AutoCloner

Multiple sequence alignment - TraesCS5B01G011900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G011900	chr5B	100.000	2261	0	0	1	2261	11605560	11603300	0.000000e+00	4176.0
1	TraesCS5B01G011900	chr5B	79.950	1606	233	51	76	1667	11477412	11478942	0.000000e+00	1099.0
2	TraesCS5B01G011900	chr5B	82.838	740	112	9	8	739	11503181	11503913	0.000000e+00	649.0
3	TraesCS5B01G011900	chr5B	79.270	685	85	25	844	1521	564478391	564479025	2.080000e-115	425.0
4	TraesCS5B01G011900	chr5B	77.609	527	61	32	996	1521	564179424	564179894	1.330000e-67	267.0
5	TraesCS5B01G011900	chr5B	80.408	245	24	9	1571	1813	564511265	564511487	5.000000e-37	165.0
6	TraesCS5B01G011900	chr5B	84.967	153	18	4	1571	1720	564220163	564220313	1.400000e-32	150.0
7	TraesCS5B01G011900	chr5B	84.058	138	20	2	1889	2025	564511280	564511416	5.070000e-27	132.0
8	TraesCS5B01G011900	chr5B	81.081	148	23	4	1882	2025	11480714	11480860	1.840000e-21	113.0
9	TraesCS5B01G011900	chr1A	91.581	1663	102	16	1	1660	99641038	99642665	0.000000e+00	2261.0
10	TraesCS5B01G011900	chr1A	80.674	1335	185	35	76	1406	99749840	99748575	0.000000e+00	968.0
11	TraesCS5B01G011900	chr1A	91.486	552	36	3	1719	2259	99650733	99651284	0.000000e+00	749.0
12	TraesCS5B01G011900	chr1A	83.649	740	113	5	1	739	99726979	99726247	0.000000e+00	689.0
13	TraesCS5B01G011900	chr1A	84.177	474	52	7	838	1311	99726175	99725725	2.670000e-119	438.0
14	TraesCS5B01G011900	chr1A	86.250	240	29	3	1560	1797	99650880	99651117	8.010000e-65	257.0
15	TraesCS5B01G011900	chr1A	90.769	65	6	0	1749	1813	99720916	99720852	1.110000e-13	87.9
16	TraesCS5B01G011900	chr1A	92.500	40	3	0	1986	2025	99746122	99746083	8.720000e-05	58.4
17	TraesCS5B01G011900	chr5D	90.806	881	53	2	1	880	11420865	11421718	0.000000e+00	1153.0
18	TraesCS5B01G011900	chr5D	79.789	1608	217	52	76	1667	11614236	11612721	0.000000e+00	1070.0
19	TraesCS5B01G011900	chr5D	81.438	1266	187	33	4	1259	11364759	11365986	0.000000e+00	992.0
20	TraesCS5B01G011900	chr5D	90.296	742	42	16	1461	2192	11421713	11422434	0.000000e+00	944.0
21	TraesCS5B01G011900	chr5D	84.490	735	106	6	6	739	11576894	11576167	0.000000e+00	719.0
22	TraesCS5B01G011900	chr5D	78.125	672	92	24	856	1521	459759176	459759798	2.120000e-100	375.0
23	TraesCS5B01G011900	chr5D	78.125	672	92	25	856	1521	459763637	459764259	2.120000e-100	375.0
24	TraesCS5B01G011900	chr5D	83.486	218	33	2	1864	2079	11366292	11366508	1.370000e-47	200.0
25	TraesCS5B01G011900	chr5D	87.209	172	16	3	1540	1709	11376582	11376749	8.240000e-45	191.0
26	TraesCS5B01G011900	chr5D	79.757	247	27	8	1569	1813	459743485	459743710	8.360000e-35	158.0
