Multiple sequence alignment - TraesCS5B01G009900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G009900 chr5B 100.000 2870 0 0 1 2870 9538104 9540973 0.000000e+00 5301.0
1 TraesCS5B01G009900 chr5B 91.093 247 22 0 1634 1880 10338699 10338453 4.580000e-88 335.0
2 TraesCS5B01G009900 chr5D 91.814 1698 100 10 201 1880 9547244 9548920 0.000000e+00 2329.0
3 TraesCS5B01G009900 chr5D 92.110 583 45 1 1982 2564 443181296 443181877 0.000000e+00 821.0
4 TraesCS5B01G009900 chr5D 83.762 622 95 5 161 780 485603951 485603334 4.120000e-163 584.0
5 TraesCS5B01G009900 chr5D 95.169 207 6 1 1 203 9531949 9532155 9.920000e-85 324.0
6 TraesCS5B01G009900 chr5A 92.486 1078 61 9 818 1880 7679612 7680684 0.000000e+00 1524.0
7 TraesCS5B01G009900 chr5A 91.892 74 5 1 4 76 7679422 7679495 5.060000e-18 102.0
8 TraesCS5B01G009900 chr6D 93.379 589 38 1 1982 2570 377219862 377219275 0.000000e+00 870.0
9 TraesCS5B01G009900 chr6D 83.359 643 101 5 161 801 121159024 121158386 8.860000e-165 590.0
10 TraesCS5B01G009900 chr4D 92.321 586 45 0 1979 2564 374732489 374733074 0.000000e+00 833.0
11 TraesCS5B01G009900 chr4D 85.294 68 4 6 1463 1529 453516732 453516670 6.640000e-07 65.8
12 TraesCS5B01G009900 chr3A 91.993 587 45 1 1981 2567 219155003 219155587 0.000000e+00 822.0
13 TraesCS5B01G009900 chr7D 90.956 586 53 0 1985 2570 24979350 24978765 0.000000e+00 789.0
14 TraesCS5B01G009900 chr7D 82.716 648 105 6 161 805 80327074 80326431 1.150000e-158 569.0
15 TraesCS5B01G009900 chr4A 89.116 588 61 2 1978 2564 13158656 13159241 0.000000e+00 728.0
16 TraesCS5B01G009900 chr4A 88.060 335 27 5 1980 2314 516445458 516445137 4.490000e-103 385.0
17 TraesCS5B01G009900 chr7A 84.491 619 90 5 161 777 670685987 670686601 8.790000e-170 606.0
18 TraesCS5B01G009900 chr7A 84.006 619 92 6 161 777 6799075 6799688 3.190000e-164 588.0
19 TraesCS5B01G009900 chr1D 84.405 622 90 6 161 780 375353325 375352709 3.160000e-169 604.0
20 TraesCS5B01G009900 chr1D 82.556 665 103 10 143 800 418405473 418404815 8.920000e-160 573.0
21 TraesCS5B01G009900 chr3B 83.282 646 97 7 161 805 820797900 820798535 4.120000e-163 584.0
22 TraesCS5B01G009900 chr3B 85.085 295 40 3 1978 2271 194649761 194649470 6.010000e-77 298.0
23 TraesCS5B01G009900 chr3B 88.732 71 8 0 1910 1980 19418861 19418791 1.420000e-13 87.9
24 TraesCS5B01G009900 chr1A 83.520 625 95 6 161 782 7841988 7842607 6.900000e-161 577.0
25 TraesCS5B01G009900 chr7B 83.135 587 95 1 1981 2567 538343278 538343860 1.510000e-147 532.0
26 TraesCS5B01G009900 chr1B 78.934 394 62 7 2177 2570 537417895 537417523 6.140000e-62 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G009900 chr5B 9538104 9540973 2869 False 5301 5301 100.000 1 2870 1 chr5B.!!$F1 2869
1 TraesCS5B01G009900 chr5D 9547244 9548920 1676 False 2329 2329 91.814 201 1880 1 chr5D.!!$F2 1679
2 TraesCS5B01G009900 chr5D 443181296 443181877 581 False 821 821 92.110 1982 2564 1 chr5D.!!$F3 582
3 TraesCS5B01G009900 chr5D 485603334 485603951 617 True 584 584 83.762 161 780 1 chr5D.!!$R1 619
4 TraesCS5B01G009900 chr5A 7679422 7680684 1262 False 813 1524 92.189 4 1880 2 chr5A.!!$F1 1876
5 TraesCS5B01G009900 chr6D 377219275 377219862 587 True 870 870 93.379 1982 2570 1 chr6D.!!$R2 588
6 TraesCS5B01G009900 chr6D 121158386 121159024 638 True 590 590 83.359 161 801 1 chr6D.!!$R1 640
7 TraesCS5B01G009900 chr4D 374732489 374733074 585 False 833 833 92.321 1979 2564 1 chr4D.!!$F1 585
8 TraesCS5B01G009900 chr3A 219155003 219155587 584 False 822 822 91.993 1981 2567 1 chr3A.!!$F1 586
9 TraesCS5B01G009900 chr7D 24978765 24979350 585 True 789 789 90.956 1985 2570 1 chr7D.!!$R1 585
10 TraesCS5B01G009900 chr7D 80326431 80327074 643 True 569 569 82.716 161 805 1 chr7D.!!$R2 644
11 TraesCS5B01G009900 chr4A 13158656 13159241 585 False 728 728 89.116 1978 2564 1 chr4A.!!$F1 586
12 TraesCS5B01G009900 chr7A 670685987 670686601 614 False 606 606 84.491 161 777 1 chr7A.!!$F2 616
13 TraesCS5B01G009900 chr7A 6799075 6799688 613 False 588 588 84.006 161 777 1 chr7A.!!$F1 616
14 TraesCS5B01G009900 chr1D 375352709 375353325 616 True 604 604 84.405 161 780 1 chr1D.!!$R1 619
15 TraesCS5B01G009900 chr1D 418404815 418405473 658 True 573 573 82.556 143 800 1 chr1D.!!$R2 657
16 TraesCS5B01G009900 chr3B 820797900 820798535 635 False 584 584 83.282 161 805 1 chr3B.!!$F1 644
17 TraesCS5B01G009900 chr1A 7841988 7842607 619 False 577 577 83.520 161 782 1 chr1A.!!$F1 621
18 TraesCS5B01G009900 chr7B 538343278 538343860 582 False 532 532 83.135 1981 2567 1 chr7B.!!$F1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 193 0.037232 CAGACAGTTTCCCTCGTCCC 60.037 60.0 0.0 0.0 0.0 4.46 F
137 195 0.037232 GACAGTTTCCCTCGTCCCTG 60.037 60.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1168 1251 0.095935 CGATCGACGACTACGGTGTT 59.904 55.0 10.26 0.0 45.77 3.32 R
1934 2029 0.307760 CGTCTCGGCAAAGCAAACTT 59.692 50.0 0.00 0.0 37.90 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.010023 GTGTCTCGTGATGAAATTAAGTTGTC 58.990 38.462 0.00 0.00 0.00 3.18
48 49 6.929049 TGTCTCGTGATGAAATTAAGTTGTCT 59.071 34.615 0.00 0.00 0.00 3.41
79 80 2.950309 CAATTCAGAAGCATCTCCCTGG 59.050 50.000 0.00 0.00 32.03 4.45
80 81 0.254178 TTCAGAAGCATCTCCCTGGC 59.746 55.000 0.00 0.00 32.03 4.85
82 83 1.687146 AGAAGCATCTCCCTGGCGA 60.687 57.895 0.00 0.00 0.00 5.54
84 85 0.813210 GAAGCATCTCCCTGGCGAAG 60.813 60.000 0.00 0.00 0.00 3.79
86 87 1.817099 GCATCTCCCTGGCGAAGTG 60.817 63.158 0.00 0.00 0.00 3.16
88 89 0.460987 CATCTCCCTGGCGAAGTGTC 60.461 60.000 0.00 0.00 0.00 3.67
103 161 1.405821 AGTGTCGAGTATGCCAGCTAC 59.594 52.381 0.00 0.00 0.00 3.58
104 162 1.134367 GTGTCGAGTATGCCAGCTACA 59.866 52.381 0.00 0.00 0.00 2.74
116 174 3.753272 TGCCAGCTACAGAATTTGAGTTC 59.247 43.478 0.00 0.00 0.00 3.01
122 180 5.931146 AGCTACAGAATTTGAGTTCAGACAG 59.069 40.000 0.00 0.00 0.00 3.51
123 181 5.698545 GCTACAGAATTTGAGTTCAGACAGT 59.301 40.000 0.00 0.00 0.00 3.55
124 182 6.203723 GCTACAGAATTTGAGTTCAGACAGTT 59.796 38.462 0.00 0.00 0.00 3.16
125 183 7.254932 GCTACAGAATTTGAGTTCAGACAGTTT 60.255 37.037 0.00 0.00 0.00 2.66
126 184 7.020914 ACAGAATTTGAGTTCAGACAGTTTC 57.979 36.000 0.00 0.00 0.00 2.78
127 185 6.038714 ACAGAATTTGAGTTCAGACAGTTTCC 59.961 38.462 0.00 0.00 0.00 3.13
128 186 5.532779 AGAATTTGAGTTCAGACAGTTTCCC 59.467 40.000 0.00 0.00 0.00 3.97
129 187 4.503714 TTTGAGTTCAGACAGTTTCCCT 57.496 40.909 0.00 0.00 0.00 4.20
130 188 3.753294 TGAGTTCAGACAGTTTCCCTC 57.247 47.619 0.00 0.00 0.00 4.30
131 189 2.035961 TGAGTTCAGACAGTTTCCCTCG 59.964 50.000 0.00 0.00 0.00 4.63
132 190 2.036089 GAGTTCAGACAGTTTCCCTCGT 59.964 50.000 0.00 0.00 0.00 4.18
133 191 2.036089 AGTTCAGACAGTTTCCCTCGTC 59.964 50.000 0.00 0.00 0.00 4.20
134 192 0.966920 TCAGACAGTTTCCCTCGTCC 59.033 55.000 0.00 0.00 0.00 4.79
