Multiple sequence alignment - TraesCS5B01G008100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G008100 chr5B 100.000 2903 0 0 1 2903 8947074 8944172 0.000000e+00 5361
1 TraesCS5B01G008100 chr5A 89.491 1513 70 38 865 2347 6799279 6797826 0.000000e+00 1831
2 TraesCS5B01G008100 chr5D 90.596 1393 56 26 865 2239 8642534 8641199 0.000000e+00 1777
3 TraesCS5B01G008100 chr5D 91.389 871 50 14 1 869 8643778 8642931 0.000000e+00 1170
4 TraesCS5B01G008100 chr5D 81.743 241 20 12 2435 2659 8640971 8640739 2.300000e-41 180
5 TraesCS5B01G008100 chr1D 95.768 449 15 2 907 1354 453605987 453606432 0.000000e+00 721
6 TraesCS5B01G008100 chr4D 95.312 448 18 1 907 1354 475746404 475745960 0.000000e+00 708
7 TraesCS5B01G008100 chr2B 81.392 704 32 37 1695 2376 751313801 751314427 1.560000e-132 483
8 TraesCS5B01G008100 chr2B 84.536 388 45 7 1446 1820 676736489 676736874 1.270000e-98 370
9 TraesCS5B01G008100 chr7D 93.617 282 15 1 1073 1354 634158824 634158546 4.470000e-113 418
10 TraesCS5B01G008100 chr1B 85.271 387 44 4 1446 1820 30677549 30677934 1.260000e-103 387
11 TraesCS5B01G008100 chr1A 84.143 391 45 8 1446 1820 343757022 343756633 2.130000e-96 363


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G008100 chr5B 8944172 8947074 2902 True 5361.000000 5361 100.000000 1 2903 1 chr5B.!!$R1 2902
1 TraesCS5B01G008100 chr5A 6797826 6799279 1453 True 1831.000000 1831 89.491000 865 2347 1 chr5A.!!$R1 1482
2 TraesCS5B01G008100 chr5D 8640739 8643778 3039 True 1042.333333 1777 87.909333 1 2659 3 chr5D.!!$R1 2658
3 TraesCS5B01G008100 chr2B 751313801 751314427 626 False 483.000000 483 81.392000 1695 2376 1 chr2B.!!$F2 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 717 0.104409 AAACTGAGACCACCCCTCCT 60.104 55.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2640 3212 0.034476 TCAGCGATGGCCATCTCATC 59.966 55.0 36.51 23.93 41.24 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 0.233848 GTGCCGTTAGTTTGGTCGTG 59.766 55.000 0.00 0.00 0.00 4.35
47 49 6.210385 TGGGCAGTTCTTTTAATTGCAGATAA 59.790 34.615 7.40 0.00 36.53 1.75
57 59 0.393808 TTGCAGATAAGTTCCGGCCC 60.394 55.000 0.00 0.00 0.00 5.80
58 60 1.887707 GCAGATAAGTTCCGGCCCG 60.888 63.158 0.00 0.00 0.00 6.13
60 62 0.529992 CAGATAAGTTCCGGCCCGAC 60.530 60.000 3.71 0.00 0.00 4.79
64 66 1.546589 TAAGTTCCGGCCCGACACAT 61.547 55.000 3.71 0.00 0.00 3.21
68 70 1.001633 GTTCCGGCCCGACACATATAT 59.998 52.381 3.71 0.00 0.00 0.86
89 91 4.282950 TGCTGAATCAAGCGAAATGATC 57.717 40.909 0.00 0.00 46.65 2.92
99 101 6.340522 TCAAGCGAAATGATCAATCTAGTCA 58.659 36.000 0.00 0.00 0.00 3.41
107 109 9.346725 GAAATGATCAATCTAGTCAAACAAACC 57.653 33.333 0.00 0.00 0.00 3.27
167 169 1.627550 GGAACCAAGCGAGCGAGAAC 61.628 60.000 0.00 0.00 0.00 3.01
173 175 4.117661 GCGAGCGAGAACGGGTCT 62.118 66.667 0.00 0.00 40.25 3.85
174 176 2.758089 GCGAGCGAGAACGGGTCTA 61.758 63.158 0.00 0.00 36.41 2.59
175 177 2.023318 CGAGCGAGAACGGGTCTAT 58.977 57.895 0.00 0.00 36.41 1.98
176 178 1.224075 CGAGCGAGAACGGGTCTATA 58.776 55.000 0.00 0.00 36.41 1.31
181 183 3.128938 AGCGAGAACGGGTCTATATATGC 59.871 47.826 0.00 0.00 36.41 3.14
186 188 4.220821 AGAACGGGTCTATATATGCTGTGG 59.779 45.833 0.00 0.00 33.56 4.17
195 197 8.725148 GGTCTATATATGCTGTGGATTTCTTTG 58.275 37.037 0.00 0.00 0.00 2.77
203 205 4.202253 GCTGTGGATTTCTTTGGTTTTCCT 60.202 41.667 0.00 0.00 41.38 3.36
236 238 6.076298 CGACGACAGTAATGTTGTTGTTTTTC 60.076 38.462 16.85 2.51 41.92 2.29
290 293 4.505313 TCATGCATATAGAGTGTCCGAC 57.495 45.455 0.00 0.00 0.00 4.79
294 297 3.003378 TGCATATAGAGTGTCCGACTTCG 59.997 47.826 0.00 0.00 33.83 3.79
316 319 0.943673 TGGACACTTGTCATGTTGCG 59.056 50.000 11.40 0.00 46.47 4.85
340 343 6.183360 CGGCGATATATACGTGCATAAACTTT 60.183 38.462 0.00 0.00 0.00 2.66
408 411 2.418083 CGGATCCCCCAAAGCAAGC 61.418 63.158 6.06 0.00 34.14 4.01
460 463 2.476320 GCCGCTCCTTGGAGAATGC 61.476 63.158 19.85 13.57 0.00 3.56
461 464 1.078214 CCGCTCCTTGGAGAATGCA 60.078 57.895 19.85 0.00 30.91 3.96
462 465 0.465097 CCGCTCCTTGGAGAATGCAT 60.465 55.000 19.85 0.00 35.22 3.96
463 466 0.661552 CGCTCCTTGGAGAATGCATG 59.338 55.000 19.85 0.00 35.22 4.06
466 469 2.121645 CCTTGGAGAATGCATGGCC 58.878 57.895 0.00 0.00 44.21 5.36
467 470 0.685131 CCTTGGAGAATGCATGGCCA 60.685 55.000 8.56 8.56 44.21 5.36
468 471 0.458669 CTTGGAGAATGCATGGCCAC 59.541 55.000 8.16 0.00 35.22 5.01
469 472 0.971959 TTGGAGAATGCATGGCCACC 60.972 55.000 8.16 1.81 35.22 4.61
470 473 2.129785 GGAGAATGCATGGCCACCC 61.130 63.158 8.16 1.63 0.00 4.61
471 474 1.076485 GAGAATGCATGGCCACCCT 60.076 57.895 8.16 0.00 0.00 4.34
472 475 0.183492 GAGAATGCATGGCCACCCTA 59.817 55.000 8.16 0.00 0.00 3.53
473 476 0.184451 AGAATGCATGGCCACCCTAG 59.816 55.000 8.16 0.00 0.00 3.02
497 500 4.935352 AACTTTAGGCAAGCACATTTCA 57.065 36.364 0.00 0.00 35.65 2.69
516 519 3.893521 TCAAGACCTTTTCCCTTTCGTT 58.106 40.909 0.00 0.00 0.00 3.85
523 526 7.173032 AGACCTTTTCCCTTTCGTTTATATGT 58.827 34.615 0.00 0.00 0.00 2.29
543 546 6.590234 ATGTTGATAAAGACCTTTTGTCCC 57.410 37.500 0.00 0.00 45.68 4.46
585 588 6.350103 TGTTATCATGCGTACCCATTTTCTA 58.650 36.000 0.00 0.00 0.00 2.10
588 591 4.439057 TCATGCGTACCCATTTTCTAGAC 58.561 43.478 0.00 0.00 0.00 2.59
598 601 4.220602 CCCATTTTCTAGACCACCCAAAAG 59.779 45.833 0.00 0.00 0.00 2.27
614 617 7.396055 CCACCCAAAAGGATACATCTTCTAAAA 59.604 37.037 0.00 0.00 39.89 1.52
670 673 8.887036 AAAGTTTTTCATGACCCTAAAATGAC 57.113 30.769 0.00 0.00 30.26 3.06
674 677 9.353999 GTTTTTCATGACCCTAAAATGACATAC 57.646 33.333 0.00 0.00 30.26 2.39
680 683 8.567948 CATGACCCTAAAATGACATACCAATAC 58.432 37.037 0.00 0.00 0.00 1.89
684 687 7.340999 ACCCTAAAATGACATACCAATACAACC 59.659 37.037 0.00 0.00 0.00 3.77
714 717 0.104409 AAACTGAGACCACCCCTCCT 60.104 55.000 0.00 0.00 0.00 3.69
778 781 1.464997 GCTTCGAACTGTAAAGCCTGG 59.535 52.381 0.00 0.00 39.55 4.45
780 783 2.163818 TCGAACTGTAAAGCCTGGTG 57.836 50.000 0.00 0.00 0.00 4.17
781 784 1.156736 CGAACTGTAAAGCCTGGTGG 58.843 55.000 0.00 0.00 0.00 4.61
795 798 2.262915 GTGGCTCGGACTGTCCAG 59.737 66.667 25.42 20.56 35.91 3.86
817 820 0.320374 TCCAAGCCCGCTATAATCGG 59.680 55.000 6.20 6.20 46.05 4.18
1056 1460 2.509336 GAGCACCCGGACATCGTG 60.509 66.667 0.73 2.60 37.11 4.35
1119 1523 1.519719 CTTCCTCCTCGGCTTCCTG 59.480 63.158 0.00 0.00 0.00 3.86
