Multiple sequence alignment - TraesCS5B01G007700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G007700 chr5B 100.000 2477 0 0 1 2477 8879670 8877194 0.000000e+00 4575.0
1 TraesCS5B01G007700 chr2B 95.875 1503 60 2 1 1503 382564153 382562653 0.000000e+00 2431.0
2 TraesCS5B01G007700 chr2B 95.126 1313 57 5 197 1507 593651910 593650603 0.000000e+00 2063.0
3 TraesCS5B01G007700 chr3B 95.748 1505 62 2 1 1505 456319620 456318118 0.000000e+00 2423.0
4 TraesCS5B01G007700 chr4B 95.618 1506 62 1 1 1506 232153487 232154988 0.000000e+00 2412.0
5 TraesCS5B01G007700 chr4B 94.352 1505 82 3 1 1505 612999325 613000826 0.000000e+00 2305.0
6 TraesCS5B01G007700 chr7B 94.824 1507 78 0 1 1507 609890969 609892475 0.000000e+00 2351.0
7 TraesCS5B01G007700 chr7B 88.697 1504 157 9 1 1502 35634575 35633083 0.000000e+00 1823.0
8 TraesCS5B01G007700 chr3D 93.245 1510 87 6 1 1509 560263495 560264990 0.000000e+00 2209.0
9 TraesCS5B01G007700 chr7A 86.809 1501 189 7 1 1496 691984926 691983430 0.000000e+00 1666.0
10 TraesCS5B01G007700 chr5D 80.615 423 31 25 1888 2288 8494674 8494281 1.880000e-71 279.0
11 TraesCS5B01G007700 chr5D 90.000 70 3 3 1506 1573 8495335 8495268 1.220000e-13 87.9
12 TraesCS5B01G007700 chr5A 77.286 339 21 20 2008 2342 6715102 6714816 5.520000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G007700 chr5B 8877194 8879670 2476 True 4575 4575 100.000 1 2477 1 chr5B.!!$R1 2476
1 TraesCS5B01G007700 chr2B 382562653 382564153 1500 True 2431 2431 95.875 1 1503 1 chr2B.!!$R1 1502
2 TraesCS5B01G007700 chr2B 593650603 593651910 1307 True 2063 2063 95.126 197 1507 1 chr2B.!!$R2 1310
3 TraesCS5B01G007700 chr3B 456318118 456319620 1502 True 2423 2423 95.748 1 1505 1 chr3B.!!$R1 1504
4 TraesCS5B01G007700 chr4B 232153487 232154988 1501 False 2412 2412 95.618 1 1506 1 chr4B.!!$F1 1505
5 TraesCS5B01G007700 chr4B 612999325 613000826 1501 False 2305 2305 94.352 1 1505 1 chr4B.!!$F2 1504
6 TraesCS5B01G007700 chr7B 609890969 609892475 1506 False 2351 2351 94.824 1 1507 1 chr7B.!!$F1 1506
7 TraesCS5B01G007700 chr7B 35633083 35634575 1492 True 1823 1823 88.697 1 1502 1 chr7B.!!$R1 1501
8 TraesCS5B01G007700 chr3D 560263495 560264990 1495 False 2209 2209 93.245 1 1509 1 chr3D.!!$F1 1508
9 TraesCS5B01G007700 chr7A 691983430 691984926 1496 True 1666 1666 86.809 1 1496 1 chr7A.!!$R1 1495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
537 539 3.149005 TCTTGTCCGGCAAAGGTAAAT 57.851 42.857 13.91 0.0 36.53 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 1552 0.033504 GAAGAACAGTGGCCGTCTGA 59.966 55.0 27.09 0.0 36.81 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 6.039717 TCAAAGCATTATGGCAGGAGTTAATC 59.960 38.462 0.00 0.00 35.83 1.75
537 539 3.149005 TCTTGTCCGGCAAAGGTAAAT 57.851 42.857 13.91 0.00 36.53 1.40
538 540 3.492337 TCTTGTCCGGCAAAGGTAAATT 58.508 40.909 13.91 0.00 36.53 1.82
725 728 9.778741 GTTAGGATTGTATGAGGTCATCAATAA 57.221 33.333 13.20 6.36 42.53 1.40
859 862 5.772393 AACAACTTGGTATCTATGGTGGA 57.228 39.130 0.00 0.00 0.00 4.02
958 961 3.671008 ACTACGTTAATGCACACTCCA 57.329 42.857 0.00 0.00 0.00 3.86
963 966 4.382291 ACGTTAATGCACACTCCACTAAA 58.618 39.130 0.00 0.00 0.00 1.85
964 967 4.817464 ACGTTAATGCACACTCCACTAAAA 59.183 37.500 0.00 0.00 0.00 1.52
990 993 4.168088 ACCAGTAAAATAAGGGGATGGAGG 59.832 45.833 0.00 0.00 0.00 4.30
1031 1034 8.715191 TTTGTGAAACTAAATGTTGATGCTTT 57.285 26.923 0.00 0.00 39.13 3.51
1056 1059 5.661056 TTGATCACGATCTGTTTAGGAGT 57.339 39.130 8.43 0.00 38.60 3.85
1095 1098 5.310409 TCAGAGATGACAAAGGAAGGTTT 57.690 39.130 0.00 0.00 0.00 3.27
1143 1146 6.836953 TGATTGGTGTGTTGATGTATTAACG 58.163 36.000 0.00 0.00 0.00 3.18
1145 1148 4.643463 TGGTGTGTTGATGTATTAACGGT 58.357 39.130 0.00 0.00 0.00 4.83
1156 1159 7.774134 TGATGTATTAACGGTAGAAGCACTAA 58.226 34.615 0.00 0.00 32.49 2.24
1159 1163 8.279970 TGTATTAACGGTAGAAGCACTAACTA 57.720 34.615 4.88 0.00 36.71 2.24
1418 1430 0.912486 ACTAGGGATTGGTGTGAGGC 59.088 55.000 0.00 0.00 0.00 4.70
1519 1531 3.871775 AAAAAGGTGTGCATGCGAG 57.128 47.368 14.09 0.00 0.00 5.03
1520 1532 0.314935 AAAAAGGTGTGCATGCGAGG 59.685 50.000 14.09 0.00 0.00 4.63
1521 1533 0.823356 AAAAGGTGTGCATGCGAGGT 60.823 50.000 14.09 0.00 0.00 3.85
1522 1534 0.823356 AAAGGTGTGCATGCGAGGTT 60.823 50.000 14.09 0.00 0.00 3.50
