chr4A 94.737 76 4 0 4356 4431 91314239 91314314 8.890000e-23 119.0
22 TraesCS5B01G012000 chr4A 90.141 71 7 0 3677 3747 54107181 54107111 5.390000e-15 93.5
23 TraesCS5B01G012000 chr4A 95.556 45 2 0 3703 3747 532796873 532796917 7.020000e-09 73.1
24 TraesCS5B01G012000 chr2B 91.870 123 10 0 4478 4600 794701327 794701449 6.730000e-39 172.0
25 TraesCS5B01G012000 chr2B 91.200 125 11 0 4479 4603 484592292 484592168 2.420000e-38 171.0
26 TraesCS5B01G012000 chr2B 95.890 73 3 0 4359 4431 457603294 457603366 8.890000e-23 119.0
27 TraesCS5B01G012000 chr2B 86.747 83 5 4 3674 3753 105540226 105540305 2.510000e-13 87.9
28 TraesCS5B01G012000 chr6A 84.024 169 15 5 2847 3015 44853907 44853751 8.760000e-33 152.0
29 TraesCS5B01G012000 chr6A 82.840 169 17 5 2847 3015 44858916 44858760 1.900000e-29 141.0
30 TraesCS5B01G012000 chrUn 80.925 173 20 3 2843 3015 113066353 113066512 1.910000e-24 124.0
31 TraesCS5B01G012000 chr7D 94.872 78 4 0 4354 4431 26825841 26825764 6.870000e-24 122.0
32 TraesCS5B01G012000 chr7A 96.000 75 3 0 4357 4431 80991371 80991297 6.870000e-24 122.0
33 TraesCS5B01G012000 chr2D 92.500 80 5 1 4352 4431 411735601 411735523 4.140000e-21 113.0
34 TraesCS5B01G012000 chr2D 79.861 144 15 9 3677 3809 65690227 65690087 5.390000e-15 93.5
35 TraesCS5B01G012000 chr3B 90.588 85 5 3 4349 4431 42062149 42062066 5.350000e-20 110.0
36 TraesCS5B01G012000 chr3B 90.588 85 5 3 4349 4431 42088543 42088460 5.350000e-20 110.0
37 TraesCS5B01G012000 chr4D 86.905 84 11 0 3677 3760 397094309 397094226 1.500000e-15 95.3
38 TraesCS5B01G012000 chr2A 86.747 83 5 4 3674 3753 68880945 68881024 2.510000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G012000 chr5B 11770435 11775488 5053 True 9334.000000 9334 100.000000 1 5054 1 chr5B.!!$R1 5053
1 TraesCS5B01G012000 chr5D 11948749 11953689 4940 True 1707.975000 6318 88.369000 1 5047 4 chr5D.!!$R1 5046
2 TraesCS5B01G012000 chr1A 99867212 99871528 4316 True 1843.333333 5208 87.116667 584 5047 3 chr1A.!!$R1 4463
3 TraesCS5B01G012000 chr1B 614269376 614270758 1382 False 776.000000 776 77.208000 1056 2433 1 chr1B.!!$F1 1377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 524 0.177141 CGTCCGATTTTGGAGGCCTA 59.823 55.000 4.42 0.0 39.14 3.93 F
1612 1647 0.035458 CAGACTCACCAACCTCACCC 59.965 60.000 0.00 0.0 0.00 4.61 F
1613 1648 1.004918 GACTCACCAACCTCACCCG 60.005 63.158 0.00 0.0 0.00 5.28 F
2700 2746 1.205893 CTGAGCTACCTGAACCTGTCC 59.794 57.143 0.00 0.0 0.00 4.02 F
3376 3425 1.677966 AACGGCAGCCTCTACGAGA 60.678 57.895 10.54 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2465 2511 0.247736 AATGTCCAGGCTGTCGAGAC 59.752 55.000 14.43 13.5 0.00 3.36 R
3570 3619 1.144936 GTGGAGGATCTTGGCGAGG 59.855 63.158 0.97 0.0 33.73 4.63 R
3702 3751 0.165295 TGTACACGTCGCTCTTCTCG 59.835 55.000 0.00 0.0 0.00 4.04 R
4046 4095 0.034477 AACATTGAACGGCTAGGGGG 60.034 55.000 0.00 0.0 0.00 5.40 R
4285 4346 0.389817 TGGAGAGGAATCAACGCACG 60.390 55.000 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.042062 TCCCTGTTGAGAATGTGAAGTCAT 59.958 41.667 0.00 0.00 0.00 3.06
24 25 5.248248 TCCCTGTTGAGAATGTGAAGTCATA 59.752 40.000 0.00 0.00 0.00 2.15
33 34 3.526931 TGTGAAGTCATAGTGCTAGCC 57.473 47.619 13.29 3.49 0.00 3.93
35 36 1.202417 TGAAGTCATAGTGCTAGCCGC 60.202 52.381 13.29 5.21 39.77 6.53
71 72 3.775654 CCCCCTGCACTCTCGTCC 61.776 72.222 0.00 0.00 0.00 4.79
74 75 1.979155 CCCTGCACTCTCGTCCTGA 60.979 63.158 0.00 0.00 0.00 3.86
83 84 2.894126 ACTCTCGTCCTGAATCACAGTT 59.106 45.455 0.00 0.00 44.40 3.16
120 121 3.834489 CTCCCTAAGAGCACACATGAT 57.166 47.619 0.00 0.00 35.31 2.45
121 122 4.944619 CTCCCTAAGAGCACACATGATA 57.055 45.455 0.00 0.00 35.31 2.15
126 127 5.395657 CCCTAAGAGCACACATGATAACTGA 60.396 44.000 0.00 0.00 0.00 3.41
149 150 1.071542 TGGCAATCAGGAGAACGACAA 59.928 47.619 0.00 0.00 0.00 3.18
194 195 2.819348 GCAAACTTCCTGAGGACCCAAT 60.819 50.000 0.00 0.00 0.00 3.16
196 197 0.905357 ACTTCCTGAGGACCCAATCG 59.095 55.000 0.00 0.00 0.00 3.34
210 211 0.588252 CAATCGATCGCCCCACAATC 59.412 55.000 11.09 0.00 0.00 2.67
245 246 2.613026 TTCGACACTCAGAGGCAAAA 57.387 45.000 1.53 0.00 0.00 2.44
246 247 2.839486 TCGACACTCAGAGGCAAAAT 57.161 45.000 1.53 0.00 0.00 1.82
247 248 2.688507 TCGACACTCAGAGGCAAAATC 58.311 47.619 1.53 0.00 0.00 2.17
248 249 2.037121 TCGACACTCAGAGGCAAAATCA 59.963 45.455 1.53 0.00 0.00 2.57
250 251 3.438087 CGACACTCAGAGGCAAAATCATT 59.562 43.478 1.53 0.00 0.00 2.57
251 252 4.631377 CGACACTCAGAGGCAAAATCATTA 59.369 41.667 1.53 0.00 0.00 1.90
285 286 7.589574 TTTCAAAAAGGCAAGTCACTAAAAC 57.410 32.000 0.00 0.00 0.00 2.43
481 482 3.243359 TCCCTTCCACAAAAATGAGCT 57.757 42.857 0.00 0.00 0.00 4.09
489 490 3.553508 CCACAAAAATGAGCTTGGGTCAG 60.554 47.826 5.69 0.00 43.30 3.51
523 524 0.177141 CGTCCGATTTTGGAGGCCTA 59.823 55.000 4.42 0.00 39.14 3.93
524 525 1.406341 CGTCCGATTTTGGAGGCCTAA 60.406 52.381 4.42 0.00 39.14 2.69
539 540 1.270252 GCCTAAGGCTGAGATCTCTGC 60.270 57.143 34.46 34.46 46.69 4.26
574 575 2.492025 ACCTGATAGGCCTCATTCCAA 58.508 47.619 9.68 0.00 39.63 3.53
577 578 3.117738 CCTGATAGGCCTCATTCCAAACT 60.118 47.826 9.68 0.00 0.00 2.66
580 581 0.613012 AGGCCTCATTCCAAACTGGC 60.613 55.000 0.00 0.00 37.47 4.85
634 635 6.342906 GTTTGTAGGCCAAGGTTAAAACTTT 58.657 36.000 5.01 0.00 33.75 2.66
853 855 9.160496 AGTGTATCTTTCATGAATCAAAGAGTC 57.840 33.333 9.40 6.96 40.96 3.36
