Multiple sequence alignment - TraesCS5B01G008900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G008900 chr5B 100.000 5359 0 0 1 5359 9268212 9262854 0.000000e+00 9897
1 TraesCS5B01G008900 chr5A 91.555 3292 187 35 1314 4575 7365881 7362651 0.000000e+00 4455
2 TraesCS5B01G008900 chr5A 90.113 799 45 15 536 1301 7366780 7365983 0.000000e+00 1007
3 TraesCS5B01G008900 chr5A 91.954 435 21 3 4926 5359 7362211 7361790 9.930000e-167 597
4 TraesCS5B01G008900 chr5A 89.931 288 24 4 4569 4854 7362624 7362340 3.050000e-97 366
5 TraesCS5B01G008900 chr5D 90.307 2053 117 49 536 2577 9125970 9123989 0.000000e+00 2614
6 TraesCS5B01G008900 chr5D 89.166 1643 84 29 3261 4854 9123162 9121565 0.000000e+00 1962
7 TraesCS5B01G008900 chr5D 95.035 705 22 7 2573 3274 9123898 9123204 0.000000e+00 1096
8 TraesCS5B01G008900 chr5D 88.785 535 57 3 1 533 477840660 477841193 0.000000e+00 652
9 TraesCS5B01G008900 chr5D 88.091 529 60 3 4 531 102028654 102028128 4.560000e-175 625
10 TraesCS5B01G008900 chr5D 87.664 535 61 4 1 533 6509212 6508681 7.630000e-173 617
11 TraesCS5B01G008900 chr5D 88.425 527 30 13 4850 5357 9121535 9121021 1.650000e-169 606
12 TraesCS5B01G008900 chr5D 95.582 249 8 2 982 1229 533372249 533372003 3.890000e-106 396
13 TraesCS5B01G008900 chr5D 95.181 249 9 2 982 1229 23229817 23230063 1.810000e-104 390
14 TraesCS5B01G008900 chr5D 96.364 110 4 0 1500 1609 533371906 533371797 1.190000e-41 182
15 TraesCS5B01G008900 chr5D 95.455 110 5 0 1500 1609 23230160 23230269 5.520000e-40 176
16 TraesCS5B01G008900 chr3D 94.561 570 26 3 1379 1948 270304356 270303792 0.000000e+00 876
17 TraesCS5B01G008900 chr3D 91.318 622 32 9 3409 4017 270303794 270303182 0.000000e+00 830
18 TraesCS5B01G008900 chr3D 88.246 536 56 6 1 534 21373205 21372675 7.570000e-178 634
19 TraesCS5B01G008900 chr3D 93.391 348 18 2 1379 1726 583653391 583653733 1.330000e-140 510
20 TraesCS5B01G008900 chr3D 95.582 249 8 2 982 1229 11016011 11015765 3.890000e-106 396
21 TraesCS5B01G008900 chr3D 95.582 249 8 2 982 1229 21932089 21932335 3.890000e-106 396
22 TraesCS5B01G008900 chr3D 95.582 249 8 2 982 1229 576282037 576282283 3.890000e-106 396
23 TraesCS5B01G008900 chr3D 96.364 110 4 0 1500 1609 11015668 11015559 1.190000e-41 182
24 TraesCS5B01G008900 chr3D 96.364 110 4 0 1500 1609 21932432 21932541 1.190000e-41 182
25 TraesCS5B01G008900 chr3D 95.455 110 5 0 1500 1609 576282380 576282489 5.520000e-40 176
26 TraesCS5B01G008900 chr1D 88.662 538 56 5 1 535 491945202 491944667 0.000000e+00 651
27 TraesCS5B01G008900 chr1D 86.517 534 70 2 1 533 216045197 216044665 2.150000e-163 586
28 TraesCS5B01G008900 chr6D 88.015 534 61 3 1 533 68685880 68685349 3.520000e-176 628
29 TraesCS5B01G008900 chr6D 86.567 536 69 3 1 535 8168822 8169355 5.980000e-164 588
30 TraesCS5B01G008900 chr2D 87.382 531 61 6 3 530 90368407 90367880 5.940000e-169 604
31 TraesCS5B01G008900 chr2D 91.349 289 11 6 953 1229 40486714 40487000 3.030000e-102 383
32 TraesCS5B01G008900 chr4D 92.042 289 9 6 953 1229 288956889 288956603 1.400000e-105 394
33 TraesCS5B01G008900 chr4D 91.696 289 10 3 953 1229 247758681 247758395 6.510000e-104 388
34 TraesCS5B01G008900 chr4D 91.003 289 12 6 953 1229 168757620 168757906 1.410000e-100 377


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G008900 chr5B 9262854 9268212 5358 True 9897.00 9897 100.00000 1 5359 1 chr5B.!!$R1 5358
1 TraesCS5B01G008900 chr5A 7361790 7366780 4990 True 1606.25 4455 90.88825 536 5359 4 chr5A.!!$R1 4823
2 TraesCS5B01G008900 chr5D 9121021 9125970 4949 True 1569.50 2614 90.73325 536 5357 4 chr5D.!!$R3 4821
3 TraesCS5B01G008900 chr5D 477840660 477841193 533 False 652.00 652 88.78500 1 533 1 chr5D.!!$F1 532