1921 2337 3.356639 GAGCGGCGTGAGGTGATCA 62.357 63.158 9.37 0.00 34.79 2.92
1922 2338 2.887568 GCGGCGTGAGGTGATCAG 60.888 66.667 9.37 0.00 39.07 2.90
1923 2339 2.202797 CGGCGTGAGGTGATCAGG 60.203 66.667 0.00 0.00 44.85 3.86
1924 2340 2.187946 GGCGTGAGGTGATCAGGG 59.812 66.667 0.00 0.00 42.78 4.45
1925 2341 2.512515 GCGTGAGGTGATCAGGGC 60.513 66.667 0.00 0.00 42.78 5.19
1926 2342 2.187946 CGTGAGGTGATCAGGGCC 59.812 66.667 0.00 0.00 39.07 5.80
1927 2343 2.592308 GTGAGGTGATCAGGGCCC 59.408 66.667 16.46 16.46 39.07 5.80
1928 2344 2.692368 TGAGGTGATCAGGGCCCC 60.692 66.667 21.43 2.76 32.77 5.80
1929 2345 2.692368 GAGGTGATCAGGGCCCCA 60.692 66.667 21.43 6.19 0.00 4.96
1930 2346 2.204291 AGGTGATCAGGGCCCCAA 60.204 61.111 21.43 7.29 0.00 4.12
1954 2370 7.875327 ACCAACCAACCATTGTAATATACTC 57.125 36.000 0.00 0.00 0.00 2.59
1979 2398 5.499004 ACTGTAGTACAATCCATTGGTGT 57.501 39.130 4.21 3.42 41.96 4.16
2018 2438 3.598715 CGGCATTGGCATCGGCAT 61.599 61.111 11.10 0.00 43.71 4.40
2019 2439 2.337532 GGCATTGGCATCGGCATC 59.662 61.111 5.17 0.00 43.71 3.91
2020 2440 2.050714 GCATTGGCATCGGCATCG 60.051 61.111 0.00 0.00 43.71 3.84
2021 2441 2.640989 CATTGGCATCGGCATCGG 59.359 61.111 0.00 0.00 43.71 4.18
2022 2442 3.289834 ATTGGCATCGGCATCGGC 61.290 61.111 0.00 0.00 43.71 5.54
2023 2443 4.792804 TTGGCATCGGCATCGGCA 62.793 61.111 0.00 0.00 43.71 5.69
2024 2444 4.567488 TGGCATCGGCATCGGCAT 62.567 61.111 0.00 0.00 43.71 4.40
2025 2445 3.289834 GGCATCGGCATCGGCATT 61.290 61.111 0.00 0.00 43.71 3.56
2026 2446 2.253452 GCATCGGCATCGGCATTC 59.747 61.111 0.00 0.00 43.71 2.67
2027 2447 2.552768 CATCGGCATCGGCATTCG 59.447 61.111 0.00 0.00 43.71 3.34
2028 2448 2.666190 ATCGGCATCGGCATTCGG 60.666 61.111 0.00 0.00 43.71 4.30
2065 2513 3.515602 TCCCGATGAGATGAGATGAGA 57.484 47.619 0.00 0.00 0.00 3.27
2066 2514 4.044946 TCCCGATGAGATGAGATGAGAT 57.955 45.455 0.00 0.00 0.00 2.75
2068 2516 3.762823 CCCGATGAGATGAGATGAGATGA 59.237 47.826 0.00 0.00 0.00 2.92
2069 2517 4.142337 CCCGATGAGATGAGATGAGATGAG 60.142 50.000 0.00 0.00 0.00 2.90
2070 2518 4.701171 CCGATGAGATGAGATGAGATGAGA 59.299 45.833 0.00 0.00 0.00 3.27
2071 2519 5.358725 CCGATGAGATGAGATGAGATGAGAT 59.641 44.000 0.00 0.00 0.00 2.75
2072 2520 6.262601 CGATGAGATGAGATGAGATGAGATG 58.737 44.000 0.00 0.00 0.00 2.90
2073 2521 6.094325 CGATGAGATGAGATGAGATGAGATGA 59.906 42.308 0.00 0.00 0.00 2.92
2102 2553 1.000283 GGTGACTCGCTGCTGCTATAT 60.000 52.381 14.03 0.00 36.97 0.86
2180 2634 9.647918 ATGGGTACACATACATAGATAGATAGG 57.352 37.037 9.41 0.00 32.40 2.57
2181 2635 8.842764 TGGGTACACATACATAGATAGATAGGA 58.157 37.037 0.00 0.00 32.40 2.94
2182 2636 9.344772 GGGTACACATACATAGATAGATAGGAG 57.655 40.741 0.00 0.00 32.40 3.69
2183 2637 8.842280 GGTACACATACATAGATAGATAGGAGC 58.158 40.741 0.00 0.00 32.40 4.70
2198 2654 7.666063 AGATAGGAGCACATACATATATGCA 57.334 36.000 12.79 0.00 41.83 3.96
2244 2703 3.877357 CTGCCGCTGCTGCTGATG 61.877 66.667 16.81 1.78 38.71 3.07
2248 2707 2.818274 CGCTGCTGCTGATGCTGA 60.818 61.111 14.03 0.00 40.01 4.26
2249 2708 2.180862 CGCTGCTGCTGATGCTGAT 61.181 57.895 14.03 0.00 40.01 2.90
2250 2709 1.356979 GCTGCTGCTGATGCTGATG 59.643 57.895 10.92 0.00 40.01 3.07
2251 2710 1.095807 GCTGCTGCTGATGCTGATGA 61.096 55.000 10.92 0.00 40.01 2.92
2252 2711 1.598882 CTGCTGCTGATGCTGATGAT 58.401 50.000 0.00 0.00 40.01 2.45
2261 2720 4.689812 GCTGATGCTGATGATTAACTCGAT 59.310 41.667 0.00 0.00 36.03 3.59
2268 2727 8.302965 TGCTGATGATTAACTCGATTCTTATG 57.697 34.615 0.00 0.00 0.00 1.90
2302 2761 3.070878 TGTTCTTGGCAAGGGGAATTTTC 59.929 43.478 25.92 3.75 0.00 2.29
2316 2789 5.650266 GGGGAATTTTCTCCTCTTCTTCTTC 59.350 44.000 1.76 0.00 44.73 2.87
2317 2790 6.480763 GGGAATTTTCTCCTCTTCTTCTTCT 58.519 40.000 0.00 0.00 35.63 2.85
2319 2792 7.450014 GGGAATTTTCTCCTCTTCTTCTTCTTT 59.550 37.037 0.00 0.00 35.63 2.52
2356 2835 1.349026 AGTGGGTGACATCTGAACTGG 59.651 52.381 0.00 0.00 0.00 4.00
2361 2840 3.244561 GGGTGACATCTGAACTGGAAAGA 60.245 47.826 0.00 0.00 0.00 2.52
2384 2941 6.777580 AGAAAACATCTAAGCTTCCTTTTGGA 59.222 34.615 0.00 0.00 41.39 3.53
2385 2942 7.452813 AGAAAACATCTAAGCTTCCTTTTGGAT 59.547 33.333 0.00 0.00 42.19 3.41
2395 2952 1.888512 TCCTTTTGGATGCAACTGAGC 59.111 47.619 0.00 0.00 45.19 4.26
2396 2953 1.067354 CCTTTTGGATGCAACTGAGCC 60.067 52.381 0.00 0.00 44.07 4.70
2397 2954 1.891150 CTTTTGGATGCAACTGAGCCT 59.109 47.619 0.00 0.00 0.00 4.58
2398 2955 1.250328 TTTGGATGCAACTGAGCCTG 58.750 50.000 0.00 0.00 0.00 4.85
2399 2956 0.111061 TTGGATGCAACTGAGCCTGT 59.889 50.000 0.00 0.00 0.00 4.00
2400 2957 0.607217 TGGATGCAACTGAGCCTGTG 60.607 55.000 0.00 0.00 0.00 3.66
2401 2958 0.607489 GGATGCAACTGAGCCTGTGT 60.607 55.000 0.00 0.00 0.00 3.72
2402 2959 0.520404 GATGCAACTGAGCCTGTGTG 59.480 55.000 0.00 0.00 0.00 3.82
2403 2960 0.179009 ATGCAACTGAGCCTGTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
2404 2961 1.096967 TGCAACTGAGCCTGTGTGTG 61.097 55.000 0.00 0.00 0.00 3.82
2405 2962 1.097547 GCAACTGAGCCTGTGTGTGT 61.098 55.000 0.00 0.00 0.00 3.72
2406 2963 0.940126 CAACTGAGCCTGTGTGTGTC 59.060 55.000 0.00 0.00 0.00 3.67
2407 2964 0.833287 AACTGAGCCTGTGTGTGTCT 59.167 50.000 0.00 0.00 0.00 3.41
2408 2965 0.390860 ACTGAGCCTGTGTGTGTCTC 59.609 55.000 0.00 0.00 0.00 3.36
2409 2966 0.678395 CTGAGCCTGTGTGTGTCTCT 59.322 55.000 0.00 0.00 0.00 3.10
2410 2967 0.390492 TGAGCCTGTGTGTGTCTCTG 59.610 55.000 0.00 0.00 0.00 3.35
2411 2968 0.390860 GAGCCTGTGTGTGTCTCTGT 59.609 55.000 0.00 0.00 0.00 3.41
2412 2969 0.390860 AGCCTGTGTGTGTCTCTGTC 59.609 55.000 0.00 0.00 0.00 3.51
2413 2970 0.390860 GCCTGTGTGTGTCTCTGTCT 59.609 55.000 0.00 0.00 0.00 3.41
2414 2971 1.871408 GCCTGTGTGTGTCTCTGTCTG 60.871 57.143 0.00 0.00 0.00 3.51
2415 2972 1.410517 CCTGTGTGTGTCTCTGTCTGT 59.589 52.381 0.00 0.00 0.00 3.41
2416 2973 2.467838 CTGTGTGTGTCTCTGTCTGTG 58.532 52.381 0.00 0.00 0.00 3.66
2417 2974 2.099405 TGTGTGTGTCTCTGTCTGTGA 58.901 47.619 0.00 0.00 0.00 3.58
2418 2975 2.695147 TGTGTGTGTCTCTGTCTGTGAT 59.305 45.455 0.00 0.00 0.00 3.06
2419 2976 3.243535 TGTGTGTGTCTCTGTCTGTGATC 60.244 47.826 0.00 0.00 0.00 2.92
2420 2977 2.297315 TGTGTGTCTCTGTCTGTGATCC 59.703 50.000 0.00 0.00 0.00 3.36
2421 2978 1.895798 TGTGTCTCTGTCTGTGATCCC 59.104 52.381 0.00 0.00 0.00 3.85
2422 2979 1.895798 GTGTCTCTGTCTGTGATCCCA 59.104 52.381 0.00 0.00 0.00 4.37