135 193 0.037232 CAGACAGTTTCCCTCGTCCC 60.037 60.000 0.00 0.00 0.00 4.46
136 194 0.178929 AGACAGTTTCCCTCGTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
137 195 0.037232 GACAGTTTCCCTCGTCCCTG 60.037 60.000 0.00 0.00 0.00 4.45
138 196 1.376037 CAGTTTCCCTCGTCCCTGC 60.376 63.158 0.00 0.00 0.00 4.85
139 197 1.536662 AGTTTCCCTCGTCCCTGCT 60.537 57.895 0.00 0.00 0.00 4.24
140 198 1.128188 AGTTTCCCTCGTCCCTGCTT 61.128 55.000 0.00 0.00 0.00 3.91
141 199 0.673956 GTTTCCCTCGTCCCTGCTTC 60.674 60.000 0.00 0.00 0.00 3.86
155 213 1.481772 CTGCTTCTCTCTCCTCCAAGG 59.518 57.143 0.00 0.00 36.46 3.61
157 215 1.480545 GCTTCTCTCTCCTCCAAGGAC 59.519 57.143 0.00 0.00 40.06 3.85
159 217 3.373830 CTTCTCTCTCCTCCAAGGACAT 58.626 50.000 0.00 0.00 40.06 3.06
172 234 3.264450 CCAAGGACATCTAGGGTTTCTGT 59.736 47.826 0.00 0.00 0.00 3.41
182 244 1.076677 AGGGTTTCTGTCTCCCGTCTA 59.923 52.381 0.00 0.00 45.27 2.59
198 260 1.655654 CTACGGCGTCGCTGATCTG 60.656 63.158 31.78 14.03 38.46 2.90
278 341 0.769247 AGGGCTCCGTTTTTAGGTGT 59.231 50.000 0.00 0.00 0.00 4.16
329 399 2.097791 GCTTAGGAAGACGAGACGACAT 59.902 50.000 0.00 0.00 0.00 3.06
340 410 1.734465 GAGACGACATTGGCTTCTTGG 59.266 52.381 0.00 0.00 0.00 3.61
414 484 1.754380 CGTTGGAGGGTGTGTGGAGA 61.754 60.000 0.00 0.00 0.00 3.71
450 520 0.099968 CTTGCGAGATTCGGTCGGTA 59.900 55.000 0.00 0.00 40.84 4.02
486 556 2.295885 TCTACTCGGATCCGGTCTTTC 58.704 52.381 32.79 0.00 40.25 2.62
500 570 4.271687 CGGTCTTTCTTCGTCTTTGTTTG 58.728 43.478 0.00 0.00 0.00 2.93
543 613 9.799106 ATCCTTCTGATCTAAACTTCTTTTCAA 57.201 29.630 0.00 0.00 0.00 2.69
571 641 1.065551 GGTTGCTGTTCTGGTGTGTTC 59.934 52.381 0.00 0.00 0.00 3.18
609 679 1.285023 CGACGACTTCCCGACAGTT 59.715 57.895 0.00 0.00 0.00 3.16
629 699 6.877322 ACAGTTTACTACAACAACTTGTGTCT 59.123 34.615 0.00 0.00 40.60 3.41
726 797 6.998074 GTGGTCCATGAATCTGGATGTAATAA 59.002 38.462 0.00 0.00 46.67 1.40
727 798 7.667219 GTGGTCCATGAATCTGGATGTAATAAT 59.333 37.037 0.00 0.00 46.67 1.28
728 799 8.889445 TGGTCCATGAATCTGGATGTAATAATA 58.111 33.333 0.00 0.00 46.67 0.98
915 992 1.824230 ACATACCAAACATGCGCCAAT 59.176 42.857 4.18 0.00 0.00 3.16
947 1024 4.447724 TGTTTGCTTCATCTTGTACGAGAC 59.552 41.667 15.25 3.05 0.00 3.36
950 1027 3.255888 TGCTTCATCTTGTACGAGACAGT 59.744 43.478 15.25 0.00 39.88 3.55
951 1028 4.457949 TGCTTCATCTTGTACGAGACAGTA 59.542 41.667 15.25 8.39 39.88 2.74
980 1057 9.170584 GTATGCTATATATACATGCACACGTAG 57.829 37.037 7.17 0.00 36.44 3.51
985 1062 9.582223 CTATATATACATGCACACGTAGTATCG 57.418 37.037 0.00 0.00 41.61 2.92
986 1063 4.823790 ATACATGCACACGTAGTATCGA 57.176 40.909 0.00 0.00 41.61 3.59
996 1073 6.179193 CACACGTAGTATCGATATCAGATCG 58.821 44.000 8.66 10.18 41.61 3.69
1017 1094 1.710013 ACATGGCTAACGTCAACGAG 58.290 50.000 9.88 0.00 43.02 4.18
1176 1259 2.652530 GGCCTCGACAACACCGTA 59.347 61.111 0.00 0.00 0.00 4.02
1210 1293 3.733960 CGCTCGACGTCACCTCCA 61.734 66.667 17.16 0.00 36.87 3.86
1212 1295 1.733399 GCTCGACGTCACCTCCAAC 60.733 63.158 17.16 0.00 0.00 3.77
1214 1297 1.848932 CTCGACGTCACCTCCAACGA 61.849 60.000 17.16 3.12 41.29 3.85
1215 1298 1.008194 CGACGTCACCTCCAACGAA 60.008 57.895 17.16 0.00 41.29 3.85
1645 1740 1.520666 CAGTGGGGGATGTACCGTC 59.479 63.158 0.00 0.00 40.11 4.79
1886 1981 7.725818 AGCTCTAACAAACTTTAGTTGTACC 57.274 36.000 0.00 0.00 38.44 3.34
1887 1982 7.506971 AGCTCTAACAAACTTTAGTTGTACCT 58.493 34.615 0.00 0.00 38.44 3.08
1888 1983 7.991460 AGCTCTAACAAACTTTAGTTGTACCTT 59.009 33.333 0.00 0.00 38.44 3.50
1889 1984 8.618677 GCTCTAACAAACTTTAGTTGTACCTTT 58.381 33.333 0.00 0.00 38.44 3.11
1892 1987 9.874215 CTAACAAACTTTAGTTGTACCTTTAGC 57.126 33.333 0.00 0.00 38.44 3.09
1893 1988 6.951643 ACAAACTTTAGTTGTACCTTTAGCG 58.048 36.000 0.00 0.00 38.44 4.26
1894 1989 6.762661 ACAAACTTTAGTTGTACCTTTAGCGA 59.237 34.615 0.00 0.00 38.44 4.93
1895 1990 6.775939 AACTTTAGTTGTACCTTTAGCGAC 57.224 37.500 0.00 0.00 36.80 5.19
1896 1991 6.094193 ACTTTAGTTGTACCTTTAGCGACT 57.906 37.500 0.00 0.00 0.00 4.18
1897 1992 6.519382 ACTTTAGTTGTACCTTTAGCGACTT 58.481 36.000 0.00 0.00 0.00 3.01
1898 1993 6.988580 ACTTTAGTTGTACCTTTAGCGACTTT 59.011 34.615 0.00 0.00 0.00 2.66
1899 1994 7.170489 ACTTTAGTTGTACCTTTAGCGACTTTC 59.830 37.037 0.00 0.00 0.00 2.62
1900 1995 4.313282 AGTTGTACCTTTAGCGACTTTCC 58.687 43.478 0.00 0.00 0.00 3.13
1901 1996 4.060205 GTTGTACCTTTAGCGACTTTCCA 58.940 43.478 0.00 0.00 0.00 3.53
1902 1997 4.546829 TGTACCTTTAGCGACTTTCCAT 57.453 40.909 0.00 0.00 0.00 3.41
1903 1998 5.664294 TGTACCTTTAGCGACTTTCCATA 57.336 39.130 0.00 0.00 0.00 2.74
1904 1999 5.413499 TGTACCTTTAGCGACTTTCCATAC 58.587 41.667 0.00 0.00 0.00 2.39
1905 2000 3.518590 ACCTTTAGCGACTTTCCATACG 58.481 45.455 0.00 0.00 0.00 3.06
1910 2005 2.205307 GCGACTTTCCATACGCTACT 57.795 50.000 0.00 0.00 46.06 2.57
1911 2006 2.537401 GCGACTTTCCATACGCTACTT 58.463 47.619 0.00 0.00 46.06 2.24
1912 2007 2.534757 GCGACTTTCCATACGCTACTTC 59.465 50.000 0.00 0.00 46.06 3.01
1913 2008 3.734293 GCGACTTTCCATACGCTACTTCT 60.734 47.826 0.00 0.00 46.06 2.85
1914 2009 4.497006 GCGACTTTCCATACGCTACTTCTA 60.497 45.833 0.00 0.00 46.06 2.10
1915 2010 4.968788 CGACTTTCCATACGCTACTTCTAC 59.031 45.833 0.00 0.00 0.00 2.59
1916 2011 5.448225 CGACTTTCCATACGCTACTTCTACA 60.448 44.000 0.00 0.00 0.00 2.74
1917 2012 6.276832 ACTTTCCATACGCTACTTCTACAA 57.723 37.500 0.00 0.00 0.00 2.41
1918 2013 6.331061 ACTTTCCATACGCTACTTCTACAAG 58.669 40.000 0.00 0.00 35.50 3.16
1919 2014 4.303086 TCCATACGCTACTTCTACAAGC 57.697 45.455 0.00 0.00 32.09 4.01
1920 2015 3.952323 TCCATACGCTACTTCTACAAGCT 59.048 43.478 0.00 0.00 34.03 3.74
1921 2016 4.036498 TCCATACGCTACTTCTACAAGCTC 59.964 45.833 0.00 0.00 34.03 4.09
1922 2017 4.036971 CCATACGCTACTTCTACAAGCTCT 59.963 45.833 0.00 0.00 34.03 4.09
1923 2018 5.450688 CCATACGCTACTTCTACAAGCTCTT 60.451 44.000 0.00 0.00 34.03 2.85
1924 2019 3.839293 ACGCTACTTCTACAAGCTCTTG 58.161 45.455 7.99 7.99 45.58 3.02
1925 2020 3.182967 CGCTACTTCTACAAGCTCTTGG 58.817 50.000 13.48 0.00 44.45 3.61
1926 2021 3.119459 CGCTACTTCTACAAGCTCTTGGA 60.119 47.826 13.48 4.57 44.45 3.53
1927 2022 4.440802 CGCTACTTCTACAAGCTCTTGGAT 60.441 45.833 13.48 0.00 44.45 3.41
1928 2023 5.423886 GCTACTTCTACAAGCTCTTGGATT 58.576 41.667 13.48 0.00 44.45 3.01
1929 2024 5.877564 GCTACTTCTACAAGCTCTTGGATTT 59.122 40.000 13.48 0.00 44.45 2.17
1930 2025 7.042335 GCTACTTCTACAAGCTCTTGGATTTA 58.958 38.462 13.48 0.00 44.45 1.40
1931 2026 7.549488 GCTACTTCTACAAGCTCTTGGATTTAA 59.451 37.037 13.48 0.90 44.45 1.52
1932 2027 9.436957 CTACTTCTACAAGCTCTTGGATTTAAA 57.563 33.333 13.48 0.00 44.45 1.52
1933 2028 8.100508 ACTTCTACAAGCTCTTGGATTTAAAC 57.899 34.615 13.48 0.00 44.45 2.01
1934 2029 7.719633 ACTTCTACAAGCTCTTGGATTTAAACA 59.280 33.333 13.48 0.00 44.45 2.83
1935 2030 8.458573 TTCTACAAGCTCTTGGATTTAAACAA 57.541 30.769 13.48 0.00 44.45 2.83