4 TraesCS5B01G008900 chr5D 102028128 102028654 526 True 625.00 625 88.09100 4 531 1 chr5D.!!$R2 527
5 TraesCS5B01G008900 chr5D 6508681 6509212 531 True 617.00 617 87.66400 1 533 1 chr5D.!!$R1 532
6 TraesCS5B01G008900 chr3D 270303182 270304356 1174 True 853.00 876 92.93950 1379 4017 2 chr3D.!!$R3 2638
7 TraesCS5B01G008900 chr3D 21372675 21373205 530 True 634.00 634 88.24600 1 534 1 chr3D.!!$R1 533
8 TraesCS5B01G008900 chr1D 491944667 491945202 535 True 651.00 651 88.66200 1 535 1 chr1D.!!$R2 534
9 TraesCS5B01G008900 chr1D 216044665 216045197 532 True 586.00 586 86.51700 1 533 1 chr1D.!!$R1 532
10 TraesCS5B01G008900 chr6D 68685349 68685880 531 True 628.00 628 88.01500 1 533 1 chr6D.!!$R1 532
11 TraesCS5B01G008900 chr6D 8168822 8169355 533 False 588.00 588 86.56700 1 535 1 chr6D.!!$F1 534
12 TraesCS5B01G008900 chr2D 90367880 90368407 527 True 604.00 604 87.38200 3 530 1 chr2D.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.526524 GTCGGCATCGTCTTCCTCTG 60.527 60.0 0.00 0.00 37.69 3.35 F
418 427 0.824182 AATCGTCGGGCCCAAAAACA 60.824 50.0 24.92 0.00 0.00 2.83 F
2051 2202 0.099613 TGTGACGCGCAAACAATTGT 59.900 45.0 5.73 4.92 38.85 2.71 F
2757 3010 0.800012 TACCTGAAAACGCCAATCGC 59.200 50.0 0.00 0.00 43.23 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 1698 0.389166 GCTCCTCCATTATCCGCGAG 60.389 60.0 8.23 0.0 0.00 5.03 R
2077 2232 0.105778 GGCAGCAGAGTATGGTCTCC 59.894 60.0 0.00 0.0 37.60 3.71 R
3738 4059 0.823356 GTTTCTTGCTGGTCAGGGCA 60.823 55.0 0.00 0.0 36.62 5.36 R
4519 4843 0.042431 ACTCAGCCTCCTCTCCACAT 59.958 55.0 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.526524 GTCGGCATCGTCTTCCTCTG 60.527 60.000 0.00 0.00 37.69 3.35
53 54 4.117661 GAGCGCCTCCTCGTCGTT 62.118 66.667 2.29 0.00 0.00 3.85
78 79 1.421485 CATCGCCGAGCAGACAAAC 59.579 57.895 0.00 0.00 0.00 2.93
81 82 2.357034 GCCGAGCAGACAAACCGA 60.357 61.111 0.00 0.00 0.00 4.69
162 163 1.500512 CGTCGGAAAACTCGCCCAAA 61.501 55.000 0.00 0.00 0.00 3.28
163 164 0.879090 GTCGGAAAACTCGCCCAAAT 59.121 50.000 0.00 0.00 0.00 2.32
228 231 1.362224 GGGGAATGGCCTATCTAGCA 58.638 55.000 3.32 0.00 36.66 3.49
307 312 1.070289 GGGGGCGAATCTAGACGATTT 59.930 52.381 6.92 0.00 42.31 2.17
325 330 1.604604 TTCCTTGACTTTTCGCCTGG 58.395 50.000 0.00 0.00 0.00 4.45
345 350 3.064324 GTGTGGCCCAGGCATGTC 61.064 66.667 11.50 0.00 44.11 3.06
404 413 2.746277 GGTTCGGCCTGCAATCGT 60.746 61.111 0.00 0.00 0.00 3.73
418 427 0.824182 AATCGTCGGGCCCAAAAACA 60.824 50.000 24.92 0.00 0.00 2.83
459 468 3.303135 TCTTGAGGGCGCGACTGT 61.303 61.111 13.91 0.00 0.00 3.55
460 469 2.357517 CTTGAGGGCGCGACTGTT 60.358 61.111 13.91 0.00 0.00 3.16
539 553 5.527951 CGACTGGAGATGCTCTAACTACTAA 59.472 44.000 0.00 0.00 0.00 2.24
559 573 9.852091 CTACTAATAACCTTACATACGGATTCC 57.148 37.037 0.00 0.00 0.00 3.01
609 623 8.792831 AACATTCTAATCGCATTTGATTGATC 57.207 30.769 14.94 0.00 38.92 2.92
620 634 8.193438 TCGCATTTGATTGATCGATATCTAGAT 58.807 33.333 10.73 10.73 32.93 1.98
632 646 7.880059 TCGATATCTAGATGTTGATGCAAAG 57.120 36.000 15.79 0.00 0.00 2.77
637 651 2.937591 AGATGTTGATGCAAAGCAACG 58.062 42.857 19.06 0.00 45.47 4.10
658 672 7.006742 GCAACGAACGAAAATACGTATTTGAAT 59.993 33.333 29.06 16.80 45.83 2.57
671 685 5.561125 ACGTATTTGAATTTTGCGTTCGTAC 59.439 36.000 0.00 0.00 0.00 3.67
685 699 5.163864 TGCGTTCGTACTCGTTTATAGAGAA 60.164 40.000 0.00 0.00 38.97 2.87
687 701 6.249260 GCGTTCGTACTCGTTTATAGAGAAAA 59.751 38.462 0.00 0.00 38.97 2.29
760 780 1.697754 CAGGCCCTTATCCCCCACT 60.698 63.158 0.00 0.00 0.00 4.00
859 888 3.412408 GCCCTCCTCTTCCCCACC 61.412 72.222 0.00 0.00 0.00 4.61
1215 1267 1.634702 CACACAAACCAAAACCACCG 58.365 50.000 0.00 0.00 0.00 4.94
1260 1312 5.283717 GCATTTTCTTGCTTACGTGTGTATG 59.716 40.000 0.00 0.00 39.57 2.39
