Multiple sequence alignment - TraesCS5B01G011600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G011600 chr5B 100.000 3197 0 0 1 3197 11502243 11505439 0.000000e+00 5904.0
1 TraesCS5B01G011600 chr5B 82.853 764 115 10 915 1671 11605576 11604822 0.000000e+00 671.0
2 TraesCS5B01G011600 chr5B 79.927 822 134 20 1063 1881 564218380 564219173 2.770000e-160 575.0
3 TraesCS5B01G011600 chr5B 84.790 572 84 3 1312 1881 564457180 564457750 3.580000e-159 571.0
4 TraesCS5B01G011600 chr5B 82.524 515 87 3 1355 1868 564079354 564079866 1.750000e-122 449.0
5 TraesCS5B01G011600 chr1A 93.092 2157 117 9 1 2151 99727897 99725767 0.000000e+00 3129.0
6 TraesCS5B01G011600 chr1A 93.761 545 26 6 2654 3197 99723146 99722609 0.000000e+00 811.0
7 TraesCS5B01G011600 chr1A 83.373 842 107 17 833 1665 99640947 99641764 0.000000e+00 749.0
8 TraesCS5B01G011600 chr1A 88.268 537 37 14 2656 3186 99715360 99714844 1.260000e-173 619.0
9 TraesCS5B01G011600 chr1A 89.474 513 18 17 2166 2643 99725783 99725272 1.630000e-172 616.0
10 TraesCS5B01G011600 chr1A 79.009 424 60 21 383 798 99751279 99750877 2.450000e-66 263.0
11 TraesCS5B01G011600 chr5D 94.111 1817 74 10 338 2148 11577479 11575690 0.000000e+00 2732.0
12 TraesCS5B01G011600 chr5D 88.702 1071 66 19 2166 3196 11575703 11574648 0.000000e+00 1256.0
13 TraesCS5B01G011600 chr5D 83.046 1103 167 9 1063 2148 459750353 459751452 0.000000e+00 983.0
14 TraesCS5B01G011600 chr5D 81.917 1106 173 17 1063 2148 459758480 459759578 0.000000e+00 909.0
15 TraesCS5B01G011600 chr5D 81.917 1106 173 17 1063 2148 459762941 459764039 0.000000e+00 909.0
16 TraesCS5B01G011600 chr5D 77.647 1360 225 41 831 2148 11614413 11613091 0.000000e+00 754.0
17 TraesCS5B01G011600 chr5D 88.991 545 42 12 2656 3196 11571791 11571261 0.000000e+00 658.0
18 TraesCS5B01G011600 chr5D 84.764 571 72 7 833 1403 11420775 11421330 2.790000e-155 558.0
19 TraesCS5B01G011600 chr5D 83.384 331 44 8 383 710 11630742 11630420 2.410000e-76 296.0
20 TraesCS5B01G011600 chr5D 78.889 450 67 19 383 825 11362612 11363040 2.430000e-71 279.0
21 TraesCS5B01G011600 chr5D 80.000 295 35 17 2201 2478 11613076 11612789 2.520000e-46 196.0
22 TraesCS5B01G011600 chr5D 100.000 41 0 0 408 448 11577528 11577488 3.420000e-10 76.8
23 TraesCS5B01G011600 chr5A 82.471 1044 152 17 1131 2148 579844286 579843248 0.000000e+00 885.0
24 TraesCS5B01G011600 chr5A 79.167 408 68 9 1752 2146 9469660 9469257 1.890000e-67 267.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G011600 chr5B 11502243 11505439 3196 False 5904.000000 5904 100.0000 1 3197 1 chr5B.!!$F1 3196