1936 2031 8.099364 TCTACAAGCTCTTGGATTTAAACAAG 57.901 34.615 13.48 10.76 44.45 3.16
1937 2032 6.715347 ACAAGCTCTTGGATTTAAACAAGT 57.285 33.333 13.48 0.00 44.45 3.16
1938 2033 7.112452 ACAAGCTCTTGGATTTAAACAAGTT 57.888 32.000 13.48 3.95 44.45 2.66
1939 2034 7.555965 ACAAGCTCTTGGATTTAAACAAGTTT 58.444 30.769 13.48 3.47 44.45 2.66
1940 2035 7.492344 ACAAGCTCTTGGATTTAAACAAGTTTG 59.508 33.333 13.48 16.76 44.45 2.93
1941 2036 5.985530 AGCTCTTGGATTTAAACAAGTTTGC 59.014 36.000 14.70 15.58 43.40 3.68
1942 2037 5.985530 GCTCTTGGATTTAAACAAGTTTGCT 59.014 36.000 14.70 0.00 43.40 3.91
1943 2038 6.479990 GCTCTTGGATTTAAACAAGTTTGCTT 59.520 34.615 14.70 0.00 43.40 3.91
1944 2039 7.011389 GCTCTTGGATTTAAACAAGTTTGCTTT 59.989 33.333 14.70 0.00 43.40 3.51
1945 2040 8.195617 TCTTGGATTTAAACAAGTTTGCTTTG 57.804 30.769 14.70 0.00 43.40 2.77
1946 2041 6.356757 TGGATTTAAACAAGTTTGCTTTGC 57.643 33.333 8.37 0.00 34.23 3.68
1947 2042 5.295540 TGGATTTAAACAAGTTTGCTTTGCC 59.704 36.000 8.37 3.66 34.23 4.52
1948 2043 4.849111 TTTAAACAAGTTTGCTTTGCCG 57.151 36.364 8.37 0.00 34.23 5.69
1949 2044 2.663826 AAACAAGTTTGCTTTGCCGA 57.336 40.000 0.00 0.00 31.49 5.54
1950 2045 2.208326 AACAAGTTTGCTTTGCCGAG 57.792 45.000 0.00 0.00 31.49 4.63
1951 2046 1.388547 ACAAGTTTGCTTTGCCGAGA 58.611 45.000 0.00 0.00 31.49 4.04
1952 2047 1.065551 ACAAGTTTGCTTTGCCGAGAC 59.934 47.619 0.00 0.00 31.49 3.36
1953 2048 0.307760 AAGTTTGCTTTGCCGAGACG 59.692 50.000 0.00 0.00 0.00 4.18
1964 2059 2.125512 CGAGACGGAGGCCCAAAG 60.126 66.667 0.00 0.00 0.00 2.77
1965 2060 2.269241 GAGACGGAGGCCCAAAGG 59.731 66.667 0.00 0.00 0.00 3.11
1975 2070 2.956987 CCCAAAGGCAGCAACGAG 59.043 61.111 0.00 0.00 0.00 4.18
1976 2071 2.256461 CCAAAGGCAGCAACGAGC 59.744 61.111 0.00 0.00 46.19 5.03
2034 2129 4.413189 TCATTGCATTGATAGAGAGGGGAA 59.587 41.667 7.19 0.00 0.00 3.97
2068 2163 1.295101 CATCAGGGGCACGTACACA 59.705 57.895 0.00 0.00 0.00 3.72
2126 2221 1.506493 GTTGCTCAGCCCAGATATCG 58.494 55.000 0.00 0.00 0.00 2.92
2174 2269 0.396974 AACCTTTGGCTCCTGCACAA 60.397 50.000 0.00 0.00 41.91 3.33
2255 2350 4.932146 TCTTGTCGAAGATGATCGCATTA 58.068 39.130 0.00 0.00 42.44 1.90
2260 2355 3.251487 TCGAAGATGATCGCATTACGGTA 59.749 43.478 0.00 0.00 42.44 4.02
2305 2400 0.615331 GAGGCAATGGTGGAGAGTCA 59.385 55.000 0.00 0.00 0.00 3.41
2414 2509 2.125912 CACCAGGAGAGAACGCCG 60.126 66.667 0.00 0.00 40.86 6.46
2450 2545 2.771943 AGAGAAAACACACTCCACCAGA 59.228 45.455 0.00 0.00 34.13 3.86
2474 2569 1.817099 CTGAAGGGTCTCCGCATGC 60.817 63.158 7.91 7.91 38.33 4.06
2567 2662 3.526534 GTTGACAGAGGCAAGGTAGATC 58.473 50.000 0.00 0.00 0.00 2.75
2570 2665 3.055819 TGACAGAGGCAAGGTAGATCAAC 60.056 47.826 0.00 0.00 0.00 3.18
2571 2666 2.237392 ACAGAGGCAAGGTAGATCAACC 59.763 50.000 0.00 0.00 40.06 3.77
2572 2667 1.482593 AGAGGCAAGGTAGATCAACCG 59.517 52.381 0.00 0.00 44.77 4.44
2573 2668 1.480954 GAGGCAAGGTAGATCAACCGA 59.519 52.381 0.00 0.00 44.77 4.69
2574 2669 1.207329 AGGCAAGGTAGATCAACCGAC 59.793 52.381 0.00 0.00 44.77 4.79
2575 2670 1.653151 GCAAGGTAGATCAACCGACC 58.347 55.000 0.00 0.00 44.77 4.79
2576 2671 1.922570 CAAGGTAGATCAACCGACCG 58.077 55.000 0.00 0.00 44.77 4.79
2577 2672 1.475280 CAAGGTAGATCAACCGACCGA 59.525 52.381 0.00 0.00 44.77 4.69
2578 2673 1.843368 AGGTAGATCAACCGACCGAA 58.157 50.000 0.00 0.00 44.77 4.30
2579 2674 1.749634 AGGTAGATCAACCGACCGAAG 59.250 52.381 0.00 0.00 44.77 3.79
2580 2675 1.557651 GTAGATCAACCGACCGAAGC 58.442 55.000 0.00 0.00 0.00 3.86
2581 2676 0.458669 TAGATCAACCGACCGAAGCC 59.541 55.000 0.00 0.00 0.00 4.35
2582 2677 2.125673 ATCAACCGACCGAAGCCG 60.126 61.111 0.00 0.00 0.00 5.52
2603 2698 2.908015 GGCTAAGATGGCCGTGGA 59.092 61.111 0.00 0.00 40.19 4.02
2604 2699 1.451936 GGCTAAGATGGCCGTGGAT 59.548 57.895 0.00 0.00 40.19 3.41
2605 2700 0.603975 GGCTAAGATGGCCGTGGATC 60.604 60.000 0.00 0.00 40.19 3.36
2606 2701 0.106708 GCTAAGATGGCCGTGGATCA 59.893 55.000 0.00 0.00 0.00 2.92
2607 2702 1.475034 GCTAAGATGGCCGTGGATCAA 60.475 52.381 0.00 0.00 0.00 2.57
2608 2703 2.213499 CTAAGATGGCCGTGGATCAAC 58.787 52.381 0.00 0.00 0.00 3.18
2609 2704 0.744414 AAGATGGCCGTGGATCAACG 60.744 55.000 16.02 16.02 43.20 4.10
2610 2705 1.153449 GATGGCCGTGGATCAACGA 60.153 57.895 24.31 4.47 46.49 3.85
2611 2706 1.153369 ATGGCCGTGGATCAACGAG 60.153 57.895 24.31 14.49 46.49 4.18
2612 2707 3.195698 GGCCGTGGATCAACGAGC 61.196 66.667 24.31 22.43 46.49 5.03
2613 2708 2.125512 GCCGTGGATCAACGAGCT 60.126 61.111 24.31 0.00 46.49 4.09
2614 2709 1.741770 GCCGTGGATCAACGAGCTT 60.742 57.895 24.31 0.00 46.49 3.74
2615 2710 1.298859 GCCGTGGATCAACGAGCTTT 61.299 55.000 24.31 0.00 46.49 3.51
2616 2711 0.443869 CCGTGGATCAACGAGCTTTG 59.556 55.000 24.31 1.95 46.49 2.77
2617 2712 0.179215 CGTGGATCAACGAGCTTTGC 60.179 55.000 18.08 0.00 46.49 3.68
2618 2713 1.160137 GTGGATCAACGAGCTTTGCT 58.840 50.000 0.00 0.00 43.88 3.91
2633 2728 2.771435 TGCTCACCGCAGATCAATG 58.229 52.632 0.00 0.00 45.47 2.82
2634 2729 0.249955 TGCTCACCGCAGATCAATGA 59.750 50.000 0.00 0.00 45.47 2.57
2635 2730 1.134310 TGCTCACCGCAGATCAATGAT 60.134 47.619 0.00 0.00 45.47 2.45
2636 2731 1.263484 GCTCACCGCAGATCAATGATG 59.737 52.381 0.00 0.00 38.92 3.07
2637 2732 1.871676 CTCACCGCAGATCAATGATGG 59.128 52.381 0.00 0.00 0.00 3.51
2638 2733 1.485895 TCACCGCAGATCAATGATGGA 59.514 47.619 0.00 0.00 0.00 3.41
2639 2734 2.105306 TCACCGCAGATCAATGATGGAT 59.895 45.455 0.00 0.00 0.00 3.41
2640 2735 3.324556 TCACCGCAGATCAATGATGGATA 59.675 43.478 0.00 0.00 0.00 2.59
2641 2736 4.019950 TCACCGCAGATCAATGATGGATAT 60.020 41.667 0.00 0.00 0.00 1.63
2642 2737 4.094442 CACCGCAGATCAATGATGGATATG 59.906 45.833 0.00 0.06 37.12 1.78
2643 2738 4.259356 CCGCAGATCAATGATGGATATGT 58.741 43.478 0.00 0.00 36.59 2.29
2644 2739 5.046376 ACCGCAGATCAATGATGGATATGTA 60.046 40.000 0.00 0.00 36.59 2.29
2645 2740 6.053650 CCGCAGATCAATGATGGATATGTAT 58.946 40.000 0.00 0.00 36.59 2.29
2646 2741 6.018180 CCGCAGATCAATGATGGATATGTATG 60.018 42.308 0.00 0.00 36.59 2.39
2647 2742 6.759827 CGCAGATCAATGATGGATATGTATGA 59.240 38.462 0.00 0.00 36.59 2.15
2648 2743 7.042658 CGCAGATCAATGATGGATATGTATGAG 60.043 40.741 0.00 0.00 36.59 2.90
2649 2744 7.226918 GCAGATCAATGATGGATATGTATGAGG 59.773 40.741 0.00 0.00 36.59 3.86
2650 2745 8.265764 CAGATCAATGATGGATATGTATGAGGT 58.734 37.037 0.00 0.00 31.19 3.85
2651 2746 9.498039 AGATCAATGATGGATATGTATGAGGTA 57.502 33.333 0.00 0.00 0.00 3.08
2652 2747 9.761504 GATCAATGATGGATATGTATGAGGTAG 57.238 37.037 0.00 0.00 0.00 3.18
2653 2748 8.082672 TCAATGATGGATATGTATGAGGTAGG 57.917 38.462 0.00 0.00 0.00 3.18
2654 2749 7.126268 TCAATGATGGATATGTATGAGGTAGGG 59.874 40.741 0.00 0.00 0.00 3.53
2655 2750 5.915628 TGATGGATATGTATGAGGTAGGGT 58.084 41.667 0.00 0.00 0.00 4.34
2656 2751 7.051696 TGATGGATATGTATGAGGTAGGGTA 57.948 40.000 0.00 0.00 0.00 3.69