1523 1535 0.036164 AAGGTGTGCATGCGAGGTTA 59.964 50.000 14.09 0.00 0.00 2.85
1524 1536 0.391661 AGGTGTGCATGCGAGGTTAG 60.392 55.000 14.09 0.00 0.00 2.34
1525 1537 1.369091 GGTGTGCATGCGAGGTTAGG 61.369 60.000 14.09 0.00 0.00 2.69
1526 1538 0.673644 GTGTGCATGCGAGGTTAGGT 60.674 55.000 14.09 0.00 0.00 3.08
1527 1539 0.036164 TGTGCATGCGAGGTTAGGTT 59.964 50.000 14.09 0.00 0.00 3.50
1528 1540 1.276705 TGTGCATGCGAGGTTAGGTTA 59.723 47.619 14.09 0.00 0.00 2.85
1529 1541 1.933853 GTGCATGCGAGGTTAGGTTAG 59.066 52.381 14.09 0.00 0.00 2.34
1530 1542 1.134521 TGCATGCGAGGTTAGGTTAGG 60.135 52.381 14.09 0.00 0.00 2.69
1531 1543 1.138266 GCATGCGAGGTTAGGTTAGGA 59.862 52.381 0.00 0.00 0.00 2.94
1532 1544 2.803492 GCATGCGAGGTTAGGTTAGGAG 60.803 54.545 0.00 0.00 0.00 3.69
1533 1545 1.481871 TGCGAGGTTAGGTTAGGAGG 58.518 55.000 0.00 0.00 0.00 4.30
1534 1546 1.006281 TGCGAGGTTAGGTTAGGAGGA 59.994 52.381 0.00 0.00 0.00 3.71
1535 1547 1.682323 GCGAGGTTAGGTTAGGAGGAG 59.318 57.143 0.00 0.00 0.00 3.69
1536 1548 1.682323 CGAGGTTAGGTTAGGAGGAGC 59.318 57.143 0.00 0.00 0.00 4.70
1537 1549 2.748388 GAGGTTAGGTTAGGAGGAGCA 58.252 52.381 0.00 0.00 0.00 4.26
1538 1550 2.696187 GAGGTTAGGTTAGGAGGAGCAG 59.304 54.545 0.00 0.00 0.00 4.24
1539 1551 2.315155 AGGTTAGGTTAGGAGGAGCAGA 59.685 50.000 0.00 0.00 0.00 4.26
1540 1552 3.051727 AGGTTAGGTTAGGAGGAGCAGAT 60.052 47.826 0.00 0.00 0.00 2.90
1541 1553 3.322541 GGTTAGGTTAGGAGGAGCAGATC 59.677 52.174 0.00 0.00 0.00 2.75
1542 1554 2.856760 AGGTTAGGAGGAGCAGATCA 57.143 50.000 0.00 0.00 0.00 2.92
1543 1555 2.676748 AGGTTAGGAGGAGCAGATCAG 58.323 52.381 0.00 0.00 0.00 2.90
1544 1556 2.246067 AGGTTAGGAGGAGCAGATCAGA 59.754 50.000 0.00 0.00 0.00 3.27
1545 1557 2.364002 GGTTAGGAGGAGCAGATCAGAC 59.636 54.545 0.00 0.00 0.00 3.51
1546 1558 1.974265 TAGGAGGAGCAGATCAGACG 58.026 55.000 0.00 0.00 0.00 4.18
1547 1559 0.754957 AGGAGGAGCAGATCAGACGG 60.755 60.000 0.00 0.00 0.00 4.79
1548 1560 1.067250 GAGGAGCAGATCAGACGGC 59.933 63.158 0.00 0.00 0.00 5.68
1549 1561 2.107953 GGAGCAGATCAGACGGCC 59.892 66.667 0.00 0.00 0.00 6.13
1550 1562 2.725312 GGAGCAGATCAGACGGCCA 61.725 63.158 2.24 0.00 0.00 5.36
1551 1563 1.520342 GAGCAGATCAGACGGCCAC 60.520 63.158 2.24 0.00 0.00 5.01
1552 1564 1.954362 GAGCAGATCAGACGGCCACT 61.954 60.000 2.24 0.00 0.00 4.00
1553 1565 1.812922 GCAGATCAGACGGCCACTG 60.813 63.158 17.59 17.59 36.80 3.66
1554 1566 1.593787 CAGATCAGACGGCCACTGT 59.406 57.895 21.21 12.04 36.81 3.55
1555 1567 0.036952 CAGATCAGACGGCCACTGTT 60.037 55.000 21.21 15.47 36.81 3.16
1556 1568 0.247736 AGATCAGACGGCCACTGTTC 59.752 55.000 21.21 21.05 36.81 3.18
1557 1569 0.247736 GATCAGACGGCCACTGTTCT 59.752 55.000 21.21 11.04 36.81 3.01
1558 1570 0.687354 ATCAGACGGCCACTGTTCTT 59.313 50.000 21.21 7.38 36.81 2.52
1559 1571 0.033504 TCAGACGGCCACTGTTCTTC 59.966 55.000 21.21 0.00 36.81 2.87
1560 1572 0.034059 CAGACGGCCACTGTTCTTCT 59.966 55.000 16.02 0.00 0.00 2.85
1561 1573 0.034059 AGACGGCCACTGTTCTTCTG 59.966 55.000 2.24 0.00 0.00 3.02
1562 1574 0.249911 GACGGCCACTGTTCTTCTGT 60.250 55.000 2.24 0.00 0.00 3.41
1563 1575 0.532862 ACGGCCACTGTTCTTCTGTG 60.533 55.000 2.24 0.00 42.84 3.66
1564 1576 0.532862 CGGCCACTGTTCTTCTGTGT 60.533 55.000 2.24 0.00 42.05 3.72
1565 1577 1.270094 CGGCCACTGTTCTTCTGTGTA 60.270 52.381 2.24 0.00 42.05 2.90
1566 1578 2.143925 GGCCACTGTTCTTCTGTGTAC 58.856 52.381 0.00 0.00 42.05 2.90
1567 1579 2.224305 GGCCACTGTTCTTCTGTGTACT 60.224 50.000 0.00 0.00 42.05 2.73
1568 1580 2.802816 GCCACTGTTCTTCTGTGTACTG 59.197 50.000 0.00 0.00 42.05 2.74
1569 1581 3.741388 GCCACTGTTCTTCTGTGTACTGT 60.741 47.826 0.00 0.00 42.05 3.55
1570 1582 4.500887 GCCACTGTTCTTCTGTGTACTGTA 60.501 45.833 0.00 0.00 42.05 2.74
1571 1583 4.982916 CCACTGTTCTTCTGTGTACTGTAC 59.017 45.833 10.98 10.98 42.05 2.90
1572 1584 5.221263 CCACTGTTCTTCTGTGTACTGTACT 60.221 44.000 17.98 0.00 42.05 2.73
1573 1585 5.687730 CACTGTTCTTCTGTGTACTGTACTG 59.312 44.000 17.98 9.04 39.86 2.74
1574 1586 5.360144 ACTGTTCTTCTGTGTACTGTACTGT 59.640 40.000 17.98 10.46 0.00 3.55
1575 1587 5.828747 TGTTCTTCTGTGTACTGTACTGTC 58.171 41.667 17.98 9.60 0.00 3.51
1576 1588 5.221130 GTTCTTCTGTGTACTGTACTGTCC 58.779 45.833 17.98 0.00 0.00 4.02
1577 1589 3.501062 TCTTCTGTGTACTGTACTGTCCG 59.499 47.826 17.98 6.52 0.00 4.79