27	TraesCS5B01G011900	chr5D	81.081	148	23	4	1882	2025	11611797	11611651	1.840000e-21	113.0
28	TraesCS5B01G011900	chrUn	81.602	1261	194	22	4	1259	312563084	312564311	0.000000e+00	1009.0
29	TraesCS5B01G011900	chrUn	84.397	141	18	4	1888	2025	422505451	422505312	3.920000e-28	135.0
30	TraesCS5B01G011900	chr5A	79.712	695	82	32	839	1521	579843667	579843020	4.430000e-122	448.0
31	TraesCS5B01G011900	chr5A	80.000	245	26	7	1571	1813	579193043	579192820	2.320000e-35	159.0
32	TraesCS5B01G011900	chr5A	84.211	152	22	1	1571	1720	579894890	579895041	1.810000e-31	147.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G011900	chr5B	11603300	11605560	2260	True	4176.0	4176	100.0000	1	2261	1	chr5B.!!$R1	2260
1	TraesCS5B01G011900	chr5B	11503181	11503913	732	False	649.0	649	82.8380	8	739	1	chr5B.!!$F1	731
2	TraesCS5B01G011900	chr5B	11477412	11480860	3448	False	606.0	1099	80.5155	76	2025	2	chr5B.!!$F5	1949
3	TraesCS5B01G011900	chr5B	564478391	564479025	634	False	425.0	425	79.2700	844	1521	1	chr5B.!!$F4	677
4	TraesCS5B01G011900	chr1A	99641038	99642665	1627	False	2261.0	2261	91.5810	1	1660	1	chr1A.!!$F1	1659
5	TraesCS5B01G011900	chr1A	99725725	99726979	1254	True	563.5	689	83.9130	1	1311	2	chr1A.!!$R2	1310
6	TraesCS5B01G011900	chr1A	99746083	99749840	3757	True	513.2	968	86.5870	76	2025	2	chr1A.!!$R3	1949
7	TraesCS5B01G011900	chr1A	99650733	99651284	551	False	503.0	749	88.8680	1560	2259	2	chr1A.!!$F2	699
8	TraesCS5B01G011900	chr5D	11420865	11422434	1569	False	1048.5	1153	90.5510	1	2192	2	chr5D.!!$F4	2191
9	TraesCS5B01G011900	chr5D	11576167	11576894	727	True	719.0	719	84.4900	6	739	1	chr5D.!!$R1	733
10	TraesCS5B01G011900	chr5D	11364759	11366508	1749	False	596.0	992	82.4620	4	2079	2	chr5D.!!$F3	2075
11	TraesCS5B01G011900	chr5D	11611651	11614236	2585	True	591.5	1070	80.4350	76	2025	2	chr5D.!!$R2	1949
12	TraesCS5B01G011900	chr5D	459759176	459764259	5083	False	375.0	375	78.1250	856	1521	2	chr5D.!!$F5	665
13	TraesCS5B01G011900	chrUn	312563084	312564311	1227	False	1009.0	1009	81.6020	4	1259	1	chrUn.!!$F1	1255
14	TraesCS5B01G011900	chr5A	579843020	579843667	647	True	448.0	448	79.7120	839	1521	1	chr5A.!!$R2	682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
58	70	0.107831	CTCACCCACCTCGTTTCCAA	59.892	55.0	0.0	0.0	0.0	3.53	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1359	1428	0.036022	GACCAGCAGGAGCAAAGACT	59.964	55.0	0.35	0.0	45.49	3.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
58	70	0.107831	CTCACCCACCTCGTTTCCAA	59.892	55.000	0.00	0.00	0.00	3.53
85	97	1.913419	TGTCCAAACATCCTACCCCTC	59.087	52.381	0.00	0.00	0.00	4.30