2657 2752 7.662083 TGATGGATATGTATGAGGTAGGGTAT 58.338 38.462 0.00 0.00 0.00 2.73
2658 2753 7.565029 TGATGGATATGTATGAGGTAGGGTATG 59.435 40.741 0.00 0.00 0.00 2.39
2659 2754 5.661312 TGGATATGTATGAGGTAGGGTATGC 59.339 44.000 0.00 0.00 0.00 3.14
2660 2755 5.221263 GGATATGTATGAGGTAGGGTATGCG 60.221 48.000 0.00 0.00 0.00 4.73
2661 2756 2.953453 TGTATGAGGTAGGGTATGCGT 58.047 47.619 0.00 0.00 0.00 5.24
2662 2757 4.103013 TGTATGAGGTAGGGTATGCGTA 57.897 45.455 0.00 0.00 0.00 4.42
2663 2758 4.669700 TGTATGAGGTAGGGTATGCGTAT 58.330 43.478 0.00 0.00 0.00 3.06
2664 2759 4.461431 TGTATGAGGTAGGGTATGCGTATG 59.539 45.833 0.00 0.00 0.00 2.39
2665 2760 2.953453 TGAGGTAGGGTATGCGTATGT 58.047 47.619 0.00 0.00 0.00 2.29
2666 2761 4.103013 TGAGGTAGGGTATGCGTATGTA 57.897 45.455 0.00 0.00 0.00 2.29
2667 2762 4.669700 TGAGGTAGGGTATGCGTATGTAT 58.330 43.478 0.00 0.00 0.00 2.29
2668 2763 4.461431 TGAGGTAGGGTATGCGTATGTATG 59.539 45.833 0.00 0.00 0.00 2.39
2669 2764 4.669700 AGGTAGGGTATGCGTATGTATGA 58.330 43.478 0.00 0.00 0.00 2.15
2670 2765 5.269991 AGGTAGGGTATGCGTATGTATGAT 58.730 41.667 0.00 0.00 0.00 2.45
2671 2766 5.127194 AGGTAGGGTATGCGTATGTATGATG 59.873 44.000 0.00 0.00 0.00 3.07
2672 2767 5.105473 GGTAGGGTATGCGTATGTATGATGT 60.105 44.000 0.00 0.00 0.00 3.06
2673 2768 5.073311 AGGGTATGCGTATGTATGATGTC 57.927 43.478 0.00 0.00 0.00 3.06
2674 2769 4.772624 AGGGTATGCGTATGTATGATGTCT 59.227 41.667 0.00 0.00 0.00 3.41
2675 2770 4.864806 GGGTATGCGTATGTATGATGTCTG 59.135 45.833 0.00 0.00 0.00 3.51
2676 2771 5.470368 GGTATGCGTATGTATGATGTCTGT 58.530 41.667 0.00 0.00 0.00 3.41
2677 2772 6.349860 GGGTATGCGTATGTATGATGTCTGTA 60.350 42.308 0.00 0.00 0.00 2.74
2678 2773 6.527023 GGTATGCGTATGTATGATGTCTGTAC 59.473 42.308 0.00 0.00 0.00 2.90
2679 2774 4.866921 TGCGTATGTATGATGTCTGTACC 58.133 43.478 0.00 0.00 0.00 3.34
2680 2775 3.912563 GCGTATGTATGATGTCTGTACCG 59.087 47.826 0.00 0.00 0.00 4.02
2681 2776 4.556104 GCGTATGTATGATGTCTGTACCGT 60.556 45.833 0.00 0.00 0.00 4.83
2682 2777 4.909880 CGTATGTATGATGTCTGTACCGTG 59.090 45.833 0.00 0.00 0.00 4.94
2683 2778 5.505159 CGTATGTATGATGTCTGTACCGTGT 60.505 44.000 0.00 0.00 0.00 4.49
2684 2779 4.794278 TGTATGATGTCTGTACCGTGTT 57.206 40.909 0.00 0.00 0.00 3.32
2685 2780 5.142061 TGTATGATGTCTGTACCGTGTTT 57.858 39.130 0.00 0.00 0.00 2.83
2686 2781 6.270156 TGTATGATGTCTGTACCGTGTTTA 57.730 37.500 0.00 0.00 0.00 2.01
2687 2782 6.689554 TGTATGATGTCTGTACCGTGTTTAA 58.310 36.000 0.00 0.00 0.00 1.52
2688 2783 7.153315 TGTATGATGTCTGTACCGTGTTTAAA 58.847 34.615 0.00 0.00 0.00 1.52
2689 2784 7.656542 TGTATGATGTCTGTACCGTGTTTAAAA 59.343 33.333 0.00 0.00 0.00 1.52
2690 2785 6.922247 TGATGTCTGTACCGTGTTTAAAAA 57.078 33.333 0.00 0.00 0.00 1.94
2712 2807 4.473477 AAAAATGAAACCCAACACGGAA 57.527 36.364 0.00 0.00 36.56 4.30
2713 2808 3.726291 AAATGAAACCCAACACGGAAG 57.274 42.857 0.00 0.00 36.56 3.46
2714 2809 0.958822 ATGAAACCCAACACGGAAGC 59.041 50.000 0.00 0.00 36.56 3.86
2715 2810 0.106918 TGAAACCCAACACGGAAGCT 60.107 50.000 0.00 0.00 36.56 3.74
2716 2811 1.029681 GAAACCCAACACGGAAGCTT 58.970 50.000 0.00 0.00 36.56 3.74
2717 2812 1.001706 GAAACCCAACACGGAAGCTTC 60.002 52.381 18.54 18.54 36.56 3.86
2718 2813 0.106918 AACCCAACACGGAAGCTTCA 60.107 50.000 27.02 0.00 36.56 3.02
2719 2814 0.110486 ACCCAACACGGAAGCTTCAT 59.890 50.000 27.02 12.43 36.56 2.57
2720 2815 1.247567 CCCAACACGGAAGCTTCATT 58.752 50.000 27.02 10.84 36.56 2.57
2721 2816 1.068333 CCCAACACGGAAGCTTCATTG 60.068 52.381 27.02 22.94 36.56 2.82
2722 2817 1.068333 CCAACACGGAAGCTTCATTGG 60.068 52.381 27.02 25.52 36.56 3.16
2723 2818 1.068333 CAACACGGAAGCTTCATTGGG 60.068 52.381 27.02 18.83 0.00 4.12
2724 2819 1.244019 ACACGGAAGCTTCATTGGGC 61.244 55.000 27.02 8.31 0.00 5.36
2725 2820 2.040544 ACGGAAGCTTCATTGGGCG 61.041 57.895 27.02 20.87 0.00 6.13
2726 2821 2.764314 CGGAAGCTTCATTGGGCGG 61.764 63.158 27.02 0.69 0.00 6.13
2727 2822 2.418083 GGAAGCTTCATTGGGCGGG 61.418 63.158 27.02 0.00 0.00 6.13
2728 2823 1.678970 GAAGCTTCATTGGGCGGGT 60.679 57.895 21.67 0.00 0.00 5.28
2729 2824 1.657751 GAAGCTTCATTGGGCGGGTC 61.658 60.000 21.67 0.00 0.00 4.46
2730 2825 3.140814 GCTTCATTGGGCGGGTCC 61.141 66.667 0.00 0.00 0.00 4.46
2731 2826 2.354729 CTTCATTGGGCGGGTCCA 59.645 61.111 0.00 0.00 36.21 4.02
2732 2827 2.034999 TTCATTGGGCGGGTCCAC 59.965 61.111 0.00 0.00 36.38 4.02
2733 2828 2.484287 CTTCATTGGGCGGGTCCACT 62.484 60.000 0.00 0.00 36.38 4.00
2734 2829 2.751436 CATTGGGCGGGTCCACTG 60.751 66.667 0.00 0.00 36.38 3.66
2735 2830 3.256960 ATTGGGCGGGTCCACTGT 61.257 61.111 0.00 0.00 36.38 3.55
2736 2831 3.567579 ATTGGGCGGGTCCACTGTG 62.568 63.158 0.00 0.00 36.38 3.66
2739 2834 4.250305 GGCGGGTCCACTGTGTGT 62.250 66.667 7.08 0.00 34.01 3.72
2740 2835 2.665185 GCGGGTCCACTGTGTGTC 60.665 66.667 7.08 0.00 0.00 3.67
2741 2836 2.355837 CGGGTCCACTGTGTGTCG 60.356 66.667 7.08 1.86 0.00 4.35
2742 2837 2.665185 GGGTCCACTGTGTGTCGC 60.665 66.667 7.08 1.87 0.00 5.19
2743 2838 3.036084 GGTCCACTGTGTGTCGCG 61.036 66.667 0.00 0.00 0.00 5.87
2744 2839 3.702555 GTCCACTGTGTGTCGCGC 61.703 66.667 0.00 0.00 0.00 6.86
2761 2856 3.013990 CGCGCGCGTGTTTTGAAA 61.014 55.556 42.49 0.00 34.35 2.69
2762 2857 2.532811 GCGCGCGTGTTTTGAAAC 59.467 55.556 32.35 6.30 39.33 2.78
2763 2858 1.937362 GCGCGCGTGTTTTGAAACT 60.937 52.632 32.35 0.00 39.59 2.66
2764 2859 1.851984 GCGCGCGTGTTTTGAAACTC 61.852 55.000 32.35 5.47 39.59 3.01
2765 2860 1.259544 CGCGCGTGTTTTGAAACTCC 61.260 55.000 24.19 0.00 39.59 3.85
2766 2861 0.933047 GCGCGTGTTTTGAAACTCCC 60.933 55.000 8.43 0.00 39.59 4.30
2767 2862 0.656205 CGCGTGTTTTGAAACTCCCG 60.656 55.000 0.00 5.10 39.59 5.14
2768 2863 0.379316 GCGTGTTTTGAAACTCCCGT 59.621 50.000 7.97 0.00 39.59 5.28
2769 2864 1.202211 GCGTGTTTTGAAACTCCCGTT 60.202 47.619 7.97 0.00 39.59 4.44
2770 2865 2.446282 CGTGTTTTGAAACTCCCGTTG 58.554 47.619 7.97 0.00 39.59 4.10
2771 2866 2.159490 CGTGTTTTGAAACTCCCGTTGT 60.159 45.455 7.97 0.00 39.59 3.32
2772 2867 3.175929 GTGTTTTGAAACTCCCGTTGTG 58.824 45.455 7.97 0.00 39.59 3.33
2773 2868 2.820787 TGTTTTGAAACTCCCGTTGTGT 59.179 40.909 7.97 0.00 39.59 3.72
2774 2869 3.175929 GTTTTGAAACTCCCGTTGTGTG 58.824 45.455 0.00 0.00 36.03 3.82
2775 2870 2.116827 TTGAAACTCCCGTTGTGTGT 57.883 45.000 0.00 0.00 32.65 3.72
2776 2871 2.116827 TGAAACTCCCGTTGTGTGTT 57.883 45.000 0.00 0.00 32.65 3.32
2777 2872 2.438411 TGAAACTCCCGTTGTGTGTTT 58.562 42.857 0.00 0.00 32.65 2.83
2778 2873 2.162608 TGAAACTCCCGTTGTGTGTTTG 59.837 45.455 0.00 0.00 32.65 2.93
2779 2874 1.828979 AACTCCCGTTGTGTGTTTGT 58.171 45.000 0.00 0.00 30.67 2.83
2780 2875 1.828979 ACTCCCGTTGTGTGTTTGTT 58.171 45.000 0.00 0.00 0.00 2.83
2781 2876 1.470890 ACTCCCGTTGTGTGTTTGTTG 59.529 47.619 0.00 0.00 0.00 3.33
2782 2877 0.811915 TCCCGTTGTGTGTTTGTTGG 59.188 50.000 0.00 0.00 0.00 3.77
2783 2878 0.811915 CCCGTTGTGTGTTTGTTGGA 59.188 50.000 0.00 0.00 0.00 3.53