1578 1590 2.854963 TCTGTGTACTGTACTGTCCGT 58.145 47.619 17.98 0.00 0.00 4.69
1579 1591 2.551032 TCTGTGTACTGTACTGTCCGTG 59.449 50.000 17.98 3.36 0.00 4.94
1580 1592 1.610038 TGTGTACTGTACTGTCCGTGG 59.390 52.381 17.98 0.00 0.00 4.94
1581 1593 0.599558 TGTACTGTACTGTCCGTGGC 59.400 55.000 17.98 0.00 0.00 5.01
1582 1594 0.599558 GTACTGTACTGTCCGTGGCA 59.400 55.000 8.85 0.00 0.00 4.92
1583 1595 0.599558 TACTGTACTGTCCGTGGCAC 59.400 55.000 7.79 7.79 0.00 5.01
1584 1596 1.733041 CTGTACTGTCCGTGGCACG 60.733 63.158 31.78 31.78 42.11 5.34
1585 1597 2.337532 GTACTGTCCGTGGCACGT 59.662 61.111 34.74 20.54 40.58 4.49
1586 1598 1.171549 TGTACTGTCCGTGGCACGTA 61.172 55.000 34.74 20.73 40.58 3.57
1587 1599 0.455633 GTACTGTCCGTGGCACGTAG 60.456 60.000 34.74 29.02 40.58 3.51
1588 1600 2.203972 TACTGTCCGTGGCACGTAGC 62.204 60.000 34.74 24.21 40.58 3.58
1593 1605 3.245315 CGTGGCACGTAGCGTAGC 61.245 66.667 30.56 1.29 46.66 3.58
1606 1618 2.070861 CGTAGCTCTGTTTCCACGC 58.929 57.895 0.00 0.00 0.00 5.34
1607 1619 0.666274 CGTAGCTCTGTTTCCACGCA 60.666 55.000 0.00 0.00 0.00 5.24
1608 1620 1.071605 GTAGCTCTGTTTCCACGCAG 58.928 55.000 0.00 0.00 0.00 5.18
1609 1621 0.966179 TAGCTCTGTTTCCACGCAGA 59.034 50.000 0.00 0.00 39.17 4.26
1610 1622 0.106708 AGCTCTGTTTCCACGCAGAA 59.893 50.000 0.00 0.00 40.68 3.02
1611 1623 0.235926 GCTCTGTTTCCACGCAGAAC 59.764 55.000 0.00 0.00 40.68 3.01
1612 1624 1.581934 CTCTGTTTCCACGCAGAACA 58.418 50.000 0.00 0.00 40.68 3.18
1613 1625 1.261619 CTCTGTTTCCACGCAGAACAC 59.738 52.381 0.00 0.00 40.68 3.32
1614 1626 1.013596 CTGTTTCCACGCAGAACACA 58.986 50.000 0.00 0.00 34.87 3.72
1615 1627 1.603802 CTGTTTCCACGCAGAACACAT 59.396 47.619 0.00 0.00 34.87 3.21
1616 1628 2.020720 TGTTTCCACGCAGAACACATT 58.979 42.857 0.00 0.00 0.00 2.71
1617 1629 2.425312 TGTTTCCACGCAGAACACATTT 59.575 40.909 0.00 0.00 0.00 2.32
1618 1630 3.042887 GTTTCCACGCAGAACACATTTC 58.957 45.455 0.00 0.00 0.00 2.17
1619 1631 0.865111 TCCACGCAGAACACATTTCG 59.135 50.000 0.00 0.00 0.00 3.46
1620 1632 0.865111 CCACGCAGAACACATTTCGA 59.135 50.000 0.00 0.00 0.00 3.71
1621 1633 1.136252 CCACGCAGAACACATTTCGAG 60.136 52.381 0.00 0.00 0.00 4.04
1622 1634 0.512952 ACGCAGAACACATTTCGAGC 59.487 50.000 0.00 0.00 0.00 5.03
1623 1635 0.517132 CGCAGAACACATTTCGAGCG 60.517 55.000 10.75 10.75 39.72 5.03
1624 1636 0.790866 GCAGAACACATTTCGAGCGC 60.791 55.000 0.00 0.00 0.00 5.92
1625 1637 0.512518 CAGAACACATTTCGAGCGCA 59.487 50.000 11.47 0.00 0.00 6.09
1626 1638 0.512952 AGAACACATTTCGAGCGCAC 59.487 50.000 11.47 0.96 0.00 5.34
1627 1639 0.234625 GAACACATTTCGAGCGCACA 59.765 50.000 11.47 0.00 0.00 4.57
1628 1640 0.041312 AACACATTTCGAGCGCACAC 60.041 50.000 11.47 0.00 0.00 3.82
1629 1641 1.507713 CACATTTCGAGCGCACACG 60.508 57.895 11.47 12.84 44.07 4.49
1647 1659 3.376078 CATGCTTGCCGCCTGGTT 61.376 61.111 0.00 0.00 38.05 3.67
1648 1660 2.601367 ATGCTTGCCGCCTGGTTT 60.601 55.556 0.00 0.00 38.05 3.27
1649 1661 2.209315 ATGCTTGCCGCCTGGTTTT 61.209 52.632 0.00 0.00 38.05 2.43
1650 1662 1.757423 ATGCTTGCCGCCTGGTTTTT 61.757 50.000 0.00 0.00 38.05 1.94
1651 1663 1.664649 GCTTGCCGCCTGGTTTTTC 60.665 57.895 0.00 0.00 37.67 2.29
1652 1664 2.041153 CTTGCCGCCTGGTTTTTCT 58.959 52.632 0.00 0.00 37.67 2.52
1653 1665 0.039165 CTTGCCGCCTGGTTTTTCTC 60.039 55.000 0.00 0.00 37.67 2.87
1654 1666 0.467290 TTGCCGCCTGGTTTTTCTCT 60.467 50.000 0.00 0.00 37.67 3.10
1655 1667 0.398696 TGCCGCCTGGTTTTTCTCTA 59.601 50.000 0.00 0.00 37.67 2.43
1656 1668 0.803117 GCCGCCTGGTTTTTCTCTAC 59.197 55.000 0.00 0.00 37.67 2.59
1657 1669 1.880646 GCCGCCTGGTTTTTCTCTACA 60.881 52.381 0.00 0.00 37.67 2.74
1658 1670 2.076863 CCGCCTGGTTTTTCTCTACAG 58.923 52.381 0.00 0.00 0.00 2.74
1667 1679 6.837312 TGGTTTTTCTCTACAGGAATTCTGA 58.163 36.000 5.23 0.00 46.18 3.27
1668 1680 7.461749 TGGTTTTTCTCTACAGGAATTCTGAT 58.538 34.615 5.23 0.00 46.18 2.90
1669 1681 7.944554 TGGTTTTTCTCTACAGGAATTCTGATT 59.055 33.333 5.23 0.00 46.18 2.57
1670 1682 9.449719 GGTTTTTCTCTACAGGAATTCTGATTA 57.550 33.333 5.23 0.00 46.18 1.75
1675 1687 9.823647 TTCTCTACAGGAATTCTGATTATTCAC 57.176 33.333 5.23 0.00 46.18 3.18
1676 1688 8.424918 TCTCTACAGGAATTCTGATTATTCACC 58.575 37.037 5.23 0.00 46.18 4.02
1677 1689 8.324191 TCTACAGGAATTCTGATTATTCACCT 57.676 34.615 5.23 0.00 46.18 4.00