890 893 7.973944 CACTATTGTTAGCACACTATCACAGTA 59.026 37.037 0.00 0.00 34.98 2.74
891 894 7.974501 ACTATTGTTAGCACACTATCACAGTAC 59.025 37.037 0.00 0.00 34.98 2.73
892 895 4.729595 TGTTAGCACACTATCACAGTACG 58.270 43.478 0.00 0.00 34.98 3.67
894 897 2.168496 AGCACACTATCACAGTACGGT 58.832 47.619 0.00 0.00 34.98 4.83
895 898 2.163815 AGCACACTATCACAGTACGGTC 59.836 50.000 0.00 0.00 34.98 4.79
896 899 2.094906 GCACACTATCACAGTACGGTCA 60.095 50.000 0.00 0.00 34.98 4.02
897 900 3.499048 CACACTATCACAGTACGGTCAC 58.501 50.000 0.00 0.00 34.98 3.67
898 901 3.057806 CACACTATCACAGTACGGTCACA 60.058 47.826 0.00 0.00 34.98 3.58
899 902 3.570975 ACACTATCACAGTACGGTCACAA 59.429 43.478 0.00 0.00 34.98 3.33
959 967 1.374758 GGTCAGCCGTGAGTCCAAG 60.375 63.158 0.00 0.00 31.53 3.61
990 998 3.254411 CACAAAGAAGCTTCCTTTCCTCC 59.746 47.826 22.81 0.00 32.04 4.30
1250 1285 0.109226 GTCACTGCACTCTCCGTACC 60.109 60.000 0.00 0.00 0.00 3.34
1255 1290 1.748122 GCACTCTCCGTACCCGAGA 60.748 63.158 7.03 7.03 35.63 4.04
1263 1298 0.171903 CCGTACCCGAGATGAACGTT 59.828 55.000 0.00 0.00 35.63 3.99
1264 1299 1.401552 CCGTACCCGAGATGAACGTTA 59.598 52.381 0.00 0.00 35.63 3.18
1317 1352 2.126110 TCGCTGAAATCGCTCGCA 60.126 55.556 0.00 0.00 0.00 5.10
1410 1445 1.078848 CAGCCTCCCCTTCAACTCG 60.079 63.158 0.00 0.00 0.00 4.18
1471 1506 2.659610 GCACGCTCAACCTCTCCT 59.340 61.111 0.00 0.00 0.00 3.69
1551 1586 3.470888 CTCTCCGCCGGGGACAAT 61.471 66.667 21.95 0.00 40.94 2.71
1575 1610 2.738521 CTCACGCCCACCAAGTCG 60.739 66.667 0.00 0.00 0.00 4.18
1596 1631 3.147595 CCGCCCGAGATCACCAGA 61.148 66.667 0.00 0.00 0.00 3.86
1612 1647 0.035458 CAGACTCACCAACCTCACCC 59.965 60.000 0.00 0.00 0.00 4.61
1613 1648 1.004918 GACTCACCAACCTCACCCG 60.005 63.158 0.00 0.00 0.00 5.28
1735 1770 1.606889 GAGATACCCCCGGCGATCT 60.607 63.158 9.30 8.28 33.22 2.75
1820 1855 2.266055 GTTCGGGAGGCTCACCAG 59.734 66.667 17.69 11.05 39.06 4.00
1860 1895 2.743718 CAGAACCAGCTCACCGGT 59.256 61.111 0.00 0.00 36.98 5.28
1869 1904 2.681778 CTCACCGGTGGCCTCTCT 60.682 66.667 33.40 0.00 0.00 3.10
1878 1913 4.219999 GGCCTCTCTGAGCTCCGC 62.220 72.222 12.15 3.02 0.00 5.54
1974 2009 1.216710 CAGGGAGCTCGTCAACCTC 59.783 63.158 7.83 0.00 0.00 3.85
2207 2253 2.576615 GTTCAGGGTCAGCAAGAACTT 58.423 47.619 4.04 0.00 36.54 2.66
2220 2266 1.741770 GAACTTGCTCACCGGCGAT 60.742 57.895 9.30 0.00 34.52 4.58
2376 2422 2.733593 GGCGCGATACCGTCATCC 60.734 66.667 12.10 0.00 38.24 3.51
2464 2510 3.869272 GCATCGGCAAGCTGGTCG 61.869 66.667 9.38 9.38 40.72 4.79
2465 2511 3.197790 CATCGGCAAGCTGGTCGG 61.198 66.667 16.50 0.00 36.35 4.79
2487 2533 2.401766 CGACAGCCTGGACATTGCC 61.402 63.158 0.00 0.00 0.00 4.52
2604 2650 4.385405 ACTGAGCTGCGTGGCCTC 62.385 66.667 3.32 0.00 0.00 4.70
2700 2746 1.205893 CTGAGCTACCTGAACCTGTCC 59.794 57.143 0.00 0.00 0.00 4.02
3108 3157 2.162754 CGGGAATGTGTACCGCGTC 61.163 63.158 4.92 0.00 41.23 5.19
3376 3425 1.677966 AACGGCAGCCTCTACGAGA 60.678 57.895 10.54 0.00 0.00 4.04
3378 3427 2.415426 GGCAGCCTCTACGAGAGC 59.585 66.667 3.29 0.00 40.98 4.09
3405 3454 4.785453 CCCACGGCCAGGAAGCTC 62.785 72.222 12.71 0.00 0.00 4.09
3586 3635 2.110006 GCCTCGCCAAGATCCTCC 59.890 66.667 0.00 0.00 0.00 4.30
3987 4036 2.202987 CAGATGCTGGAGGACGCC 60.203 66.667 0.00 0.00 0.00 5.68
4046 4095 2.126031 GGAGGTCAAGGTCGTCGC 60.126 66.667 0.00 0.00 0.00 5.19
4048 4097 3.644399 GAGGTCAAGGTCGTCGCCC 62.644 68.421 2.61 0.00 0.00 6.13
4062 4111 2.595655 GCCCCCTAGCCGTTCAAT 59.404 61.111 0.00 0.00 0.00 2.57
4066 4115 1.379527 CCCCTAGCCGTTCAATGTTC 58.620 55.000 0.00 0.00 0.00 3.18
4067 4116 1.339631 CCCCTAGCCGTTCAATGTTCA 60.340 52.381 0.00 0.00 0.00 3.18
4068 4117 2.009774 CCCTAGCCGTTCAATGTTCAG 58.990 52.381 0.00 0.00 0.00 3.02
4069 4118 1.398390 CCTAGCCGTTCAATGTTCAGC 59.602 52.381 0.00 0.00 0.00 4.26
4070 4119 2.076100 CTAGCCGTTCAATGTTCAGCA 58.924 47.619 0.00 0.00 0.00 4.41
4071 4120 0.877071 AGCCGTTCAATGTTCAGCAG 59.123 50.000 0.00 0.00 0.00 4.24
4088 4146 1.202382 GCAGCTGAGCATTTTGGATCC 60.202 52.381 20.43 4.20 0.00 3.36
4089 4147 2.097036 CAGCTGAGCATTTTGGATCCA 58.903 47.619 11.44 11.44 0.00 3.41
4092 4150 2.358957 CTGAGCATTTTGGATCCACGA 58.641 47.619 15.91 6.29 0.00 4.35
4116 4174 4.508128 TCCGATCGGAGCAACGGC 62.508 66.667 32.59 0.00 44.19 5.68
4135 4193 3.838271 GGCCGTGATCTGAGCCGA 61.838 66.667 4.98 0.00 35.30 5.54
4141 4199 2.652496 GATCTGAGCCGACGCGTC 60.652 66.667 28.96 28.96 41.18 5.19
4160 4218 1.002366 CCAAGCGTGTGTAGAGCATC 58.998 55.000 0.00 0.00 0.00 3.91
4185 4243 8.027189 TCTAGCATGTGTTGTGTTAGTAGTAAG 58.973 37.037 0.00 0.00 33.66 2.34
4186 4244 6.755206 AGCATGTGTTGTGTTAGTAGTAAGA 58.245 36.000 0.00 0.00 0.00 2.10
4188 4246 7.385205 AGCATGTGTTGTGTTAGTAGTAAGAAG 59.615 37.037 0.00 0.00 0.00 2.85
4189 4247 7.360101 GCATGTGTTGTGTTAGTAGTAAGAAGG 60.360 40.741 0.00 0.00 0.00 3.46
4230 4288 6.553100 TGAAGAATTACCCAACCAATCTTGTT 59.447 34.615 0.00 0.00 0.00 2.83
4236 4294 3.118811 ACCCAACCAATCTTGTTTGTGTG 60.119 43.478 0.51 0.00 29.74 3.82
4237 4295 3.118811 CCCAACCAATCTTGTTTGTGTGT 60.119 43.478 0.51 0.00 29.74 3.72
4252 4313 9.570488 TTGTTTGTGTGTACCAAAGTTAATTAC 57.430 29.630 0.00 0.00 32.79 1.89
4277 4338 7.892241 ACTAGTACTGTAGGAAATTACCAGTGA 59.108 37.037 5.39 0.00 0.00 3.41
4284 4345 6.823182 TGTAGGAAATTACCAGTGACATCATG 59.177 38.462 0.00 0.00 0.00 3.07
4285 4346 4.641989 AGGAAATTACCAGTGACATCATGC 59.358 41.667 0.00 0.00 0.00 4.06