1277 1329 7.516785 CGTGTGTATGTGGCTATGTTCTAAATC 60.517 40.741 0.00 0.00 0.00 2.17
1317 1464 7.872881 CAGCTATGCAATTGATTCATCTTAGT 58.127 34.615 10.34 0.00 0.00 2.24
1332 1479 6.333416 TCATCTTAGTGCTAGCAAACTACAG 58.667 40.000 21.29 15.55 0.00 2.74
1334 1481 5.710984 TCTTAGTGCTAGCAAACTACAGTC 58.289 41.667 21.29 3.28 0.00 3.51
1338 1485 1.404315 GCTAGCAAACTACAGTCGGCT 60.404 52.381 10.63 11.12 39.54 5.52
1396 1543 4.177026 CAGTAGTAGTTCTGTGATGCACC 58.823 47.826 0.00 0.00 32.73 5.01
1404 1551 4.637534 AGTTCTGTGATGCACCACATATTC 59.362 41.667 15.94 6.06 44.93 1.75
1459 1606 1.646189 GCTCCTTCATGACCGTTCTC 58.354 55.000 0.00 0.00 0.00 2.87
1463 1610 1.338105 CCTTCATGACCGTTCTCTGCA 60.338 52.381 0.00 0.00 0.00 4.41
1473 1620 2.323959 CGTTCTCTGCAACTCTCTGTC 58.676 52.381 0.00 0.00 0.00 3.51
1551 1698 2.218953 TTGCTATGCACTACCTACGC 57.781 50.000 0.00 0.00 38.71 4.42
1656 1803 2.239681 ACGAGACCTGGGAGAAGATT 57.760 50.000 0.00 0.00 0.00 2.40
1683 1833 4.386867 TCTGAGTATGATTCCGTGGTTC 57.613 45.455 0.00 0.00 0.00 3.62
1689 1839 2.293677 TGATTCCGTGGTTCATCTCG 57.706 50.000 0.00 0.00 0.00 4.04
1722 1872 5.722021 TGGCCTGTTTATTTTCTTCTTCC 57.278 39.130 3.32 0.00 0.00 3.46
1745 1895 4.630505 CCTGTCTCATCTGTGATGTCAAAG 59.369 45.833 7.33 0.00 32.98 2.77
1777 1927 6.441093 TGCTGATTCCATGTCATTTAACTC 57.559 37.500 0.00 0.00 0.00 3.01
1796 1946 9.978044 TTTAACTCTTGTTACTTCTTCTCTACC 57.022 33.333 0.00 0.00 38.26 3.18
1945 2095 3.505680 TGCTCAATTGCAGGTAAATTCGT 59.494 39.130 0.00 0.00 38.12 3.85
1947 2097 4.379394 GCTCAATTGCAGGTAAATTCGTGA 60.379 41.667 0.00 0.00 0.00 4.35
2041 2192 2.147749 CATTGCACATGTGACGCGC 61.148 57.895 29.80 13.96 0.00 6.86
2051 2202 0.099613 TGTGACGCGCAAACAATTGT 59.900 45.000 5.73 4.92 38.85 2.71
2064 2219 7.600039 CGCAAACAATTGTATTATGCTACAAC 58.400 34.615 23.97 6.72 42.63 3.32
2086 2241 2.832129 GGTGACTTCACTGGAGACCATA 59.168 50.000 9.20 0.00 45.73 2.74
2245 2400 2.803956 GCAACATGCTGCAACAGAAATT 59.196 40.909 16.08 0.00 42.17 1.82
2323 2481 9.586150 GTCAGTAAATTATCATATTCAACAGCG 57.414 33.333 0.00 0.00 0.00 5.18
2421 2579 5.826643 ACAAAATCCCTTTATGGCAGAGTA 58.173 37.500 0.00 0.00 0.00 2.59
2469 2627 1.815757 TCATTTAGAGTAGGGGCCCC 58.184 55.000 35.90 35.90 0.00 5.80
2486 2644 2.289569 GCCCCTTTGATCATTGTTGCAA 60.290 45.455 0.00 0.00 0.00 4.08
2488 2646 3.328505 CCCTTTGATCATTGTTGCAACC 58.671 45.455 26.14 10.45 0.00 3.77
2557 2715 5.354234 CGCCAAGTGTATACTTCCTCATTTT 59.646 40.000 1.29 0.00 45.12 1.82
2622 2875 6.134535 ACTGATACTACCATGGGAAAAACA 57.865 37.500 18.09 8.52 0.00 2.83
2666 2919 4.564406 CCCTATGAGCATGGACCAAGTATC 60.564 50.000 0.00 0.00 0.00 2.24
2757 3010 0.800012 TACCTGAAAACGCCAATCGC 59.200 50.000 0.00 0.00 43.23 4.58
2856 3109 2.283617 GCTAATGACTGAGACACGCATG 59.716 50.000 0.00 0.00 0.00 4.06
2897 3150 9.882996 ATGCAGAATATGTATTGTAAATTCACG 57.117 29.630 0.00 0.00 28.55 4.35
2934 3187 8.333186 GGTTTAGTAATACTGTAATTTGCTCCG 58.667 37.037 2.68 0.00 0.00 4.63
2973 3226 7.290014 TGTCTTAGATCTTTCATATGGCTACCA 59.710 37.037 0.00 0.00 38.19 3.25
3146 3399 1.888512 CAAGGTGGTGCTGCAGTAAAT 59.111 47.619 16.64 0.00 0.00 1.40
3148 3401 2.597455 AGGTGGTGCTGCAGTAAATTT 58.403 42.857 16.64 0.00 0.00 1.82
3149 3402 2.965147 AGGTGGTGCTGCAGTAAATTTT 59.035 40.909 16.64 0.00 0.00 1.82
3150 3403 3.005791 AGGTGGTGCTGCAGTAAATTTTC 59.994 43.478 16.64 0.00 0.00 2.29
3182 3435 8.996271 CAGTAACATACTCATACATGATGCATT 58.004 33.333 0.00 0.00 36.76 3.56
3207 3460 7.321153 TGTTCTTATGAAGAGGTTACTACTGC 58.679 38.462 0.00 0.00 39.03 4.40
3310 3621 0.802494 GCCAGTTGTACCATTCCGTG 59.198 55.000 0.00 0.00 0.00 4.94
3451 3762 9.359653 CAGAGGGGATAATTTGAATTGATAACT 57.640 33.333 0.00 0.00 0.00 2.24
3464 3775 4.970662 TTGATAACTGGCAATTCTGAGC 57.029 40.909 0.00 0.00 0.00 4.26