2423 2980 2.499289 GTGTCTCTGTCTGTGATCCCAT 59.501 50.000 0.00 0.00 0.00 4.00
2424 2981 2.498885 TGTCTCTGTCTGTGATCCCATG 59.501 50.000 0.00 0.00 0.00 3.66
2425 2982 1.483827 TCTCTGTCTGTGATCCCATGC 59.516 52.381 0.00 0.00 0.00 4.06
2426 2983 0.543277 TCTGTCTGTGATCCCATGCC 59.457 55.000 0.00 0.00 0.00 4.40
2427 2984 0.253894 CTGTCTGTGATCCCATGCCA 59.746 55.000 0.00 0.00 0.00 4.92
2428 2985 0.697658 TGTCTGTGATCCCATGCCAA 59.302 50.000 0.00 0.00 0.00 4.52
2429 2986 1.098050 GTCTGTGATCCCATGCCAAC 58.902 55.000 0.00 0.00 0.00 3.77
2430 2987 0.994247 TCTGTGATCCCATGCCAACT 59.006 50.000 0.00 0.00 0.00 3.16
2431 2988 1.100510 CTGTGATCCCATGCCAACTG 58.899 55.000 0.00 0.00 0.00 3.16
2432 2989 0.966875 TGTGATCCCATGCCAACTGC 60.967 55.000 0.00 0.00 41.77 4.40
2433 2990 1.380246 TGATCCCATGCCAACTGCC 60.380 57.895 0.00 0.00 40.16 4.85
2474 3031 2.749044 CTCAAGTGCCATGCCGCT 60.749 61.111 0.00 0.00 0.00 5.52
2475 3032 2.747460 TCAAGTGCCATGCCGCTC 60.747 61.111 0.00 0.00 0.00 5.03
2480 3037 3.709633 TGCCATGCCGCTCTGTCT 61.710 61.111 0.00 0.00 0.00 3.41
2485 3042 0.445436 CATGCCGCTCTGTCTTGTTC 59.555 55.000 0.00 0.00 0.00 3.18
2487 3044 1.664965 GCCGCTCTGTCTTGTTCGT 60.665 57.895 0.00 0.00 0.00 3.85
2489 3046 0.597637 CCGCTCTGTCTTGTTCGTGT 60.598 55.000 0.00 0.00 0.00 4.49
2490 3047 1.209128 CGCTCTGTCTTGTTCGTGTT 58.791 50.000 0.00 0.00 0.00 3.32
2491 3048 1.190323 CGCTCTGTCTTGTTCGTGTTC 59.810 52.381 0.00 0.00 0.00 3.18
2493 3050 2.727777 CTCTGTCTTGTTCGTGTTCGA 58.272 47.619 0.00 0.00 44.66 3.71
2495 3052 1.190323 CTGTCTTGTTCGTGTTCGAGC 59.810 52.381 0.00 0.00 46.81 5.03
2499 3056 2.465920 GTTCGTGTTCGAGCGCAG 59.534 61.111 11.47 2.69 46.81 5.18
2500 3057 2.014554 GTTCGTGTTCGAGCGCAGA 61.015 57.895 11.47 5.70 46.81 4.26
2501 3058 1.729484 TTCGTGTTCGAGCGCAGAG 60.729 57.895 11.47 0.00 46.81 3.35
2502 3059 2.125202 TTCGTGTTCGAGCGCAGAGA 62.125 55.000 11.47 2.15 46.81 3.10
2503 3060 1.729484 CGTGTTCGAGCGCAGAGAA 60.729 57.895 11.47 9.26 39.71 2.87
2505 3062 0.387367 GTGTTCGAGCGCAGAGAAGA 60.387 55.000 11.47 7.74 0.00 2.87
2529 3094 1.560860 GACAGACACGGAGCACAAGC 61.561 60.000 0.00 0.00 42.56 4.01
2530 3095 2.031163 AGACACGGAGCACAAGCC 59.969 61.111 0.00 0.00 43.56 4.35
2533 3098 2.117941 GACACGGAGCACAAGCCAAC 62.118 60.000 0.00 0.00 43.56 3.77
2537 3102 1.662044 GGAGCACAAGCCAACAAGG 59.338 57.895 0.00 0.00 43.56 3.61
2540 3105 1.109323 AGCACAAGCCAACAAGGGAC 61.109 55.000 0.00 0.00 43.56 4.46
2562 3127 2.152016 GCTCCGTTTTCTGGTTAAGCT 58.848 47.619 6.19 0.00 0.00 3.74
2563 3128 2.095718 GCTCCGTTTTCTGGTTAAGCTG 60.096 50.000 6.19 5.70 0.00 4.24
2564 3129 3.139077 CTCCGTTTTCTGGTTAAGCTGT 58.861 45.455 6.19 0.00 0.00 4.40
2565 3130 4.312443 CTCCGTTTTCTGGTTAAGCTGTA 58.688 43.478 6.19 0.00 0.00 2.74
2608 3180 2.662857 TGCAGCTGTCACGTGAGC 60.663 61.111 20.73 19.77 35.28 4.26
2618 3190 2.032681 ACGTGAGCAAGGAAGGCC 59.967 61.111 0.00 0.00 0.00 5.19
2622 3194 1.228245 TGAGCAAGGAAGGCCACAC 60.228 57.895 5.01 0.00 36.29 3.82
2629 3201 3.660111 GAAGGCCACACACACGCC 61.660 66.667 5.01 0.00 43.35 5.68
2639 3211 1.143183 ACACACGCCGACAAAGAGT 59.857 52.632 0.00 0.00 0.00 3.24
2640 3212 1.151777 ACACACGCCGACAAAGAGTG 61.152 55.000 0.00 0.00 38.63 3.51
2641 3213 0.874175 CACACGCCGACAAAGAGTGA 60.874 55.000 0.00 0.00 36.71 3.41
2654 3226 3.488778 AAGAGTGATGAGATGGCCATC 57.511 47.619 34.48 34.48 40.48 3.51
2659 3231 0.034476 GATGAGATGGCCATCGCTGA 59.966 55.000 38.38 25.87 42.48 4.26
2660 3232 0.691332 ATGAGATGGCCATCGCTGAT 59.309 50.000 38.38 26.73 42.48 2.90
2661 3233 0.250166 TGAGATGGCCATCGCTGATG 60.250 55.000 38.38 10.40 42.48 3.07
2662 3234 1.575576 GAGATGGCCATCGCTGATGC 61.576 60.000 34.41 18.07 42.48 3.91
2663 3235 1.600076 GATGGCCATCGCTGATGCT 60.600 57.895 29.34 0.00 38.59 3.79
2664 3236 1.853114 GATGGCCATCGCTGATGCTG 61.853 60.000 29.34 3.00 38.59 4.41
2665 3237 3.962421 GGCCATCGCTGATGCTGC 61.962 66.667 0.00 10.42 38.59 5.25
2666 3238 2.900838 GCCATCGCTGATGCTGCT 60.901 61.111 11.51 0.00 38.59 4.24
2667 3239 3.023118 CCATCGCTGATGCTGCTG 58.977 61.111 11.51 0.00 38.59 4.41
2668 3240 2.328289 CATCGCTGATGCTGCTGC 59.672 61.111 8.89 8.89 33.17 5.25
2669 3241 2.180862 CATCGCTGATGCTGCTGCT 61.181 57.895 17.00 2.26 40.48 4.24
2670 3242 2.180862 ATCGCTGATGCTGCTGCTG 61.181 57.895 17.00 0.77 40.48 4.41
2671 3243 4.538283 CGCTGATGCTGCTGCTGC 62.538 66.667 22.51 22.51 40.48 5.25
2672 3244 3.134792 GCTGATGCTGCTGCTGCT 61.135 61.111 27.67 15.76 40.48 4.24
2673 3245 2.794621 CTGATGCTGCTGCTGCTG 59.205 61.111 27.67 16.73 40.48 4.41
2674 3246 2.033602 TGATGCTGCTGCTGCTGT 59.966 55.556 27.67 18.20 39.81 4.40
2675 3247 1.587043 CTGATGCTGCTGCTGCTGTT 61.587 55.000 27.67 15.16 39.81 3.16
2676 3248 1.154016 GATGCTGCTGCTGCTGTTG 60.154 57.895 27.67 8.62 39.81 3.33
2677 3249 3.282745 ATGCTGCTGCTGCTGTTGC 62.283 57.895 27.67 16.48 39.81 4.17
2679 3251 3.657059 CTGCTGCTGCTGTTGCGT 61.657 61.111 17.00 0.00 43.34 5.24
2680 3252 3.590443 CTGCTGCTGCTGTTGCGTC 62.590 63.158 17.00 0.00 43.34 5.19
2681 3253 4.731503 GCTGCTGCTGTTGCGTCG 62.732 66.667 8.53 0.00 43.34 5.12
2682 3254 3.037833 CTGCTGCTGTTGCGTCGA 61.038 61.111 0.00 0.00 43.34 4.20
2683 3255 2.357396 TGCTGCTGTTGCGTCGAT 60.357 55.556 0.00 0.00 43.34 3.59
2684 3256 2.288926 CTGCTGCTGTTGCGTCGATC 62.289 60.000 0.00 0.00 43.34 3.69
2685 3257 3.084579 CTGCTGTTGCGTCGATCC 58.915 61.111 0.00 0.00 43.34 3.36
2686 3258 1.737735 CTGCTGTTGCGTCGATCCA 60.738 57.895 0.00 0.00 43.34 3.41
2687 3259 1.959899 CTGCTGTTGCGTCGATCCAC 61.960 60.000 0.00 0.00 43.34 4.02
2688 3260 1.738099 GCTGTTGCGTCGATCCACT 60.738 57.895 0.00 0.00 0.00 4.00
2689 3261 1.959899 GCTGTTGCGTCGATCCACTG 61.960 60.000 0.00 0.00 0.00 3.66
2690 3262 0.667487 CTGTTGCGTCGATCCACTGT 60.667 55.000 0.00 0.00 0.00 3.55
2691 3263 0.666274 TGTTGCGTCGATCCACTGTC 60.666 55.000 0.00 0.00 0.00 3.51
2692 3264 0.388649 GTTGCGTCGATCCACTGTCT 60.389 55.000 0.00 0.00 0.00 3.41
2693 3265 0.388520 TTGCGTCGATCCACTGTCTG 60.389 55.000 0.00 0.00 0.00 3.51
2694 3266 1.213013 GCGTCGATCCACTGTCTGT 59.787 57.895 0.00 0.00 0.00 3.41
2695 3267 1.073216 GCGTCGATCCACTGTCTGTG 61.073 60.000 0.00 2.97 45.80 3.66
2696 3268 1.073216 CGTCGATCCACTGTCTGTGC 61.073 60.000 4.40 0.00 44.92 4.57
2697 3269 0.038251 GTCGATCCACTGTCTGTGCA 60.038 55.000 4.40 0.00 44.92 4.57
2698 3270 0.244721 TCGATCCACTGTCTGTGCAG 59.755 55.000 4.40 0.00 44.92 4.41