294	307	0.535328	CCAGGACCGAGCTCTATCGA	60.535	60.000	12.85	0.00	45.56	3.59
370	383	3.793144	GTTTCTGCGGCTCGGCTG	61.793	66.667	0.00	0.82	38.08	4.85
702	721	3.414700	GGCTGGTTCTGCGTCGTG	61.415	66.667	0.00	0.00	0.00	4.35
788	807	3.670991	GGCTCTTCGCTTACTATTCATCG	59.329	47.826	0.00	0.00	39.13	3.84
907	938	1.021390	GCTCATGGTGTGGAGGTTCG	61.021	60.000	0.00	0.00	0.00	3.95
913	944	1.521450	GGTGTGGAGGTTCGTCTCGA	61.521	60.000	0.00	0.00	34.74	4.04
973	1013	0.548682	ACAGAAGGCACAGGAGGGAT	60.549	55.000	0.00	0.00	0.00	3.85
1098	1144	1.073964	TCTACTTCCTCGACGACGTG	58.926	55.000	4.58	4.71	40.69	4.49
1119	1174	3.625897	CCTGGTGGTCCGCACAGA	61.626	66.667	17.64	0.00	36.30	3.41
1126	1181	2.179517	GTCCGCACAGAGTCCTCG	59.820	66.667	0.00	0.00	34.09	4.63
1185	1240	1.202268	CGTTACTCAGTCCCCGATGAC	60.202	57.143	0.00	0.00	35.43	3.06
1188	1243	1.573108	ACTCAGTCCCCGATGACATT	58.427	50.000	6.98	0.00	37.73	2.71
1270	1331	5.452255	ACCACCATCAATGAATTCAGCTAT	58.548	37.500	14.54	4.05	0.00	2.97
1273	1334	8.385491	ACCACCATCAATGAATTCAGCTATATA	58.615	33.333	14.54	0.00	0.00	0.86
1282	1343	6.889198	TGAATTCAGCTATATATACCCAGCC	58.111	40.000	3.38	0.00	34.49	4.85
1308	1369	1.985473	TCAGTTTGAGGCAGCACATT	58.015	45.000	0.00	0.00	0.00	2.71
1316	1377	4.094830	TGAGGCAGCACATTGATCATAT	57.905	40.909	0.00	0.00	0.00	1.78
1352	1421	9.605275	TCCATCAGTTCATTAAATAGAGTCTTG	57.395	33.333	0.00	0.00	0.00	3.02
1367	1436	5.241662	AGAGTCTTGGTCATTAGTCTTTGC	58.758	41.667	0.00	0.00	0.00	3.68
1368	1437	5.012561	AGAGTCTTGGTCATTAGTCTTTGCT	59.987	40.000	0.00	0.00	0.00	3.91
1369	1438	5.241662	AGTCTTGGTCATTAGTCTTTGCTC	58.758	41.667	0.00	0.00	0.00	4.26
1372	1441	3.942829	TGGTCATTAGTCTTTGCTCCTG	58.057	45.455	0.00	0.00	0.00	3.86
1402	1471	8.583765	GTCAATGTTTCTTTGTTGTTGTAGTTC	58.416	33.333	0.00	0.00	0.00	3.01
1403	1472	7.483375	TCAATGTTTCTTTGTTGTTGTAGTTCG	59.517	33.333	0.00	0.00	0.00	3.95
1407	1476	4.505808	TCTTTGTTGTTGTAGTTCGTGGA	58.494	39.130	0.00	0.00	0.00	4.02
1410	1479	3.135225	TGTTGTTGTAGTTCGTGGATGG	58.865	45.455	0.00	0.00	0.00	3.51
1411	1480	3.135994	GTTGTTGTAGTTCGTGGATGGT	58.864	45.455	0.00	0.00	0.00	3.55
1412	1481	3.478857	TGTTGTAGTTCGTGGATGGTT	57.521	42.857	0.00	0.00	0.00	3.67
1413	1482	3.135225	TGTTGTAGTTCGTGGATGGTTG	58.865	45.455	0.00	0.00	0.00	3.77
1414	1483	3.135994	GTTGTAGTTCGTGGATGGTTGT	58.864	45.455	0.00	0.00	0.00	3.32
1415	1484	3.478857	TGTAGTTCGTGGATGGTTGTT	57.521	42.857	0.00	0.00	0.00	2.83
1416	1485	3.135225	TGTAGTTCGTGGATGGTTGTTG	58.865	45.455	0.00	0.00	0.00	3.33
1418	1487	2.650322	AGTTCGTGGATGGTTGTTGTT	58.350	42.857	0.00	0.00	0.00	2.83