3471 3782 2.426842 GGCAATTCTGAGCCCTAACT 57.573 50.000 0.00 0.00 45.18 2.24
3510 3821 6.647334 TCATTCAAAATTTGTGCTCCAGTA 57.353 33.333 5.56 0.00 0.00 2.74
3541 3852 8.417106 TGCAAAACTGTCTGGTATAAAATTTGA 58.583 29.630 0.00 0.00 0.00 2.69
3594 3905 9.674824 GAATGACCTCATTTTTCTTATAGCATG 57.325 33.333 2.08 0.00 45.72 4.06
3609 3920 9.098355 TCTTATAGCATGAACTGTTATTGACAC 57.902 33.333 0.00 0.00 33.75 3.67
3622 3933 0.938713 TTGACACGTTTTGTAGGCCG 59.061 50.000 0.00 0.00 39.17 6.13
3669 3990 8.094798 TGTTTGATTGTTATAGTGGAGTTGTC 57.905 34.615 0.00 0.00 0.00 3.18
3707 4028 8.607441 TGTAGATGATAGTTAATTGTCCATGC 57.393 34.615 0.00 0.00 0.00 4.06
3713 4034 8.310406 TGATAGTTAATTGTCCATGCTTATCG 57.690 34.615 0.00 0.00 0.00 2.92
3714 4035 5.424121 AGTTAATTGTCCATGCTTATCGC 57.576 39.130 0.00 0.00 39.77 4.58
3716 4037 3.976793 AATTGTCCATGCTTATCGCTG 57.023 42.857 0.00 0.00 40.11 5.18
3718 4039 2.916702 TGTCCATGCTTATCGCTGAT 57.083 45.000 0.00 0.00 40.11 2.90
3738 4059 6.238484 GCTGATAATCTGAATTGCTAAACGGT 60.238 38.462 0.00 0.00 0.00 4.83
3762 4083 1.528586 CTGACCAGCAAGAAACTGACG 59.471 52.381 0.00 0.00 37.32 4.35
3800 4121 8.301730 TGTGTTCCAGTTTATTAGTAGAAACG 57.698 34.615 4.84 0.00 39.75 3.60
3895 4217 5.443185 ACTGTTGTTGACATGATTTGAGG 57.557 39.130 0.00 0.00 37.69 3.86
4017 4340 3.791887 CGTCGAGAACACATCTATTGTCC 59.208 47.826 0.00 0.00 38.96 4.02
4163 4487 5.012561 GGTAGCTGATTTGGTGATAGAGGAT 59.987 44.000 0.00 0.00 0.00 3.24
4203 4527 4.493747 CGCTTCCTCCGTCGGGAC 62.494 72.222 12.29 0.00 37.43 4.46
4249 4573 1.228245 TGGCCCAACTGAGCTCAAC 60.228 57.895 18.85 3.16 0.00 3.18
4304 4628 1.153086 GACCATCCGAAGCATGCCT 60.153 57.895 15.66 0.00 0.00 4.75
4325 4649 1.473278 GAGGTGGGACTCTTCTACACG 59.527 57.143 0.00 0.00 34.65 4.49
4355 4679 1.361993 GAACATGCCGCCACAAACA 59.638 52.632 0.00 0.00 0.00 2.83
4361 4685 1.210155 GCCGCCACAAACATGAGTC 59.790 57.895 0.00 0.00 0.00 3.36
4362 4686 1.237285 GCCGCCACAAACATGAGTCT 61.237 55.000 0.00 0.00 0.00 3.24
4363 4687 1.238439 CCGCCACAAACATGAGTCTT 58.762 50.000 0.00 0.00 0.00 3.01
4365 4689 1.872952 CGCCACAAACATGAGTCTTCA 59.127 47.619 0.00 0.00 37.81 3.02
4376 4700 4.081476 ACATGAGTCTTCATCGATGTGGAA 60.081 41.667 24.09 11.09 42.12 3.53
4394 4718 2.162408 GGAAAGGAGCATGTTTCTTCCG 59.838 50.000 3.25 0.00 33.85 4.30
4412 4736 1.269831 CCGAATTTTTGGCCCGAAACA 60.270 47.619 0.00 0.00 0.00 2.83
4420 4744 1.376812 GGCCCGAAACATCCGAAGT 60.377 57.895 0.00 0.00 0.00 3.01
4424 4748 2.740580 GCCCGAAACATCCGAAGTATCA 60.741 50.000 0.00 0.00 0.00 2.15
4484 4808 2.170607 CTGGAAAGTGATACCGGTGGAT 59.829 50.000 19.93 2.61 0.00 3.41
4485 4809 3.376636 TGGAAAGTGATACCGGTGGATA 58.623 45.455 19.93 0.00 0.00 2.59
4486 4810 3.775866 TGGAAAGTGATACCGGTGGATAA 59.224 43.478 19.93 0.00 0.00 1.75
4487 4811 4.410883 TGGAAAGTGATACCGGTGGATAAT 59.589 41.667 19.93 0.70 0.00 1.28
4488 4812 4.755123 GGAAAGTGATACCGGTGGATAATG 59.245 45.833 19.93 0.00 0.00 1.90
4489 4813 4.351874 AAGTGATACCGGTGGATAATGG 57.648 45.455 19.93 0.00 0.00 3.16
4490 4814 3.314693 AGTGATACCGGTGGATAATGGT 58.685 45.455 19.93 0.00 38.51 3.55
4491 4815 3.071023 AGTGATACCGGTGGATAATGGTG 59.929 47.826 19.93 0.00 35.93 4.17
4492 4816 2.370519 TGATACCGGTGGATAATGGTGG 59.629 50.000 19.93 0.00 35.93 4.61
4493 4817 2.177811 TACCGGTGGATAATGGTGGA 57.822 50.000 19.93 0.00 35.93 4.02
4519 4843 8.714179 AGAATGTTCGTTCGTGAAAAATATACA 58.286 29.630 0.06 0.00 33.36 2.29
4575 4900 3.748048 TGCTGAAGATGTGCTCTTGTTAC 59.252 43.478 0.00 0.00 44.42 2.50
4696 5055 7.420800 GTGATGGAATTTGTACCTCATGAATC 58.579 38.462 0.00 0.00 0.00 2.52
4750 5109 6.569127 TGTGTGATGTGGGTATACCTATTT 57.431 37.500 21.25 7.20 41.11 1.40
4751 5110 6.353323 TGTGTGATGTGGGTATACCTATTTG 58.647 40.000 21.25 0.00 41.11 2.32