4287 4348 2.760634 TTACCAGTGACATCATGCGT 57.239 45.000 0.00 0.00 0.00 5.24
4288 4349 2.008752 TACCAGTGACATCATGCGTG 57.991 50.000 0.00 0.00 0.00 5.34
4289 4350 1.300971 ACCAGTGACATCATGCGTGC 61.301 55.000 0.00 0.00 0.00 5.34
4290 4351 1.059838 CAGTGACATCATGCGTGCG 59.940 57.895 0.00 0.00 0.00 5.34
4291 4352 1.374631 AGTGACATCATGCGTGCGT 60.375 52.632 0.00 0.29 0.00 5.24
4292 4353 0.950555 AGTGACATCATGCGTGCGTT 60.951 50.000 0.00 0.00 0.00 4.84
4293 4354 0.790495 GTGACATCATGCGTGCGTTG 60.790 55.000 0.00 1.57 0.00 4.10
4294 4355 0.948141 TGACATCATGCGTGCGTTGA 60.948 50.000 0.00 0.64 0.00 3.18
4295 4356 0.374758 GACATCATGCGTGCGTTGAT 59.625 50.000 0.00 4.76 0.00 2.57
4296 4357 0.804364 ACATCATGCGTGCGTTGATT 59.196 45.000 0.00 0.00 0.00 2.57
4297 4358 1.202065 ACATCATGCGTGCGTTGATTC 60.202 47.619 0.00 0.00 0.00 2.52
4301 4376 0.391661 ATGCGTGCGTTGATTCCTCT 60.392 50.000 0.00 0.00 0.00 3.69
4309 4384 2.869192 GCGTTGATTCCTCTCCATTCTC 59.131 50.000 0.00 0.00 0.00 2.87
4314 4389 3.118112 TGATTCCTCTCCATTCTCCTTGC 60.118 47.826 0.00 0.00 0.00 4.01
4342 4424 5.263599 TCAATCATTGGCAGGTCAAACTAT 58.736 37.500 0.00 0.00 0.00 2.12
4343 4425 5.125900 TCAATCATTGGCAGGTCAAACTATG 59.874 40.000 0.00 0.00 0.00 2.23
4387 4469 5.579564 ACCTTCGTCTAGGTGAATAAGTC 57.420 43.478 5.96 0.00 46.71 3.01
4388 4470 5.014858 ACCTTCGTCTAGGTGAATAAGTCA 58.985 41.667 5.96 0.00 46.71 3.41
4389 4471 5.657302 ACCTTCGTCTAGGTGAATAAGTCAT 59.343 40.000 5.96 0.00 46.71 3.06
4390 4472 6.154706 ACCTTCGTCTAGGTGAATAAGTCATT 59.845 38.462 5.96 0.00 46.71 2.57
4391 4473 6.697892 CCTTCGTCTAGGTGAATAAGTCATTC 59.302 42.308 0.00 0.00 43.01 2.67
4392 4474 5.817988 TCGTCTAGGTGAATAAGTCATTCG 58.182 41.667 0.00 0.00 45.25 3.34
4401 4483 7.527084 GTGAATAAGTCATTCGCTTAGTTCT 57.473 36.000 3.84 0.00 46.36 3.01
4402 4484 8.630278 GTGAATAAGTCATTCGCTTAGTTCTA 57.370 34.615 3.84 0.00 46.36 2.10
4403 4485 8.747666 GTGAATAAGTCATTCGCTTAGTTCTAG 58.252 37.037 3.84 0.00 46.36 2.43
4404 4486 7.921214 TGAATAAGTCATTCGCTTAGTTCTAGG 59.079 37.037 0.00 0.00 45.25 3.02
4405 4487 5.662674 AAGTCATTCGCTTAGTTCTAGGT 57.337 39.130 0.00 0.00 0.00 3.08
4406 4488 5.251601 AGTCATTCGCTTAGTTCTAGGTC 57.748 43.478 0.00 0.00 0.00 3.85
4407 4489 4.705507 AGTCATTCGCTTAGTTCTAGGTCA 59.294 41.667 0.00 0.00 0.00 4.02
4408 4490 5.361285 AGTCATTCGCTTAGTTCTAGGTCAT 59.639 40.000 0.00 0.00 0.00 3.06
4409 4491 5.688176 GTCATTCGCTTAGTTCTAGGTCATC 59.312 44.000 0.00 0.00 0.00 2.92
4410 4492 3.965292 TCGCTTAGTTCTAGGTCATCG 57.035 47.619 0.00 0.00 0.00 3.84
4411 4493 3.538591 TCGCTTAGTTCTAGGTCATCGA 58.461 45.455 0.00 0.00 0.00 3.59
4412 4494 4.135306 TCGCTTAGTTCTAGGTCATCGAT 58.865 43.478 0.00 0.00 0.00 3.59
4413 4495 4.579340 TCGCTTAGTTCTAGGTCATCGATT 59.421 41.667 0.00 0.00 0.00 3.34
4414 4496 5.067413 TCGCTTAGTTCTAGGTCATCGATTT 59.933 40.000 0.00 0.00 0.00 2.17
4415 4497 5.174035 CGCTTAGTTCTAGGTCATCGATTTG 59.826 44.000 0.00 0.00 0.00 2.32
4416 4498 6.273825 GCTTAGTTCTAGGTCATCGATTTGA 58.726 40.000 0.00 0.00 0.00 2.69
4417 4499 6.419413 GCTTAGTTCTAGGTCATCGATTTGAG 59.581 42.308 0.00 0.00 0.00 3.02
4418 4500 4.688021 AGTTCTAGGTCATCGATTTGAGC 58.312 43.478 9.64 9.64 42.94 4.26
4419 4501 4.160439 AGTTCTAGGTCATCGATTTGAGCA 59.840 41.667 17.73 5.86 44.58 4.26
4420 4502 4.736126 TCTAGGTCATCGATTTGAGCAA 57.264 40.909 17.73 3.36 44.58 3.91
4421 4503 5.282055 TCTAGGTCATCGATTTGAGCAAT 57.718 39.130 17.73 3.80 44.58 3.56
4422 4504 5.674525 TCTAGGTCATCGATTTGAGCAATT 58.325 37.500 17.73 3.20 44.58 2.32
4423 4505 6.816136 TCTAGGTCATCGATTTGAGCAATTA 58.184 36.000 17.73 4.05 44.58 1.40
4424 4506 7.272244 TCTAGGTCATCGATTTGAGCAATTAA 58.728 34.615 17.73 0.00 44.58 1.40
4425 4507 6.757897 AGGTCATCGATTTGAGCAATTAAA 57.242 33.333 17.73 0.00 44.58 1.52
4426 4508 7.338800 AGGTCATCGATTTGAGCAATTAAAT 57.661 32.000 17.73 0.00 44.58 1.40
4427 4509 8.450578 AGGTCATCGATTTGAGCAATTAAATA 57.549 30.769 17.73 0.00 44.58 1.40
4428 4510 9.071276 AGGTCATCGATTTGAGCAATTAAATAT 57.929 29.630 17.73 0.00 44.58 1.28
4429 4511 9.121517 GGTCATCGATTTGAGCAATTAAATATG 57.878 33.333 12.18 0.00 42.34 1.78
4430 4512 9.669353 GTCATCGATTTGAGCAATTAAATATGT 57.331 29.630 0.00 0.00 0.00 2.29
4431 4513 9.882996 TCATCGATTTGAGCAATTAAATATGTC 57.117 29.630 0.00 0.00 0.00 3.06
4432 4514 9.888878 CATCGATTTGAGCAATTAAATATGTCT 57.111 29.630 0.00 0.00 0.00 3.41
4433 4515 9.888878 ATCGATTTGAGCAATTAAATATGTCTG 57.111 29.630 0.00 0.00 0.00 3.51
4434 4516 9.108284 TCGATTTGAGCAATTAAATATGTCTGA 57.892 29.630 0.00 0.00 0.00 3.27
4435 4517 9.162793 CGATTTGAGCAATTAAATATGTCTGAC 57.837 33.333 0.00 0.00 0.00 3.51
4438 4520 8.791327 TTGAGCAATTAAATATGTCTGACTGA 57.209 30.769 9.51 0.00 0.00 3.41
4445 4527 9.593134 AATTAAATATGTCTGACTGACTGACTC 57.407 33.333 9.51 0.00 45.54 3.36
4459 4541 3.818210 GACTGACTCACTGACTTCTCAGA 59.182 47.826 4.73 0.00 46.32 3.27
4472 4554 0.687354 TCTCAGACTGGGTTTCTGCC 59.313 55.000 1.35 0.00 40.39 4.85
4489 4571 4.957296 TCTGCCGAGAAAAATATACTCCC 58.043 43.478 0.00 0.00 0.00 4.30
4490 4572 4.654262 TCTGCCGAGAAAAATATACTCCCT 59.346 41.667 0.00 0.00 0.00 4.20
4491 4573 4.957296 TGCCGAGAAAAATATACTCCCTC 58.043 43.478 0.00 0.00 0.00 4.30
4492 4574 4.202326 TGCCGAGAAAAATATACTCCCTCC 60.202 45.833 0.00 0.00 0.00 4.30
4493 4575 4.040584 GCCGAGAAAAATATACTCCCTCCT 59.959 45.833 0.00 0.00 0.00 3.69
4494 4576 5.454897 GCCGAGAAAAATATACTCCCTCCTT 60.455 44.000 0.00 0.00 0.00 3.36