1421	1490	3.195471	TCGTGGATGGTTGTTGTTGTA	57.805	42.857	0.00	0.00	0.00	2.41
1422	1491	3.542648	TCGTGGATGGTTGTTGTTGTAA	58.457	40.909	0.00	0.00	0.00	2.41
1423	1492	3.562141	TCGTGGATGGTTGTTGTTGTAAG	59.438	43.478	0.00	0.00	0.00	2.34
1425	1494	3.067461	GTGGATGGTTGTTGTTGTAAGCA	59.933	43.478	0.00	0.00	38.47	3.91
1426	1495	3.894427	TGGATGGTTGTTGTTGTAAGCAT	59.106	39.130	0.00	0.00	44.79	3.79
1427	1496	5.048364	GTGGATGGTTGTTGTTGTAAGCATA	60.048	40.000	0.00	0.00	42.90	3.14
1429	1498	6.035843	GGATGGTTGTTGTTGTAAGCATATG	58.964	40.000	0.00	0.00	42.90	1.78
1441	1510	7.066887	TGTTGTAAGCATATGGTTGTAAGATGG	59.933	37.037	26.41	0.00	37.00	3.51
1446	1515	6.376248	AGCATATGGTTGTAAGATGGGAAAT	58.624	36.000	0.40	0.00	0.00	2.17
1473	1542	5.703978	TGTTCCATATCCAGTTTGTTGTG	57.296	39.130	0.00	0.00	0.00	3.33
1709	8175	2.289945	GCAGAGGTGTTTCATGTCTCCT	60.290	50.000	0.00	1.00	0.00	3.69
1739	8205	0.531090	AACACGTAAGAACCAGCGCA	60.531	50.000	11.47	0.00	43.62	6.09
1835	8650	5.707242	AGTCTTCGTCATTTGTCTACTGA	57.293	39.130	0.00	0.00	0.00	3.41
1858	8673	8.812147	TGATTATATAGGTGTTTTAGACTGCG	57.188	34.615	0.00	0.00	0.00	5.18
1872	8687	7.869016	TTTAGACTGCGTGCTTATATATGTC	57.131	36.000	0.00	0.00	0.00	3.06
1884	8699	7.855409	GTGCTTATATATGTCGTTTGAATTGCA	59.145	33.333	0.00	0.00	0.00	4.08
1902	8717	9.791820	TGAATTGCATATTGATTTCTGTTGTAG	57.208	29.630	0.00	0.00	0.00	2.74
1946	8765	0.748450	TCCGCCGTATTTCCAGTAGG	59.252	55.000	0.00	0.00	0.00	3.18
1958	8777	3.237268	TCCAGTAGGGCACACAATTTT	57.763	42.857	0.00	0.00	36.21	1.82
1970	8789	5.444481	GGCACACAATTTTTGATTGTATCGC	60.444	40.000	4.28	7.22	39.94	4.58
1974	8793	7.062022	CACACAATTTTTGATTGTATCGCATGA	59.938	33.333	0.00	0.00	39.94	3.07
1977	8796	8.810427	ACAATTTTTGATTGTATCGCATGATTC	58.190	29.630	0.00	0.00	40.12	2.52
1979	8798	7.974243	TTTTTGATTGTATCGCATGATTCTG	57.026	32.000	0.00	0.00	35.99	3.02
1987	8806	2.884827	TCGCATGATTCTGTCTGTCAG	58.115	47.619	0.00	0.00	44.85	3.51
2044	8863	2.431942	ACGTAAGAACCAGCGCCG	60.432	61.111	2.29	0.00	43.62	6.46
2065	8884	3.813724	CGGTTGATGAGATGATCTGCAAT	59.186	43.478	0.00	0.00	0.00	3.56
2066	8885	4.992951	CGGTTGATGAGATGATCTGCAATA	59.007	41.667	0.00	0.00	0.00	1.90
2107	8934	9.221933	CGTTCAGGTATAGAGATCAACTAGTAT	57.778	37.037	0.00	0.00	0.00	2.12
2205	9079	0.664767	GTCGTGTCTGTCTCCAGTGC	60.665	60.000	0.00	0.00	39.82	4.40
2210	9084	2.047844	CTGTCTCCAGTGCGGTGG	60.048	66.667	0.00	0.00	39.19	4.61
2224	9098	4.980805	GTGGTGCGCGGTGGAGAA	62.981	66.667	8.83	0.00	0.00	2.87
2259	9133	0.545171	AGCATGGTCATGAGGTGAGG	59.455	55.000	14.43	0.00	41.20	3.86
2260	9134	0.465097	GCATGGTCATGAGGTGAGGG	60.465	60.000	14.43	0.00	41.20	4.30