1 TraesCS5B01G011600 chr5B 11604822 11605576 754 True 671.000000 671 82.8530 915 1671 1 chr5B.!!$R1 756
2 TraesCS5B01G011600 chr5B 564218380 564219173 793 False 575.000000 575 79.9270 1063 1881 1 chr5B.!!$F3 818
3 TraesCS5B01G011600 chr5B 564457180 564457750 570 False 571.000000 571 84.7900 1312 1881 1 chr5B.!!$F4 569
4 TraesCS5B01G011600 chr5B 564079354 564079866 512 False 449.000000 449 82.5240 1355 1868 1 chr5B.!!$F2 513
5 TraesCS5B01G011600 chr1A 99722609 99727897 5288 True 1518.666667 3129 92.1090 1 3197 3 chr1A.!!$R3 3196
6 TraesCS5B01G011600 chr1A 99640947 99641764 817 False 749.000000 749 83.3730 833 1665 1 chr1A.!!$F1 832
7 TraesCS5B01G011600 chr1A 99714844 99715360 516 True 619.000000 619 88.2680 2656 3186 1 chr1A.!!$R1 530
8 TraesCS5B01G011600 chr5D 11571261 11577528 6267 True 1180.700000 2732 92.9510 338 3196 4 chr5D.!!$R2 2858
9 TraesCS5B01G011600 chr5D 459750353 459751452 1099 False 983.000000 983 83.0460 1063 2148 1 chr5D.!!$F3 1085
10 TraesCS5B01G011600 chr5D 459758480 459764039 5559 False 909.000000 909 81.9170 1063 2148 2 chr5D.!!$F4 1085
11 TraesCS5B01G011600 chr5D 11420775 11421330 555 False 558.000000 558 84.7640 833 1403 1 chr5D.!!$F2 570
12 TraesCS5B01G011600 chr5D 11612789 11614413 1624 True 475.000000 754 78.8235 831 2478 2 chr5D.!!$R3 1647
13 TraesCS5B01G011600 chr5A 579843248 579844286 1038 True 885.000000 885 82.4710 1131 2148 1 chr5A.!!$R2 1017

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 993 0.104120 CCCTTCACTCACACGTCACA 59.896 55.0 0.0 0.0 0.0 3.58 F
1857 6384 0.396811 CCGGTTCCAAGTCTTCAGGT 59.603 55.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1898 6431 0.392461 GCTGCCGGGTCATCTTGTAA 60.392 55.000 2.18 0.0 0.0 2.41 R
2860 12977 1.971695 GCTGCCAAACCCTACGCTT 60.972 57.895 0.00 0.0 0.0 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.399949 AGGTTGGTCAGGGTGACTCA 60.400 55.000 6.99 1.44 46.19 3.41
54 55 2.879026 GGTCAGGGTGACTCAGAAAAAC 59.121 50.000 6.99 0.00 46.19 2.43
60 61 3.243975 GGGTGACTCAGAAAAACGACCTA 60.244 47.826 0.00 0.00 0.00 3.08
64 65 5.927115 GTGACTCAGAAAAACGACCTAGAAT 59.073 40.000 0.00 0.00 0.00 2.40
67 68 7.176165 TGACTCAGAAAAACGACCTAGAATCTA 59.824 37.037 0.00 0.00 0.00 1.98
81 82 0.386113 AATCTAGAGTCGAAGCGGGC 59.614 55.000 0.00 0.00 0.00 6.13
130 131 0.392595 GTAAGGGGCGAGGGAAACAG 60.393 60.000 0.00 0.00 0.00 3.16
137 138 1.966451 CGAGGGAAACAGGTGGCAC 60.966 63.158 9.70 9.70 0.00 5.01
138 139 1.966451 GAGGGAAACAGGTGGCACG 60.966 63.158 12.17 0.75 0.00 5.34