2699 3271 0.244721 CGATCCACTGTCTGTGCAGA 59.755 55.000 4.40 0.00 44.92 4.26
2700 3272 1.735038 CGATCCACTGTCTGTGCAGAG 60.735 57.143 4.05 4.05 44.92 3.35
2701 3273 0.612229 ATCCACTGTCTGTGCAGAGG 59.388 55.000 11.47 0.00 44.88 3.69
2702 3274 1.004080 CCACTGTCTGTGCAGAGGG 60.004 63.158 11.47 0.00 44.92 4.30
2703 3275 1.004080 CACTGTCTGTGCAGAGGGG 60.004 63.158 11.47 4.28 40.06 4.79
2704 3276 1.152247 ACTGTCTGTGCAGAGGGGA 60.152 57.895 11.47 0.00 38.27 4.81
2705 3277 1.190833 ACTGTCTGTGCAGAGGGGAG 61.191 60.000 11.47 7.04 38.27 4.30
2706 3278 1.897225 CTGTCTGTGCAGAGGGGAGG 61.897 65.000 11.47 0.00 38.27 4.30
2707 3279 3.005539 TCTGTGCAGAGGGGAGGC 61.006 66.667 11.47 0.00 32.82 4.70
2708 3280 4.463879 CTGTGCAGAGGGGAGGCG 62.464 72.222 2.14 0.00 0.00 5.52
2710 3282 4.459089 GTGCAGAGGGGAGGCGTC 62.459 72.222 0.00 0.00 0.00 5.19
2725 3297 3.782443 GTCCGGCGTCCATTCCCT 61.782 66.667 6.01 0.00 0.00 4.20
2726 3298 3.781307 TCCGGCGTCCATTCCCTG 61.781 66.667 6.01 0.00 0.00 4.45
2728 3300 4.473520 CGGCGTCCATTCCCTGCT 62.474 66.667 0.00 0.00 0.00 4.24
2729 3301 2.825836 GGCGTCCATTCCCTGCTG 60.826 66.667 0.00 0.00 0.00 4.41
2730 3302 3.512516 GCGTCCATTCCCTGCTGC 61.513 66.667 0.00 0.00 0.00 5.25
2731 3303 2.270205 CGTCCATTCCCTGCTGCT 59.730 61.111 0.00 0.00 0.00 4.24
2732 3304 2.110967 CGTCCATTCCCTGCTGCTG 61.111 63.158 0.00 0.00 0.00 4.41
2733 3305 2.044650 TCCATTCCCTGCTGCTGC 60.045 61.111 8.89 8.89 40.20 5.25
2734 3306 2.044252 CCATTCCCTGCTGCTGCT 60.044 61.111 17.00 0.00 40.48 4.24
2735 3307 2.415608 CCATTCCCTGCTGCTGCTG 61.416 63.158 17.00 15.58 40.48 4.41
2736 3308 1.677966 CATTCCCTGCTGCTGCTGT 60.678 57.895 17.00 0.00 40.48 4.40
2737 3309 1.076192 ATTCCCTGCTGCTGCTGTT 59.924 52.632 17.00 0.00 40.48 3.16
2738 3310 1.248785 ATTCCCTGCTGCTGCTGTTG 61.249 55.000 17.00 9.47 40.48 3.33
2739 3311 4.052229 CCCTGCTGCTGCTGTTGC 62.052 66.667 17.00 4.76 40.48 4.17
2740 3312 4.052229 CCTGCTGCTGCTGTTGCC 62.052 66.667 17.00 0.00 40.48 4.52
2741 3313 2.984155 CTGCTGCTGCTGTTGCCT 60.984 61.111 17.00 0.00 40.48 4.75
2742 3314 2.979197 CTGCTGCTGCTGTTGCCTC 61.979 63.158 17.00 0.00 40.48 4.70
2743 3315 4.099170 GCTGCTGCTGTTGCCTCG 62.099 66.667 8.53 0.00 38.71 4.63
2744 3316 4.099170 CTGCTGCTGTTGCCTCGC 62.099 66.667 0.00 0.00 38.71 5.03
2747 3319 3.730761 CTGCTGTTGCCTCGCCAC 61.731 66.667 0.00 0.00 38.71 5.01
2748 3320 4.254709 TGCTGTTGCCTCGCCACT 62.255 61.111 0.00 0.00 38.71 4.00
2749 3321 3.730761 GCTGTTGCCTCGCCACTG 61.731 66.667 0.00 0.00 0.00 3.66
2750 3322 3.730761 CTGTTGCCTCGCCACTGC 61.731 66.667 0.00 0.00 0.00 4.40
2771 3343 4.054085 TGCAGAGCACTGTGAAGC 57.946 55.556 12.86 9.31 45.04 3.86
2772 3344 1.146707 TGCAGAGCACTGTGAAGCA 59.853 52.632 12.86 11.75 45.04 3.91
2788 3360 3.611433 GCAGCAGCGATTAAACTGG 57.389 52.632 0.00 0.00 34.38 4.00
2789 3361 1.086696 GCAGCAGCGATTAAACTGGA 58.913 50.000 0.00 0.00 34.38 3.86
2790 3362 1.063174 GCAGCAGCGATTAAACTGGAG 59.937 52.381 0.00 0.00 34.38 3.86
2791 3363 2.621338 CAGCAGCGATTAAACTGGAGA 58.379 47.619 0.00 0.00 34.38 3.71
2792 3364 2.606725 CAGCAGCGATTAAACTGGAGAG 59.393 50.000 0.00 0.00 34.38 3.20
2793 3365 2.497675 AGCAGCGATTAAACTGGAGAGA 59.502 45.455 0.00 0.00 34.38 3.10
2794 3366 3.055819 AGCAGCGATTAAACTGGAGAGAA 60.056 43.478 0.00 0.00 34.38 2.87
2795 3367 3.062774 GCAGCGATTAAACTGGAGAGAAC 59.937 47.826 0.00 0.00 34.38 3.01
2796 3368 4.245660 CAGCGATTAAACTGGAGAGAACA 58.754 43.478 0.00 0.00 0.00 3.18
2797 3369 4.872691 CAGCGATTAAACTGGAGAGAACAT 59.127 41.667 0.00 0.00 0.00 2.71
2798 3370 4.872691 AGCGATTAAACTGGAGAGAACATG 59.127 41.667 0.00 0.00 0.00 3.21
2799 3371 4.494855 GCGATTAAACTGGAGAGAACATGC 60.495 45.833 0.00 0.00 0.00 4.06
2800 3372 4.034510 CGATTAAACTGGAGAGAACATGCC 59.965 45.833 0.00 0.00 0.00 4.40
2801 3373 1.813513 AAACTGGAGAGAACATGCCG 58.186 50.000 0.00 0.00 0.00 5.69
2802 3374 0.976641 AACTGGAGAGAACATGCCGA 59.023 50.000 0.00 0.00 0.00 5.54
2803 3375 0.534412 ACTGGAGAGAACATGCCGAG 59.466 55.000 0.00 0.00 0.00 4.63
2804 3376 0.809241 CTGGAGAGAACATGCCGAGC 60.809 60.000 0.00 0.00 0.00 5.03
2805 3377 1.260538 TGGAGAGAACATGCCGAGCT 61.261 55.000 0.00 0.00 0.00 4.09
2806 3378 0.809241 GGAGAGAACATGCCGAGCTG 60.809 60.000 0.00 0.00 0.00 4.24
2807 3379 0.809241 GAGAGAACATGCCGAGCTGG 60.809 60.000 0.00 0.00 42.50 4.85
2831 3403 4.170062 CCGGAGCTGCGTTGCATG 62.170 66.667 26.29 5.88 38.13 4.06
2832 3404 4.824166 CGGAGCTGCGTTGCATGC 62.824 66.667 20.53 11.82 38.13 4.06
2833 3405 4.487412 GGAGCTGCGTTGCATGCC 62.487 66.667 16.68 0.00 38.13 4.40
2834 3406 3.437795 GAGCTGCGTTGCATGCCT 61.438 61.111 16.68 2.16 38.13 4.75
2835 3407 3.392595 GAGCTGCGTTGCATGCCTC 62.393 63.158 16.68 8.66 38.13 4.70
2836 3408 3.740397 GCTGCGTTGCATGCCTCA 61.740 61.111 16.68 6.66 38.13 3.86
2837 3409 2.956194 CTGCGTTGCATGCCTCAA 59.044 55.556 16.68 0.00 38.13 3.02
2838 3410 1.443194 CTGCGTTGCATGCCTCAAC 60.443 57.895 16.68 12.12 38.13 3.18
2839 3411 2.126346 GCGTTGCATGCCTCAACC 60.126 61.111 16.68 3.98 40.35 3.77
2840 3412 2.568090 CGTTGCATGCCTCAACCC 59.432 61.111 16.68 0.00 40.35 4.11
2841 3413 2.973082 GTTGCATGCCTCAACCCC 59.027 61.111 16.68 0.00 38.21 4.95
2842 3414 1.907807 GTTGCATGCCTCAACCCCA 60.908 57.895 16.68 0.00 38.21 4.96
2843 3415 1.152376 TTGCATGCCTCAACCCCAA 60.152 52.632 16.68 0.00 0.00 4.12
2844 3416 1.470996 TTGCATGCCTCAACCCCAAC 61.471 55.000 16.68 0.00 0.00 3.77
2845 3417 2.993471 GCATGCCTCAACCCCAACG 61.993 63.158 6.36 0.00 0.00 4.10
2846 3418 1.303236 CATGCCTCAACCCCAACGA 60.303 57.895 0.00 0.00 0.00 3.85
2847 3419 1.303317 ATGCCTCAACCCCAACGAC 60.303 57.895 0.00 0.00 0.00 4.34
2848 3420 2.063015 ATGCCTCAACCCCAACGACA 62.063 55.000 0.00 0.00 0.00 4.35
2849 3421 2.258726 GCCTCAACCCCAACGACAC 61.259 63.158 0.00 0.00 0.00 3.67
2850 3422 1.959226 CCTCAACCCCAACGACACG 60.959 63.158 0.00 0.00 0.00 4.49
2851 3423 2.589442 TCAACCCCAACGACACGC 60.589 61.111 0.00 0.00 0.00 5.34
2852 3424 3.656045 CAACCCCAACGACACGCC 61.656 66.667 0.00 0.00 0.00 5.68
2853 3425 3.868985 AACCCCAACGACACGCCT 61.869 61.111 0.00 0.00 0.00 5.52
2854 3426 4.619227 ACCCCAACGACACGCCTG 62.619 66.667 0.00 0.00 0.00 4.85
2856 3428 4.619227 CCCAACGACACGCCTGGT 62.619 66.667 0.00 0.00 33.21 4.00
2857 3429 3.041940 CCAACGACACGCCTGGTC 61.042 66.667 0.00 0.00 31.33 4.02