4496 4578 6.224584 CGAGAAAAATATACTCCCTCCTTCC 58.775 44.000 0.00 0.00 0.00 3.46
4497 4579 6.176014 AGAAAAATATACTCCCTCCTTCCG 57.824 41.667 0.00 0.00 0.00 4.30
4498 4580 4.976540 AAAATATACTCCCTCCTTCCGG 57.023 45.455 0.00 0.00 0.00 5.14
4499 4581 3.917324 AATATACTCCCTCCTTCCGGA 57.083 47.619 0.00 0.00 37.82 5.14
4500 4582 3.917324 ATATACTCCCTCCTTCCGGAA 57.083 47.619 17.73 17.73 39.29 4.30
4501 4583 2.563039 ATACTCCCTCCTTCCGGAAA 57.437 50.000 19.39 3.01 39.29 3.13
4502 4584 2.563039 TACTCCCTCCTTCCGGAAAT 57.437 50.000 19.39 0.00 39.29 2.17
4503 4585 2.563039 ACTCCCTCCTTCCGGAAATA 57.437 50.000 19.39 8.14 39.29 1.40
4504 4586 2.117051 ACTCCCTCCTTCCGGAAATAC 58.883 52.381 19.39 0.00 39.29 1.89
4505 4587 2.292984 ACTCCCTCCTTCCGGAAATACT 60.293 50.000 19.39 0.00 39.29 2.12
4506 4588 2.772515 CTCCCTCCTTCCGGAAATACTT 59.227 50.000 19.39 0.00 39.29 2.24
4507 4589 2.504175 TCCCTCCTTCCGGAAATACTTG 59.496 50.000 19.39 5.06 39.29 3.16
4508 4590 2.238898 CCCTCCTTCCGGAAATACTTGT 59.761 50.000 19.39 0.00 39.29 3.16
4509 4591 3.532542 CCTCCTTCCGGAAATACTTGTC 58.467 50.000 19.39 0.00 39.29 3.18
4510 4592 3.055385 CCTCCTTCCGGAAATACTTGTCA 60.055 47.826 19.39 0.00 39.29 3.58
4511 4593 4.184629 CTCCTTCCGGAAATACTTGTCAG 58.815 47.826 19.39 1.61 39.29 3.51
4512 4594 3.835978 TCCTTCCGGAAATACTTGTCAGA 59.164 43.478 19.39 0.00 36.03 3.27
4513 4595 4.081642 TCCTTCCGGAAATACTTGTCAGAG 60.082 45.833 19.39 0.82 36.03 3.35
4514 4596 3.887621 TCCGGAAATACTTGTCAGAGG 57.112 47.619 0.00 0.00 0.00 3.69
4515 4597 3.437213 TCCGGAAATACTTGTCAGAGGA 58.563 45.455 0.00 0.00 0.00 3.71
4516 4598 3.835978 TCCGGAAATACTTGTCAGAGGAA 59.164 43.478 0.00 0.00 0.00 3.36
4517 4599 4.469945 TCCGGAAATACTTGTCAGAGGAAT 59.530 41.667 0.00 0.00 0.00 3.01
4518 4600 4.572389 CCGGAAATACTTGTCAGAGGAATG 59.428 45.833 0.00 0.00 0.00 2.67
4519 4601 5.178797 CGGAAATACTTGTCAGAGGAATGT 58.821 41.667 0.00 0.00 0.00 2.71
4520 4602 6.338146 CGGAAATACTTGTCAGAGGAATGTA 58.662 40.000 0.00 0.00 0.00 2.29
4521 4603 6.477033 CGGAAATACTTGTCAGAGGAATGTAG 59.523 42.308 0.00 0.00 0.00 2.74
4522 4604 6.763610 GGAAATACTTGTCAGAGGAATGTAGG 59.236 42.308 0.00 0.00 0.00 3.18
4523 4605 6.875972 AATACTTGTCAGAGGAATGTAGGT 57.124 37.500 0.00 0.00 0.00 3.08
4524 4606 7.973048 AATACTTGTCAGAGGAATGTAGGTA 57.027 36.000 0.00 0.00 0.00 3.08
4525 4607 8.554490 AATACTTGTCAGAGGAATGTAGGTAT 57.446 34.615 0.00 0.00 0.00 2.73
4526 4608 6.472686 ACTTGTCAGAGGAATGTAGGTATC 57.527 41.667 0.00 0.00 0.00 2.24
4527 4609 6.198639 ACTTGTCAGAGGAATGTAGGTATCT 58.801 40.000 0.00 0.00 0.00 1.98
4528 4610 7.355101 ACTTGTCAGAGGAATGTAGGTATCTA 58.645 38.462 0.00 0.00 0.00 1.98
4529 4611 7.504238 ACTTGTCAGAGGAATGTAGGTATCTAG 59.496 40.741 0.00 0.00 0.00 2.43
4530 4612 7.150447 TGTCAGAGGAATGTAGGTATCTAGA 57.850 40.000 0.00 0.00 0.00 2.43
4531 4613 6.999272 TGTCAGAGGAATGTAGGTATCTAGAC 59.001 42.308 0.00 0.00 0.00 2.59
4532 4614 6.148150 GTCAGAGGAATGTAGGTATCTAGACG 59.852 46.154 0.00 0.00 0.00 4.18
4533 4615 5.998981 CAGAGGAATGTAGGTATCTAGACGT 59.001 44.000 0.00 0.00 0.00 4.34
4534 4616 6.487331 CAGAGGAATGTAGGTATCTAGACGTT 59.513 42.308 0.00 0.00 0.00 3.99
4535 4617 7.013464 CAGAGGAATGTAGGTATCTAGACGTTT 59.987 40.741 0.00 0.00 0.00 3.60
4536 4618 7.560626 AGAGGAATGTAGGTATCTAGACGTTTT 59.439 37.037 0.00 0.00 0.00 2.43
4537 4619 8.075761 AGGAATGTAGGTATCTAGACGTTTTT 57.924 34.615 0.00 0.00 0.00 1.94
4574 4656 8.545229 ACATTCATTTTTATGCATTTTTCCGA 57.455 26.923 3.54 0.00 0.00 4.55
4575 4657 8.442384 ACATTCATTTTTATGCATTTTTCCGAC 58.558 29.630 3.54 0.00 0.00 4.79
4576 4658 7.953158 TTCATTTTTATGCATTTTTCCGACA 57.047 28.000 3.54 0.00 0.00 4.35
4577 4659 7.953158 TCATTTTTATGCATTTTTCCGACAA 57.047 28.000 3.54 0.00 0.00 3.18
4578 4660 8.016497 TCATTTTTATGCATTTTTCCGACAAG 57.984 30.769 3.54 0.00 0.00 3.16
4579 4661 7.655328 TCATTTTTATGCATTTTTCCGACAAGT 59.345 29.630 3.54 0.00 0.00 3.16
4580 4662 8.920665 CATTTTTATGCATTTTTCCGACAAGTA 58.079 29.630 3.54 0.00 0.00 2.24
4581 4663 9.651913 ATTTTTATGCATTTTTCCGACAAGTAT 57.348 25.926 3.54 0.00 0.00 2.12
4582 4664 9.482627 TTTTTATGCATTTTTCCGACAAGTATT 57.517 25.926 3.54 0.00 0.00 1.89
4583 4665 9.482627 TTTTATGCATTTTTCCGACAAGTATTT 57.517 25.926 3.54 0.00 0.00 1.40
4584 4666 8.682128 TTATGCATTTTTCCGACAAGTATTTC 57.318 30.769 3.54 0.00 0.00 2.17
4585 4667 5.465935 TGCATTTTTCCGACAAGTATTTCC 58.534 37.500 0.00 0.00 0.00 3.13
4586 4668 5.242838 TGCATTTTTCCGACAAGTATTTCCT 59.757 36.000 0.00 0.00 0.00 3.36
4587 4669 5.572896 GCATTTTTCCGACAAGTATTTCCTG 59.427 40.000 0.00 0.00 0.00 3.86
4588 4670 6.569610 GCATTTTTCCGACAAGTATTTCCTGA 60.570 38.462 0.00 0.00 0.00 3.86
4589 4671 5.934935 TTTTCCGACAAGTATTTCCTGAC 57.065 39.130 0.00 0.00 0.00 3.51
4590 4672 3.226346 TCCGACAAGTATTTCCTGACG 57.774 47.619 0.00 0.00 0.00 4.35
4591 4673 2.094390 TCCGACAAGTATTTCCTGACGG 60.094 50.000 5.97 5.97 39.30 4.79
4592 4674 2.094390 CCGACAAGTATTTCCTGACGGA 60.094 50.000 6.38 0.00 40.16 4.69
4593 4675 3.179830 CGACAAGTATTTCCTGACGGAG 58.820 50.000 0.00 0.00 41.25 4.63
4594 4676 3.522553 GACAAGTATTTCCTGACGGAGG 58.477 50.000 0.00 0.00 44.45 4.30
4595 4677 2.236395 ACAAGTATTTCCTGACGGAGGG 59.764 50.000 3.12 0.00 43.06 4.30
4596 4678 2.500098 CAAGTATTTCCTGACGGAGGGA 59.500 50.000 3.12 0.00 43.06 4.20
4597 4679 2.389715 AGTATTTCCTGACGGAGGGAG 58.610 52.381 3.12 0.00 43.06 4.30
4598 4680 2.108970 GTATTTCCTGACGGAGGGAGT 58.891 52.381 3.12 0.00 43.06 3.85