4820 5179 4.513442 GTGTATGCCATCTAAACTGACCA 58.487 43.478 0.00 0.00 0.00 4.02
4821 5180 4.332819 GTGTATGCCATCTAAACTGACCAC 59.667 45.833 0.00 0.00 0.00 4.16
4866 5259 5.752955 AGCAAACATAATGACCAACAAACAC 59.247 36.000 0.00 0.00 0.00 3.32
4867 5260 5.521735 GCAAACATAATGACCAACAAACACA 59.478 36.000 0.00 0.00 0.00 3.72
4869 5262 7.413438 GCAAACATAATGACCAACAAACACAAA 60.413 33.333 0.00 0.00 0.00 2.83
4870 5263 8.610896 CAAACATAATGACCAACAAACACAAAT 58.389 29.630 0.00 0.00 0.00 2.32
4871 5264 8.729805 AACATAATGACCAACAAACACAAATT 57.270 26.923 0.00 0.00 0.00 1.82
4872 5265 8.364129 ACATAATGACCAACAAACACAAATTC 57.636 30.769 0.00 0.00 0.00 2.17
4873 5266 7.984050 ACATAATGACCAACAAACACAAATTCA 59.016 29.630 0.00 0.00 0.00 2.57
4874 5267 8.824781 CATAATGACCAACAAACACAAATTCAA 58.175 29.630 0.00 0.00 0.00 2.69
4892 5287 7.967890 AATTCAAAGGATTTTTCACCATGAC 57.032 32.000 0.00 0.00 35.03 3.06
4945 5369 8.647256 AATGGAGTTACAGTACAGTTACTAGT 57.353 34.615 9.65 0.00 36.31 2.57
4952 5377 6.830873 ACAGTACAGTTACTAGTAACCAGG 57.169 41.667 32.51 25.67 44.79 4.45
4962 5387 5.578157 ACTAGTAACCAGGGTTCAAATGT 57.422 39.130 7.04 0.00 39.31 2.71
5007 5432 3.651803 ACTTCAGACTCTTCCTTGTCG 57.348 47.619 0.00 0.00 38.16 4.35
5023 5448 0.818938 GTCGGTCCCCTTTCTCTCTC 59.181 60.000 0.00 0.00 0.00 3.20
5056 5481 0.102663 GTCGACCTCGGAATCTTCCC 59.897 60.000 3.51 0.00 44.67 3.97
5062 5487 1.202698 CCTCGGAATCTTCCCCATCAC 60.203 57.143 3.41 0.00 44.67 3.06
5202 5627 8.666573 CAGATCTGGAATATACATGCTTGAATC 58.333 37.037 15.38 0.00 0.00 2.52
5212 5637 3.243168 ACATGCTTGAATCACACACACAC 60.243 43.478 6.60 0.00 0.00 3.82
5213 5638 2.363683 TGCTTGAATCACACACACACA 58.636 42.857 0.00 0.00 0.00 3.72
5214 5639 2.097304 TGCTTGAATCACACACACACAC 59.903 45.455 0.00 0.00 0.00 3.82
5215 5640 2.097304 GCTTGAATCACACACACACACA 59.903 45.455 0.00 0.00 0.00 3.72
5216 5641 3.683989 CTTGAATCACACACACACACAC 58.316 45.455 0.00 0.00 0.00 3.82
5217 5642 2.704572 TGAATCACACACACACACACA 58.295 42.857 0.00 0.00 0.00 3.72
5218 5643 2.418280 TGAATCACACACACACACACAC 59.582 45.455 0.00 0.00 0.00 3.82
5219 5644 2.106477 ATCACACACACACACACACA 57.894 45.000 0.00 0.00 0.00 3.72
5220 5645 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
5224 5649 1.231296 ACACACACACACACACGCAA 61.231 50.000 0.00 0.00 0.00 4.85
5242 5667 2.462255 AAGCACGAGGTTGCAATGCG 62.462 55.000 14.46 14.37 45.62 4.73
5254 5679 0.811616 GCAATGCGGGTAGACAGGAG 60.812 60.000 0.00 0.00 0.00 3.69
5255 5680 0.824109 CAATGCGGGTAGACAGGAGA 59.176 55.000 0.00 0.00 0.00 3.71
5256 5681 1.115467 AATGCGGGTAGACAGGAGAG 58.885 55.000 0.00 0.00 0.00 3.20
5282 5707 4.592485 ACCTACCTCGCTGAAATGATAG 57.408 45.455 0.00 0.00 0.00 2.08
5285 5710 4.279671 CCTACCTCGCTGAAATGATAGTCT 59.720 45.833 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.667418 GCTGCTGGCAGAGGAAGA 59.333 61.111 24.40 0.00 46.30 2.87
162 163 1.380302 GCAACCTCTCCACCACCAT 59.620 57.895 0.00 0.00 0.00 3.55
163 164 2.829384 GGCAACCTCTCCACCACCA 61.829 63.158 0.00 0.00 0.00 4.17
299 304 3.186613 GCGAAAAGTCAAGGAAATCGTCT 59.813 43.478 0.00 0.00 0.00 4.18
307 312 0.889186 GCCAGGCGAAAAGTCAAGGA 60.889 55.000 0.00 0.00 0.00 3.36
345 350 4.162690 CTCCGGCGGAAGGGGAAG 62.163 72.222 30.59 12.56 0.00 3.46
399 408 0.824182 TGTTTTTGGGCCCGACGATT 60.824 50.000 19.37 0.00 0.00 3.34
404 413 2.915137 GCCTGTTTTTGGGCCCGA 60.915 61.111 19.37 14.11 42.30 5.14
482 494 3.060000 CCCCGGGGCGACTTTTTC 61.060 66.667 31.01 0.00 0.00 2.29
559 573 5.122711 ACGGTAAAATGTCCACTTTATTCGG 59.877 40.000 9.72 0.00 0.00 4.30
609 623 6.146673 TGCTTTGCATCAACATCTAGATATCG 59.853 38.462 4.54 0.00 31.71 2.92
620 634 2.458951 GTTCGTTGCTTTGCATCAACA 58.541 42.857 19.87 9.61 41.80 3.33