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
58	70	3.258722	AGGATGTTTGGACAATTGGGT	57.741	42.857	10.83	0.00	39.66	4.51
85	97	2.892425	GGCAGGACCGCGATTCAG	60.892	66.667	8.23	1.34	0.00	3.02
128	141	1.289530	AGAGAAGGTCTAGGTGGAGGG	59.710	57.143	0.00	0.00	31.71	4.30
414	427	4.020617	CGGAGGTTCAGCAGGGCA	62.021	66.667	0.00	0.00	0.00	5.36
606	625	1.216977	CGACAACCAGCGGTCCATA	59.783	57.895	0.69	0.00	33.12	2.74
658	677	0.834687	AAAGTCAGGTCCTGGGCGTA	60.835	55.000	19.11	0.00	31.51	4.42
702	721	3.960102	AGAAGAGGTCATCATCTGAGTCC	59.040	47.826	0.00	0.00	34.72	3.85
788	807	2.971915	CGACGGATCTTGTAAGCGATAC	59.028	50.000	0.00	0.00	34.92	2.24
885	916	1.077930	CCTCCACACCATGAGCAGG	60.078	63.158	0.00	0.00	0.00	4.85
994	1040	2.110967	CCTGCCCGCTCATCTTGTG	61.111	63.158	0.00	0.00	0.00	3.33
1119	1174	0.540830	ACTGGTTCTGCTCGAGGACT	60.541	55.000	15.58	0.00	29.60	3.85
1126	1181	2.611225	CAGGGATACTGGTTCTGCTC	57.389	55.000	0.00	0.00	43.70	4.26
1185	1240	0.302890	GGCAACGCTCGATCTCAATG	59.697	55.000	0.00	0.00	0.00	2.82
1188	1243	1.153765	CAGGCAACGCTCGATCTCA	60.154	57.895	0.00	0.00	46.39	3.27
1270	1331	1.621814	GAACCTGCGGCTGGGTATATA	59.378	52.381	26.65	0.00	35.09	0.86
1273	1334	2.257409	CTGAACCTGCGGCTGGGTAT	62.257	60.000	26.65	14.24	35.09	2.73
1282	1343	1.165907	TGCCTCAAACTGAACCTGCG	61.166	55.000	0.00	0.00	0.00	5.18
1352	1421	2.680339	GCAGGAGCAAAGACTAATGACC	59.320	50.000	0.00	0.00	41.58	4.02
1359	1428	0.036022	GACCAGCAGGAGCAAAGACT	59.964	55.000	0.35	0.00	45.49	3.24
1367	1436	2.787994	AGAAACATTGACCAGCAGGAG	58.212	47.619	0.35	0.00	38.69	3.69
1368	1437	2.957402	AGAAACATTGACCAGCAGGA	57.043	45.000	0.35	0.00	38.69	3.86
1369	1438	3.068590	ACAAAGAAACATTGACCAGCAGG	59.931	43.478	0.00	0.00	42.21	4.85
1372	1441	4.432712	ACAACAAAGAAACATTGACCAGC	58.567	39.130	0.00	0.00	0.00	4.85
1402	1471	3.851838	GCTTACAACAACAACCATCCACG	60.852	47.826	0.00	0.00	0.00	4.94
1403	1472	3.067461	TGCTTACAACAACAACCATCCAC	59.933	43.478	0.00	0.00	0.00	4.02
1407	1476	5.480073	ACCATATGCTTACAACAACAACCAT	59.520	36.000	0.00	0.00	0.00	3.55
1410	1479	6.212955	ACAACCATATGCTTACAACAACAAC	58.787	36.000	0.00	0.00	0.00	3.32
1411	1480	6.398234	ACAACCATATGCTTACAACAACAA	57.602	33.333	0.00	0.00	0.00	2.83
1412	1481	7.445707	TCTTACAACCATATGCTTACAACAACA	59.554	33.333	0.00	0.00	0.00	3.33
1413	1482	7.812648	TCTTACAACCATATGCTTACAACAAC	58.187	34.615	0.00	0.00	0.00	3.32
1414	1483	7.987750	TCTTACAACCATATGCTTACAACAA	57.012	32.000	0.00	0.00	0.00	2.83
1415	1484	7.066887	CCATCTTACAACCATATGCTTACAACA	59.933	37.037	0.00	0.00	0.00	3.33
1416	1485	7.417612	CCATCTTACAACCATATGCTTACAAC	58.582	38.462	0.00	0.00	0.00	3.32