4599 4681 2.544844 ATTTCCTGACGGAGGGAGTA 57.455 50.000 3.12 0.00 43.06 2.59
4600 4682 1.553706 TTTCCTGACGGAGGGAGTAC 58.446 55.000 3.12 0.00 43.06 2.73
4601 4683 0.702902 TTCCTGACGGAGGGAGTACT 59.297 55.000 0.00 0.00 43.06 2.73
4606 4688 3.119209 CCTGACGGAGGGAGTACTAAAAC 60.119 52.174 0.00 0.00 38.36 2.43
4615 4697 4.113354 GGGAGTACTAAAACGAGCATCTG 58.887 47.826 0.00 0.00 0.00 2.90
4628 4710 3.426560 CGAGCATCTGCATTTTGCTTACA 60.427 43.478 16.38 0.00 46.21 2.41
4701 4786 4.826274 TCTAAGCAGCACCTACATTCTT 57.174 40.909 0.00 0.00 0.00 2.52
4705 4790 4.826274 AGCAGCACCTACATTCTTTCTA 57.174 40.909 0.00 0.00 0.00 2.10
4741 4826 7.672983 TTCTGCAGAGAAACATAGTAAAAGG 57.327 36.000 17.43 0.00 35.14 3.11
4742 4827 6.173339 TCTGCAGAGAAACATAGTAAAAGGG 58.827 40.000 13.74 0.00 0.00 3.95
4743 4828 4.700213 TGCAGAGAAACATAGTAAAAGGGC 59.300 41.667 0.00 0.00 0.00 5.19
4744 4829 4.944317 GCAGAGAAACATAGTAAAAGGGCT 59.056 41.667 0.00 0.00 0.00 5.19
4745 4830 5.416013 GCAGAGAAACATAGTAAAAGGGCTT 59.584 40.000 0.00 0.00 0.00 4.35
4746 4831 6.403746 GCAGAGAAACATAGTAAAAGGGCTTC 60.404 42.308 0.00 0.00 0.00 3.86
4778 4863 3.576861 TCTTGGGAGAGAGTTGAGACAA 58.423 45.455 0.00 0.00 0.00 3.18
4785 4870 4.423732 GAGAGAGTTGAGACAATGAGAGC 58.576 47.826 0.00 0.00 0.00 4.09
4818 4950 3.312404 GTCCAGCTGACACACACAT 57.688 52.632 17.39 0.00 43.85 3.21
4819 4951 0.870393 GTCCAGCTGACACACACATG 59.130 55.000 17.39 0.00 43.85 3.21
4821 4953 1.577922 CAGCTGACACACACATGCC 59.422 57.895 8.42 0.00 0.00 4.40
4822 4954 1.601759 AGCTGACACACACATGCCC 60.602 57.895 0.00 0.00 0.00 5.36
4823 4955 1.601759 GCTGACACACACATGCCCT 60.602 57.895 0.00 0.00 0.00 5.19
4846 4990 3.245048 GGATGCTTCCAAACAAACAAACG 59.755 43.478 13.60 0.00 42.12 3.60
4886 5034 4.960866 GGGGTTGGCCGGTTTCGT 62.961 66.667 1.90 0.00 34.97 3.85
4888 5036 4.337060 GGTTGGCCGGTTTCGTGC 62.337 66.667 1.90 0.00 33.95 5.34
4940 5096 1.509463 CGAACTGTCCGGGAATCGA 59.491 57.895 14.08 0.00 42.43 3.59
4945 5101 0.598680 CTGTCCGGGAATCGATGCTC 60.599 60.000 0.00 0.00 42.43 4.26
4953 5109 1.414181 GGAATCGATGCTCAGGAAGGA 59.586 52.381 2.72 0.00 0.00 3.36
4978 5134 2.588731 GCCACGTTTTTCAGGCAAC 58.411 52.632 7.41 0.00 46.26 4.17
5007 5193 4.096382 AGACTTTCTTGCACGTTTGAACAT 59.904 37.500 0.00 0.00 0.00 2.71
5017 5203 3.250762 CACGTTTGAACATCATCACCACT 59.749 43.478 0.00 0.00 0.00 4.00
5018 5204 4.450757 CACGTTTGAACATCATCACCACTA 59.549 41.667 0.00 0.00 0.00 2.74
5021 5207 3.266510 TGAACATCATCACCACTAGCC 57.733 47.619 0.00 0.00 0.00 3.93
5030 5216 2.188994 CCACTAGCCCTGCTGCTC 59.811 66.667 0.00 0.00 41.68 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.641209 AGCACTATGACTTCACATTCTCAAC 59.359 40.000 0.00 0.00 0.00 3.18
15 16 2.871182 CGGCTAGCACTATGACTTCA 57.129 50.000 18.24 0.00 0.00 3.02
33 34 3.068691 TCTTCGGAGGTGGAGGCG 61.069 66.667 0.00 0.00 0.00 5.52
46 47 4.432741 GTGCAGGGGGCCCTCTTC 62.433 72.222 26.31 20.51 46.28 2.87
74 75 3.679389 CTCCACCTTGCTAACTGTGATT 58.321 45.455 0.00 0.00 0.00 2.57
98 99 3.708451 TCATGTGTGCTCTTAGGGAGTA 58.292 45.455 0.00 0.00 43.62 2.59
99 100 2.540383 TCATGTGTGCTCTTAGGGAGT 58.460 47.619 0.00 0.00 43.62 3.85
101 102 4.716784 AGTTATCATGTGTGCTCTTAGGGA 59.283 41.667 0.00 0.00 0.00 4.20
102 103 4.813161 CAGTTATCATGTGTGCTCTTAGGG 59.187 45.833 0.00 0.00 0.00 3.53
120 121 5.178096 TCTCCTGATTGCCAATTCAGTTA 57.822 39.130 12.64 4.09 0.00 2.24
121 122 4.038271 TCTCCTGATTGCCAATTCAGTT 57.962 40.909 12.64 0.00 0.00 3.16
126 127 2.749621 GTCGTTCTCCTGATTGCCAATT 59.250 45.455 0.00 0.00 0.00 2.32
194 195 1.153449 GTGATTGTGGGGCGATCGA 60.153 57.895 21.57 0.00 40.19 3.59
196 197 1.334869 GATTGTGATTGTGGGGCGATC 59.665 52.381 0.00 0.00 38.27 3.69
210 211 6.151691 AGTGTCGAATCAAATTTGGATTGTG 58.848 36.000 17.90 10.45 35.23 3.33
250 251 9.535878 ACTTGCCTTTTTGAAATACGATTTTTA 57.464 25.926 0.00 0.00 0.00 1.52
251 252 8.432110 ACTTGCCTTTTTGAAATACGATTTTT 57.568 26.923 0.00 0.00 0.00 1.94
269 270 3.470645 ACGAGTTTTAGTGACTTGCCT 57.529 42.857 0.00 0.00 32.76 4.75
384 385 8.523915 AGCAGTTATGGATTTGTGATTATGAA 57.476 30.769 0.00 0.00 0.00 2.57
477 478 2.731691 TTCGTGCCTGACCCAAGCTC 62.732 60.000 0.00 0.00 0.00 4.09
481 482 2.112297 GGTTCGTGCCTGACCCAA 59.888 61.111 0.00 0.00 0.00 4.12
489 490 4.681978 ACGCCTGAGGTTCGTGCC 62.682 66.667 3.35 0.00 34.92 5.01
539 540 2.808919 TCAGGTAGGTCTTCACTCAGG 58.191 52.381 0.00 0.00 0.00 3.86
569 570 1.203001 CCACTTAGGGCCAGTTTGGAA 60.203 52.381 6.18 0.00 40.96 3.53
580 581 1.078143 GCTGGAGTGCCACTTAGGG 60.078 63.158 0.00 0.00 39.92 3.53
634 635 9.519191 TGAGGTTCATCATTTTTCTTCTATTGA 57.481 29.630 0.00 0.00 0.00 2.57
853 855 6.018669 GTGCTAACAATAGTGCTTAGCTTAGG 60.019 42.308 24.27 0.00 40.81 2.69
890 893 2.282180 GCCCACCATTGTGACCGT 60.282 61.111 0.00 0.00 45.76 4.83
891 894 3.061848 GGCCCACCATTGTGACCG 61.062 66.667 0.00 0.00 45.76 4.79
892 895 2.679996 GGGCCCACCATTGTGACC 60.680 66.667 19.95 0.00 45.76 4.02
948 956 0.315251 TCAGAGTGCTTGGACTCACG 59.685 55.000 21.03 13.07 44.25 4.35
950 958 1.069204 GTGTCAGAGTGCTTGGACTCA 59.931 52.381 21.03 2.29 44.25 3.41
959 967 2.216898 AGCTTCTTTGTGTCAGAGTGC 58.783 47.619 0.00 0.00 0.00 4.40
1098 1127 1.599047 CATGAGGGCGTCCAACTCT 59.401 57.895 9.71 0.00 34.83 3.24
1236 1271 2.034532 TCGGGTACGGAGAGTGCA 59.965 61.111 0.00 0.00 41.39 4.57
1308 1343 2.580867 GAGAGCGTTGCGAGCGAT 60.581 61.111 0.00 0.00 40.04 4.58