2858 3430 2.029073 CAACGACACGCCTGGTCT 59.971 61.111 0.00 0.00 33.11 3.85
2859 3431 2.029073 AACGACACGCCTGGTCTG 59.971 61.111 0.00 0.00 33.11 3.51
2860 3432 3.515316 AACGACACGCCTGGTCTGG 62.515 63.158 0.00 0.00 33.11 3.86
2861 3433 3.680786 CGACACGCCTGGTCTGGA 61.681 66.667 0.00 0.00 33.11 3.86
2862 3434 2.048127 GACACGCCTGGTCTGGAC 60.048 66.667 0.00 0.00 32.54 4.02
2871 3443 4.736896 GGTCTGGACCGCCGTGTC 62.737 72.222 3.88 0.00 42.29 3.67
2872 3444 3.681835 GTCTGGACCGCCGTGTCT 61.682 66.667 5.86 0.00 36.79 3.41
2873 3445 3.680786 TCTGGACCGCCGTGTCTG 61.681 66.667 5.86 1.28 36.79 3.51
2874 3446 3.991051 CTGGACCGCCGTGTCTGT 61.991 66.667 5.86 0.00 36.79 3.41
2875 3447 3.916392 CTGGACCGCCGTGTCTGTC 62.916 68.421 5.86 0.00 36.79 3.51
2876 3448 3.986006 GGACCGCCGTGTCTGTCA 61.986 66.667 5.86 0.00 35.54 3.58
2877 3449 2.733593 GACCGCCGTGTCTGTCAC 60.734 66.667 0.00 0.00 43.03 3.67
2894 3466 4.948576 CGTGTACGTAGCACACCA 57.051 55.556 20.53 3.82 42.68 4.17
2895 3467 2.427360 CGTGTACGTAGCACACCAC 58.573 57.895 20.53 12.82 42.68 4.16
2896 3468 1.332180 CGTGTACGTAGCACACCACG 61.332 60.000 16.35 16.35 42.68 4.94
2897 3469 1.005294 GTGTACGTAGCACACCACGG 61.005 60.000 17.71 0.00 42.35 4.94
2898 3470 1.444895 GTACGTAGCACACCACGGG 60.445 63.158 0.00 0.00 42.35 5.28
2899 3471 1.902918 TACGTAGCACACCACGGGT 60.903 57.895 0.00 0.00 42.35 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 4.519540 TCTGCAATTAAAAGAACTGCCC 57.480 40.909 0.00 0.00 31.92 5.36
47 49 1.335132 ATATGTGTCGGGCCGGAACT 61.335 55.000 27.98 15.32 0.00 3.01
57 59 5.615708 GCTTGATTCAGCATATATGTGTCG 58.384 41.667 14.14 1.34 39.83 4.35
58 60 5.406477 TCGCTTGATTCAGCATATATGTGTC 59.594 40.000 14.14 6.36 40.09 3.67
60 62 5.851047 TCGCTTGATTCAGCATATATGTG 57.149 39.130 14.14 10.77 40.09 3.21
64 66 7.388500 TGATCATTTCGCTTGATTCAGCATATA 59.612 33.333 0.00 0.00 40.09 0.86
68 70 3.690628 TGATCATTTCGCTTGATTCAGCA 59.309 39.130 0.00 0.00 40.09 4.41
89 91 8.099364 ACTACATGGTTTGTTTGACTAGATTG 57.901 34.615 0.00 0.00 39.87 2.67
167 169 5.344743 AATCCACAGCATATATAGACCCG 57.655 43.478 0.00 0.00 0.00 5.28
173 175 8.995027 AACCAAAGAAATCCACAGCATATATA 57.005 30.769 0.00 0.00 0.00 0.86
174 176 7.902920 AACCAAAGAAATCCACAGCATATAT 57.097 32.000 0.00 0.00 0.00 0.86
175 177 7.716799 AAACCAAAGAAATCCACAGCATATA 57.283 32.000 0.00 0.00 0.00 0.86
176 178 6.610075 AAACCAAAGAAATCCACAGCATAT 57.390 33.333 0.00 0.00 0.00 1.78
181 183 5.535753 AGGAAAACCAAAGAAATCCACAG 57.464 39.130 0.00 0.00 0.00 3.66
195 197 2.867975 TCGTCGTCTTTGAAGGAAAACC 59.132 45.455 0.00 0.00 0.00 3.27
203 205 4.613944 ACATTACTGTCGTCGTCTTTGAA 58.386 39.130 0.00 0.00 0.00 2.69
236 238 5.066246 ACAATTTCAGTTTGTTTTGCCATGG 59.934 36.000 7.63 7.63 33.64 3.66
290 293 2.509052 TGACAAGTGTCCACTCGAAG 57.491 50.000 8.91 0.00 44.15 3.79
294 297 2.031682 GCAACATGACAAGTGTCCACTC 60.032 50.000 8.91 0.00 44.15 3.51
316 319 6.642683 AAGTTTATGCACGTATATATCGCC 57.357 37.500 0.00 0.00 0.00 5.54
340 343 0.774276 TGGTTGTTGCCATAGGACCA 59.226 50.000 0.00 0.00 34.99 4.02
460 463 0.839946 AGTTAGCTAGGGTGGCCATG 59.160 55.000 9.72 0.00 0.00 3.66
461 464 1.596496 AAGTTAGCTAGGGTGGCCAT 58.404 50.000 9.72 0.00 0.00 4.40
462 465 1.368374 AAAGTTAGCTAGGGTGGCCA 58.632 50.000 0.00 0.00 0.00 5.36
463 466 2.158798 CCTAAAGTTAGCTAGGGTGGCC 60.159 54.545 0.00 0.00 32.46 5.36
464 467 2.745482 GCCTAAAGTTAGCTAGGGTGGC 60.745 54.545 0.24 4.84 36.04 5.01
466 469 3.906720 TGCCTAAAGTTAGCTAGGGTG 57.093 47.619 0.24 0.00 36.04 4.61
467 470 3.370633 GCTTGCCTAAAGTTAGCTAGGGT 60.371 47.826 0.24 0.00 38.25 4.34
468 471 3.206964 GCTTGCCTAAAGTTAGCTAGGG 58.793 50.000 0.24 0.00 38.25 3.53
469 472 3.623510 GTGCTTGCCTAAAGTTAGCTAGG 59.376 47.826 0.00 0.00 38.25 3.02
470 473 4.253685 TGTGCTTGCCTAAAGTTAGCTAG 58.746 43.478 0.00 0.00 38.25 3.42
471 474 4.280436 TGTGCTTGCCTAAAGTTAGCTA 57.720 40.909 0.00 0.00 38.25 3.32
472 475 3.140325 TGTGCTTGCCTAAAGTTAGCT 57.860 42.857 0.00 0.00 38.25 3.32
473 476 4.440839 AATGTGCTTGCCTAAAGTTAGC 57.559 40.909 0.00 0.00 38.25 3.09
497 500 7.668469 ACATATAAACGAAAGGGAAAAGGTCTT 59.332 33.333 0.00 0.00 0.00 3.01
523 526 6.609616 ACAAAGGGACAAAAGGTCTTTATCAA 59.390 34.615 0.00 0.00 46.16 2.57
538 541 8.415950 ACAATCAACATATAAACAAAGGGACA 57.584 30.769 0.00 0.00 0.00 4.02
585 588 3.852578 AGATGTATCCTTTTGGGTGGTCT 59.147 43.478 0.00 0.00 40.87 3.85
588 591 4.860022 AGAAGATGTATCCTTTTGGGTGG 58.140 43.478 0.00 0.00 40.87 4.61
645 648 8.482128 TGTCATTTTAGGGTCATGAAAAACTTT 58.518 29.630 0.00 0.00 0.00 2.66
654 657 7.587037 ATTGGTATGTCATTTTAGGGTCATG 57.413 36.000 0.00 0.00 0.00 3.07
674 677 9.418045 CAGTTTATTAACTTTGGGTTGTATTGG 57.582 33.333 0.00 0.00 41.85 3.16
680 683 7.013846 TGGTCTCAGTTTATTAACTTTGGGTTG 59.986 37.037 0.00 0.00 41.85 3.77
684 687 6.072119 GGGTGGTCTCAGTTTATTAACTTTGG 60.072 42.308 0.00 0.00 41.85 3.28
698 701 1.687493 GGAGGAGGGGTGGTCTCAG 60.687 68.421 0.00 0.00 33.18 3.35
714 717 7.735326 TTTTCATTTATTTATTTCCCGGGGA 57.265 32.000 23.50 12.99 0.00 4.81
776 779 3.311110 GGACAGTCCGAGCCACCA 61.311 66.667 3.05 0.00 0.00 4.17
778 781 2.262915 CTGGACAGTCCGAGCCAC 59.737 66.667 15.24 0.00 40.17 5.01
780 783 3.775654 CCCTGGACAGTCCGAGCC 61.776 72.222 15.24 0.00 40.17 4.70
781 784 2.997897 ACCCTGGACAGTCCGAGC 60.998 66.667 15.24 0.00 40.17 5.03
782 785 2.352032 GGACCCTGGACAGTCCGAG 61.352 68.421 15.24 12.52 42.98 4.63
783 786 2.283676 GGACCCTGGACAGTCCGA 60.284 66.667 15.24 3.52 42.98 4.55
786 789 1.003233 GCTTGGACCCTGGACAGTC 60.003 63.158 0.00 0.00 0.00 3.51
827 830 9.858247 CATGTCATATTTTGCATTAGAAATTGC 57.142 29.630 0.00 0.00 39.33 3.56
834 837 8.637281 TTGCTTCATGTCATATTTTGCATTAG 57.363 30.769 0.00 0.00 0.00 1.73
835 838 9.602568 AATTGCTTCATGTCATATTTTGCATTA 57.397 25.926 0.00 0.00 0.00 1.90
836 839 8.500753 AATTGCTTCATGTCATATTTTGCATT 57.499 26.923 0.00 0.00 0.00 3.56
1329 1733 1.070445 CGGGAAGCATAGGAGCCAG 59.930 63.158 0.00 0.00 34.23 4.85
1866 2282 3.007398 TCTTCTTCTTCTTCAGGCTCACC 59.993 47.826 0.00 0.00 0.00 4.02
1867 2283 4.264460 TCTTCTTCTTCTTCAGGCTCAC 57.736 45.455 0.00 0.00 0.00 3.51
1871 2287 4.694982 CCTTCTTCTTCTTCTTCTTCAGGC 59.305 45.833 0.00 0.00 0.00 4.85
1872 2288 5.244755 CCCTTCTTCTTCTTCTTCTTCAGG 58.755 45.833 0.00 0.00 0.00 3.86
1873 2289 5.012561 TCCCCTTCTTCTTCTTCTTCTTCAG 59.987 44.000 0.00 0.00 0.00 3.02
1874 2290 4.907875 TCCCCTTCTTCTTCTTCTTCTTCA 59.092 41.667 0.00 0.00 0.00 3.02