2784 2879 1.202582 CCCGTTGTGTGTTTGTTGGAA 59.797 47.619 0.00 0.00 0.00 3.53
2785 2880 2.525055 CCGTTGTGTGTTTGTTGGAAG 58.475 47.619 0.00 0.00 0.00 3.46
2786 2881 2.525055 CGTTGTGTGTTTGTTGGAAGG 58.475 47.619 0.00 0.00 0.00 3.46
2787 2882 2.162608 CGTTGTGTGTTTGTTGGAAGGA 59.837 45.455 0.00 0.00 0.00 3.36
2788 2883 3.366476 CGTTGTGTGTTTGTTGGAAGGAA 60.366 43.478 0.00 0.00 0.00 3.36
2789 2884 4.676723 CGTTGTGTGTTTGTTGGAAGGAAT 60.677 41.667 0.00 0.00 0.00 3.01
2790 2885 4.647424 TGTGTGTTTGTTGGAAGGAATC 57.353 40.909 0.00 0.00 0.00 2.52
2791 2886 4.019858 TGTGTGTTTGTTGGAAGGAATCA 58.980 39.130 0.00 0.00 0.00 2.57
2792 2887 4.464244 TGTGTGTTTGTTGGAAGGAATCAA 59.536 37.500 0.00 0.00 0.00 2.57
2793 2888 4.803613 GTGTGTTTGTTGGAAGGAATCAAC 59.196 41.667 0.00 0.00 42.38 3.18
2794 2889 4.142049 TGTGTTTGTTGGAAGGAATCAACC 60.142 41.667 0.00 0.00 41.64 3.77
2795 2890 4.026744 TGTTTGTTGGAAGGAATCAACCA 58.973 39.130 0.00 0.00 41.64 3.67
2796 2891 4.142049 TGTTTGTTGGAAGGAATCAACCAC 60.142 41.667 0.00 0.00 41.64 4.16
2797 2892 2.226330 TGTTGGAAGGAATCAACCACG 58.774 47.619 0.00 0.00 41.64 4.94
2798 2893 2.227194 GTTGGAAGGAATCAACCACGT 58.773 47.619 0.00 0.00 37.77 4.49
2799 2894 2.621526 GTTGGAAGGAATCAACCACGTT 59.378 45.455 0.00 0.00 37.77 3.99
2800 2895 2.226330 TGGAAGGAATCAACCACGTTG 58.774 47.619 0.00 0.00 43.99 4.10
2801 2896 2.227194 GGAAGGAATCAACCACGTTGT 58.773 47.619 4.56 0.00 43.23 3.32
2802 2897 2.031157 GGAAGGAATCAACCACGTTGTG 60.031 50.000 4.56 0.00 43.23 3.33
2803 2898 2.341846 AGGAATCAACCACGTTGTGT 57.658 45.000 4.56 0.00 43.23 3.72
2804 2899 3.478857 AGGAATCAACCACGTTGTGTA 57.521 42.857 4.56 0.00 43.23 2.90
2805 2900 3.135994 AGGAATCAACCACGTTGTGTAC 58.864 45.455 4.56 0.00 43.23 2.90
2813 2908 2.049802 CGTTGTGTACGTCCGGCT 60.050 61.111 0.00 0.00 45.14 5.52
2814 2909 2.084681 CGTTGTGTACGTCCGGCTC 61.085 63.158 0.00 0.00 45.14 4.70
2815 2910 2.084681 GTTGTGTACGTCCGGCTCG 61.085 63.158 15.21 15.21 0.00 5.03
2830 2925 4.174411 CGGCTCGGATTAGAATACATCA 57.826 45.455 0.00 0.00 0.00 3.07
2831 2926 3.921021 CGGCTCGGATTAGAATACATCAC 59.079 47.826 0.00 0.00 0.00 3.06
2832 2927 4.558697 CGGCTCGGATTAGAATACATCACA 60.559 45.833 0.00 0.00 0.00 3.58
2833 2928 4.926238 GGCTCGGATTAGAATACATCACAG 59.074 45.833 0.00 0.00 0.00 3.66
2834 2929 5.279006 GGCTCGGATTAGAATACATCACAGA 60.279 44.000 0.00 0.00 0.00 3.41
2835 2930 6.393990 GCTCGGATTAGAATACATCACAGAT 58.606 40.000 0.00 0.00 0.00 2.90
2836 2931 6.870965 GCTCGGATTAGAATACATCACAGATT 59.129 38.462 0.00 0.00 0.00 2.40
2837 2932 7.386299 GCTCGGATTAGAATACATCACAGATTT 59.614 37.037 0.00 0.00 0.00 2.17
2838 2933 8.593492 TCGGATTAGAATACATCACAGATTTG 57.407 34.615 0.00 0.00 0.00 2.32
2839 2934 7.657354 TCGGATTAGAATACATCACAGATTTGG 59.343 37.037 0.00 0.00 0.00 3.28
2840 2935 7.657354 CGGATTAGAATACATCACAGATTTGGA 59.343 37.037 0.00 0.00 0.00 3.53
2841 2936 9.342308 GGATTAGAATACATCACAGATTTGGAA 57.658 33.333 0.00 0.00 0.00 3.53
2845 2940 8.585471 AGAATACATCACAGATTTGGAATTGT 57.415 30.769 0.00 0.00 0.00 2.71
2846 2941 9.685276 AGAATACATCACAGATTTGGAATTGTA 57.315 29.630 0.00 0.00 0.00 2.41
2851 2946 9.466497 ACATCACAGATTTGGAATTGTATTACT 57.534 29.630 0.00 0.00 0.00 2.24
2852 2947 9.726232 CATCACAGATTTGGAATTGTATTACTG 57.274 33.333 0.00 0.00 0.00 2.74
2853 2948 8.279970 TCACAGATTTGGAATTGTATTACTGG 57.720 34.615 0.00 0.00 0.00 4.00
2854 2949 7.888021 TCACAGATTTGGAATTGTATTACTGGT 59.112 33.333 0.00 0.00 0.00 4.00
2855 2950 9.173021 CACAGATTTGGAATTGTATTACTGGTA 57.827 33.333 0.00 0.00 0.00 3.25
2856 2951 9.396022 ACAGATTTGGAATTGTATTACTGGTAG 57.604 33.333 0.00 0.00 0.00 3.18
2857 2952 8.840321 CAGATTTGGAATTGTATTACTGGTAGG 58.160 37.037 0.00 0.00 0.00 3.18
2858 2953 8.778059 AGATTTGGAATTGTATTACTGGTAGGA 58.222 33.333 0.00 0.00 0.00 2.94
2859 2954 9.403583 GATTTGGAATTGTATTACTGGTAGGAA 57.596 33.333 0.00 0.00 0.00 3.36
2860 2955 8.801882 TTTGGAATTGTATTACTGGTAGGAAG 57.198 34.615 0.00 0.00 0.00 3.46
2861 2956 6.354130 TGGAATTGTATTACTGGTAGGAAGC 58.646 40.000 0.00 0.00 0.00 3.86
2862 2957 6.157994 TGGAATTGTATTACTGGTAGGAAGCT 59.842 38.462 0.00 0.00 0.00 3.74
2863 2958 7.346175 TGGAATTGTATTACTGGTAGGAAGCTA 59.654 37.037 0.00 0.00 0.00 3.32
2864 2959 8.376270 GGAATTGTATTACTGGTAGGAAGCTAT 58.624 37.037 0.00 0.00 0.00 2.97
2868 2963 9.650714 TTGTATTACTGGTAGGAAGCTATAAGA 57.349 33.333 0.00 0.00 0.00 2.10
2869 2964 9.824216 TGTATTACTGGTAGGAAGCTATAAGAT 57.176 33.333 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.281688 ACACTTGCATGCTTCTGGTTAAAT 59.718 37.500 20.33 0.00 0.00 1.40
11 12 1.136141 CACGAGACACTTGCATGCTTC 60.136 52.381 20.33 7.41 0.00 3.86
70 71 1.901085 GACACTTCGCCAGGGAGAT 59.099 57.895 0.00 0.00 0.00 2.75
72 73 2.125912 CGACACTTCGCCAGGGAG 60.126 66.667 0.00 0.00 38.71 4.30
73 74 2.599281 TCGACACTTCGCCAGGGA 60.599 61.111 0.00 0.00 45.46 4.20
74 75 1.592400 TACTCGACACTTCGCCAGGG 61.592 60.000 0.00 0.00 45.46 4.45
79 80 0.457853 TGGCATACTCGACACTTCGC 60.458 55.000 0.00 0.00 45.46 4.70
82 83 0.898320 AGCTGGCATACTCGACACTT 59.102 50.000 0.00 0.00 0.00 3.16
84 85 1.134367 TGTAGCTGGCATACTCGACAC 59.866 52.381 0.00 0.00 0.00 3.67
86 87 1.676529 TCTGTAGCTGGCATACTCGAC 59.323 52.381 0.00 0.00 0.00 4.20
88 89 2.871182 TTCTGTAGCTGGCATACTCG 57.129 50.000 0.00 0.00 0.00 4.18
97 155 5.698089 TGTCTGAACTCAAATTCTGTAGCTG 59.302 40.000 0.00 0.00 0.00 4.24
98 156 5.858381 TGTCTGAACTCAAATTCTGTAGCT 58.142 37.500 0.00 0.00 0.00 3.32
103 161 6.433766 GGAAACTGTCTGAACTCAAATTCTG 58.566 40.000 0.00 0.00 0.00 3.02
104 162 5.532779 GGGAAACTGTCTGAACTCAAATTCT 59.467 40.000 0.00 0.00 0.00 2.40
116 174 0.037232 GGGACGAGGGAAACTGTCTG 60.037 60.000 0.00 0.00 31.84 3.51
122 180 0.673956 GAAGCAGGGACGAGGGAAAC 60.674 60.000 0.00 0.00 0.00 2.78
123 181 0.836400 AGAAGCAGGGACGAGGGAAA 60.836 55.000 0.00 0.00 0.00 3.13
124 182 1.229209 AGAAGCAGGGACGAGGGAA 60.229 57.895 0.00 0.00 0.00 3.97
125 183 1.682684 GAGAAGCAGGGACGAGGGA 60.683 63.158 0.00 0.00 0.00 4.20
126 184 1.671901 GAGAGAAGCAGGGACGAGGG 61.672 65.000 0.00 0.00 0.00 4.30
127 185 0.682855 AGAGAGAAGCAGGGACGAGG 60.683 60.000 0.00 0.00 0.00 4.63
128 186 0.738389 GAGAGAGAAGCAGGGACGAG 59.262 60.000 0.00 0.00 0.00 4.18
129 187 0.681564 GGAGAGAGAAGCAGGGACGA 60.682 60.000 0.00 0.00 0.00 4.20
130 188 0.682855 AGGAGAGAGAAGCAGGGACG 60.683 60.000 0.00 0.00 0.00 4.79
131 189 1.111277 GAGGAGAGAGAAGCAGGGAC 58.889 60.000 0.00 0.00 0.00 4.46
132 190 0.032615 GGAGGAGAGAGAAGCAGGGA 60.033 60.000 0.00 0.00 0.00 4.20
133 191 0.325110 TGGAGGAGAGAGAAGCAGGG 60.325 60.000 0.00 0.00 0.00 4.45
134 192 1.481772 CTTGGAGGAGAGAGAAGCAGG 59.518 57.143 0.00 0.00 0.00 4.85
135 193 1.481772 CCTTGGAGGAGAGAGAAGCAG 59.518 57.143 0.00 0.00 37.67 4.24
136 194 1.077828 TCCTTGGAGGAGAGAGAAGCA 59.922 52.381 0.00 0.00 40.06 3.91