1394 1429 0.673956 GAACGAGTTGAAGGGGAGGC 60.674 60.000 0.00 0.00 0.00 4.70
1551 1586 3.319198 GTGGGCGTGAGGAAGGGA 61.319 66.667 0.00 0.00 0.00 4.20
1554 1589 1.672356 CTTGGTGGGCGTGAGGAAG 60.672 63.158 0.00 0.00 0.00 3.46
1575 1610 2.202892 GTGATCTCGGGCGGGAAC 60.203 66.667 0.00 0.00 0.00 3.62
1596 1631 2.516888 CCGGGTGAGGTTGGTGAGT 61.517 63.158 0.00 0.00 0.00 3.41
1612 1647 3.955101 CGCGGAGAGGTAGAGCCG 61.955 72.222 0.00 0.00 46.14 5.52
1613 1648 3.597728 CCGCGGAGAGGTAGAGCC 61.598 72.222 24.07 0.00 44.52 4.70
1735 1770 0.614697 TGGAGATTGACGAGCTGGGA 60.615 55.000 0.00 0.00 0.00 4.37
1820 1855 3.016474 GCGTCGAAGAACTGCAGCC 62.016 63.158 15.27 6.07 39.69 4.85
1860 1895 2.757508 CGGAGCTCAGAGAGGCCA 60.758 66.667 17.19 0.00 0.00 5.36
2175 2221 2.031516 CCTGAACCTCTGCAGCGTG 61.032 63.158 9.47 1.88 0.00 5.34
2220 2266 2.997315 CAGAGTCCCTCGGGCACA 60.997 66.667 0.00 0.00 35.36 4.57
2280 2326 3.197790 CTGATGCCGCCGGTGAAG 61.198 66.667 18.79 0.88 0.00 3.02
2373 2419 0.837691 TCCCAGCATCGCCTATGGAT 60.838 55.000 0.00 0.00 35.99 3.41
2376 2422 1.233285 GCTTCCCAGCATCGCCTATG 61.233 60.000 0.00 0.00 46.49 2.23
2464 2510 1.608717 ATGTCCAGGCTGTCGAGACC 61.609 60.000 14.43 0.00 0.00 3.85
2465 2511 0.247736 AATGTCCAGGCTGTCGAGAC 59.752 55.000 14.43 13.50 0.00 3.36
2487 2533 4.891727 CCGCTGATCCCGTTCCCG 62.892 72.222 0.00 0.00 0.00 5.14
2604 2650 1.509787 CAACGAATTCAGCCGCGTG 60.510 57.895 4.92 0.00 37.03 5.34
2676 2722 1.981495 AGGTTCAGGTAGCTCAGCTTT 59.019 47.619 3.31 0.00 40.44 3.51
2700 2746 1.881252 CCCGTCGAGCCGGTTATTG 60.881 63.158 12.83 0.00 46.66 1.90
2766 2812 3.966543 CACAGGCCGGGGTTTCCT 61.967 66.667 8.08 0.00 0.00 3.36
3016 3065 2.576893 CGTCGAACGCCATCATCCG 61.577 63.158 0.00 0.00 33.65 4.18
3096 3145 1.372499 GAGCTTGACGCGGTACACA 60.372 57.895 12.47 0.00 45.59 3.72
3570 3619 1.144936 GTGGAGGATCTTGGCGAGG 59.855 63.158 0.97 0.00 33.73 4.63
3699 3748 1.797933 CACGTCGCTCTTCTCGGTG 60.798 63.158 0.00 0.00 0.00 4.94
3702 3751 0.165295 TGTACACGTCGCTCTTCTCG 59.835 55.000 0.00 0.00 0.00 4.04
4023 4072 1.003233 GACCTTGACCTCCAGTGCC 60.003 63.158 0.00 0.00 0.00 5.01
4026 4075 1.524863 CGACGACCTTGACCTCCAGT 61.525 60.000 0.00 0.00 0.00 4.00
4046 4095 0.034477 AACATTGAACGGCTAGGGGG 60.034 55.000 0.00 0.00 0.00 5.40
4048 4097 2.009774 CTGAACATTGAACGGCTAGGG 58.990 52.381 0.00 0.00 0.00 3.53
4062 4111 1.612676 AAATGCTCAGCTGCTGAACA 58.387 45.000 30.83 30.83 40.18 3.18
4066 4115 0.885879 TCCAAAATGCTCAGCTGCTG 59.114 50.000 23.31 23.31 0.00 4.41
4067 4116 1.749634 GATCCAAAATGCTCAGCTGCT 59.250 47.619 9.47 0.00 0.00 4.24
4068 4117 1.202382 GGATCCAAAATGCTCAGCTGC 60.202 52.381 9.47 0.00 0.00 5.25
4069 4118 2.097036 TGGATCCAAAATGCTCAGCTG 58.903 47.619 13.46 7.63 0.00 4.24
4070 4119 2.097825 GTGGATCCAAAATGCTCAGCT 58.902 47.619 18.20 0.00 0.00 4.24
4071 4120 1.202222 CGTGGATCCAAAATGCTCAGC 60.202 52.381 18.20 0.00 0.00 4.26
4116 4174 4.899239 GGCTCAGATCACGGCCGG 62.899 72.222 31.76 18.67 35.08 6.13
4123 4181 3.396911 GACGCGTCGGCTCAGATCA 62.397 63.158 25.19 0.00 36.88 2.92
4141 4199 1.002366 GATGCTCTACACACGCTTGG 58.998 55.000 0.00 0.00 0.00 3.61
4160 4218 8.027189 TCTTACTACTAACACAACACATGCTAG 58.973 37.037 0.00 0.00 0.00 3.42
4185 4243 3.813166 TCACCAACGAACAATCTTCCTTC 59.187 43.478 0.00 0.00 0.00 3.46
4186 4244 3.815809 TCACCAACGAACAATCTTCCTT 58.184 40.909 0.00 0.00 0.00 3.36
4188 4246 3.813166 TCTTCACCAACGAACAATCTTCC 59.187 43.478 0.00 0.00 0.00 3.46
4189 4247 5.418310 TTCTTCACCAACGAACAATCTTC 57.582 39.130 0.00 0.00 0.00 2.87
4230 4288 9.835389 ACTAGTAATTAACTTTGGTACACACAA 57.165 29.630 0.00 0.00 37.67 3.33
4252 4313 8.189460 GTCACTGGTAATTTCCTACAGTACTAG 58.811 40.741 0.00 0.00 31.66 2.57
4255 4316 6.694447 TGTCACTGGTAATTTCCTACAGTAC 58.306 40.000 2.53 0.00 0.00 2.73
4257 4318 5.818678 TGTCACTGGTAATTTCCTACAGT 57.181 39.130 2.53 0.00 0.00 3.55
4259 4320 6.367374 TGATGTCACTGGTAATTTCCTACA 57.633 37.500 2.53 2.93 0.00 2.74
4277 4338 0.804364 AATCAACGCACGCATGATGT 59.196 45.000 11.24 0.00 34.21 3.06
4284 4345 1.696832 GGAGAGGAATCAACGCACGC 61.697 60.000 0.00 0.00 0.00 5.34
4285 4346 0.389817 TGGAGAGGAATCAACGCACG 60.390 55.000 0.00 0.00 0.00 5.34
4287 4348 2.237143 AGAATGGAGAGGAATCAACGCA 59.763 45.455 0.00 0.00 0.00 5.24
4288 4349 2.869192 GAGAATGGAGAGGAATCAACGC 59.131 50.000 0.00 0.00 0.00 4.84
4289 4350 3.133721 AGGAGAATGGAGAGGAATCAACG 59.866 47.826 0.00 0.00 0.00 4.10
4290 4351 4.769345 AGGAGAATGGAGAGGAATCAAC 57.231 45.455 0.00 0.00 0.00 3.18
4291 4352 4.627255 GCAAGGAGAATGGAGAGGAATCAA 60.627 45.833 0.00 0.00 0.00 2.57
4292 4353 3.118112 GCAAGGAGAATGGAGAGGAATCA 60.118 47.826 0.00 0.00 0.00 2.57
4293 4354 3.136260 AGCAAGGAGAATGGAGAGGAATC 59.864 47.826 0.00 0.00 0.00 2.52
4294 4355 3.121688 AGCAAGGAGAATGGAGAGGAAT 58.878 45.455 0.00 0.00 0.00 3.01
4295 4356 2.555664 AGCAAGGAGAATGGAGAGGAA 58.444 47.619 0.00 0.00 0.00 3.36
4296 4357 2.260639 AGCAAGGAGAATGGAGAGGA 57.739 50.000 0.00 0.00 0.00 3.71
4297 4358 3.303938 TCTAGCAAGGAGAATGGAGAGG 58.696 50.000 0.00 0.00 0.00 3.69
4301 4376 5.367644 TGATTGATCTAGCAAGGAGAATGGA 59.632 40.000 0.00 0.00 0.00 3.41
4309 4384 3.887110 TGCCAATGATTGATCTAGCAAGG 59.113 43.478 6.76 11.11 0.00 3.61
4314 4389 4.711399 TGACCTGCCAATGATTGATCTAG 58.289 43.478 6.76 0.00 0.00 2.43
4367 4449 6.415280 CGAATGACTTATTCACCTAGACGAAG 59.585 42.308 0.00 0.00 44.42 3.79
4369 4451 5.732528 GCGAATGACTTATTCACCTAGACGA 60.733 44.000 0.00 0.00 44.42 4.20