1418	1487	6.061441	CCCATCTTACAACCATATGCTTACA	58.939	40.000	0.00	0.00	0.00	2.41
1421	1490	5.387113	TCCCATCTTACAACCATATGCTT	57.613	39.130	0.00	0.00	0.00	3.91
1422	1491	5.387113	TTCCCATCTTACAACCATATGCT	57.613	39.130	0.00	0.00	0.00	3.79
1423	1492	6.655078	ATTTCCCATCTTACAACCATATGC	57.345	37.500	0.00	0.00	0.00	3.14
1425	1494	8.837099	TTCAATTTCCCATCTTACAACCATAT	57.163	30.769	0.00	0.00	0.00	1.78
1426	1495	8.694540	CATTCAATTTCCCATCTTACAACCATA	58.305	33.333	0.00	0.00	0.00	2.74
1427	1496	7.180766	ACATTCAATTTCCCATCTTACAACCAT	59.819	33.333	0.00	0.00	0.00	3.55
1429	1498	6.935167	ACATTCAATTTCCCATCTTACAACC	58.065	36.000	0.00	0.00	0.00	3.77
1473	1542	5.351458	ACAGCCTTCAAATTGAGAACAAAC	58.649	37.500	0.00	0.00	39.54	2.93
1527	2269	5.921408	GGTAGCATGGAGTCTAAATAGTTCG	59.079	44.000	0.00	0.00	0.00	3.95
1709	8175	5.972382	GGTTCTTACGTGTTATGCAAACAAA	59.028	36.000	13.58	6.61	31.20	2.83
1813	8628	5.707242	TCAGTAGACAAATGACGAAGACT	57.293	39.130	0.00	0.00	0.00	3.24
1831	8646	9.765795	GCAGTCTAAAACACCTATATAATCAGT	57.234	33.333	0.00	0.00	0.00	3.41
1832	8647	8.916654	CGCAGTCTAAAACACCTATATAATCAG	58.083	37.037	0.00	0.00	0.00	2.90
1833	8648	8.418662	ACGCAGTCTAAAACACCTATATAATCA	58.581	33.333	0.00	0.00	29.74	2.57
1834	8649	8.700644	CACGCAGTCTAAAACACCTATATAATC	58.299	37.037	0.00	0.00	41.61	1.75
1835	8650	7.170998	GCACGCAGTCTAAAACACCTATATAAT	59.829	37.037	0.00	0.00	41.61	1.28
1858	8673	7.855409	TGCAATTCAAACGACATATATAAGCAC	59.145	33.333	0.00	0.00	0.00	4.40
1872	8687	8.176814	ACAGAAATCAATATGCAATTCAAACG	57.823	30.769	0.00	0.00	0.00	3.60
1946	8765	5.444481	GCGATACAATCAAAAATTGTGTGCC	60.444	40.000	12.42	0.00	41.73	5.01
1958	8777	6.018507	CAGACAGAATCATGCGATACAATCAA	60.019	38.462	0.00	0.00	0.00	2.57
1979	8798	0.320247	CACCTCTGCCACTGACAGAC	60.320	60.000	10.08	0.00	39.21	3.51
1987	8806	2.362077	ACATGAAAAACACCTCTGCCAC	59.638	45.455	0.00	0.00	0.00	5.01
2044	8863	6.228995	TCTATTGCAGATCATCTCATCAACC	58.771	40.000	0.00	0.00	0.00	3.77
2065	8884	6.884832	ACCTGAACGGACATCAAATATTCTA	58.115	36.000	0.00	0.00	36.31	2.10
2066	8885	5.745227	ACCTGAACGGACATCAAATATTCT	58.255	37.500	0.00	0.00	36.31	2.40
2107	8934	1.271934	CCGGCCACATTTGACAATCAA	59.728	47.619	2.24	0.00	34.03	2.57
2194	9068	2.842462	ACCACCGCACTGGAGACA	60.842	61.111	3.63	0.00	42.00	3.41
2210	9084	2.665185	AAGTTCTCCACCGCGCAC	60.665	61.111	8.75	0.00	0.00	5.34
2214	9088	2.359975	CCCCAAGTTCTCCACCGC	60.360	66.667	0.00	0.00	0.00	5.68
2215	9089	1.192146	TCTCCCCAAGTTCTCCACCG	61.192	60.000	0.00	0.00	0.00	4.94
2224	9098	2.685380	CTCCGCCTCTCCCCAAGT	60.685	66.667	0.00	0.00	0.00	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.