1678 1690 8.772250 TCTACAGGAATTCTGATTATTCACCTT 58.228 33.333 5.23 0.00 46.18 3.50
1679 1691 9.401058 CTACAGGAATTCTGATTATTCACCTTT 57.599 33.333 5.23 0.00 46.18 3.11
1680 1692 8.655935 ACAGGAATTCTGATTATTCACCTTTT 57.344 30.769 5.23 0.00 46.18 2.27
1681 1693 9.093458 ACAGGAATTCTGATTATTCACCTTTTT 57.907 29.630 5.23 0.00 46.18 1.94
1697 1709 2.990066 TTTTTGCGTGGGGTTTTGAT 57.010 40.000 0.00 0.00 0.00 2.57
1698 1710 2.231215 TTTTGCGTGGGGTTTTGATG 57.769 45.000 0.00 0.00 0.00 3.07
1699 1711 1.403814 TTTGCGTGGGGTTTTGATGA 58.596 45.000 0.00 0.00 0.00 2.92
1700 1712 1.626686 TTGCGTGGGGTTTTGATGAT 58.373 45.000 0.00 0.00 0.00 2.45
1701 1713 1.173043 TGCGTGGGGTTTTGATGATC 58.827 50.000 0.00 0.00 0.00 2.92
1702 1714 1.271871 TGCGTGGGGTTTTGATGATCT 60.272 47.619 0.00 0.00 0.00 2.75
1703 1715 1.401905 GCGTGGGGTTTTGATGATCTC 59.598 52.381 0.00 0.00 0.00 2.75
1704 1716 2.941415 GCGTGGGGTTTTGATGATCTCT 60.941 50.000 0.00 0.00 0.00 3.10
1705 1717 2.939103 CGTGGGGTTTTGATGATCTCTC 59.061 50.000 0.00 0.00 0.00 3.20
1706 1718 3.619733 CGTGGGGTTTTGATGATCTCTCA 60.620 47.826 0.00 0.00 35.41 3.27
1707 1719 3.691609 GTGGGGTTTTGATGATCTCTCAC 59.308 47.826 0.00 0.00 33.22 3.51
1708 1720 2.939103 GGGGTTTTGATGATCTCTCACG 59.061 50.000 0.00 0.00 33.22 4.35
1709 1721 3.600388 GGGTTTTGATGATCTCTCACGT 58.400 45.455 0.00 0.00 33.22 4.49
1710 1722 4.003648 GGGTTTTGATGATCTCTCACGTT 58.996 43.478 0.00 0.00 33.22 3.99
1711 1723 4.455877 GGGTTTTGATGATCTCTCACGTTT 59.544 41.667 0.00 0.00 33.22 3.60
1712 1724 5.048713 GGGTTTTGATGATCTCTCACGTTTT 60.049 40.000 0.00 0.00 33.22 2.43
1713 1725 6.438763 GGTTTTGATGATCTCTCACGTTTTT 58.561 36.000 0.00 0.00 33.22 1.94
1737 1749 9.874205 TTTTCAGACAATTTTTGATTTCTCACT 57.126 25.926 0.00 0.00 0.00 3.41
1738 1750 9.874205 TTTCAGACAATTTTTGATTTCTCACTT 57.126 25.926 0.00 0.00 0.00 3.16
1739 1751 9.874205 TTCAGACAATTTTTGATTTCTCACTTT 57.126 25.926 0.00 0.00 0.00 2.66
1740 1752 9.874205 TCAGACAATTTTTGATTTCTCACTTTT 57.126 25.926 0.00 0.00 0.00 2.27
1762 1774 3.975479 TTTTAGGGGTGTTTTGAGGGA 57.025 42.857 0.00 0.00 0.00 4.20
1763 1775 4.479156 TTTTAGGGGTGTTTTGAGGGAT 57.521 40.909 0.00 0.00 0.00 3.85
1764 1776 3.449746 TTAGGGGTGTTTTGAGGGATG 57.550 47.619 0.00 0.00 0.00 3.51
1765 1777 1.455822 AGGGGTGTTTTGAGGGATGA 58.544 50.000 0.00 0.00 0.00 2.92
1766 1778 2.003072 AGGGGTGTTTTGAGGGATGAT 58.997 47.619 0.00 0.00 0.00 2.45
1767 1779 2.383338 AGGGGTGTTTTGAGGGATGATT 59.617 45.455 0.00 0.00 0.00 2.57
1768 1780 3.173151 GGGGTGTTTTGAGGGATGATTT 58.827 45.455 0.00 0.00 0.00 2.17
1769 1781 3.195610 GGGGTGTTTTGAGGGATGATTTC 59.804 47.826 0.00 0.00 0.00 2.17
1770 1782 4.089361 GGGTGTTTTGAGGGATGATTTCT 58.911 43.478 0.00 0.00 0.00 2.52
1771 1783 4.158579 GGGTGTTTTGAGGGATGATTTCTC 59.841 45.833 0.00 0.00 0.00 2.87
1772 1784 4.766891 GGTGTTTTGAGGGATGATTTCTCA 59.233 41.667 0.00 0.00 35.95 3.27
1773 1785 5.335976 GGTGTTTTGAGGGATGATTTCTCAC 60.336 44.000 0.00 0.00 37.28 3.51
1774 1786 4.455533 TGTTTTGAGGGATGATTTCTCACG 59.544 41.667 0.00 0.00 37.28 4.35
1775 1787 3.981071 TTGAGGGATGATTTCTCACGT 57.019 42.857 0.00 0.00 37.28 4.49
1776 1788 3.251479 TGAGGGATGATTTCTCACGTG 57.749 47.619 9.94 9.94 33.22 4.49
1777 1789 2.093500 TGAGGGATGATTTCTCACGTGG 60.093 50.000 17.00 6.71 33.22 4.94
1778 1790 1.017387 GGGATGATTTCTCACGTGGC 58.983 55.000 17.00 0.00 33.22 5.01
1779 1791 1.017387 GGATGATTTCTCACGTGGCC 58.983 55.000 17.00 0.00 33.22 5.36
1780 1792 0.652592 GATGATTTCTCACGTGGCCG 59.347 55.000 17.00 4.90 40.83 6.13
1781 1793 0.744414 ATGATTTCTCACGTGGCCGG 60.744 55.000 17.00 0.00 38.78 6.13
1782 1794 1.375523 GATTTCTCACGTGGCCGGT 60.376 57.895 17.00 0.00 38.78 5.28
1783 1795 0.953960 GATTTCTCACGTGGCCGGTT 60.954 55.000 17.00 0.00 38.78 4.44
1784 1796 1.234615 ATTTCTCACGTGGCCGGTTG 61.235 55.000 17.00 0.00 38.78 3.77
1785 1797 4.980805 TCTCACGTGGCCGGTTGC 62.981 66.667 17.00 0.00 38.78 4.17
1786 1798 4.988598 CTCACGTGGCCGGTTGCT 62.989 66.667 17.00 0.00 40.92 3.91
1787 1799 4.980805 TCACGTGGCCGGTTGCTC 62.981 66.667 17.00 0.00 40.92 4.26
1791 1803 3.723348 GTGGCCGGTTGCTCGTTC 61.723 66.667 1.90 0.00 40.92 3.95
1796 1808 4.117372 CGGTTGCTCGTTCGCGTC 62.117 66.667 5.77 0.00 42.11 5.19
1797 1809 4.117372 GGTTGCTCGTTCGCGTCG 62.117 66.667 5.77 12.96 42.11 5.12