632 646 5.784625 TCAAATACGTATTTTCGTTCGTTGC 59.215 36.000 26.87 0.00 43.80 4.17
637 651 9.443244 GCAAAATTCAAATACGTATTTTCGTTC 57.557 29.630 26.87 10.66 43.80 3.95
658 672 4.970472 ATAAACGAGTACGAACGCAAAA 57.030 36.364 9.29 0.00 42.66 2.44
687 701 9.019764 CGAATACAAATCAAACAGTTCAGTTTT 57.980 29.630 0.00 0.00 39.55 2.43
696 710 8.519492 AAATGGTTCGAATACAAATCAAACAG 57.481 30.769 0.00 0.00 0.00 3.16
843 872 3.083997 CGGTGGGGAAGAGGAGGG 61.084 72.222 0.00 0.00 0.00 4.30
1206 1258 1.408969 ACAAATCTGGCGGTGGTTTT 58.591 45.000 0.00 0.00 0.00 2.43
1260 1312 2.221055 CGCCGATTTAGAACATAGCCAC 59.779 50.000 0.00 0.00 0.00 5.01
1296 1348 7.812690 AGCACTAAGATGAATCAATTGCATA 57.187 32.000 0.00 0.00 0.00 3.14
1301 1353 7.870509 TTGCTAGCACTAAGATGAATCAATT 57.129 32.000 19.17 0.00 0.00 2.32
1302 1354 7.555554 AGTTTGCTAGCACTAAGATGAATCAAT 59.444 33.333 19.17 0.00 0.00 2.57
1304 1356 6.409704 AGTTTGCTAGCACTAAGATGAATCA 58.590 36.000 19.17 0.00 0.00 2.57
1305 1357 6.917217 AGTTTGCTAGCACTAAGATGAATC 57.083 37.500 19.17 0.00 0.00 2.52
1306 1358 7.331026 TGTAGTTTGCTAGCACTAAGATGAAT 58.669 34.615 19.17 0.18 0.00 2.57
1307 1359 6.697395 TGTAGTTTGCTAGCACTAAGATGAA 58.303 36.000 19.17 3.20 0.00 2.57
1310 1457 6.287589 ACTGTAGTTTGCTAGCACTAAGAT 57.712 37.500 19.17 4.60 0.00 2.40
1317 1464 1.671850 GCCGACTGTAGTTTGCTAGCA 60.672 52.381 14.93 14.93 0.00 3.49
1332 1479 6.480320 AGACATAATAAACTCAATGAGCCGAC 59.520 38.462 10.62 0.00 32.04 4.79
1334 1481 6.851222 AGACATAATAAACTCAATGAGCCG 57.149 37.500 10.62 0.00 32.04 5.52
1338 1485 7.822334 ACCACGAAGACATAATAAACTCAATGA 59.178 33.333 0.00 0.00 0.00 2.57
1396 1543 9.499585 GAATTTCAACATCTCACTGAATATGTG 57.500 33.333 7.22 0.00 33.04 3.21
1404 1551 8.037382 ACTACATGAATTTCAACATCTCACTG 57.963 34.615 0.00 0.00 0.00 3.66
1459 1606 2.141517 CAACCTGACAGAGAGTTGCAG 58.858 52.381 3.32 0.00 33.85 4.41
1463 1610 2.843701 CTTGCAACCTGACAGAGAGTT 58.156 47.619 3.32 0.00 0.00 3.01
1473 1620 1.070445 TCAAAATGGGCTTGCAACCTG 59.930 47.619 14.91 7.56 0.00 4.00
1480 1627 2.611224 GCACCTTCTCAAAATGGGCTTG 60.611 50.000 0.00 0.00 0.00 4.01
1515 1662 3.119709 AAACGGCAGCGTGGTTGTG 62.120 57.895 0.00 0.00 0.00 3.33
1551 1698 0.389166 GCTCCTCCATTATCCGCGAG 60.389 60.000 8.23 0.00 0.00 5.03
1656 1803 7.335627 ACCACGGAATCATACTCAGAATTTTA 58.664 34.615 0.00 0.00 0.00 1.52
1683 1833 2.141517 GCCATGAATGAGGACGAGATG 58.858 52.381 0.00 0.00 0.00 2.90
1689 1839 2.134789 AACAGGCCATGAATGAGGAC 57.865 50.000 5.01 0.00 0.00 3.85
1722 1872 3.881937 TGACATCACAGATGAGACAGG 57.118 47.619 13.46 0.00 38.57 4.00
1745 1895 1.683943 TGGAATCAGCAGCCTAATGC 58.316 50.000 0.00 0.00 46.88 3.56
1777 1927 5.087391 GGGGGTAGAGAAGAAGTAACAAG 57.913 47.826 0.00 0.00 0.00 3.16
1945 2095 8.906867 GGAATCACTCAAGAATAAAATGGATCA 58.093 33.333 0.00 0.00 0.00 2.92
1947 2097 7.288621 GGGGAATCACTCAAGAATAAAATGGAT 59.711 37.037 0.00 0.00 0.00 3.41
2041 2192 7.753132 ACCGTTGTAGCATAATACAATTGTTTG 59.247 33.333 17.78 10.64 44.92 2.93
2051 2202 5.808540 GTGAAGTCACCGTTGTAGCATAATA 59.191 40.000 0.00 0.00 40.85 0.98
2077 2232 0.105778 GGCAGCAGAGTATGGTCTCC 59.894 60.000 0.00 0.00 37.60 3.71
2086 2241 0.689055 TCAATGTCAGGCAGCAGAGT 59.311 50.000 0.00 0.00 0.00 3.24
2245 2400 9.822727 AGGGGAAGAAATATTTACTCTTTCAAA 57.177 29.630 0.00 0.00 32.55 2.69
2323 2481 4.507710 TCTACTCATTGGATGCTGAACAC 58.492 43.478 0.00 0.00 0.00 3.32
2469 2627 6.215121 TGTAAGGTTGCAACAATGATCAAAG 58.785 36.000 29.55 0.00 0.00 2.77
2476 2634 3.913763 CGTCATGTAAGGTTGCAACAATG 59.086 43.478 29.55 21.54 0.00 2.82
2666 2919 5.746721 TCCGATATCTGTAACATCGTTTGTG 59.253 40.000 0.34 0.00 39.86 3.33
2733 2986 4.093703 CGATTGGCGTTTTCAGGTACAATA 59.906 41.667 0.00 0.00 34.64 1.90
2734 2987 3.119990 CGATTGGCGTTTTCAGGTACAAT 60.120 43.478 0.00 0.00 34.64 2.71