1921 2337 3.443479 TTGGTTGGTTGGGGCCCT 61.443 61.111 25.93 0.00 0.00 5.19
1922 2338 3.238497 GTTGGTTGGTTGGGGCCC 61.238 66.667 18.17 18.17 0.00 5.80
1923 2339 3.238497 GGTTGGTTGGTTGGGGCC 61.238 66.667 0.00 0.00 0.00 5.80
1924 2340 1.414866 AATGGTTGGTTGGTTGGGGC 61.415 55.000 0.00 0.00 0.00 5.80
1925 2341 0.396060 CAATGGTTGGTTGGTTGGGG 59.604 55.000 0.00 0.00 0.00 4.96
1926 2342 1.127343 ACAATGGTTGGTTGGTTGGG 58.873 50.000 0.00 0.00 34.12 4.12
1927 2343 4.615588 ATTACAATGGTTGGTTGGTTGG 57.384 40.909 0.00 0.00 34.12 3.77
1928 2344 8.062065 AGTATATTACAATGGTTGGTTGGTTG 57.938 34.615 0.00 0.00 34.12 3.77
1929 2345 7.340999 GGAGTATATTACAATGGTTGGTTGGTT 59.659 37.037 0.00 0.00 34.12 3.67
1930 2346 6.831868 GGAGTATATTACAATGGTTGGTTGGT 59.168 38.462 0.00 0.00 34.12 3.67
1954 2370 6.049149 CACCAATGGATTGTACTACAGTAGG 58.951 44.000 6.16 0.00 36.06 3.18
1979 2398 5.494724 CGGCCTCTACCTATATGTACAGTA 58.505 45.833 0.00 0.00 0.00 2.74
2017 2437 2.253758 CCGAATGCCGAATGCCGAT 61.254 57.895 0.00 0.00 41.76 4.18
2018 2438 2.894879 CCGAATGCCGAATGCCGA 60.895 61.111 0.00 0.00 41.76 5.54
2019 2439 4.612536 GCCGAATGCCGAATGCCG 62.613 66.667 0.00 0.00 41.76 5.69
2020 2440 2.737932 GATGCCGAATGCCGAATGCC 62.738 60.000 0.00 0.00 41.76 4.40
2021 2441 1.370900 GATGCCGAATGCCGAATGC 60.371 57.895 0.00 0.00 41.76 3.56
2022 2442 0.040692 CAGATGCCGAATGCCGAATG 60.041 55.000 0.00 0.00 41.76 2.67
2023 2443 1.168407 CCAGATGCCGAATGCCGAAT 61.168 55.000 0.00 0.00 41.76 3.34
2024 2444 1.819208 CCAGATGCCGAATGCCGAA 60.819 57.895 0.00 0.00 41.76 4.30
2025 2445 2.203056 CCAGATGCCGAATGCCGA 60.203 61.111 0.00 0.00 41.76 5.54
2026 2446 3.957535 GCCAGATGCCGAATGCCG 61.958 66.667 0.00 0.00 40.16 5.69
2027 2447 2.138656 GATGCCAGATGCCGAATGCC 62.139 60.000 0.00 0.00 40.16 4.40
2028 2448 1.285023 GATGCCAGATGCCGAATGC 59.715 57.895 0.00 0.00 40.16 3.56
2029 2449 1.521450 GGGATGCCAGATGCCGAATG 61.521 60.000 0.00 0.00 40.16 2.67
2065 2513 3.069872 GTCACCTGCTCATCTCATCTCAT 59.930 47.826 0.00 0.00 0.00 2.90
2066 2514 2.429971 GTCACCTGCTCATCTCATCTCA 59.570 50.000 0.00 0.00 0.00 3.27
2068 2516 2.694628 GAGTCACCTGCTCATCTCATCT 59.305 50.000 0.00 0.00 33.45 2.90
2069 2517 2.543445 CGAGTCACCTGCTCATCTCATC 60.543 54.545 0.00 0.00 33.45 2.92
2070 2518 1.408340 CGAGTCACCTGCTCATCTCAT 59.592 52.381 0.00 0.00 33.45 2.90
2071 2519 0.813821 CGAGTCACCTGCTCATCTCA 59.186 55.000 0.00 0.00 33.45 3.27
2072 2520 0.527385 GCGAGTCACCTGCTCATCTC 60.527 60.000 0.00 0.00 33.45 2.75
2073 2521 0.969917 AGCGAGTCACCTGCTCATCT 60.970 55.000 0.00 0.00 32.44 2.90
2156 2608 9.344772 CTCCTATCTATCTATGTATGTGTACCC 57.655 40.741 0.00 0.00 0.00 3.69
2180 2634 3.618594 CCCGTGCATATATGTATGTGCTC 59.381 47.826 18.24 14.81 46.74 4.26
2181 2635 3.007940 ACCCGTGCATATATGTATGTGCT 59.992 43.478 18.24 1.84 46.74 4.40
2182 2636 3.125146 CACCCGTGCATATATGTATGTGC 59.875 47.826 18.24 12.95 46.78 4.57
2183 2637 3.684305 CCACCCGTGCATATATGTATGTG 59.316 47.826 18.24 17.42 39.90 3.21
2198 2654 1.141019 CAATCGTCGATCCACCCGT 59.859 57.895 8.45 0.00 0.00 5.28
2244 2703 7.117523 AGCATAAGAATCGAGTTAATCATCAGC 59.882 37.037 0.00 0.00 0.00 4.26
2245 2704 8.531622 AGCATAAGAATCGAGTTAATCATCAG 57.468 34.615 0.00 0.00 0.00 2.90
2248 2707 8.147058 ACAGAGCATAAGAATCGAGTTAATCAT 58.853 33.333 0.00 0.00 0.00 2.45
2249 2708 7.492524 ACAGAGCATAAGAATCGAGTTAATCA 58.507 34.615 0.00 0.00 0.00 2.57
2250 2709 7.938563 ACAGAGCATAAGAATCGAGTTAATC 57.061 36.000 0.00 0.00 0.00 1.75
2251 2710 8.200792 AGAACAGAGCATAAGAATCGAGTTAAT 58.799 33.333 0.00 0.00 0.00 1.40
2252 2711 7.548097 AGAACAGAGCATAAGAATCGAGTTAA 58.452 34.615 0.00 0.00 0.00 2.01
2261 2720 6.291377 AGAACACAAGAACAGAGCATAAGAA 58.709 36.000 0.00 0.00 0.00 2.52
2268 2727 2.287248 GCCAAGAACACAAGAACAGAGC 60.287 50.000 0.00 0.00 0.00 4.09
2302 2761 6.543831 TCAACCAAAAAGAAGAAGAAGAGGAG 59.456 38.462 0.00 0.00 0.00 3.69
2316 2789 4.739716 CACTGAACCGAATCAACCAAAAAG 59.260 41.667 0.00 0.00 0.00 2.27
2317 2790 4.440802 CCACTGAACCGAATCAACCAAAAA 60.441 41.667 0.00 0.00 0.00 1.94
2319 2792 2.621055 CCACTGAACCGAATCAACCAAA 59.379 45.455 0.00 0.00 0.00 3.28
2356 2835 8.972349 CAAAAGGAAGCTTAGATGTTTTCTTTC 58.028 33.333 0.00 0.00 35.75 2.62
2361 2840 6.976934 TCCAAAAGGAAGCTTAGATGTTTT 57.023 33.333 0.00 0.00 0.00 2.43
2384 2941 0.179009 ACACACAGGCTCAGTTGCAT 60.179 50.000 0.00 0.00 34.04 3.96
2385 2942 1.096967 CACACACAGGCTCAGTTGCA 61.097 55.000 0.00 0.00 34.04 4.08
2386 2943 1.097547 ACACACACAGGCTCAGTTGC 61.098 55.000 0.00 0.00 0.00 4.17
2387 2944 0.940126 GACACACACAGGCTCAGTTG 59.060 55.000 0.00 0.00 0.00 3.16
2388 2945 0.833287 AGACACACACAGGCTCAGTT 59.167 50.000 0.00 0.00 0.00 3.16
2389 2946 0.390860 GAGACACACACAGGCTCAGT 59.609 55.000 0.00 0.00 0.00 3.41
2390 2947 0.678395 AGAGACACACACAGGCTCAG 59.322 55.000 0.00 0.00 0.00 3.35
2391 2948 0.390492 CAGAGACACACACAGGCTCA 59.610 55.000 0.00 0.00 0.00 4.26
2392 2949 0.390860 ACAGAGACACACACAGGCTC 59.609 55.000 0.00 0.00 0.00 4.70
2393 2950 0.390860 GACAGAGACACACACAGGCT 59.609 55.000 0.00 0.00 0.00 4.58
2394 2951 0.390860 AGACAGAGACACACACAGGC 59.609 55.000 0.00 0.00 0.00 4.85
2395 2952 1.410517 ACAGACAGAGACACACACAGG 59.589 52.381 0.00 0.00 0.00 4.00
2396 2953 2.099756 TCACAGACAGAGACACACACAG 59.900 50.000 0.00 0.00 0.00 3.66
2397 2954 2.099405 TCACAGACAGAGACACACACA 58.901 47.619 0.00 0.00 0.00 3.72
2398 2955 2.871182 TCACAGACAGAGACACACAC 57.129 50.000 0.00 0.00 0.00 3.82
2399 2956 2.297315 GGATCACAGACAGAGACACACA 59.703 50.000 0.00 0.00 0.00 3.72
2400 2957 2.353208 GGGATCACAGACAGAGACACAC 60.353 54.545 0.00 0.00 0.00 3.82
2401 2958 1.895798 GGGATCACAGACAGAGACACA 59.104 52.381 0.00 0.00 0.00 3.72
2402 2959 1.895798 TGGGATCACAGACAGAGACAC 59.104 52.381 0.00 0.00 0.00 3.67
2403 2960 2.309136 TGGGATCACAGACAGAGACA 57.691 50.000 0.00 0.00 0.00 3.41
2404 2961 2.741228 GCATGGGATCACAGACAGAGAC 60.741 54.545 2.98 0.00 0.00 3.36
2405 2962 1.483827 GCATGGGATCACAGACAGAGA 59.516 52.381 2.98 0.00 0.00 3.10
2406 2963 1.474677 GGCATGGGATCACAGACAGAG 60.475 57.143 2.98 0.00 0.00 3.35
2407 2964 0.543277 GGCATGGGATCACAGACAGA 59.457 55.000 2.98 0.00 0.00 3.41
2408 2965 0.253894 TGGCATGGGATCACAGACAG 59.746 55.000 2.98 0.00 0.00 3.51
2409 2966 0.697658 TTGGCATGGGATCACAGACA 59.302 50.000 2.98 0.90 0.00 3.41