146 147 0.107993 ACAGGTGGCACGAGATCATG 60.108 55.000 12.17 0.00 0.00 3.07
147 148 0.812811 CAGGTGGCACGAGATCATGG 60.813 60.000 12.17 0.00 0.00 3.66
157 158 0.179000 GAGATCATGGAACCACCGCT 59.821 55.000 0.00 0.00 42.61 5.52
158 159 0.179000 AGATCATGGAACCACCGCTC 59.821 55.000 0.00 0.00 42.61 5.03
169 170 3.134574 ACCACCGCTCAAAATAAGTCA 57.865 42.857 0.00 0.00 0.00 3.41
172 173 3.242413 CCACCGCTCAAAATAAGTCATCG 60.242 47.826 0.00 0.00 0.00 3.84
179 180 3.616821 TCAAAATAAGTCATCGCCAGACG 59.383 43.478 0.00 0.00 40.84 4.18
195 196 3.390135 CAGACGAAACTAGAGTTGCCAA 58.610 45.455 0.00 0.00 38.44 4.52
209 210 0.684153 TGCCAAGGAAAGCATAGGGC 60.684 55.000 0.00 0.00 45.30 5.19
239 240 5.064325 CCCTACGTTAACTATTGCCTTGTTC 59.936 44.000 3.71 0.00 0.00 3.18
249 250 2.185004 TGCCTTGTTCTCTTAGTGCC 57.815 50.000 0.00 0.00 0.00 5.01
273 274 7.576236 CCTTTGATTAGCGATTTACCACATAG 58.424 38.462 0.00 0.00 0.00 2.23
526 533 0.179059 TGTGTTGCGTCATGTGAGGT 60.179 50.000 4.83 0.00 32.91 3.85
527 534 0.944386 GTGTTGCGTCATGTGAGGTT 59.056 50.000 4.83 0.00 32.91 3.50
528 535 2.139917 GTGTTGCGTCATGTGAGGTTA 58.860 47.619 4.83 0.00 32.91 2.85
529 536 2.546368 GTGTTGCGTCATGTGAGGTTAA 59.454 45.455 4.83 0.00 32.91 2.01
609 620 5.419155 CCAGGATCTATAGCGGAGTATTTCA 59.581 44.000 0.00 0.00 0.00 2.69
621 632 7.331791 AGCGGAGTATTTCAAGTATTCTTCTT 58.668 34.615 0.00 0.00 0.00 2.52
635 646 7.224297 AGTATTCTTCTTTAGTTTCACTGCCA 58.776 34.615 0.00 0.00 0.00 4.92
645 656 3.057315 AGTTTCACTGCCATCGAATTTGG 60.057 43.478 0.00 0.00 37.31 3.28
729 740 7.574021 TCTGTATATCAAGGGCATAAGGAAT 57.426 36.000 0.00 0.00 0.00 3.01
753 764 5.781210 TGTATGTGGTCATGCAAAAAGAA 57.219 34.783 0.00 0.00 42.03 2.52
761 772 5.185635 TGGTCATGCAAAAAGAAATCTAGGG 59.814 40.000 0.00 0.00 0.00 3.53
912 923 2.417719 GCACAGTTCTCACTTGGGTAG 58.582 52.381 0.00 0.00 0.00 3.18
957 970 1.061546 AAAACCGAAGCTAGGGGTCA 58.938 50.000 12.17 0.00 32.47 4.02
975 988 1.001974 TCAATCCCCTTCACTCACACG 59.998 52.381 0.00 0.00 0.00 4.49
976 989 1.056660 AATCCCCTTCACTCACACGT 58.943 50.000 0.00 0.00 0.00 4.49
977 990 0.608640 ATCCCCTTCACTCACACGTC 59.391 55.000 0.00 0.00 0.00 4.34
978 991 0.757561 TCCCCTTCACTCACACGTCA 60.758 55.000 0.00 0.00 0.00 4.35
979 992 0.600255 CCCCTTCACTCACACGTCAC 60.600 60.000 0.00 0.00 0.00 3.67
980 993 0.104120 CCCTTCACTCACACGTCACA 59.896 55.000 0.00 0.00 0.00 3.58
981 994 1.209128 CCTTCACTCACACGTCACAC 58.791 55.000 0.00 0.00 0.00 3.82
985 998 1.760875 ACTCACACGTCACACCCCT 60.761 57.895 0.00 0.00 0.00 4.79
1095 1122 1.108132 AGACCTTCTCCGCCGTATCC 61.108 60.000 0.00 0.00 0.00 2.59