2757 3010 2.362736 ACAGCCATCAACTGTGCATAG 58.637 47.619 9.17 9.17 46.38 2.23
2856 3109 0.965439 TGCATTACCTTGCCAACACC 59.035 50.000 0.00 0.00 42.06 4.16
2934 3187 2.736721 TCTAAGACAACAGACGCATTGC 59.263 45.455 0.00 0.00 0.00 3.56
3149 3402 9.586435 CATGTATGAGTATGTTACTGACAAAGA 57.414 33.333 0.00 0.00 42.62 2.52
3150 3403 9.586435 TCATGTATGAGTATGTTACTGACAAAG 57.414 33.333 0.00 0.00 39.59 2.77
3182 3435 7.039293 TGCAGTAGTAACCTCTTCATAAGAACA 60.039 37.037 0.00 0.00 37.02 3.18
3207 3460 8.450578 TCCCAAAATAGATACTGTTATTGCTG 57.549 34.615 0.00 0.00 0.00 4.41
3310 3621 4.189231 CAATACTACCAGTACCCAGCAAC 58.811 47.826 0.00 0.00 32.84 4.17
3389 3700 8.655970 GGTTCTCAAACAACATATTTAAATGGC 58.344 33.333 11.05 0.00 37.10 4.40
3594 3905 6.849305 CCTACAAAACGTGTCAATAACAGTTC 59.151 38.462 0.00 0.00 41.98 3.01
3602 3913 1.533731 CGGCCTACAAAACGTGTCAAT 59.466 47.619 0.00 0.00 41.98 2.57
3609 3920 1.510776 TGGTAACGGCCTACAAAACG 58.489 50.000 0.00 0.00 42.51 3.60
3622 3933 6.031471 ACATGTTTGTTTTCTCGTTGGTAAC 58.969 36.000 0.00 0.00 29.55 2.50
3707 4028 7.361889 AGCAATTCAGATTATCAGCGATAAG 57.638 36.000 13.64 4.49 37.83 1.73
3713 4034 6.138761 CCGTTTAGCAATTCAGATTATCAGC 58.861 40.000 0.00 0.00 0.00 4.26
3714 4035 7.128331 CACCGTTTAGCAATTCAGATTATCAG 58.872 38.462 0.00 0.00 0.00 2.90
3716 4037 5.909610 GCACCGTTTAGCAATTCAGATTATC 59.090 40.000 0.00 0.00 0.00 1.75
3718 4039 4.095782 GGCACCGTTTAGCAATTCAGATTA 59.904 41.667 0.00 0.00 0.00 1.75
3738 4059 0.823356 GTTTCTTGCTGGTCAGGGCA 60.823 55.000 0.00 0.00 36.62 5.36
3825 4146 4.575885 TCAATACAAACCCAGACACTAGC 58.424 43.478 0.00 0.00 0.00 3.42
3886 4208 1.555075 AGAGCTAACGGCCTCAAATCA 59.445 47.619 0.00 0.00 43.05 2.57
3895 4217 3.119990 TGTTTTGCAATAGAGCTAACGGC 60.120 43.478 0.00 0.00 42.19 5.68
3951 4273 5.247564 TCCTGTACAGTAAGCAAATACCACT 59.752 40.000 21.18 0.00 0.00 4.00
3988 4311 2.281140 TGTGTTCTCGACGACAAACA 57.719 45.000 14.07 14.07 0.00 2.83
4017 4340 1.241165 TGCAGATGCCAACAGAGTTG 58.759 50.000 1.72 3.00 41.18 3.16
4163 4487 1.723608 CTCCAACCTGTGCACGCAAA 61.724 55.000 13.13 0.00 0.00 3.68
4249 4573 2.048222 TTGGTTCCTCGAGCAGCG 60.048 61.111 6.99 0.00 42.69 5.18
4304 4628 2.526432 GTGTAGAAGAGTCCCACCTCA 58.474 52.381 0.00 0.00 33.75 3.86
4325 4649 0.645868 GCATGTTCGCGTAGAGGAAC 59.354 55.000 5.77 2.11 42.17 3.62
4355 4679 4.743057 TTCCACATCGATGAAGACTCAT 57.257 40.909 31.33 3.59 45.34 2.90
4361 4685 2.611292 GCTCCTTTCCACATCGATGAAG 59.389 50.000 31.33 21.76 0.00 3.02
4362 4686 2.027285 TGCTCCTTTCCACATCGATGAA 60.027 45.455 31.33 12.92 0.00 2.57
4363 4687 1.554617 TGCTCCTTTCCACATCGATGA 59.445 47.619 31.33 6.81 0.00 2.92
4365 4689 2.092753 ACATGCTCCTTTCCACATCGAT 60.093 45.455 0.00 0.00 0.00 3.59
4376 4700 2.859165 TCGGAAGAAACATGCTCCTT 57.141 45.000 0.00 0.00 37.03 3.36
4394 4718 3.000041 GGATGTTTCGGGCCAAAAATTC 59.000 45.455 4.39 5.87 0.00 2.17
4412 4736 6.538742 CACATAAACCACTTGATACTTCGGAT 59.461 38.462 0.00 0.00 0.00 4.18
4424 4748 7.822334 TCGAGATTTCATACACATAAACCACTT 59.178 33.333 0.00 0.00 0.00 3.16
4445 4769 2.359214 CCAGAATCCAGAACGATCGAGA 59.641 50.000 24.34 10.25 0.00 4.04
4484 4808 3.930229 CGAACGAACATTCTCCACCATTA 59.070 43.478 0.00 0.00 0.00 1.90
4485 4809 2.742053 CGAACGAACATTCTCCACCATT 59.258 45.455 0.00 0.00 0.00 3.16
4486 4810 2.289444 ACGAACGAACATTCTCCACCAT 60.289 45.455 0.14 0.00 0.00 3.55
4487 4811 1.069513 ACGAACGAACATTCTCCACCA 59.930 47.619 0.14 0.00 0.00 4.17
4488 4812 1.459592 CACGAACGAACATTCTCCACC 59.540 52.381 0.14 0.00 0.00 4.61
4489 4813 2.400399 TCACGAACGAACATTCTCCAC 58.600 47.619 0.14 0.00 0.00 4.02
4490 4814 2.804697 TCACGAACGAACATTCTCCA 57.195 45.000 0.14 0.00 0.00 3.86
4491 4815 4.461992 TTTTCACGAACGAACATTCTCC 57.538 40.909 0.14 0.00 0.00 3.71