2410 2967 1.098050 GTTGGCATGGGATCACAGAC 58.902 55.000 2.98 0.00 0.00 3.51
2411 2968 0.994247 AGTTGGCATGGGATCACAGA 59.006 50.000 2.98 0.00 0.00 3.41
2412 2969 1.100510 CAGTTGGCATGGGATCACAG 58.899 55.000 2.98 0.00 0.00 3.66
2413 2970 0.966875 GCAGTTGGCATGGGATCACA 60.967 55.000 0.00 0.00 43.97 3.58
2414 2971 1.811860 GCAGTTGGCATGGGATCAC 59.188 57.895 0.00 0.00 43.97 3.06
2415 2972 2.152602 TGGCAGTTGGCATGGGATCA 62.153 55.000 4.06 0.00 46.12 2.92
2416 2973 1.380246 TGGCAGTTGGCATGGGATC 60.380 57.895 4.06 0.00 46.12 3.36
2417 2974 2.772224 TGGCAGTTGGCATGGGAT 59.228 55.556 4.06 0.00 46.12 3.85
2424 2981 3.818787 CCGAGCATGGCAGTTGGC 61.819 66.667 0.00 0.00 43.74 4.52
2474 3031 2.727777 CTCGAACACGAACAAGACAGA 58.272 47.619 0.00 0.00 35.63 3.41
2475 3032 1.190323 GCTCGAACACGAACAAGACAG 59.810 52.381 0.00 0.00 35.63 3.51
2480 3037 1.817217 CTGCGCTCGAACACGAACAA 61.817 55.000 9.73 0.00 35.63 2.83
2485 3042 1.669158 CTTCTCTGCGCTCGAACACG 61.669 60.000 9.73 0.00 0.00 4.49
2487 3044 0.313987 TTCTTCTCTGCGCTCGAACA 59.686 50.000 9.73 0.00 0.00 3.18
2489 3046 0.881796 TCTTCTTCTCTGCGCTCGAA 59.118 50.000 9.73 7.66 0.00 3.71
2490 3047 0.881796 TTCTTCTTCTCTGCGCTCGA 59.118 50.000 9.73 4.18 0.00 4.04
2491 3048 1.135546 TCTTCTTCTTCTCTGCGCTCG 60.136 52.381 9.73 0.00 0.00 5.03
2493 3050 1.615883 TGTCTTCTTCTTCTCTGCGCT 59.384 47.619 9.73 0.00 0.00 5.92
2495 3052 3.241701 GTCTGTCTTCTTCTTCTCTGCG 58.758 50.000 0.00 0.00 0.00 5.18
2498 3055 3.254657 CCGTGTCTGTCTTCTTCTTCTCT 59.745 47.826 0.00 0.00 0.00 3.10
2499 3056 3.253677 TCCGTGTCTGTCTTCTTCTTCTC 59.746 47.826 0.00 0.00 0.00 2.87
2500 3057 3.223435 TCCGTGTCTGTCTTCTTCTTCT 58.777 45.455 0.00 0.00 0.00 2.85
2501 3058 3.570559 CTCCGTGTCTGTCTTCTTCTTC 58.429 50.000 0.00 0.00 0.00 2.87
2502 3059 2.288518 GCTCCGTGTCTGTCTTCTTCTT 60.289 50.000 0.00 0.00 0.00 2.52
2503 3060 1.271102 GCTCCGTGTCTGTCTTCTTCT 59.729 52.381 0.00 0.00 0.00 2.85
2505 3062 1.040646 TGCTCCGTGTCTGTCTTCTT 58.959 50.000 0.00 0.00 0.00 2.52
2529 3094 2.359975 GGAGCCGTCCCTTGTTGG 60.360 66.667 0.00 0.00 36.76 3.77
2530 3095 2.742372 CGGAGCCGTCCCTTGTTG 60.742 66.667 0.00 0.00 40.20 3.33
2540 3105 1.463444 CTTAACCAGAAAACGGAGCCG 59.537 52.381 7.48 7.48 46.03 5.52
2562 3127 3.920446 TGCTTCATTTCAGCTACGTACA 58.080 40.909 0.00 0.00 38.19 2.90
2563 3128 4.921470 TTGCTTCATTTCAGCTACGTAC 57.079 40.909 0.00 0.00 38.19 3.67
2564 3129 4.142902 GCTTTGCTTCATTTCAGCTACGTA 60.143 41.667 0.00 0.00 38.19 3.57
2565 3130 3.365364 GCTTTGCTTCATTTCAGCTACGT 60.365 43.478 0.00 0.00 38.19 3.57
2591 3156 2.662857 GCTCACGTGACAGCTGCA 60.663 61.111 15.76 10.30 32.48 4.41
2594 3159 1.301244 CCTTGCTCACGTGACAGCT 60.301 57.895 24.72 0.00 36.53 4.24
2595 3160 0.880278 TTCCTTGCTCACGTGACAGC 60.880 55.000 15.76 18.14 36.08 4.40
2596 3161 1.143305 CTTCCTTGCTCACGTGACAG 58.857 55.000 15.76 10.65 0.00 3.51
2597 3162 0.249868 CCTTCCTTGCTCACGTGACA 60.250 55.000 15.76 14.82 0.00 3.58
2598 3163 1.569479 GCCTTCCTTGCTCACGTGAC 61.569 60.000 15.76 12.31 0.00 3.67
2608 3180 1.785041 CGTGTGTGTGGCCTTCCTTG 61.785 60.000 3.32 0.00 0.00 3.61
2618 3190 1.011242 CTTTGTCGGCGTGTGTGTG 60.011 57.895 6.85 0.00 0.00 3.82
2622 3194 0.874175 TCACTCTTTGTCGGCGTGTG 60.874 55.000 6.85 6.32 0.00 3.82
2629 3201 2.606725 GCCATCTCATCACTCTTTGTCG 59.393 50.000 0.00 0.00 0.00 4.35
2639 3211 0.250166 CAGCGATGGCCATCTCATCA 60.250 55.000 36.51 0.15 40.58 3.07
2640 3212 0.034476 TCAGCGATGGCCATCTCATC 59.966 55.000 36.51 23.93 41.24 2.92
2641 3213 0.691332 ATCAGCGATGGCCATCTCAT 59.309 50.000 36.51 22.41 41.24 2.90
2659 3231 2.962569 CAACAGCAGCAGCAGCAT 59.037 55.556 12.92 0.00 45.49 3.79
2660 3232 3.973516 GCAACAGCAGCAGCAGCA 61.974 61.111 12.92 0.00 45.49 4.41
2662 3234 3.590443 GACGCAACAGCAGCAGCAG 62.590 63.158 3.17 0.00 45.49 4.24
2663 3235 3.653009 GACGCAACAGCAGCAGCA 61.653 61.111 3.17 0.00 45.49 4.41
2664 3236 4.731503 CGACGCAACAGCAGCAGC 62.732 66.667 0.00 0.00 42.56 5.25
2665 3237 2.288926 GATCGACGCAACAGCAGCAG 62.289 60.000 0.00 0.00 0.00 4.24
2666 3238 2.357396 ATCGACGCAACAGCAGCA 60.357 55.556 0.00 0.00 0.00 4.41
2667 3239 2.397252 GATCGACGCAACAGCAGC 59.603 61.111 0.00 0.00 0.00 5.25
2668 3240 1.737735 TGGATCGACGCAACAGCAG 60.738 57.895 0.00 0.00 0.00 4.24
2669 3241 2.027073 GTGGATCGACGCAACAGCA 61.027 57.895 0.00 0.00 0.00 4.41
2670 3242 1.738099 AGTGGATCGACGCAACAGC 60.738 57.895 1.90 0.00 0.00 4.40
2671 3243 0.667487 ACAGTGGATCGACGCAACAG 60.667 55.000 1.90 0.00 0.00 3.16
2672 3244 0.666274 GACAGTGGATCGACGCAACA 60.666 55.000 1.90 0.00 0.00 3.33
2673 3245 0.388649 AGACAGTGGATCGACGCAAC 60.389 55.000 1.90 0.00 0.00 4.17
2674 3246 0.388520 CAGACAGTGGATCGACGCAA 60.389 55.000 1.90 0.00 0.00 4.85
2675 3247 1.212751 CAGACAGTGGATCGACGCA 59.787 57.895 1.90 0.00 0.00 5.24
2676 3248 1.073216 CACAGACAGTGGATCGACGC 61.073 60.000 1.90 0.00 44.69 5.19
2677 3249 3.021541 CACAGACAGTGGATCGACG 57.978 57.895 1.90 0.73 44.69 5.12
2686 3258 1.152247 TCCCCTCTGCACAGACAGT 60.152 57.895 0.00 0.00 38.84 3.55
2687 3259 1.595882 CTCCCCTCTGCACAGACAG 59.404 63.158 0.00 0.00 39.12 3.51
2688 3260 1.915266 CCTCCCCTCTGCACAGACA 60.915 63.158 0.00 0.00 33.22 3.41
2689 3261 2.985456 CCTCCCCTCTGCACAGAC 59.015 66.667 0.00 0.00 33.22 3.51
2690 3262 3.005539 GCCTCCCCTCTGCACAGA 61.006 66.667 0.00 0.00 35.85 3.41
2691 3263 4.463879 CGCCTCCCCTCTGCACAG 62.464 72.222 0.00 0.00 0.00 3.66
2693 3265 4.459089 GACGCCTCCCCTCTGCAC 62.459 72.222 0.00 0.00 0.00 4.57
2708 3280 3.782443 AGGGAATGGACGCCGGAC 61.782 66.667 5.05 0.00 0.00 4.79
2709 3281 3.781307 CAGGGAATGGACGCCGGA 61.781 66.667 5.05 0.00 0.00 5.14
2711 3283 4.473520 AGCAGGGAATGGACGCCG 62.474 66.667 0.00 0.00 0.00 6.46
2712 3284 2.825836 CAGCAGGGAATGGACGCC 60.826 66.667 0.00 0.00 0.00 5.68
2713 3285 3.512516 GCAGCAGGGAATGGACGC 61.513 66.667 0.00 0.00 0.00 5.19
2714 3286 2.110967 CAGCAGCAGGGAATGGACG 61.111 63.158 0.00 0.00 0.00 4.79
2715 3287 2.413142 GCAGCAGCAGGGAATGGAC 61.413 63.158 0.00 0.00 41.58 4.02
2716 3288 2.044650 GCAGCAGCAGGGAATGGA 60.045 61.111 0.00 0.00 41.58 3.41
2717 3289 2.044252 AGCAGCAGCAGGGAATGG 60.044 61.111 3.17 0.00 45.49 3.16
2718 3290 1.248785 AACAGCAGCAGCAGGGAATG 61.249 55.000 3.17 0.00 45.49 2.67
2719 3291 1.076192 AACAGCAGCAGCAGGGAAT 59.924 52.632 3.17 0.00 45.49 3.01
2720 3292 1.900016 CAACAGCAGCAGCAGGGAA 60.900 57.895 3.17 0.00 45.49 3.97