1194 1229 4.155733 CGTCCCCGCTGCCATACA 62.156 66.667 0.00 0.00 0.00 2.29
1639 1686 4.047059 GTTCTGGGCCGTCGACGA 62.047 66.667 37.65 17.84 43.02 4.20
1857 6384 0.396811 CCGGTTCCAAGTCTTCAGGT 59.603 55.000 0.00 0.00 0.00 4.00
1955 6488 1.222936 CTGCTCCAAGGCCTTCGAT 59.777 57.895 17.29 0.00 0.00 3.59
2102 6644 3.132139 CAGCGCTGCCTGCAATCT 61.132 61.111 26.68 0.00 43.06 2.40
2123 6666 2.603473 CCACCCTCGGACACCTCA 60.603 66.667 0.00 0.00 0.00 3.86
2174 6717 3.278668 TTTTTGAGAACGGTACCACCA 57.721 42.857 13.54 0.00 38.47 4.17
2175 6718 3.495434 TTTTGAGAACGGTACCACCAT 57.505 42.857 13.54 0.00 38.47 3.55
2176 6719 3.495434 TTTGAGAACGGTACCACCATT 57.505 42.857 13.54 0.00 38.47 3.16
2177 6720 4.620589 TTTGAGAACGGTACCACCATTA 57.379 40.909 13.54 0.00 38.47 1.90
2178 6721 4.620589 TTGAGAACGGTACCACCATTAA 57.379 40.909 13.54 0.00 38.47 1.40
2179 6722 4.829872 TGAGAACGGTACCACCATTAAT 57.170 40.909 13.54 0.00 38.47 1.40
2187 6731 6.424883 ACGGTACCACCATTAATTAATCCAA 58.575 36.000 13.54 0.00 38.47 3.53
2199 6743 2.684001 TAATCCAACTACCCAGCACG 57.316 50.000 0.00 0.00 0.00 5.34
2299 6848 3.851403 CAGTGTTTCTTTGTTGTGGTTCG 59.149 43.478 0.00 0.00 0.00 3.95
2403 6957 5.705441 AGGCTGTTTTCGAACTCATTTCATA 59.295 36.000 0.00 0.00 33.24 2.15
2585 7180 9.665719 TGTAAGACTGCAACTGAATATTTCATA 57.334 29.630 0.00 0.00 39.30 2.15
2608 7203 3.981071 TGTTCAGGTGTAGGGATCAAG 57.019 47.619 0.00 0.00 0.00 3.02
2614 7209 6.027025 TCAGGTGTAGGGATCAAGTAGTAT 57.973 41.667 0.00 0.00 0.00 2.12
2621 7216 7.707035 GTGTAGGGATCAAGTAGTATTGAACTG 59.293 40.741 0.00 0.00 42.21 3.16
2688 9400 5.310409 TCCTTCTTCACTTGTCAGGAATT 57.690 39.130 0.00 0.00 0.00 2.17
2716 9428 3.068590 CCATTTGTGCCACTGAAGAAACT 59.931 43.478 0.00 0.00 0.00 2.66
2815 9528 1.728971 CGATCTCGCAAAAGCTTCTGT 59.271 47.619 0.00 0.00 0.00 3.41
2819 9532 1.100463 TCGCAAAAGCTTCTGTGCCA 61.100 50.000 18.69 8.09 33.33 4.92
2842 9559 4.571372 TGACCCGTTGTATTTTGGAAAC 57.429 40.909 0.00 0.00 0.00 2.78
2860 12977 4.037923 GGAAACTCAGATTGCAAAGAACCA 59.962 41.667 1.71 0.00 0.00 3.67
2937 13054 0.542467 TAGTGGCCGTACTGTTGGGA 60.542 55.000 5.99 0.00 32.19 4.37
2941 13058 0.808755 GGCCGTACTGTTGGGATTTG 59.191 55.000 0.00 0.00 0.00 2.32
2944 13061 2.095415 GCCGTACTGTTGGGATTTGTTC 60.095 50.000 1.49 0.00 0.00 3.18
2948 13065 5.221165 CCGTACTGTTGGGATTTGTTCTTTT 60.221 40.000 0.00 0.00 0.00 2.27
2949 13066 6.270064 CGTACTGTTGGGATTTGTTCTTTTT 58.730 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.946009 CCAACCTAATTCCCTTGAAACTCTAA 59.054 38.462 0.00 0.00 33.32 2.10