1798 1810 3.392440 GTTGCTCGTTCGCGTCGT 61.392 61.111 20.51 0.00 42.11 4.34
1799 1811 3.095278 TTGCTCGTTCGCGTCGTC 61.095 61.111 20.51 15.39 42.11 4.20
1827 1839 4.176752 GGCCTAGGAAGCCCACCG 62.177 72.222 14.75 0.00 45.16 4.94
1828 1840 3.400054 GCCTAGGAAGCCCACCGT 61.400 66.667 14.75 0.00 33.88 4.83
1829 1841 2.901042 CCTAGGAAGCCCACCGTC 59.099 66.667 1.05 0.00 33.88 4.79
1830 1842 2.494918 CTAGGAAGCCCACCGTCG 59.505 66.667 0.00 0.00 33.88 5.12
1831 1843 3.718210 CTAGGAAGCCCACCGTCGC 62.718 68.421 0.00 0.00 33.88 5.19
1834 1846 3.423154 GAAGCCCACCGTCGCTTG 61.423 66.667 7.03 0.00 45.14 4.01
1835 1847 4.250305 AAGCCCACCGTCGCTTGT 62.250 61.111 2.24 0.00 43.54 3.16
1836 1848 3.767630 AAGCCCACCGTCGCTTGTT 62.768 57.895 2.24 0.00 43.54 2.83
1837 1849 3.284449 GCCCACCGTCGCTTGTTT 61.284 61.111 0.00 0.00 0.00 2.83
1838 1850 2.841160 GCCCACCGTCGCTTGTTTT 61.841 57.895 0.00 0.00 0.00 2.43
1839 1851 1.731093 CCCACCGTCGCTTGTTTTT 59.269 52.632 0.00 0.00 0.00 1.94
1855 1867 2.211353 TTTTTGTTGTTGTAGGCCGC 57.789 45.000 0.00 0.00 0.00 6.53
1856 1868 0.386113 TTTTGTTGTTGTAGGCCGCC 59.614 50.000 0.00 0.00 0.00 6.13
1857 1869 0.752009 TTTGTTGTTGTAGGCCGCCA 60.752 50.000 13.15 0.00 0.00 5.69
1858 1870 1.169661 TTGTTGTTGTAGGCCGCCAG 61.170 55.000 13.15 0.00 0.00 4.85
1859 1871 2.033448 TTGTTGTAGGCCGCCAGG 59.967 61.111 13.15 0.00 41.62 4.45
1876 1888 2.887568 GCCGATGCCTGTCGACTG 60.888 66.667 17.92 16.32 44.06 3.51
1877 1889 2.202797 CCGATGCCTGTCGACTGG 60.203 66.667 31.00 31.00 44.06 4.00
1878 1890 2.202797 CGATGCCTGTCGACTGGG 60.203 66.667 34.10 26.48 44.06 4.45
1879 1891 2.512515 GATGCCTGTCGACTGGGC 60.513 66.667 34.10 32.68 45.45 5.36
1880 1892 4.101448 ATGCCTGTCGACTGGGCC 62.101 66.667 34.10 22.48 44.71 5.80
1883 1895 4.436998 CCTGTCGACTGGGCCGTC 62.437 72.222 28.59 15.55 0.00 4.79
1884 1896 4.436998 CTGTCGACTGGGCCGTCC 62.437 72.222 17.92 9.29 0.00 4.79
1898 1910 4.503314 GTCCCGGGTCGCCGTTAG 62.503 72.222 22.86 0.00 0.00 2.34
1902 1914 4.430765 CGGGTCGCCGTTAGCAGT 62.431 66.667 0.00 0.00 44.04 4.40
1903 1915 2.887360 GGGTCGCCGTTAGCAGTA 59.113 61.111 0.00 0.00 44.04 2.74
1904 1916 1.216178 GGGTCGCCGTTAGCAGTAA 59.784 57.895 0.00 0.00 44.04 2.24
1905 1917 0.179092 GGGTCGCCGTTAGCAGTAAT 60.179 55.000 0.00 0.00 44.04 1.89
1906 1918 1.648504 GGTCGCCGTTAGCAGTAATT 58.351 50.000 0.00 0.00 44.04 1.40
1907 1919 2.481795 GGGTCGCCGTTAGCAGTAATTA 60.482 50.000 0.00 0.00 44.04 1.40
1908 1920 3.189285 GGTCGCCGTTAGCAGTAATTAA 58.811 45.455 0.00 0.00 44.04 1.40
1909 1921 3.000623 GGTCGCCGTTAGCAGTAATTAAC 59.999 47.826 0.00 0.00 44.04 2.01
1910 1922 3.861689 GTCGCCGTTAGCAGTAATTAACT 59.138 43.478 0.00 0.00 44.04 2.24
1911 1923 4.027050 GTCGCCGTTAGCAGTAATTAACTC 60.027 45.833 0.00 0.00 44.04 3.01
1912 1924 3.061403 CGCCGTTAGCAGTAATTAACTCG 60.061 47.826 0.00 0.00 44.04 4.18
1913 1925 3.244579 GCCGTTAGCAGTAATTAACTCGG 59.755 47.826 0.00 0.00 41.30 4.63
1914 1926 3.244579 CCGTTAGCAGTAATTAACTCGGC 59.755 47.826 0.00 0.00 34.86 5.54
1915 1927 4.110482 CGTTAGCAGTAATTAACTCGGCT 58.890 43.478 4.97 4.97 39.87 5.52
1916 1928 4.565564 CGTTAGCAGTAATTAACTCGGCTT 59.434 41.667 4.92 0.00 38.20 4.35
1917 1929 5.063060 CGTTAGCAGTAATTAACTCGGCTTT 59.937 40.000 4.92 0.00 38.20 3.51
1918 1930 4.946784 AGCAGTAATTAACTCGGCTTTG 57.053 40.909 0.00 0.00 34.65 2.77
1919 1931 4.575885 AGCAGTAATTAACTCGGCTTTGA 58.424 39.130 0.00 0.00 34.65 2.69
1920 1932 4.392138 AGCAGTAATTAACTCGGCTTTGAC 59.608 41.667 0.00 0.00 34.65 3.18
1921 1933 4.436986 GCAGTAATTAACTCGGCTTTGACC 60.437 45.833 0.00 0.00 35.76 4.02
1922 1934 4.693566 CAGTAATTAACTCGGCTTTGACCA 59.306 41.667 0.00 0.00 35.76 4.02
1923 1935 5.180492 CAGTAATTAACTCGGCTTTGACCAA 59.820 40.000 0.00 0.00 35.76 3.67
1924 1936 5.766174 AGTAATTAACTCGGCTTTGACCAAA 59.234 36.000 0.00 0.00 30.33 3.28
1925 1937 6.072673 AGTAATTAACTCGGCTTTGACCAAAG 60.073 38.462 15.95 15.95 41.69 2.77
1926 1938 8.387599 AGTAATTAACTCGGCTTTGACCAAAGT 61.388 37.037 19.81 5.62 41.22 2.66
1943 1955 8.675040 GACCAAAGTCAGAAGCAATTAATAAC 57.325 34.615 0.00 0.00 42.99 1.89
1944 1956 8.409358 ACCAAAGTCAGAAGCAATTAATAACT 57.591 30.769 0.00 0.00 0.00 2.24
1945 1957 8.515414 ACCAAAGTCAGAAGCAATTAATAACTC 58.485 33.333 0.00 0.00 0.00 3.01
1946 1958 7.693951 CCAAAGTCAGAAGCAATTAATAACTCG 59.306 37.037 0.00 0.00 0.00 4.18