137 195 1.480545 GTCCTTGGAGGAGAGAGAAGC 59.519 57.143 0.00 0.00 46.90 3.86
138 196 2.813907 TGTCCTTGGAGGAGAGAGAAG 58.186 52.381 0.00 0.00 46.90 2.85
139 197 3.012274 AGATGTCCTTGGAGGAGAGAGAA 59.988 47.826 0.00 0.00 46.90 2.87
140 198 2.584965 AGATGTCCTTGGAGGAGAGAGA 59.415 50.000 0.00 0.00 46.90 3.10
141 199 3.030873 AGATGTCCTTGGAGGAGAGAG 57.969 52.381 0.00 0.00 46.90 3.20
155 213 3.133183 GGGAGACAGAAACCCTAGATGTC 59.867 52.174 0.00 0.00 40.39 3.06
157 215 2.101582 CGGGAGACAGAAACCCTAGATG 59.898 54.545 0.00 0.00 41.28 2.90
159 217 1.076677 ACGGGAGACAGAAACCCTAGA 59.923 52.381 0.00 0.00 41.28 2.43
188 250 0.174389 GAAGAGTGGCAGATCAGCGA 59.826 55.000 3.82 0.00 34.64 4.93
198 260 2.034812 CCTACGACCATAGAAGAGTGGC 59.965 54.545 0.00 0.00 39.13 5.01
329 399 3.744940 ATTCCATCTCCAAGAAGCCAA 57.255 42.857 0.00 0.00 0.00 4.52
340 410 3.244249 CGGGGAGAACCTTATTCCATCTC 60.244 52.174 0.00 0.00 40.03 2.75
414 484 1.208052 CAAGATCCACCGGAGACACAT 59.792 52.381 9.46 0.00 34.05 3.21
450 520 4.322049 CGAGTAGATCCACCAAAGACAACT 60.322 45.833 0.00 0.00 0.00 3.16
486 556 4.600012 AGACACACAAACAAAGACGAAG 57.400 40.909 0.00 0.00 0.00 3.79
500 570 6.175712 GAAGGATTCAATCTGAAGACACAC 57.824 41.667 0.00 0.00 46.62 3.82
543 613 2.203480 AACAGCAACCACCGCCAT 60.203 55.556 0.00 0.00 0.00 4.40
571 641 2.163815 CGTGATAGGGCCCTATAAGACG 59.836 54.545 39.05 36.09 39.15 4.18
609 679 4.573201 GCCAGACACAAGTTGTTGTAGTAA 59.427 41.667 5.57 0.00 45.57 2.24
735 806 8.542497 TTGTAGCACAACGAATACTAGAAATT 57.458 30.769 0.00 0.00 32.34 1.82
951 1028 9.899226 CGTGTGCATGTATATATAGCATACTAT 57.101 33.333 20.24 0.00 42.63 2.12
980 1057 5.910166 GCCATGTACGATCTGATATCGATAC 59.090 44.000 7.41 11.74 43.59 2.24
985 1062 5.739630 CGTTAGCCATGTACGATCTGATATC 59.260 44.000 0.00 0.00 37.47 1.63
986 1063 5.183331 ACGTTAGCCATGTACGATCTGATAT 59.817 40.000 12.00 0.00 38.56 1.63
996 1073 2.597305 CTCGTTGACGTTAGCCATGTAC 59.403 50.000 3.25 0.00 40.80 2.90
1167 1250 1.531912 GATCGACGACTACGGTGTTG 58.468 55.000 0.00 0.00 44.46 3.33
1168 1251 0.095935 CGATCGACGACTACGGTGTT 59.904 55.000 10.26 0.00 45.77 3.32
1461 1544 2.768344 CAGTAGACCCCCGCCCAT 60.768 66.667 0.00 0.00 0.00 4.00
1645 1740 3.554692 GATCGCCGCCGTGAACTG 61.555 66.667 0.00 0.00 35.54 3.16
1876 1971 5.928264 GGAAAGTCGCTAAAGGTACAACTAA 59.072 40.000 0.00 0.00 0.00 2.24
1880 1975 4.339872 TGGAAAGTCGCTAAAGGTACAA 57.660 40.909 0.00 0.00 0.00 2.41
1881 1976 4.546829 ATGGAAAGTCGCTAAAGGTACA 57.453 40.909 0.00 0.00 0.00 2.90
1882 1977 4.501921 CGTATGGAAAGTCGCTAAAGGTAC 59.498 45.833 0.00 0.00 0.00 3.34
1883 1978 4.675510 CGTATGGAAAGTCGCTAAAGGTA 58.324 43.478 0.00 0.00 0.00 3.08
1884 1979 3.518590 CGTATGGAAAGTCGCTAAAGGT 58.481 45.455 0.00 0.00 0.00 3.50
1885 1980 2.284417 GCGTATGGAAAGTCGCTAAAGG 59.716 50.000 0.00 0.00 44.28 3.11
1886 1981 3.570939 GCGTATGGAAAGTCGCTAAAG 57.429 47.619 0.00 0.00 44.28 1.85
1892 1987 4.030134 AGAAGTAGCGTATGGAAAGTCG 57.970 45.455 0.00 0.00 0.00 4.18
1893 1988 5.888105 TGTAGAAGTAGCGTATGGAAAGTC 58.112 41.667 0.00 0.00 0.00 3.01
1894 1989 5.909621 TGTAGAAGTAGCGTATGGAAAGT 57.090 39.130 0.00 0.00 0.00 2.66
1895 1990 5.232414 GCTTGTAGAAGTAGCGTATGGAAAG 59.768 44.000 1.12 0.00 0.00 2.62
1896 1991 5.105473 AGCTTGTAGAAGTAGCGTATGGAAA 60.105 40.000 1.12 0.00 39.82 3.13
1897 1992 4.401519 AGCTTGTAGAAGTAGCGTATGGAA 59.598 41.667 1.12 0.00 39.82 3.53
1898 1993 3.952323 AGCTTGTAGAAGTAGCGTATGGA 59.048 43.478 1.12 0.00 39.82 3.41
1899 1994 4.036971 AGAGCTTGTAGAAGTAGCGTATGG 59.963 45.833 1.12 0.00 39.82 2.74
1900 1995 5.176407 AGAGCTTGTAGAAGTAGCGTATG 57.824 43.478 1.12 0.00 39.82 2.39
1901 1996 5.450688 CCAAGAGCTTGTAGAAGTAGCGTAT 60.451 44.000 9.18 0.00 39.82 3.06
1902 1997 4.142447 CCAAGAGCTTGTAGAAGTAGCGTA 60.142 45.833 9.18 0.00 39.82 4.42
1903 1998 3.367498 CCAAGAGCTTGTAGAAGTAGCGT 60.367 47.826 9.18 0.00 39.82 5.07
1904 1999 3.119459 TCCAAGAGCTTGTAGAAGTAGCG 60.119 47.826 9.18 0.00 39.82 4.26
1905 2000 4.457834 TCCAAGAGCTTGTAGAAGTAGC 57.542 45.455 9.18 0.00 38.85 3.58
1906 2001 9.436957 TTTAAATCCAAGAGCTTGTAGAAGTAG 57.563 33.333 9.18 0.00 38.85 2.57
1907 2002 9.216117 GTTTAAATCCAAGAGCTTGTAGAAGTA 57.784 33.333 9.18 0.00 38.85 2.24
1908 2003 7.719633 TGTTTAAATCCAAGAGCTTGTAGAAGT 59.280 33.333 9.18 0.00 38.85 3.01
1909 2004 8.099364 TGTTTAAATCCAAGAGCTTGTAGAAG 57.901 34.615 9.18 0.00 38.85 2.85
1910 2005 8.458573 TTGTTTAAATCCAAGAGCTTGTAGAA 57.541 30.769 9.18 0.00 38.85 2.10
1911 2006 7.719633 ACTTGTTTAAATCCAAGAGCTTGTAGA 59.280 33.333 19.79 1.35 40.36 2.59
1912 2007 7.875971 ACTTGTTTAAATCCAAGAGCTTGTAG 58.124 34.615 19.79 0.00 40.36 2.74
1913 2008 7.817418 ACTTGTTTAAATCCAAGAGCTTGTA 57.183 32.000 19.79 0.00 40.36 2.41
1914 2009 6.715347 ACTTGTTTAAATCCAAGAGCTTGT 57.285 33.333 19.79 1.18 40.36 3.16
1915 2010 7.517259 GCAAACTTGTTTAAATCCAAGAGCTTG 60.517 37.037 19.79 18.09 40.36 4.01
1916 2011 6.479990 GCAAACTTGTTTAAATCCAAGAGCTT 59.520 34.615 19.79 10.33 40.36 3.74
1917 2012 5.985530 GCAAACTTGTTTAAATCCAAGAGCT 59.014 36.000 19.79 0.00 40.36 4.09
1918 2013 5.985530 AGCAAACTTGTTTAAATCCAAGAGC 59.014 36.000 19.79 18.28 40.36 4.09
1919 2014 8.330302 CAAAGCAAACTTGTTTAAATCCAAGAG 58.670 33.333 19.79 12.33 40.36 2.85
1920 2015 7.201600 GCAAAGCAAACTTGTTTAAATCCAAGA 60.202 33.333 19.79 0.00 40.36 3.02
1921 2016 6.906678 GCAAAGCAAACTTGTTTAAATCCAAG 59.093 34.615 14.02 14.02 42.91 3.61
1922 2017 6.183360 GGCAAAGCAAACTTGTTTAAATCCAA 60.183 34.615 0.00 0.00 35.85 3.53
1923 2018 5.295540 GGCAAAGCAAACTTGTTTAAATCCA 59.704 36.000 0.00 0.00 35.85 3.41
1924 2019 5.558083 CGGCAAAGCAAACTTGTTTAAATCC 60.558 40.000 0.00 0.00 35.85 3.01
1925 2020 5.233263 TCGGCAAAGCAAACTTGTTTAAATC 59.767 36.000 0.00 0.00 35.85 2.17
1926 2021 5.112686 TCGGCAAAGCAAACTTGTTTAAAT 58.887 33.333 0.00 0.00 35.85 1.40
1927 2022 4.495422 TCGGCAAAGCAAACTTGTTTAAA 58.505 34.783 0.00 0.00 35.85 1.52
1928 2023 4.109050 CTCGGCAAAGCAAACTTGTTTAA 58.891 39.130 0.00 0.00 35.85 1.52
1929 2024 3.378742 TCTCGGCAAAGCAAACTTGTTTA 59.621 39.130 0.00 0.00 35.85 2.01
1930 2025 2.165437 TCTCGGCAAAGCAAACTTGTTT 59.835 40.909 0.00 0.00 35.85 2.83
1931 2026 1.748493 TCTCGGCAAAGCAAACTTGTT 59.252 42.857 0.00 0.00 35.85 2.83
1932 2027 1.065551 GTCTCGGCAAAGCAAACTTGT 59.934 47.619 0.00 0.00 35.85 3.16
1933 2028 1.758783 GTCTCGGCAAAGCAAACTTG 58.241 50.000 0.00 0.00 35.85 3.16
1934 2029 0.307760 CGTCTCGGCAAAGCAAACTT 59.692 50.000 0.00 0.00 37.90 2.66
1935 2030 1.507141 CCGTCTCGGCAAAGCAAACT 61.507 55.000 0.00 0.00 41.17 2.66
1936 2031 1.082104 CCGTCTCGGCAAAGCAAAC 60.082 57.895 0.00 0.00 41.17 2.93
1937 2032 3.339731 CCGTCTCGGCAAAGCAAA 58.660 55.556 0.00 0.00 41.17 3.68
1947 2042 2.125512 CTTTGGGCCTCCGTCTCG 60.126 66.667 4.53 0.00 35.24 4.04
1948 2043 2.269241 CCTTTGGGCCTCCGTCTC 59.731 66.667 4.53 0.00 35.24 3.36
1958 2053 2.956987 CTCGTTGCTGCCTTTGGG 59.043 61.111 0.00 0.00 0.00 4.12