18 19 3.356290 CCTGACCAACCTAATTCCCTTG 58.644 50.000 0.00 0.00 0.00 3.61
47 48 7.414319 CGACTCTAGATTCTAGGTCGTTTTTCT 60.414 40.741 31.12 8.46 40.69 2.52
54 55 4.084223 GCTTCGACTCTAGATTCTAGGTCG 60.084 50.000 32.25 32.25 44.89 4.79
60 61 1.950909 CCCGCTTCGACTCTAGATTCT 59.049 52.381 8.31 0.00 0.00 2.40
64 65 1.077644 AGCCCGCTTCGACTCTAGA 60.078 57.895 0.00 0.00 0.00 2.43
67 68 3.764466 CCAGCCCGCTTCGACTCT 61.764 66.667 0.00 0.00 0.00 3.24
81 82 1.672356 CTTCGCAACTCCCACCCAG 60.672 63.158 0.00 0.00 0.00 4.45
130 131 0.107703 TTCCATGATCTCGTGCCACC 60.108 55.000 0.00 0.00 0.00 4.61
137 138 1.154205 GCGGTGGTTCCATGATCTCG 61.154 60.000 0.00 0.00 35.57 4.04
138 139 0.179000 AGCGGTGGTTCCATGATCTC 59.821 55.000 0.00 0.00 35.57 2.75
146 147 2.817844 ACTTATTTTGAGCGGTGGTTCC 59.182 45.455 0.00 0.00 0.00 3.62
147 148 3.500680 TGACTTATTTTGAGCGGTGGTTC 59.499 43.478 0.00 0.00 0.00 3.62
157 158 3.616821 CGTCTGGCGATGACTTATTTTGA 59.383 43.478 0.00 0.00 44.77 2.69
158 159 3.616821 TCGTCTGGCGATGACTTATTTTG 59.383 43.478 0.00 0.00 45.68 2.44
172 173 1.727335 GCAACTCTAGTTTCGTCTGGC 59.273 52.381 0.00 0.00 35.83 4.85
179 180 4.320567 GCTTTCCTTGGCAACTCTAGTTTC 60.321 45.833 0.00 0.00 35.83 2.78
184 185 2.949177 TGCTTTCCTTGGCAACTCTA 57.051 45.000 0.00 0.00 35.40 2.43
185 186 2.299326 ATGCTTTCCTTGGCAACTCT 57.701 45.000 0.00 0.00 41.90 3.24
195 196 0.624500 TCCTGGCCCTATGCTTTCCT 60.625 55.000 0.00 0.00 40.92 3.36
209 210 4.690122 CAATAGTTAACGTAGGGTCCTGG 58.310 47.826 0.00 0.00 0.00 4.45
239 240 4.433615 TCGCTAATCAAAGGCACTAAGAG 58.566 43.478 0.00 0.00 38.49 2.85
249 250 7.576236 CCTATGTGGTAAATCGCTAATCAAAG 58.424 38.462 0.00 0.00 0.00 2.77
273 274 4.589908 ACATCTTGACCCTCAACATAACC 58.410 43.478 0.00 0.00 32.21 2.85
323 324 2.366972 ATGGGACGGGAGGGGAAG 60.367 66.667 0.00 0.00 0.00 3.46
455 460 6.406624 GCAACACCTAGCTAGTAGATTTGGTA 60.407 42.308 19.31 0.00 0.00 3.25
526 533 9.551339 TCAACTCCTAGGTTTACCTCTAATTAA 57.449 33.333 9.08 0.00 44.77 1.40
527 534 9.725206 ATCAACTCCTAGGTTTACCTCTAATTA 57.275 33.333 9.08 0.00 44.77 1.40
528 535 8.625467 ATCAACTCCTAGGTTTACCTCTAATT 57.375 34.615 9.08 0.00 44.77 1.40
529 536 9.369672 CTATCAACTCCTAGGTTTACCTCTAAT 57.630 37.037 9.08 0.00 44.77 1.73
694 705 6.017934 CCCTTGATATACAGATTTTCACCACG 60.018 42.308 0.00 0.00 0.00 4.94
729 740 7.459795 TTCTTTTTGCATGACCACATACATA 57.540 32.000 0.00 0.00 35.09 2.29
753 764 1.439543 CCCCAAGCTAGCCCTAGATT 58.560 55.000 12.13 3.36 41.88 2.40
761 772 2.511403 GGTAGGCCCCAAGCTAGC 59.489 66.667 6.62 6.62 43.05 3.42
866 877 1.812571 CAGTTTGGTCCCTGGAAATCG 59.187 52.381 0.00 0.00 0.00 3.34