1947 1959 6.351327 AGTCAGAAGCAATTAATAACTCGC 57.649 37.500 0.00 0.00 0.00 5.03
1948 1960 5.874810 AGTCAGAAGCAATTAATAACTCGCA 59.125 36.000 0.00 0.00 0.00 5.10
1949 1961 6.540189 AGTCAGAAGCAATTAATAACTCGCAT 59.460 34.615 0.00 0.00 0.00 4.73
1950 1962 6.848296 GTCAGAAGCAATTAATAACTCGCATC 59.152 38.462 0.00 0.00 0.00 3.91
1951 1963 6.017934 TCAGAAGCAATTAATAACTCGCATCC 60.018 38.462 0.00 0.00 0.00 3.51
1952 1964 5.822519 AGAAGCAATTAATAACTCGCATCCA 59.177 36.000 0.00 0.00 0.00 3.41
1953 1965 5.679734 AGCAATTAATAACTCGCATCCAG 57.320 39.130 0.00 0.00 0.00 3.86
1954 1966 4.023707 AGCAATTAATAACTCGCATCCAGC 60.024 41.667 0.00 0.00 40.87 4.85
1965 1977 2.634982 GCATCCAGCGAGATAGAGAG 57.365 55.000 0.00 0.00 0.00 3.20
1966 1978 2.158559 GCATCCAGCGAGATAGAGAGA 58.841 52.381 0.00 0.00 0.00 3.10
1967 1979 2.162208 GCATCCAGCGAGATAGAGAGAG 59.838 54.545 0.00 0.00 0.00 3.20
1968 1980 2.559698 TCCAGCGAGATAGAGAGAGG 57.440 55.000 0.00 0.00 0.00 3.69
1969 1981 1.073125 TCCAGCGAGATAGAGAGAGGG 59.927 57.143 0.00 0.00 0.00 4.30
1970 1982 1.073125 CCAGCGAGATAGAGAGAGGGA 59.927 57.143 0.00 0.00 0.00 4.20
1971 1983 2.426522 CAGCGAGATAGAGAGAGGGAG 58.573 57.143 0.00 0.00 0.00 4.30
1972 1984 2.038426 CAGCGAGATAGAGAGAGGGAGA 59.962 54.545 0.00 0.00 0.00 3.71
1973 1985 2.303022 AGCGAGATAGAGAGAGGGAGAG 59.697 54.545 0.00 0.00 0.00 3.20
1974 1986 2.301870 GCGAGATAGAGAGAGGGAGAGA 59.698 54.545 0.00 0.00 0.00 3.10
1975 1987 3.617531 GCGAGATAGAGAGAGGGAGAGAG 60.618 56.522 0.00 0.00 0.00 3.20
1976 1988 3.832490 CGAGATAGAGAGAGGGAGAGAGA 59.168 52.174 0.00 0.00 0.00 3.10
1977 1989 4.081972 CGAGATAGAGAGAGGGAGAGAGAG 60.082 54.167 0.00 0.00 0.00 3.20
1978 1990 4.832492 AGATAGAGAGAGGGAGAGAGAGT 58.168 47.826 0.00 0.00 0.00 3.24
1979 1991 4.841246 AGATAGAGAGAGGGAGAGAGAGTC 59.159 50.000 0.00 0.00 0.00 3.36
1980 1992 1.762957 AGAGAGAGGGAGAGAGAGTCG 59.237 57.143 0.00 0.00 0.00 4.18
1981 1993 0.180406 AGAGAGGGAGAGAGAGTCGC 59.820 60.000 0.00 0.00 0.00 5.19
1982 1994 0.818040 GAGAGGGAGAGAGAGTCGCC 60.818 65.000 0.00 0.00 44.31 5.54
1983 1995 1.226262 GAGGGAGAGAGAGTCGCCT 59.774 63.158 0.00 0.00 44.44 5.52
1984 1996 0.470766 GAGGGAGAGAGAGTCGCCTA 59.529 60.000 0.00 0.00 44.44 3.93
1985 1997 1.073284 GAGGGAGAGAGAGTCGCCTAT 59.927 57.143 0.00 0.00 44.44 2.57
1986 1998 1.497286 AGGGAGAGAGAGTCGCCTATT 59.503 52.381 0.00 0.00 44.44 1.73
1987 1999 1.883926 GGGAGAGAGAGTCGCCTATTC 59.116 57.143 0.00 0.00 44.44 1.75
1988 2000 2.577700 GGAGAGAGAGTCGCCTATTCA 58.422 52.381 0.00 0.00 41.83 2.57
1989 2001 3.153919 GGAGAGAGAGTCGCCTATTCAT 58.846 50.000 0.00 0.00 41.83 2.57
1990 2002 4.328536 GGAGAGAGAGTCGCCTATTCATA 58.671 47.826 0.00 0.00 41.83 2.15
1991 2003 4.155280 GGAGAGAGAGTCGCCTATTCATAC 59.845 50.000 0.00 0.00 41.83 2.39
1992 2004 4.980573 AGAGAGAGTCGCCTATTCATACT 58.019 43.478 0.00 0.00 0.00 2.12
1993 2005 5.001232 AGAGAGAGTCGCCTATTCATACTC 58.999 45.833 0.00 0.00 37.44 2.59
1995 2007 6.014070 AGAGAGAGTCGCCTATTCATACTCTA 60.014 42.308 3.45 0.00 45.17 2.43
1996 2008 6.170506 AGAGAGTCGCCTATTCATACTCTAG 58.829 44.000 3.45 0.00 45.17 2.43
1997 2009 5.871834 AGAGTCGCCTATTCATACTCTAGT 58.128 41.667 0.00 0.00 43.79 2.57
1998 2010 7.006865 AGAGTCGCCTATTCATACTCTAGTA 57.993 40.000 0.00 0.00 43.79 1.82
1999 2011 6.875195 AGAGTCGCCTATTCATACTCTAGTAC 59.125 42.308 0.00 0.00 43.79 2.73
2000 2012 6.771573 AGTCGCCTATTCATACTCTAGTACT 58.228 40.000 0.00 0.00 32.72 2.73
2001 2013 7.225725 AGTCGCCTATTCATACTCTAGTACTT 58.774 38.462 0.00 0.00 32.72 2.24
2002 2014 7.173562 AGTCGCCTATTCATACTCTAGTACTTG 59.826 40.741 0.00 0.00 32.72 3.16
2003 2015 6.996879 TCGCCTATTCATACTCTAGTACTTGT 59.003 38.462 0.00 0.80 32.72 3.16
2004 2016 7.172875 TCGCCTATTCATACTCTAGTACTTGTC 59.827 40.741 0.00 0.00 32.72 3.18
2005 2017 7.041303 CGCCTATTCATACTCTAGTACTTGTCA 60.041 40.741 0.00 0.00 32.72 3.58
2006 2018 8.798402 GCCTATTCATACTCTAGTACTTGTCAT 58.202 37.037 0.00 0.00 32.72 3.06
2011 2023 9.688091 TTCATACTCTAGTACTTGTCATCTTCT 57.312 33.333 0.00 0.00 32.72 2.85
2012 2024 9.688091 TCATACTCTAGTACTTGTCATCTTCTT 57.312 33.333 0.00 0.00 32.72 2.52
2013 2025 9.944663 CATACTCTAGTACTTGTCATCTTCTTC 57.055 37.037 0.00 0.00 32.72 2.87
2014 2026 7.399245 ACTCTAGTACTTGTCATCTTCTTCC 57.601 40.000 0.00 0.00 0.00 3.46