4492 4816 9.195831 GTATATTTTTCACGAACGAACATTCTC 57.804 33.333 0.14 0.00 0.00 2.87
4493 4817 8.714179 TGTATATTTTTCACGAACGAACATTCT 58.286 29.630 0.14 0.00 0.00 2.40
4519 4843 0.042431 ACTCAGCCTCCTCTCCACAT 59.958 55.000 0.00 0.00 0.00 3.21
4575 4900 7.198306 ACAAGTATTTAACGAAGAACCAAGG 57.802 36.000 0.00 0.00 0.00 3.61
4610 4967 6.663953 ACAGCCTGTTGAACTCTAACTAGATA 59.336 38.462 0.00 0.00 0.00 1.98
4622 4979 2.125461 GCAGAAACAGCCTGTTGAAC 57.875 50.000 11.51 6.25 40.14 3.18
4750 5109 5.848833 ACCGTAAACAAATTGGTTAACCA 57.151 34.783 23.69 23.69 45.94 3.67
4751 5110 7.592051 TGATACCGTAAACAAATTGGTTAACC 58.408 34.615 18.27 18.27 30.39 2.85
4756 5115 7.887381 TGAATTGATACCGTAAACAAATTGGT 58.113 30.769 0.00 0.00 36.72 3.67
4769 5128 8.915871 ACTCAAAAATTGATGAATTGATACCG 57.084 30.769 0.00 0.00 39.30 4.02
4791 5150 5.648092 AGTTTAGATGGCATACACCAAACTC 59.352 40.000 0.00 0.00 44.65 3.01
4792 5151 5.415701 CAGTTTAGATGGCATACACCAAACT 59.584 40.000 0.00 8.91 44.65 2.66
4820 5179 7.660112 TGCTTTGTGATAACAAATTCATCAGT 58.340 30.769 8.88 0.00 38.69 3.41
4821 5180 8.523523 TTGCTTTGTGATAACAAATTCATCAG 57.476 30.769 8.88 0.00 38.69 2.90
4848 5207 8.362860 TGAATTTGTGTTTGTTGGTCATTATG 57.637 30.769 0.00 0.00 0.00 1.90
4854 5247 5.872070 TCCTTTGAATTTGTGTTTGTTGGTC 59.128 36.000 0.00 0.00 0.00 4.02
4866 5259 8.284693 GTCATGGTGAAAAATCCTTTGAATTTG 58.715 33.333 0.00 0.00 0.00 2.32
4867 5260 7.445096 GGTCATGGTGAAAAATCCTTTGAATTT 59.555 33.333 0.00 0.00 0.00 1.82
4869 5262 6.043012 TGGTCATGGTGAAAAATCCTTTGAAT 59.957 34.615 0.00 0.00 0.00 2.57
4870 5263 5.365025 TGGTCATGGTGAAAAATCCTTTGAA 59.635 36.000 0.00 0.00 0.00 2.69
4871 5264 4.898265 TGGTCATGGTGAAAAATCCTTTGA 59.102 37.500 0.00 0.00 0.00 2.69
4872 5265 5.212532 TGGTCATGGTGAAAAATCCTTTG 57.787 39.130 0.00 0.00 0.00 2.77
4873 5266 5.885449 TTGGTCATGGTGAAAAATCCTTT 57.115 34.783 0.00 0.00 0.00 3.11
4874 5267 5.885449 TTTGGTCATGGTGAAAAATCCTT 57.115 34.783 0.00 0.00 0.00 3.36
4908 5305 5.885881 TGTAACTCCATTTTGTTGTGTCAC 58.114 37.500 0.00 0.00 0.00 3.67
4923 5320 8.454894 GGTTACTAGTAACTGTACTGTAACTCC 58.545 40.741 33.70 16.13 43.55 3.85
4945 5369 4.537751 TCACAACATTTGAACCCTGGTTA 58.462 39.130 0.60 0.00 38.60 2.85
4952 5377 6.738114 TGAAAGAGATCACAACATTTGAACC 58.262 36.000 0.00 0.00 0.00 3.62
5023 5448 0.596083 GTCGACGATGCCATGGAGAG 60.596 60.000 18.40 5.63 0.00 3.20
5056 5481 0.543749 GAGGACAAGGGGAGTGATGG 59.456 60.000 0.00 0.00 0.00 3.51
5062 5487 0.036294 GAAACCGAGGACAAGGGGAG 60.036 60.000 0.00 0.00 0.00 4.30
5202 5627 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
5212 5637 2.351097 CGTGCTTGCGTGTGTGTG 60.351 61.111 0.00 0.00 0.00 3.82
5213 5638 2.510464 TCGTGCTTGCGTGTGTGT 60.510 55.556 0.00 0.00 0.00 3.72
5214 5639 2.246397 CTCGTGCTTGCGTGTGTG 59.754 61.111 0.00 0.00 0.00 3.82
5215 5640 2.967076 CCTCGTGCTTGCGTGTGT 60.967 61.111 0.00 0.00 0.00 3.72
5216 5641 2.534019 AACCTCGTGCTTGCGTGTG 61.534 57.895 0.00 0.00 0.00 3.82
5217 5642 2.203015 AACCTCGTGCTTGCGTGT 60.203 55.556 0.00 0.00 0.00 4.49
5218 5643 2.249309 CAACCTCGTGCTTGCGTG 59.751 61.111 0.00 0.00 0.00 5.34
5219 5644 3.649986 GCAACCTCGTGCTTGCGT 61.650 61.111 2.10 0.00 41.51 5.24
5220 5645 2.462255 ATTGCAACCTCGTGCTTGCG 62.462 55.000 0.00 0.00 44.84 4.85
5224 5649 2.956987 GCATTGCAACCTCGTGCT 59.043 55.556 13.41 0.00 45.17 4.40
5242 5667 2.380941 GTTCTCCTCTCCTGTCTACCC 58.619 57.143 0.00 0.00 0.00 3.69
5254 5679 0.741915 CAGCGAGGTAGGTTCTCCTC 59.258 60.000 0.00 0.00 43.94 3.71
5256 5681 1.183549 TTCAGCGAGGTAGGTTCTCC 58.816 55.000 0.00 0.00 0.00 3.71
5282 5707 3.057736 TCAAACTGTCTACGTGCCTAGAC 60.058 47.826 8.90 8.90 42.13 2.59
5285 5710 2.352421 GCTCAAACTGTCTACGTGCCTA 60.352 50.000 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.