937 948 1.422402 TGACCCCTAGCTTCGGTTTTT 59.578 47.619 0.00 0.00 0.00 1.94
957 970 1.002087 GACGTGTGAGTGAAGGGGATT 59.998 52.381 0.00 0.00 0.00 3.01
971 984 0.759436 AAGAGAGGGGTGTGACGTGT 60.759 55.000 0.00 0.00 0.00 4.49
975 988 1.420138 TGGAAAAGAGAGGGGTGTGAC 59.580 52.381 0.00 0.00 0.00 3.67
976 989 1.699634 CTGGAAAAGAGAGGGGTGTGA 59.300 52.381 0.00 0.00 0.00 3.58
977 990 1.421646 ACTGGAAAAGAGAGGGGTGTG 59.578 52.381 0.00 0.00 0.00 3.82
978 991 1.700186 GACTGGAAAAGAGAGGGGTGT 59.300 52.381 0.00 0.00 0.00 4.16
979 992 1.003696 GGACTGGAAAAGAGAGGGGTG 59.996 57.143 0.00 0.00 0.00 4.61
980 993 1.363246 GGACTGGAAAAGAGAGGGGT 58.637 55.000 0.00 0.00 0.00 4.95
981 994 1.362224 TGGACTGGAAAAGAGAGGGG 58.638 55.000 0.00 0.00 0.00 4.79
985 998 4.141274 TGGACAATTGGACTGGAAAAGAGA 60.141 41.667 10.83 0.00 0.00 3.10
1095 1122 1.591703 TGCACGTTAGCAGGAGGAG 59.408 57.895 0.00 0.00 40.11 3.69
1194 1229 3.771160 GGTGGACGGCCTGACGAT 61.771 66.667 9.82 0.00 37.61 3.73
1388 1423 2.916052 GCATACGCGATCCGGGAGA 61.916 63.158 15.93 0.00 42.31 3.71
1639 1686 2.175202 AGCAGAAGAGGTCGTCATCTT 58.825 47.619 9.24 9.24 45.47 2.40
1726 6253 1.006688 CCGTGTGTCATGTCCGTCA 60.007 57.895 0.00 0.00 0.00 4.35
1857 6384 0.984230 CCCTCCTGTGGCTTCTGTAA 59.016 55.000 0.00 0.00 0.00 2.41
1898 6431 0.392461 GCTGCCGGGTCATCTTGTAA 60.392 55.000 2.18 0.00 0.00 2.41
1955 6488 3.707458 TTGCCGGCGTGTCCCATA 61.707 61.111 23.90 0.00 0.00 2.74
2098 6640 1.306141 TCCGAGGGTGGAGCAGATT 60.306 57.895 0.00 0.00 33.05 2.40
2102 6644 3.311110 GTGTCCGAGGGTGGAGCA 61.311 66.667 0.00 0.00 39.14 4.26
2123 6666 0.891904 GGTGGTACCAAATGCACGGT 60.892 55.000 18.31 9.11 38.42 4.83
2154 6697 3.278668 TGGTGGTACCGTTCTCAAAAA 57.721 42.857 7.57 0.00 42.58 1.94
2155 6698 3.495434 ATGGTGGTACCGTTCTCAAAA 57.505 42.857 7.57 0.00 42.58 2.44
2156 6699 3.495434 AATGGTGGTACCGTTCTCAAA 57.505 42.857 7.57 0.00 43.73 2.69
2157 6700 4.620589 TTAATGGTGGTACCGTTCTCAA 57.379 40.909 7.57 0.00 43.73 3.02
2158 6701 4.829872 ATTAATGGTGGTACCGTTCTCA 57.170 40.909 7.57 1.32 43.73 3.27
2159 6702 7.041576 GGATTAATTAATGGTGGTACCGTTCTC 60.042 40.741 15.39 0.00 43.73 2.87
2160 6703 6.769341 GGATTAATTAATGGTGGTACCGTTCT 59.231 38.462 15.39 0.00 43.73 3.01
2161 6704 6.543100 TGGATTAATTAATGGTGGTACCGTTC 59.457 38.462 15.39 0.06 43.73 3.95
2163 6706 6.003859 TGGATTAATTAATGGTGGTACCGT 57.996 37.500 15.39 0.00 42.58 4.83
2164 6707 6.544564 AGTTGGATTAATTAATGGTGGTACCG 59.455 38.462 15.39 0.00 42.58 4.02
2165 6708 7.891498 AGTTGGATTAATTAATGGTGGTACC 57.109 36.000 15.39 4.43 39.22 3.34