1959 2054 2.256461 GCTCGTTGCTGCCTTTGG 59.744 61.111 0.00 0.00 38.95 3.28
2034 2129 4.949856 CCCTGATGCTTAACCTGTATGTTT 59.050 41.667 0.00 0.00 0.00 2.83
2068 2163 0.670546 CATCTCGGACACGCCTTGTT 60.671 55.000 0.00 0.00 39.17 2.83
2100 2195 1.075659 GGGCTGAGCAACCCTTTCT 59.924 57.895 6.82 0.00 43.36 2.52
2126 2221 9.531158 AGTAGTATTATCCCTGTAACATAGACC 57.469 37.037 0.00 0.00 0.00 3.85
2153 2248 1.133637 TGTGCAGGAGCCAAAGGTTTA 60.134 47.619 0.00 0.00 41.13 2.01
2156 2251 0.396974 TTTGTGCAGGAGCCAAAGGT 60.397 50.000 0.00 0.00 41.13 3.50
2188 2283 2.049156 CTGCGCTCCAAGACGACA 60.049 61.111 9.73 0.00 0.00 4.35
2255 2350 1.743995 GTCCATTTGGCGCTACCGT 60.744 57.895 7.64 0.00 43.94 4.83
2260 2355 1.675641 GTCTGGTCCATTTGGCGCT 60.676 57.895 7.64 0.00 34.44 5.92
2305 2400 6.037786 TGGTGACTCAAGATAAAAGACGAT 57.962 37.500 0.00 0.00 0.00 3.73
2414 2509 0.103755 TCTCTCGCATGATCTGGCAC 59.896 55.000 0.00 0.00 0.00 5.01
2450 2545 0.539051 CGGAGACCCTTCAGCATCTT 59.461 55.000 0.00 0.00 0.00 2.40
2474 2569 4.083643 CCTGTTTGTGTGCTATGTTCTCAG 60.084 45.833 0.00 0.00 0.00 3.35
2552 2647 1.482593 CGGTTGATCTACCTTGCCTCT 59.517 52.381 21.61 0.00 35.97 3.69
2587 2682 0.106708 TGATCCACGGCCATCTTAGC 59.893 55.000 2.24 0.00 0.00 3.09
2588 2683 2.213499 GTTGATCCACGGCCATCTTAG 58.787 52.381 2.24 0.00 0.00 2.18
2589 2684 1.472552 CGTTGATCCACGGCCATCTTA 60.473 52.381 11.32 0.00 36.47 2.10
2590 2685 0.744414 CGTTGATCCACGGCCATCTT 60.744 55.000 11.32 0.00 36.47 2.40
2591 2686 1.153369 CGTTGATCCACGGCCATCT 60.153 57.895 11.32 0.00 36.47 2.90
2592 2687 1.153449 TCGTTGATCCACGGCCATC 60.153 57.895 18.14 0.00 40.74 3.51
2593 2688 1.153369 CTCGTTGATCCACGGCCAT 60.153 57.895 18.14 0.00 40.74 4.40
2594 2689 2.264480 CTCGTTGATCCACGGCCA 59.736 61.111 18.14 0.00 40.74 5.36
2595 2690 3.195698 GCTCGTTGATCCACGGCC 61.196 66.667 18.14 6.89 40.74 6.13
2596 2691 1.298859 AAAGCTCGTTGATCCACGGC 61.299 55.000 18.14 18.39 40.74 5.68
2597 2692 0.443869 CAAAGCTCGTTGATCCACGG 59.556 55.000 18.14 10.58 40.74 4.94
2598 2693 0.179215 GCAAAGCTCGTTGATCCACG 60.179 55.000 12.86 12.86 41.78 4.94
2599 2694 1.129437 GAGCAAAGCTCGTTGATCCAC 59.871 52.381 5.29 0.00 45.85 4.02
2600 2695 1.442769 GAGCAAAGCTCGTTGATCCA 58.557 50.000 5.29 0.00 45.85 3.41
2617 2712 1.871676 CCATCATTGATCTGCGGTGAG 59.128 52.381 0.00 0.00 0.00 3.51
2618 2713 1.485895 TCCATCATTGATCTGCGGTGA 59.514 47.619 0.00 0.00 0.00 4.02
2619 2714 1.957668 TCCATCATTGATCTGCGGTG 58.042 50.000 0.00 0.00 0.00 4.94
2620 2715 2.945080 ATCCATCATTGATCTGCGGT 57.055 45.000 0.00 0.00 0.00 5.68
2621 2716 4.259356 ACATATCCATCATTGATCTGCGG 58.741 43.478 0.00 0.00 0.00 5.69
2622 2717 6.759827 TCATACATATCCATCATTGATCTGCG 59.240 38.462 0.00 0.00 0.00 5.18
2623 2718 7.226918 CCTCATACATATCCATCATTGATCTGC 59.773 40.741 0.00 0.00 0.00 4.26
2624 2719 8.265764 ACCTCATACATATCCATCATTGATCTG 58.734 37.037 0.00 0.00 0.00 2.90
2625 2720 8.389979 ACCTCATACATATCCATCATTGATCT 57.610 34.615 0.00 0.00 0.00 2.75
2626 2721 9.761504 CTACCTCATACATATCCATCATTGATC 57.238 37.037 0.00 0.00 0.00 2.92
2627 2722 8.712103 CCTACCTCATACATATCCATCATTGAT 58.288 37.037 0.00 0.00 0.00 2.57
2628 2723 7.126268 CCCTACCTCATACATATCCATCATTGA 59.874 40.741 0.00 0.00 0.00 2.57
2629 2724 7.092712 ACCCTACCTCATACATATCCATCATTG 60.093 40.741 0.00 0.00 0.00 2.82
2630 2725 6.968248 ACCCTACCTCATACATATCCATCATT 59.032 38.462 0.00 0.00 0.00 2.57
2631 2726 6.515779 ACCCTACCTCATACATATCCATCAT 58.484 40.000 0.00 0.00 0.00 2.45
2632 2727 5.915628 ACCCTACCTCATACATATCCATCA 58.084 41.667 0.00 0.00 0.00 3.07
2633 2728 7.472100 GCATACCCTACCTCATACATATCCATC 60.472 44.444 0.00 0.00 0.00 3.51
2634 2729 6.327626 GCATACCCTACCTCATACATATCCAT 59.672 42.308 0.00 0.00 0.00 3.41
2635 2730 5.661312 GCATACCCTACCTCATACATATCCA 59.339 44.000 0.00 0.00 0.00 3.41
2636 2731 5.221263 CGCATACCCTACCTCATACATATCC 60.221 48.000 0.00 0.00 0.00 2.59
2637 2732 5.360144 ACGCATACCCTACCTCATACATATC 59.640 44.000 0.00 0.00 0.00 1.63
2638 2733 5.269991 ACGCATACCCTACCTCATACATAT 58.730 41.667 0.00 0.00 0.00 1.78
2639 2734 4.669700 ACGCATACCCTACCTCATACATA 58.330 43.478 0.00 0.00 0.00 2.29
2640 2735 3.507411 ACGCATACCCTACCTCATACAT 58.493 45.455 0.00 0.00 0.00 2.29
2641 2736 2.953453 ACGCATACCCTACCTCATACA 58.047 47.619 0.00 0.00 0.00 2.29
2642 2737 4.461781 ACATACGCATACCCTACCTCATAC 59.538 45.833 0.00 0.00 0.00 2.39
2643 2738 4.669700 ACATACGCATACCCTACCTCATA 58.330 43.478 0.00 0.00 0.00 2.15
2644 2739 3.507411 ACATACGCATACCCTACCTCAT 58.493 45.455 0.00 0.00 0.00 2.90
2645 2740 2.953453 ACATACGCATACCCTACCTCA 58.047 47.619 0.00 0.00 0.00 3.86
2646 2741 4.703575 TCATACATACGCATACCCTACCTC 59.296 45.833 0.00 0.00 0.00 3.85
2647 2742 4.669700 TCATACATACGCATACCCTACCT 58.330 43.478 0.00 0.00 0.00 3.08
2648 2743 5.105473 ACATCATACATACGCATACCCTACC 60.105 44.000 0.00 0.00 0.00 3.18
2649 2744 5.962433 ACATCATACATACGCATACCCTAC 58.038 41.667 0.00 0.00 0.00 3.18
2650 2745 5.949952 AGACATCATACATACGCATACCCTA 59.050 40.000 0.00 0.00 0.00 3.53
2651 2746 4.772624 AGACATCATACATACGCATACCCT 59.227 41.667 0.00 0.00 0.00 4.34
2652 2747 4.864806 CAGACATCATACATACGCATACCC 59.135 45.833 0.00 0.00 0.00 3.69
2653 2748 5.470368 ACAGACATCATACATACGCATACC 58.530 41.667 0.00 0.00 0.00 2.73
2654 2749 6.527023 GGTACAGACATCATACATACGCATAC 59.473 42.308 0.00 0.00 0.00 2.39
2655 2750 6.617879 GGTACAGACATCATACATACGCATA 58.382 40.000 0.00 0.00 0.00 3.14
2656 2751 5.470368 GGTACAGACATCATACATACGCAT 58.530 41.667 0.00 0.00 0.00 4.73
2657 2752 4.555906 CGGTACAGACATCATACATACGCA 60.556 45.833 0.00 0.00 0.00 5.24
2658 2753 3.912563 CGGTACAGACATCATACATACGC 59.087 47.826 0.00 0.00 0.00 4.42
2659 2754 4.909880 CACGGTACAGACATCATACATACG 59.090 45.833 0.00 0.00 0.00 3.06
2660 2755 5.828747 ACACGGTACAGACATCATACATAC 58.171 41.667 0.00 0.00 0.00 2.39
2661 2756 6.459670 AACACGGTACAGACATCATACATA 57.540 37.500 0.00 0.00 0.00 2.29
2662 2757 5.339008 AACACGGTACAGACATCATACAT 57.661 39.130 0.00 0.00 0.00 2.29
2663 2758 4.794278 AACACGGTACAGACATCATACA 57.206 40.909 0.00 0.00 0.00 2.29
2664 2759 7.585286 TTTAAACACGGTACAGACATCATAC 57.415 36.000 0.00 0.00 0.00 2.39
2665 2760 8.604640 TTTTTAAACACGGTACAGACATCATA 57.395 30.769 0.00 0.00 0.00 2.15
2666 2761 7.499321 TTTTTAAACACGGTACAGACATCAT 57.501 32.000 0.00 0.00 0.00 2.45
2667 2762 6.922247 TTTTTAAACACGGTACAGACATCA 57.078 33.333 0.00 0.00 0.00 3.07
2691 2786 4.438148 CTTCCGTGTTGGGTTTCATTTTT 58.562 39.130 0.00 0.00 38.76 1.94
2692 2787 3.739830 GCTTCCGTGTTGGGTTTCATTTT 60.740 43.478 0.00 0.00 38.76 1.82
2693 2788 2.223947 GCTTCCGTGTTGGGTTTCATTT 60.224 45.455 0.00 0.00 38.76 2.32
2694 2789 1.339929 GCTTCCGTGTTGGGTTTCATT 59.660 47.619 0.00 0.00 38.76 2.57
2695 2790 0.958822 GCTTCCGTGTTGGGTTTCAT 59.041 50.000 0.00 0.00 38.76 2.57
2696 2791 0.106918 AGCTTCCGTGTTGGGTTTCA 60.107 50.000 0.00 0.00 38.76 2.69