4370 4452 4.441415 GCGAATGACTTATTCACCTAGACG 59.559 45.833 0.00 0.00 44.42 4.18
4371 4453 5.593010 AGCGAATGACTTATTCACCTAGAC 58.407 41.667 0.00 0.00 44.42 2.59
4372 4454 5.854010 AGCGAATGACTTATTCACCTAGA 57.146 39.130 0.00 0.00 44.42 2.43
4373 4455 7.203910 ACTAAGCGAATGACTTATTCACCTAG 58.796 38.462 0.00 0.00 44.42 3.02
4374 4456 7.108841 ACTAAGCGAATGACTTATTCACCTA 57.891 36.000 0.00 0.00 44.42 3.08
4376 4458 6.535508 AGAACTAAGCGAATGACTTATTCACC 59.464 38.462 0.00 0.00 44.42 4.02
4377 4459 7.527084 AGAACTAAGCGAATGACTTATTCAC 57.473 36.000 0.00 0.00 44.42 3.18
4379 4461 7.921745 ACCTAGAACTAAGCGAATGACTTATTC 59.078 37.037 0.00 0.00 41.46 1.75
4380 4462 7.783042 ACCTAGAACTAAGCGAATGACTTATT 58.217 34.615 0.00 0.00 0.00 1.40
4383 4465 5.185249 TGACCTAGAACTAAGCGAATGACTT 59.815 40.000 0.00 0.00 0.00 3.01
4384 4466 4.705507 TGACCTAGAACTAAGCGAATGACT 59.294 41.667 0.00 0.00 0.00 3.41
4385 4467 4.995124 TGACCTAGAACTAAGCGAATGAC 58.005 43.478 0.00 0.00 0.00 3.06
4386 4468 5.505819 CGATGACCTAGAACTAAGCGAATGA 60.506 44.000 0.00 0.00 0.00 2.57
4387 4469 4.677378 CGATGACCTAGAACTAAGCGAATG 59.323 45.833 0.00 0.00 0.00 2.67
4388 4470 4.579340 TCGATGACCTAGAACTAAGCGAAT 59.421 41.667 0.00 0.00 0.00 3.34
4389 4471 3.943381 TCGATGACCTAGAACTAAGCGAA 59.057 43.478 0.00 0.00 0.00 4.70
4390 4472 3.538591 TCGATGACCTAGAACTAAGCGA 58.461 45.455 0.00 0.00 0.00 4.93
4391 4473 3.965292 TCGATGACCTAGAACTAAGCG 57.035 47.619 0.00 0.00 0.00 4.68
4392 4474 6.273825 TCAAATCGATGACCTAGAACTAAGC 58.726 40.000 0.00 0.00 0.00 3.09
4393 4475 6.419413 GCTCAAATCGATGACCTAGAACTAAG 59.581 42.308 0.00 0.00 0.00 2.18
4394 4476 6.127451 TGCTCAAATCGATGACCTAGAACTAA 60.127 38.462 0.00 0.00 0.00 2.24
4395 4477 5.359860 TGCTCAAATCGATGACCTAGAACTA 59.640 40.000 0.00 0.00 0.00 2.24
4396 4478 4.160439 TGCTCAAATCGATGACCTAGAACT 59.840 41.667 0.00 0.00 0.00 3.01
4397 4479 4.433615 TGCTCAAATCGATGACCTAGAAC 58.566 43.478 0.00 0.00 0.00 3.01
4398 4480 4.736126 TGCTCAAATCGATGACCTAGAA 57.264 40.909 0.00 0.00 0.00 2.10
4399 4481 4.736126 TTGCTCAAATCGATGACCTAGA 57.264 40.909 0.00 0.00 0.00 2.43
4400 4482 5.998454 AATTGCTCAAATCGATGACCTAG 57.002 39.130 0.00 0.00 0.00 3.02
4401 4483 7.857734 TTTAATTGCTCAAATCGATGACCTA 57.142 32.000 0.00 0.00 0.00 3.08
4402 4484 6.757897 TTTAATTGCTCAAATCGATGACCT 57.242 33.333 0.00 0.00 0.00 3.85
4403 4485 9.121517 CATATTTAATTGCTCAAATCGATGACC 57.878 33.333 0.00 0.00 0.00 4.02
4404 4486 9.669353 ACATATTTAATTGCTCAAATCGATGAC 57.331 29.630 0.00 0.00 0.00 3.06
4405 4487 9.882996 GACATATTTAATTGCTCAAATCGATGA 57.117 29.630 0.00 0.00 0.00 2.92
4406 4488 9.888878 AGACATATTTAATTGCTCAAATCGATG 57.111 29.630 0.00 0.00 0.00 3.84
4407 4489 9.888878 CAGACATATTTAATTGCTCAAATCGAT 57.111 29.630 0.00 0.00 0.00 3.59
4408 4490 9.108284 TCAGACATATTTAATTGCTCAAATCGA 57.892 29.630 0.00 0.00 0.00 3.59
4409 4491 9.162793 GTCAGACATATTTAATTGCTCAAATCG 57.837 33.333 0.00 0.00 0.00 3.34
4412 4494 9.230122 TCAGTCAGACATATTTAATTGCTCAAA 57.770 29.630 2.66 0.00 0.00 2.69
4413 4495 8.668353 GTCAGTCAGACATATTTAATTGCTCAA 58.332 33.333 2.66 0.00 46.77 3.02
4414 4496 8.201554 GTCAGTCAGACATATTTAATTGCTCA 57.798 34.615 2.66 0.00 46.77 4.26
4430 4512 2.881513 GTCAGTGAGTCAGTCAGTCAGA 59.118 50.000 0.00 0.00 36.62 3.27
4431 4513 2.884012 AGTCAGTGAGTCAGTCAGTCAG 59.116 50.000 0.00 0.00 36.62 3.51
4432 4514 2.937519 AGTCAGTGAGTCAGTCAGTCA 58.062 47.619 0.00 0.00 36.62 3.41
4433 4515 3.568007 AGAAGTCAGTGAGTCAGTCAGTC 59.432 47.826 0.00 0.00 36.62 3.51
4434 4516 3.561143 AGAAGTCAGTGAGTCAGTCAGT 58.439 45.455 0.00 0.00 39.67 3.41
4435 4517 3.567585 TGAGAAGTCAGTGAGTCAGTCAG 59.432 47.826 0.00 0.00 35.13 3.51
4436 4518 3.555966 TGAGAAGTCAGTGAGTCAGTCA 58.444 45.455 0.00 2.23 0.00 3.41
4437 4519 4.159377 CTGAGAAGTCAGTGAGTCAGTC 57.841 50.000 0.00 0.00 44.72 3.51
4459 4541 0.472471 TTTCTCGGCAGAAACCCAGT 59.528 50.000 7.67 0.00 42.66 4.00
4472 4554 6.224584 GGAAGGAGGGAGTATATTTTTCTCG 58.775 44.000 0.00 0.00 0.00 4.04
4492 4574 4.081642 TCCTCTGACAAGTATTTCCGGAAG 60.082 45.833 17.97 7.17 0.00 3.46
4493 4575 3.835978 TCCTCTGACAAGTATTTCCGGAA 59.164 43.478 14.35 14.35 0.00 4.30
4494 4576 3.437213 TCCTCTGACAAGTATTTCCGGA 58.563 45.455 0.00 0.00 0.00 5.14
4496 4578 5.178797 ACATTCCTCTGACAAGTATTTCCG 58.821 41.667 0.00 0.00 0.00 4.30
4497 4579 6.763610 CCTACATTCCTCTGACAAGTATTTCC 59.236 42.308 0.00 0.00 0.00 3.13
4498 4580 7.331791 ACCTACATTCCTCTGACAAGTATTTC 58.668 38.462 0.00 0.00 0.00 2.17
4499 4581 7.259088 ACCTACATTCCTCTGACAAGTATTT 57.741 36.000 0.00 0.00 0.00 1.40
4500 4582 6.875972 ACCTACATTCCTCTGACAAGTATT 57.124 37.500 0.00 0.00 0.00 1.89
4501 4583 8.007742 AGATACCTACATTCCTCTGACAAGTAT 58.992 37.037 0.00 0.00 0.00 2.12
4502 4584 7.355101 AGATACCTACATTCCTCTGACAAGTA 58.645 38.462 0.00 0.00 0.00 2.24
4503 4585 6.198639 AGATACCTACATTCCTCTGACAAGT 58.801 40.000 0.00 0.00 0.00 3.16
4504 4586 6.723298 AGATACCTACATTCCTCTGACAAG 57.277 41.667 0.00 0.00 0.00 3.16
4505 4587 7.502895 GTCTAGATACCTACATTCCTCTGACAA 59.497 40.741 0.00 0.00 0.00 3.18
4506 4588 6.999272 GTCTAGATACCTACATTCCTCTGACA 59.001 42.308 0.00 0.00 0.00 3.58
4507 4589 6.148150 CGTCTAGATACCTACATTCCTCTGAC 59.852 46.154 0.00 0.00 0.00 3.51
4508 4590 6.183361 ACGTCTAGATACCTACATTCCTCTGA 60.183 42.308 0.00 0.00 0.00 3.27
4509 4591 5.998981 ACGTCTAGATACCTACATTCCTCTG 59.001 44.000 0.00 0.00 0.00 3.35