2166 6709 8.843262 GGTAGTTGGATTAATTAATGGTGGTAC 58.157 37.037 15.39 10.45 0.00 3.34
2167 6710 8.000127 GGGTAGTTGGATTAATTAATGGTGGTA 59.000 37.037 15.39 0.00 0.00 3.25
2168 6711 6.837048 GGGTAGTTGGATTAATTAATGGTGGT 59.163 38.462 15.39 0.73 0.00 4.16
2169 6712 6.836527 TGGGTAGTTGGATTAATTAATGGTGG 59.163 38.462 15.39 0.00 0.00 4.61
2170 6713 7.470009 GCTGGGTAGTTGGATTAATTAATGGTG 60.470 40.741 15.39 0.00 0.00 4.17
2171 6714 6.549736 GCTGGGTAGTTGGATTAATTAATGGT 59.450 38.462 15.39 0.00 0.00 3.55
2172 6715 6.549364 TGCTGGGTAGTTGGATTAATTAATGG 59.451 38.462 15.39 0.00 0.00 3.16
2173 6716 7.425606 GTGCTGGGTAGTTGGATTAATTAATG 58.574 38.462 15.39 0.00 0.00 1.90
2174 6717 6.262273 CGTGCTGGGTAGTTGGATTAATTAAT 59.738 38.462 10.51 10.51 0.00 1.40
2175 6718 5.587043 CGTGCTGGGTAGTTGGATTAATTAA 59.413 40.000 0.00 0.00 0.00 1.40
2176 6719 5.104859 TCGTGCTGGGTAGTTGGATTAATTA 60.105 40.000 0.00 0.00 0.00 1.40
2177 6720 3.945285 CGTGCTGGGTAGTTGGATTAATT 59.055 43.478 0.00 0.00 0.00 1.40
2178 6721 3.199071 TCGTGCTGGGTAGTTGGATTAAT 59.801 43.478 0.00 0.00 0.00 1.40
2179 6722 2.568062 TCGTGCTGGGTAGTTGGATTAA 59.432 45.455 0.00 0.00 0.00 1.40
2187 6731 0.830444 TGAACCTCGTGCTGGGTAGT 60.830 55.000 0.00 0.00 35.09 2.73
2199 6743 1.239347 GGTGCCTCAAACTGAACCTC 58.761 55.000 0.00 0.00 0.00 3.85
2299 6848 3.825328 ACTGGATATGCAGTTTCCCATC 58.175 45.455 22.81 0.00 0.00 3.51
2364 6918 3.490348 ACAGCCTGCAAATTAACTGACT 58.510 40.909 0.00 0.00 0.00 3.41
2418 6972 3.118592 AGCTGGTAGCAGTCCAAATAGTC 60.119 47.826 22.21 2.63 45.56 2.59
2426 6980 2.068834 TAGGTAGCTGGTAGCAGTCC 57.931 55.000 22.21 19.88 45.56 3.85
2585 7180 5.667626 ACTTGATCCCTACACCTGAACATAT 59.332 40.000 0.00 0.00 0.00 1.78
2587 7182 3.846588 ACTTGATCCCTACACCTGAACAT 59.153 43.478 0.00 0.00 0.00 2.71
2608 7203 8.648557 TCAACATATCAGCAGTTCAATACTAC 57.351 34.615 0.00 0.00 34.56 2.73
2614 7209 6.233434 AGTCTTCAACATATCAGCAGTTCAA 58.767 36.000 0.00 0.00 0.00 2.69
2651 7246 9.432982 AGTGAAGAAGGATCATCTATAAAGACT 57.567 33.333 0.00 0.00 33.57 3.24
2693 9405 2.655090 TCTTCAGTGGCACAAATGGA 57.345 45.000 21.41 3.08 44.16 3.41
2815 9528 2.208132 AATACAACGGGTCAATGGCA 57.792 45.000 0.00 0.00 0.00 4.92
2819 9532 5.303333 AGTTTCCAAAATACAACGGGTCAAT 59.697 36.000 0.00 0.00 0.00 2.57
2842 9559 3.572584 GCTTGGTTCTTTGCAATCTGAG 58.427 45.455 0.00 0.00 0.00 3.35
2860 12977 1.971695 GCTGCCAAACCCTACGCTT 60.972 57.895 0.00 0.00 0.00 4.68
3022 13144 8.333235 TCCCATCTAACCTTATTACAACAACAT 58.667 33.333 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.