2015 2027 6.378848 ACTCTAGTACTTGTCATCTTCTTCCC 59.621 42.308 0.00 0.00 0.00 3.97
2016 2028 4.828072 AGTACTTGTCATCTTCTTCCCC 57.172 45.455 0.00 0.00 0.00 4.81
2017 2029 2.770164 ACTTGTCATCTTCTTCCCCG 57.230 50.000 0.00 0.00 0.00 5.73
2018 2030 2.257207 ACTTGTCATCTTCTTCCCCGA 58.743 47.619 0.00 0.00 0.00 5.14
2019 2031 2.637872 ACTTGTCATCTTCTTCCCCGAA 59.362 45.455 0.00 0.00 0.00 4.30
2020 2032 3.265791 CTTGTCATCTTCTTCCCCGAAG 58.734 50.000 0.00 0.00 41.32 3.79
2021 2033 1.066143 TGTCATCTTCTTCCCCGAAGC 60.066 52.381 0.00 0.00 40.11 3.86
2022 2034 1.208293 GTCATCTTCTTCCCCGAAGCT 59.792 52.381 0.00 0.00 40.11 3.74
2023 2035 1.909302 TCATCTTCTTCCCCGAAGCTT 59.091 47.619 0.00 0.00 40.11 3.74
2024 2036 2.093447 TCATCTTCTTCCCCGAAGCTTC 60.093 50.000 16.84 16.84 40.11 3.86
2025 2037 1.645710 TCTTCTTCCCCGAAGCTTCT 58.354 50.000 23.50 0.00 40.11 2.85
2026 2038 1.550976 TCTTCTTCCCCGAAGCTTCTC 59.449 52.381 23.50 0.00 40.11 2.87
2027 2039 0.246635 TTCTTCCCCGAAGCTTCTCG 59.753 55.000 23.50 12.70 39.29 4.04
2028 2040 0.898789 TCTTCCCCGAAGCTTCTCGT 60.899 55.000 23.50 0.00 39.29 4.18
2029 2041 0.458716 CTTCCCCGAAGCTTCTCGTC 60.459 60.000 23.50 0.00 37.11 4.20
2030 2042 1.885163 TTCCCCGAAGCTTCTCGTCC 61.885 60.000 23.50 0.00 37.11 4.79
2031 2043 2.352032 CCCCGAAGCTTCTCGTCCT 61.352 63.158 23.50 0.00 37.11 3.85
2032 2044 1.139947 CCCGAAGCTTCTCGTCCTC 59.860 63.158 23.50 0.00 37.11 3.71
2033 2045 1.316706 CCCGAAGCTTCTCGTCCTCT 61.317 60.000 23.50 0.00 37.11 3.69
2034 2046 0.099791 CCGAAGCTTCTCGTCCTCTC 59.900 60.000 23.50 0.00 37.11 3.20
2035 2047 0.099791 CGAAGCTTCTCGTCCTCTCC 59.900 60.000 23.50 0.00 34.08 3.71
2036 2048 0.458260 GAAGCTTCTCGTCCTCTCCC 59.542 60.000 19.44 0.00 0.00 4.30
2037 2049 0.973496 AAGCTTCTCGTCCTCTCCCC 60.973 60.000 0.00 0.00 0.00 4.81
2038 2050 1.380650 GCTTCTCGTCCTCTCCCCT 60.381 63.158 0.00 0.00 0.00 4.79
2039 2051 1.388837 GCTTCTCGTCCTCTCCCCTC 61.389 65.000 0.00 0.00 0.00 4.30
2040 2052 0.753848 CTTCTCGTCCTCTCCCCTCC 60.754 65.000 0.00 0.00 0.00 4.30
2041 2053 2.123640 CTCGTCCTCTCCCCTCCC 60.124 72.222 0.00 0.00 0.00 4.30
2042 2054 3.742248 CTCGTCCTCTCCCCTCCCC 62.742 73.684 0.00 0.00 0.00 4.81
2043 2055 4.862823 CGTCCTCTCCCCTCCCCC 62.863 77.778 0.00 0.00 0.00 5.40
2044 2056 3.369388 GTCCTCTCCCCTCCCCCT 61.369 72.222 0.00 0.00 0.00 4.79
2045 2057 3.036959 TCCTCTCCCCTCCCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
2046 2058 4.548513 CCTCTCCCCTCCCCCTCG 62.549 77.778 0.00 0.00 0.00 4.63
2116 2128 4.832608 CCGCCGGTAAGCAGTCCC 62.833 72.222 1.90 0.00 0.00 4.46
2117 2129 4.077184 CGCCGGTAAGCAGTCCCA 62.077 66.667 1.90 0.00 0.00 4.37
2118 2130 2.436115 GCCGGTAAGCAGTCCCAC 60.436 66.667 1.90 0.00 0.00 4.61
2119 2131 2.267961 CCGGTAAGCAGTCCCACC 59.732 66.667 0.00 0.00 0.00 4.61
2120 2132 2.267961 CGGTAAGCAGTCCCACCC 59.732 66.667 0.00 0.00 0.00 4.61
2121 2133 2.291043 CGGTAAGCAGTCCCACCCT 61.291 63.158 0.00 0.00 0.00 4.34
2122 2134 1.299976 GGTAAGCAGTCCCACCCTG 59.700 63.158 0.00 0.00 0.00 4.45
2132 2144 3.813724 CCACCCTGCCCCCTGATC 61.814 72.222 0.00 0.00 0.00 2.92
2133 2145 3.813724 CACCCTGCCCCCTGATCC 61.814 72.222 0.00 0.00 0.00 3.36
2171 2183 4.443266 GCCCTCGTCTCTGCGCTT 62.443 66.667 9.73 0.00 0.00 4.68
2172 2184 2.507992 CCCTCGTCTCTGCGCTTG 60.508 66.667 9.73 1.08 0.00 4.01
2173 2185 2.507992 CCTCGTCTCTGCGCTTGG 60.508 66.667 9.73 0.00 0.00 3.61
2174 2186 2.507992 CTCGTCTCTGCGCTTGGG 60.508 66.667 9.73 0.96 0.00 4.12
2175 2187 4.742201 TCGTCTCTGCGCTTGGGC 62.742 66.667 9.73 2.60 0.00 5.36
2232 2244 4.057428 GATCCGCCCGATCCCTCG 62.057 72.222 0.00 0.00 41.51 4.63
2241 2253 3.607661 GATCCCTCGGCCTCGGTC 61.608 72.222 0.00 0.00 36.95 4.79
2335 2347 4.168291 GGCTTGCGGGGAGAGGAG 62.168 72.222 0.00 0.00 0.00 3.69
2336 2348 4.847444 GCTTGCGGGGAGAGGAGC 62.847 72.222 0.00 0.00 0.00 4.70
2337 2349 3.080121 CTTGCGGGGAGAGGAGCT 61.080 66.667 0.00 0.00 0.00 4.09
2338 2350 2.607750 TTGCGGGGAGAGGAGCTT 60.608 61.111 0.00 0.00 0.00 3.74
2339 2351 2.585791 CTTGCGGGGAGAGGAGCTTC 62.586 65.000 0.00 0.00 0.00 3.86
2340 2352 2.762043 GCGGGGAGAGGAGCTTCT 60.762 66.667 0.00 0.00 0.00 2.85
2341 2353 2.791868 GCGGGGAGAGGAGCTTCTC 61.792 68.421 14.80 14.80 42.31 2.87
2342 2354 2.485795 CGGGGAGAGGAGCTTCTCG 61.486 68.421 16.58 0.62 40.33 4.04
2343 2355 2.811799 GGGAGAGGAGCTTCTCGC 59.188 66.667 16.95 16.95 45.79 5.03