4510 4592 6.190346 ACGTCTAGATACCTACATTCCTCT 57.810 41.667 0.00 0.00 0.00 3.69
4511 4593 6.880942 AACGTCTAGATACCTACATTCCTC 57.119 41.667 0.00 0.00 0.00 3.71
4512 4594 7.657023 AAAACGTCTAGATACCTACATTCCT 57.343 36.000 0.00 0.00 0.00 3.36
4548 4630 9.645059 TCGGAAAAATGCATAAAAATGAATGTA 57.355 25.926 0.00 0.00 0.00 2.29
4549 4631 8.442384 GTCGGAAAAATGCATAAAAATGAATGT 58.558 29.630 0.00 0.00 0.00 2.71
4550 4632 8.441608 TGTCGGAAAAATGCATAAAAATGAATG 58.558 29.630 0.00 0.00 0.00 2.67
4551 4633 8.545229 TGTCGGAAAAATGCATAAAAATGAAT 57.455 26.923 0.00 0.00 0.00 2.57
4552 4634 7.953158 TGTCGGAAAAATGCATAAAAATGAA 57.047 28.000 0.00 0.00 0.00 2.57
4553 4635 7.655328 ACTTGTCGGAAAAATGCATAAAAATGA 59.345 29.630 0.00 0.00 0.00 2.57
4554 4636 7.795859 ACTTGTCGGAAAAATGCATAAAAATG 58.204 30.769 0.00 0.00 0.00 2.32
4555 4637 7.961325 ACTTGTCGGAAAAATGCATAAAAAT 57.039 28.000 0.00 0.00 0.00 1.82
4556 4638 9.482627 AATACTTGTCGGAAAAATGCATAAAAA 57.517 25.926 0.00 0.00 0.00 1.94
4557 4639 9.482627 AAATACTTGTCGGAAAAATGCATAAAA 57.517 25.926 0.00 0.00 0.00 1.52
4558 4640 9.134734 GAAATACTTGTCGGAAAAATGCATAAA 57.865 29.630 0.00 0.00 0.00 1.40
4559 4641 7.757624 GGAAATACTTGTCGGAAAAATGCATAA 59.242 33.333 0.00 0.00 0.00 1.90
4560 4642 7.122055 AGGAAATACTTGTCGGAAAAATGCATA 59.878 33.333 0.00 0.00 0.00 3.14
4561 4643 6.071391 AGGAAATACTTGTCGGAAAAATGCAT 60.071 34.615 0.00 0.00 0.00 3.96
4562 4644 5.242838 AGGAAATACTTGTCGGAAAAATGCA 59.757 36.000 0.00 0.00 0.00 3.96
4563 4645 5.572896 CAGGAAATACTTGTCGGAAAAATGC 59.427 40.000 0.00 0.00 0.00 3.56
4564 4646 6.801862 GTCAGGAAATACTTGTCGGAAAAATG 59.198 38.462 0.00 0.00 0.00 2.32
4565 4647 6.348213 CGTCAGGAAATACTTGTCGGAAAAAT 60.348 38.462 0.00 0.00 34.79 1.82
4566 4648 5.049954 CGTCAGGAAATACTTGTCGGAAAAA 60.050 40.000 0.00 0.00 34.79 1.94
4567 4649 4.449743 CGTCAGGAAATACTTGTCGGAAAA 59.550 41.667 0.00 0.00 34.79 2.29
4568 4650 3.991773 CGTCAGGAAATACTTGTCGGAAA 59.008 43.478 0.00 0.00 34.79 3.13
4569 4651 3.581755 CGTCAGGAAATACTTGTCGGAA 58.418 45.455 0.00 0.00 34.79 4.30
4570 4652 3.226346 CGTCAGGAAATACTTGTCGGA 57.774 47.619 0.00 0.00 34.79 4.55
4571 4653 2.268298 CCGTCAGGAAATACTTGTCGG 58.732 52.381 0.00 0.00 45.76 4.79
4572 4654 3.226346 TCCGTCAGGAAATACTTGTCG 57.774 47.619 0.00 0.00 45.12 4.35
4584 4666 2.431954 TTAGTACTCCCTCCGTCAGG 57.568 55.000 0.00 0.00 43.01 3.86
4585 4667 3.427233 CGTTTTAGTACTCCCTCCGTCAG 60.427 52.174 0.00 0.00 0.00 3.51
4586 4668 2.489329 CGTTTTAGTACTCCCTCCGTCA 59.511 50.000 0.00 0.00 0.00 4.35
4587 4669 2.749621 TCGTTTTAGTACTCCCTCCGTC 59.250 50.000 0.00 0.00 0.00 4.79
4588 4670 2.751806 CTCGTTTTAGTACTCCCTCCGT 59.248 50.000 0.00 0.00 0.00 4.69
4589 4671 2.479219 GCTCGTTTTAGTACTCCCTCCG 60.479 54.545 0.00 0.00 0.00 4.63
4590 4672 2.494870 TGCTCGTTTTAGTACTCCCTCC 59.505 50.000 0.00 0.00 0.00 4.30
4591 4673 3.863142 TGCTCGTTTTAGTACTCCCTC 57.137 47.619 0.00 0.00 0.00 4.30
4592 4674 4.024670 AGATGCTCGTTTTAGTACTCCCT 58.975 43.478 0.00 0.00 0.00 4.20
4593 4675 4.113354 CAGATGCTCGTTTTAGTACTCCC 58.887 47.826 0.00 0.00 0.00 4.30
4594 4676 3.552294 GCAGATGCTCGTTTTAGTACTCC 59.448 47.826 0.00 0.00 38.21 3.85
4595 4677 4.174009 TGCAGATGCTCGTTTTAGTACTC 58.826 43.478 0.00 0.00 42.66 2.59
4596 4678 4.188247 TGCAGATGCTCGTTTTAGTACT 57.812 40.909 6.35 0.00 42.66 2.73
4597 4679 5.470845 AATGCAGATGCTCGTTTTAGTAC 57.529 39.130 6.35 0.00 42.66 2.73
4598 4680 6.314018 CAAAATGCAGATGCTCGTTTTAGTA 58.686 36.000 6.35 0.00 42.66 1.82
4599 4681 5.156355 CAAAATGCAGATGCTCGTTTTAGT 58.844 37.500 6.35 0.00 42.66 2.24
4600 4682 4.030977 GCAAAATGCAGATGCTCGTTTTAG 59.969 41.667 12.40 7.24 44.26 1.85
4601 4683 3.919804 GCAAAATGCAGATGCTCGTTTTA 59.080 39.130 12.40 0.00 44.26 1.52
4628 4710 4.096984 GCCTGACTGCTAACTATGCATTTT 59.903 41.667 3.54 1.04 39.86 1.82
4633 4715 2.208431 CTGCCTGACTGCTAACTATGC 58.792 52.381 0.00 0.00 0.00 3.14
4701 4786 3.244875 TGCAGAAATCCAGGCAGTTAGAA 60.245 43.478 0.00 0.00 0.00 2.10
4705 4790 1.542492 CTGCAGAAATCCAGGCAGTT 58.458 50.000 8.42 0.00 46.47 3.16
4735 4820 8.919721 AAGAGTCATCTTGCGAAGCCCTTTTA 62.920 42.308 0.00 0.00 45.75 1.52
4737 4822 6.858945 AAGAGTCATCTTGCGAAGCCCTTT 62.859 45.833 0.00 0.00 45.75 3.11
4739 4824 4.002068 AAGAGTCATCTTGCGAAGCCCT 62.002 50.000 0.00 0.00 45.75 5.19
4740 4825 1.677217 AAGAGTCATCTTGCGAAGCCC 60.677 52.381 0.00 0.00 45.75 5.19
4741 4826 1.731720 AAGAGTCATCTTGCGAAGCC 58.268 50.000 0.00 0.00 45.75 4.35
4757 4842 3.244887 TGTCTCAACTCTCTCCCAAGA 57.755 47.619 0.00 0.00 0.00 3.02
4762 4847 4.677779 GCTCTCATTGTCTCAACTCTCTCC 60.678 50.000 0.00 0.00 0.00 3.71
4770 4855 2.558359 TCTGTCGCTCTCATTGTCTCAA 59.442 45.455 0.00 0.00 0.00 3.02
4778 4863 2.098614 ACACATCTCTGTCGCTCTCAT 58.901 47.619 0.00 0.00 31.62 2.90
4785 4870 2.332104 CTGGACAACACATCTCTGTCG 58.668 52.381 0.00 0.00 40.32 4.35
4923 5075 1.571919 CATCGATTCCCGGACAGTTC 58.428 55.000 0.73 0.00 39.14 3.01
4940 5096 0.755686 GGATCGTCCTTCCTGAGCAT 59.244 55.000 0.00 0.00 32.53 3.79
4945 5101 2.107141 GGCGGATCGTCCTTCCTG 59.893 66.667 3.15 0.00 33.30 3.86
4953 5109 0.881159 TGAAAAACGTGGCGGATCGT 60.881 50.000 0.00 0.00 42.12 3.73
4978 5134 0.438830 GTGCAAGAAAGTCTACGCGG 59.561 55.000 12.47 0.00 30.25 6.46
5007 5193 0.618680 AGCAGGGCTAGTGGTGATGA 60.619 55.000 0.00 0.00 36.99 2.92
5017 5203 3.790437 GCAGGAGCAGCAGGGCTA 61.790 66.667 0.00 0.00 45.99 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.