2721 3293 2.281970 CAACAGCAGCAGCAGGGA 60.282 61.111 3.17 0.00 45.49 4.20
2722 3294 4.052229 GCAACAGCAGCAGCAGGG 62.052 66.667 3.17 0.00 45.49 4.45
2723 3295 4.052229 GGCAACAGCAGCAGCAGG 62.052 66.667 3.17 0.00 45.49 4.85
2724 3296 2.979197 GAGGCAACAGCAGCAGCAG 61.979 63.158 3.17 0.00 45.49 4.24
2725 3297 2.981909 GAGGCAACAGCAGCAGCA 60.982 61.111 3.17 0.00 45.49 4.41
2726 3298 4.099170 CGAGGCAACAGCAGCAGC 62.099 66.667 0.00 0.00 42.56 5.25
2727 3299 4.099170 GCGAGGCAACAGCAGCAG 62.099 66.667 0.00 0.00 41.34 4.24
2730 3302 3.730761 GTGGCGAGGCAACAGCAG 61.731 66.667 0.00 0.00 43.12 4.24
2731 3303 4.254709 AGTGGCGAGGCAACAGCA 62.255 61.111 0.00 0.00 43.12 4.41
2732 3304 3.730761 CAGTGGCGAGGCAACAGC 61.731 66.667 0.00 0.00 34.42 4.40
2733 3305 3.730761 GCAGTGGCGAGGCAACAG 61.731 66.667 0.00 0.00 34.42 3.16
2754 3326 0.883370 CTGCTTCACAGTGCTCTGCA 60.883 55.000 15.50 6.63 44.77 4.41
2755 3327 1.867615 CTGCTTCACAGTGCTCTGC 59.132 57.895 15.50 2.04 44.77 4.26
2764 3336 1.807139 TTAATCGCTGCTGCTTCACA 58.193 45.000 14.03 0.00 36.97 3.58
2765 3337 2.160417 AGTTTAATCGCTGCTGCTTCAC 59.840 45.455 14.03 3.52 36.97 3.18
2766 3338 2.160219 CAGTTTAATCGCTGCTGCTTCA 59.840 45.455 14.03 0.00 36.97 3.02
2767 3339 2.476854 CCAGTTTAATCGCTGCTGCTTC 60.477 50.000 14.03 0.00 36.97 3.86
2768 3340 1.470098 CCAGTTTAATCGCTGCTGCTT 59.530 47.619 14.03 4.75 36.97 3.91
2769 3341 1.089920 CCAGTTTAATCGCTGCTGCT 58.910 50.000 14.03 0.00 36.97 4.24
2770 3342 1.063174 CTCCAGTTTAATCGCTGCTGC 59.937 52.381 5.34 5.34 0.00 5.25
2771 3343 2.606725 CTCTCCAGTTTAATCGCTGCTG 59.393 50.000 0.00 0.00 0.00 4.41
2772 3344 2.497675 TCTCTCCAGTTTAATCGCTGCT 59.502 45.455 0.00 0.00 0.00 4.24
2773 3345 2.893637 TCTCTCCAGTTTAATCGCTGC 58.106 47.619 0.00 0.00 0.00 5.25
2774 3346 4.245660 TGTTCTCTCCAGTTTAATCGCTG 58.754 43.478 0.00 0.00 0.00 5.18
2775 3347 4.537135 TGTTCTCTCCAGTTTAATCGCT 57.463 40.909 0.00 0.00 0.00 4.93
2776 3348 4.494855 GCATGTTCTCTCCAGTTTAATCGC 60.495 45.833 0.00 0.00 0.00 4.58
2777 3349 4.034510 GGCATGTTCTCTCCAGTTTAATCG 59.965 45.833 0.00 0.00 0.00 3.34
2778 3350 4.034510 CGGCATGTTCTCTCCAGTTTAATC 59.965 45.833 0.00 0.00 0.00 1.75
2779 3351 3.941483 CGGCATGTTCTCTCCAGTTTAAT 59.059 43.478 0.00 0.00 0.00 1.40
2780 3352 3.007506 TCGGCATGTTCTCTCCAGTTTAA 59.992 43.478 0.00 0.00 0.00 1.52
2781 3353 2.565391 TCGGCATGTTCTCTCCAGTTTA 59.435 45.455 0.00 0.00 0.00 2.01
2782 3354 1.347707 TCGGCATGTTCTCTCCAGTTT 59.652 47.619 0.00 0.00 0.00 2.66
2783 3355 0.976641 TCGGCATGTTCTCTCCAGTT 59.023 50.000 0.00 0.00 0.00 3.16
2784 3356 0.534412 CTCGGCATGTTCTCTCCAGT 59.466 55.000 0.00 0.00 0.00 4.00
2785 3357 0.809241 GCTCGGCATGTTCTCTCCAG 60.809 60.000 0.00 0.00 0.00 3.86
2786 3358 1.219124 GCTCGGCATGTTCTCTCCA 59.781 57.895 0.00 0.00 0.00 3.86
2787 3359 0.809241 CAGCTCGGCATGTTCTCTCC 60.809 60.000 0.00 0.00 0.00 3.71
2788 3360 0.809241 CCAGCTCGGCATGTTCTCTC 60.809 60.000 0.00 0.00 0.00 3.20
2789 3361 1.220206 CCAGCTCGGCATGTTCTCT 59.780 57.895 0.00 0.00 0.00 3.10
2790 3362 3.805267 CCAGCTCGGCATGTTCTC 58.195 61.111 0.00 0.00 0.00 2.87
2814 3386 4.170062 CATGCAACGCAGCTCCGG 62.170 66.667 0.33 0.00 43.65 5.14
2815 3387 4.824166 GCATGCAACGCAGCTCCG 62.824 66.667 14.21 0.00 43.65 4.63
2816 3388 4.487412 GGCATGCAACGCAGCTCC 62.487 66.667 21.36 0.00 43.65 4.70
2817 3389 3.392595 GAGGCATGCAACGCAGCTC 62.393 63.158 21.36 10.92 43.65 4.09
2818 3390 3.437795 GAGGCATGCAACGCAGCT 61.438 61.111 21.36 4.91 43.65 4.24
2819 3391 3.271706 TTGAGGCATGCAACGCAGC 62.272 57.895 21.36 0.00 43.65 5.25
2820 3392 1.443194 GTTGAGGCATGCAACGCAG 60.443 57.895 21.36 0.00 43.65 5.18
2821 3393 2.644418 GTTGAGGCATGCAACGCA 59.356 55.556 21.36 8.20 44.86 5.24
2822 3394 2.126346 GGTTGAGGCATGCAACGC 60.126 61.111 21.36 5.33 44.92 4.84
2823 3395 2.568090 GGGTTGAGGCATGCAACG 59.432 61.111 21.36 0.00 44.92 4.10
2824 3396 1.470996 TTGGGGTTGAGGCATGCAAC 61.471 55.000 21.36 15.01 43.64 4.17
2825 3397 1.152376 TTGGGGTTGAGGCATGCAA 60.152 52.632 21.36 1.85 0.00 4.08
2826 3398 1.907807 GTTGGGGTTGAGGCATGCA 60.908 57.895 21.36 0.00 0.00 3.96
2827 3399 2.973082 GTTGGGGTTGAGGCATGC 59.027 61.111 9.90 9.90 0.00 4.06
2828 3400 1.303236 TCGTTGGGGTTGAGGCATG 60.303 57.895 0.00 0.00 0.00 4.06
2829 3401 1.303317 GTCGTTGGGGTTGAGGCAT 60.303 57.895 0.00 0.00 0.00 4.40
2830 3402 2.112297 GTCGTTGGGGTTGAGGCA 59.888 61.111 0.00 0.00 0.00 4.75
2831 3403 2.112297 TGTCGTTGGGGTTGAGGC 59.888 61.111 0.00 0.00 0.00 4.70
2832 3404 1.959226 CGTGTCGTTGGGGTTGAGG 60.959 63.158 0.00 0.00 0.00 3.86
2833 3405 2.604174 GCGTGTCGTTGGGGTTGAG 61.604 63.158 0.00 0.00 0.00 3.02
2834 3406 2.589442 GCGTGTCGTTGGGGTTGA 60.589 61.111 0.00 0.00 0.00 3.18
2835 3407 3.656045 GGCGTGTCGTTGGGGTTG 61.656 66.667 0.00 0.00 0.00 3.77
2836 3408 3.868985 AGGCGTGTCGTTGGGGTT 61.869 61.111 0.00 0.00 0.00 4.11
2837 3409 4.619227 CAGGCGTGTCGTTGGGGT 62.619 66.667 0.00 0.00 0.00 4.95
2839 3411 4.619227 ACCAGGCGTGTCGTTGGG 62.619 66.667 5.57 6.65 37.78 4.12
2840 3412 3.041940 GACCAGGCGTGTCGTTGG 61.042 66.667 5.57 11.11 38.77 3.77
2841 3413 2.029073 AGACCAGGCGTGTCGTTG 59.971 61.111 5.57 0.00 37.80 4.10
2842 3414 2.029073 CAGACCAGGCGTGTCGTT 59.971 61.111 5.57 0.00 37.80 3.85
2843 3415 3.991051 CCAGACCAGGCGTGTCGT 61.991 66.667 5.57 0.00 37.80 4.34
2844 3416 3.680786 TCCAGACCAGGCGTGTCG 61.681 66.667 5.57 0.00 37.80 4.35
2845 3417 2.048127 GTCCAGACCAGGCGTGTC 60.048 66.667 5.57 3.56 0.00 3.67
2855 3427 3.681835 AGACACGGCGGTCCAGAC 61.682 66.667 19.96 3.28 38.59 3.51
2856 3428 3.680786 CAGACACGGCGGTCCAGA 61.681 66.667 19.96 0.00 38.59 3.86
2857 3429 3.916392 GACAGACACGGCGGTCCAG 62.916 68.421 19.96 16.24 38.59 3.86
2858 3430 3.986006 GACAGACACGGCGGTCCA 61.986 66.667 19.96 0.00 38.59 4.02
2859 3431 3.986006 TGACAGACACGGCGGTCC 61.986 66.667 19.96 9.46 38.59 4.46
2860 3432 2.733593 GTGACAGACACGGCGGTC 60.734 66.667 13.24 15.69 39.78 4.79
2878 3450 1.005294 CCGTGGTGTGCTACGTACAC 61.005 60.000 10.91 10.91 46.10 2.90
2879 3451 1.286570 CCGTGGTGTGCTACGTACA 59.713 57.895 0.00 0.00 46.10 2.90
2880 3452 1.444895 CCCGTGGTGTGCTACGTAC 60.445 63.158 0.00 0.00 46.10 3.67
2881 3453 1.902918 ACCCGTGGTGTGCTACGTA 60.903 57.895 0.00 0.00 46.10 3.57
2882 3454 3.228759 ACCCGTGGTGTGCTACGT 61.229 61.111 0.00 0.00 46.10 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.