2697 2792 1.001706 GAAGCTTCCGTGTTGGGTTTC 60.002 52.381 15.97 0.00 38.76 2.78
2698 2793 1.029681 GAAGCTTCCGTGTTGGGTTT 58.970 50.000 15.97 0.00 38.76 3.27
2699 2794 0.106918 TGAAGCTTCCGTGTTGGGTT 60.107 50.000 23.42 0.00 38.76 4.11
2700 2795 0.110486 ATGAAGCTTCCGTGTTGGGT 59.890 50.000 23.42 0.00 38.76 4.51
2701 2796 1.068333 CAATGAAGCTTCCGTGTTGGG 60.068 52.381 23.42 1.36 38.76 4.12
2702 2797 1.068333 CCAATGAAGCTTCCGTGTTGG 60.068 52.381 23.42 23.53 40.09 3.77
2703 2798 1.068333 CCCAATGAAGCTTCCGTGTTG 60.068 52.381 23.42 19.62 0.00 3.33
2704 2799 1.247567 CCCAATGAAGCTTCCGTGTT 58.752 50.000 23.42 10.27 0.00 3.32
2705 2800 1.244019 GCCCAATGAAGCTTCCGTGT 61.244 55.000 23.42 4.58 0.00 4.49
2706 2801 1.508088 GCCCAATGAAGCTTCCGTG 59.492 57.895 23.42 19.21 0.00 4.94
2707 2802 2.040544 CGCCCAATGAAGCTTCCGT 61.041 57.895 23.42 9.69 0.00 4.69
2708 2803 2.764314 CCGCCCAATGAAGCTTCCG 61.764 63.158 23.42 17.04 0.00 4.30
2709 2804 2.418083 CCCGCCCAATGAAGCTTCC 61.418 63.158 23.42 6.06 0.00 3.46
2710 2805 1.657751 GACCCGCCCAATGAAGCTTC 61.658 60.000 19.89 19.89 0.00 3.86
2711 2806 1.678970 GACCCGCCCAATGAAGCTT 60.679 57.895 0.00 0.00 0.00 3.74
2712 2807 2.044946 GACCCGCCCAATGAAGCT 60.045 61.111 0.00 0.00 0.00 3.74
2713 2808 3.140814 GGACCCGCCCAATGAAGC 61.141 66.667 0.00 0.00 0.00 3.86
2714 2809 2.046285 GTGGACCCGCCCAATGAAG 61.046 63.158 0.00 0.00 38.06 3.02
2715 2810 2.034999 GTGGACCCGCCCAATGAA 59.965 61.111 0.00 0.00 38.06 2.57
2716 2811 2.933287 AGTGGACCCGCCCAATGA 60.933 61.111 0.00 0.00 38.06 2.57
2717 2812 2.751436 CAGTGGACCCGCCCAATG 60.751 66.667 0.00 0.00 44.34 2.82
2718 2813 3.256960 ACAGTGGACCCGCCCAAT 61.257 61.111 0.00 0.00 38.06 3.16
2719 2814 4.263572 CACAGTGGACCCGCCCAA 62.264 66.667 0.00 0.00 38.06 4.12
2722 2817 4.250305 ACACACAGTGGACCCGCC 62.250 66.667 5.31 0.00 37.94 6.13
2723 2818 2.665185 GACACACAGTGGACCCGC 60.665 66.667 5.31 0.00 37.94 6.13
2724 2819 2.355837 CGACACACAGTGGACCCG 60.356 66.667 5.31 0.00 37.94 5.28
2725 2820 2.665185 GCGACACACAGTGGACCC 60.665 66.667 5.31 0.00 37.94 4.46
2726 2821 3.036084 CGCGACACACAGTGGACC 61.036 66.667 0.00 0.00 37.94 4.46
2727 2822 3.702555 GCGCGACACACAGTGGAC 61.703 66.667 12.10 0.00 37.94 4.02
2745 2840 1.851984 GAGTTTCAAAACACGCGCGC 61.852 55.000 32.58 23.91 41.30 6.86
2746 2841 1.259544 GGAGTTTCAAAACACGCGCG 61.260 55.000 30.96 30.96 41.30 6.86
2747 2842 0.933047 GGGAGTTTCAAAACACGCGC 60.933 55.000 5.73 0.00 41.30 6.86
2748 2843 3.157922 GGGAGTTTCAAAACACGCG 57.842 52.632 3.53 3.53 41.30 6.01
2749 2844 0.379316 ACGGGAGTTTCAAAACACGC 59.621 50.000 8.23 8.73 43.33 5.34
2762 2857 1.202245 CCAACAAACACACAACGGGAG 60.202 52.381 0.00 0.00 0.00 4.30
2763 2858 0.811915 CCAACAAACACACAACGGGA 59.188 50.000 0.00 0.00 0.00 5.14
2764 2859 0.811915 TCCAACAAACACACAACGGG 59.188 50.000 0.00 0.00 0.00 5.28
2765 2860 2.525055 CTTCCAACAAACACACAACGG 58.475 47.619 0.00 0.00 0.00 4.44
2766 2861 2.162608 TCCTTCCAACAAACACACAACG 59.837 45.455 0.00 0.00 0.00 4.10
2767 2862 3.859411 TCCTTCCAACAAACACACAAC 57.141 42.857 0.00 0.00 0.00 3.32
2768 2863 4.464244 TGATTCCTTCCAACAAACACACAA 59.536 37.500 0.00 0.00 0.00 3.33
2769 2864 4.019858 TGATTCCTTCCAACAAACACACA 58.980 39.130 0.00 0.00 0.00 3.72
2770 2865 4.647424 TGATTCCTTCCAACAAACACAC 57.353 40.909 0.00 0.00 0.00 3.82
2771 2866 4.142049 GGTTGATTCCTTCCAACAAACACA 60.142 41.667 0.00 0.00 43.11 3.72
2772 2867 4.142049 TGGTTGATTCCTTCCAACAAACAC 60.142 41.667 0.00 0.00 43.11 3.32
2773 2868 4.026744 TGGTTGATTCCTTCCAACAAACA 58.973 39.130 0.00 0.00 43.11 2.83
2774 2869 4.368315 GTGGTTGATTCCTTCCAACAAAC 58.632 43.478 0.00 0.00 43.11 2.93
2775 2870 3.067461 CGTGGTTGATTCCTTCCAACAAA 59.933 43.478 0.00 0.00 43.11 2.83
2776 2871 2.621055 CGTGGTTGATTCCTTCCAACAA 59.379 45.455 0.00 0.00 43.11 2.83
2777 2872 2.226330 CGTGGTTGATTCCTTCCAACA 58.774 47.619 0.00 0.00 43.11 3.33
2778 2873 2.227194 ACGTGGTTGATTCCTTCCAAC 58.773 47.619 0.00 0.00 41.24 3.77
2779 2874 2.621055 CAACGTGGTTGATTCCTTCCAA 59.379 45.455 2.40 0.00 45.28 3.53
2780 2875 2.226330 CAACGTGGTTGATTCCTTCCA 58.774 47.619 2.40 0.00 45.28 3.53
2781 2876 2.031157 CACAACGTGGTTGATTCCTTCC 60.031 50.000 14.79 0.00 45.28 3.46
2782 2877 2.616842 ACACAACGTGGTTGATTCCTTC 59.383 45.455 14.79 0.00 45.28 3.46
2783 2878 2.650322 ACACAACGTGGTTGATTCCTT 58.350 42.857 14.79 0.00 45.28 3.36
2784 2879 2.341846 ACACAACGTGGTTGATTCCT 57.658 45.000 14.79 0.00 45.28 3.36
2785 2880 2.096614 CGTACACAACGTGGTTGATTCC 60.097 50.000 14.79 0.66 45.28 3.01
2786 2881 3.163642 CGTACACAACGTGGTTGATTC 57.836 47.619 14.79 1.16 45.28 2.52
2797 2892 2.084681 CGAGCCGGACGTACACAAC 61.085 63.158 5.05 0.00 0.00 3.32
2798 2893 2.256158 CGAGCCGGACGTACACAA 59.744 61.111 5.05 0.00 0.00 3.33
2809 2904 3.921021 GTGATGTATTCTAATCCGAGCCG 59.079 47.826 0.00 0.00 0.00 5.52
2810 2905 4.883083 TGTGATGTATTCTAATCCGAGCC 58.117 43.478 0.00 0.00 0.00 4.70
2811 2906 5.773575 TCTGTGATGTATTCTAATCCGAGC 58.226 41.667 0.00 0.00 0.00 5.03
2812 2907 8.706936 CAAATCTGTGATGTATTCTAATCCGAG 58.293 37.037 0.00 0.00 0.00 4.63
2813 2908 7.657354 CCAAATCTGTGATGTATTCTAATCCGA 59.343 37.037 0.00 0.00 0.00 4.55
2814 2909 7.657354 TCCAAATCTGTGATGTATTCTAATCCG 59.343 37.037 0.00 0.00 0.00 4.18
2815 2910 8.908786 TCCAAATCTGTGATGTATTCTAATCC 57.091 34.615 0.00 0.00 0.00 3.01
2819 2914 9.685276 ACAATTCCAAATCTGTGATGTATTCTA 57.315 29.630 0.00 0.00 0.00 2.10
2820 2915 8.585471 ACAATTCCAAATCTGTGATGTATTCT 57.415 30.769 0.00 0.00 0.00 2.40
2825 2920 9.466497 AGTAATACAATTCCAAATCTGTGATGT 57.534 29.630 0.00 0.00 0.00 3.06
2826 2921 9.726232 CAGTAATACAATTCCAAATCTGTGATG 57.274 33.333 0.00 0.00 0.00 3.07
2827 2922 8.906867 CCAGTAATACAATTCCAAATCTGTGAT 58.093 33.333 0.00 0.00 0.00 3.06
2828 2923 7.888021 ACCAGTAATACAATTCCAAATCTGTGA 59.112 33.333 0.00 0.00 0.00 3.58
2829 2924 8.055279 ACCAGTAATACAATTCCAAATCTGTG 57.945 34.615 0.00 0.00 0.00 3.66
2830 2925 9.396022 CTACCAGTAATACAATTCCAAATCTGT 57.604 33.333 0.00 0.00 0.00 3.41
2831 2926 8.840321 CCTACCAGTAATACAATTCCAAATCTG 58.160 37.037 0.00 0.00 0.00 2.90
2832 2927 8.778059 TCCTACCAGTAATACAATTCCAAATCT 58.222 33.333 0.00 0.00 0.00 2.40
2833 2928 8.974060 TCCTACCAGTAATACAATTCCAAATC 57.026 34.615 0.00 0.00 0.00 2.17
2834 2929 9.408648 CTTCCTACCAGTAATACAATTCCAAAT 57.591 33.333 0.00 0.00 0.00 2.32
2835 2930 7.338449 GCTTCCTACCAGTAATACAATTCCAAA 59.662 37.037 0.00 0.00 0.00 3.28
2836 2931 6.826741 GCTTCCTACCAGTAATACAATTCCAA 59.173 38.462 0.00 0.00 0.00 3.53
2837 2932 6.157994 AGCTTCCTACCAGTAATACAATTCCA 59.842 38.462 0.00 0.00 0.00 3.53
2838 2933 6.592870 AGCTTCCTACCAGTAATACAATTCC 58.407 40.000 0.00 0.00 0.00 3.01
2842 2937 9.650714 TCTTATAGCTTCCTACCAGTAATACAA 57.349 33.333 0.00 0.00 0.00 2.41
2843 2938 9.824216 ATCTTATAGCTTCCTACCAGTAATACA 57.176 33.333 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.