2344 2356 2.811799 GGAGAGGAGCTTCTCGCC 59.188 66.667 26.87 26.87 43.64 5.54
2345 2357 2.791868 GGAGAGGAGCTTCTCGCCC 61.792 68.421 29.62 23.03 44.54 6.13
2346 2358 2.762043 AGAGGAGCTTCTCGCCCC 60.762 66.667 16.58 0.00 40.39 5.80
2347 2359 3.077556 GAGGAGCTTCTCGCCCCA 61.078 66.667 6.18 0.00 39.36 4.96
2348 2360 3.080121 AGGAGCTTCTCGCCCCAG 61.080 66.667 0.00 0.00 39.36 4.45
2349 2361 4.168291 GGAGCTTCTCGCCCCAGG 62.168 72.222 0.00 0.00 36.35 4.45
2350 2362 4.847444 GAGCTTCTCGCCCCAGGC 62.847 72.222 0.00 0.00 46.75 4.85
2385 2397 4.395583 GTTGTGCGGCTGCTGCTC 62.396 66.667 31.19 27.64 43.34 4.26
2386 2398 4.933563 TTGTGCGGCTGCTGCTCA 62.934 61.111 31.19 29.74 43.34 4.26
2391 2403 2.816958 CGGCTGCTGCTCACGATT 60.817 61.111 15.64 0.00 39.59 3.34
2392 2404 2.393768 CGGCTGCTGCTCACGATTT 61.394 57.895 15.64 0.00 39.59 2.17
2393 2405 1.083806 CGGCTGCTGCTCACGATTTA 61.084 55.000 15.64 0.00 39.59 1.40
2394 2406 0.654683 GGCTGCTGCTCACGATTTAG 59.345 55.000 15.64 0.00 39.59 1.85
2395 2407 1.363744 GCTGCTGCTCACGATTTAGT 58.636 50.000 8.53 0.00 36.03 2.24
2396 2408 1.325943 GCTGCTGCTCACGATTTAGTC 59.674 52.381 8.53 0.00 36.03 2.59
2397 2409 2.886081 CTGCTGCTCACGATTTAGTCT 58.114 47.619 0.00 0.00 0.00 3.24
2398 2410 3.735208 GCTGCTGCTCACGATTTAGTCTA 60.735 47.826 8.53 0.00 36.03 2.59
2399 2411 4.033990 TGCTGCTCACGATTTAGTCTAG 57.966 45.455 0.00 0.00 0.00 2.43
2400 2412 2.792116 GCTGCTCACGATTTAGTCTAGC 59.208 50.000 0.00 0.00 33.27 3.42
2401 2413 3.735208 GCTGCTCACGATTTAGTCTAGCA 60.735 47.826 0.00 0.00 37.64 3.49
2402 2414 3.770666 TGCTCACGATTTAGTCTAGCAC 58.229 45.455 0.00 0.00 36.10 4.40
2403 2415 3.444034 TGCTCACGATTTAGTCTAGCACT 59.556 43.478 0.00 0.00 36.10 4.40
2404 2416 3.794028 GCTCACGATTTAGTCTAGCACTG 59.206 47.826 0.00 0.00 36.43 3.66
2405 2417 3.770666 TCACGATTTAGTCTAGCACTGC 58.229 45.455 0.00 0.00 36.43 4.40
2406 2418 3.444034 TCACGATTTAGTCTAGCACTGCT 59.556 43.478 8.95 8.95 43.41 4.24
2407 2419 3.549471 CACGATTTAGTCTAGCACTGCTG 59.451 47.826 14.15 4.17 40.10 4.41
2408 2420 2.537625 CGATTTAGTCTAGCACTGCTGC 59.462 50.000 14.15 4.12 44.63 5.25
2431 2443 4.813526 CCGCTGTCGTCGTCGGAG 62.814 72.222 1.55 0.00 44.23 4.63
2432 2444 4.086178 CGCTGTCGTCGTCGGAGT 62.086 66.667 1.55 0.00 37.69 3.85
2433 2445 2.202324 GCTGTCGTCGTCGGAGTC 60.202 66.667 1.55 0.00 37.69 3.36
2434 2446 2.096030 CTGTCGTCGTCGGAGTCG 59.904 66.667 1.55 0.00 41.01 4.18
2435 2447 3.978867 CTGTCGTCGTCGGAGTCGC 62.979 68.421 1.55 0.00 39.21 5.19
2436 2448 3.786586 GTCGTCGTCGGAGTCGCT 61.787 66.667 1.55 0.00 39.21 4.93
2437 2449 3.785499 TCGTCGTCGGAGTCGCTG 61.785 66.667 1.55 0.00 39.21 5.18
2463 2475 4.681978 GTGCTGCGGTCCCGTCTT 62.682 66.667 7.66 0.00 42.09 3.01
2464 2476 4.680237 TGCTGCGGTCCCGTCTTG 62.680 66.667 7.66 0.00 42.09 3.02
2465 2477 4.681978 GCTGCGGTCCCGTCTTGT 62.682 66.667 7.66 0.00 42.09 3.16
2466 2478 2.738521 CTGCGGTCCCGTCTTGTG 60.739 66.667 7.66 0.00 42.09 3.33
2467 2479 4.980805 TGCGGTCCCGTCTTGTGC 62.981 66.667 7.66 0.00 42.09 4.57
2469 2481 4.657824 CGGTCCCGTCTTGTGCGT 62.658 66.667 0.00 0.00 34.35 5.24
2470 2482 2.280592 GGTCCCGTCTTGTGCGTT 60.281 61.111 0.00 0.00 0.00 4.84
2471 2483 2.604174 GGTCCCGTCTTGTGCGTTG 61.604 63.158 0.00 0.00 0.00 4.10
2472 2484 2.970324 TCCCGTCTTGTGCGTTGC 60.970 61.111 0.00 0.00 0.00 4.17
2473 2485 2.972505 CCCGTCTTGTGCGTTGCT 60.973 61.111 0.00 0.00 0.00 3.91
2474 2486 2.542907 CCCGTCTTGTGCGTTGCTT 61.543 57.895 0.00 0.00 0.00 3.91
2475 2487 1.355210 CCGTCTTGTGCGTTGCTTT 59.645 52.632 0.00 0.00 0.00 3.51
2476 2488 0.929824 CCGTCTTGTGCGTTGCTTTG 60.930 55.000 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 4.446311 CCAGATGTAACCATTCCTTAGGGG 60.446 50.000 0.00 0.00 0.00 4.79
222 223 3.706086 ACACCTTTGACAAAAGATGCCTT 59.294 39.130 3.53 0.00 40.18 4.35
280 281 5.476945 ACAAAGTTTGTCTCACCAAGTCTTT 59.523 36.000 15.58 0.00 40.56 2.52
538 540 3.254411 TGCAATGTACGCCAGATGAAAAA 59.746 39.130 0.00 0.00 0.00 1.94
667 670 2.613977 CCTCTTTCGCCTTCTGACACAT 60.614 50.000 0.00 0.00 0.00 3.21
725 728 1.135083 CCCGATCGACACTACAAGCTT 60.135 52.381 18.66 0.00 0.00 3.74
859 862 6.594159 CCTTCATGAACCAGTTTACGTCTATT 59.406 38.462 3.38 0.00 0.00 1.73
958 961 8.005976 TCCCCTTATTTTACTGGTTGTTTTAGT 58.994 33.333 0.00 0.00 0.00 2.24
963 966 5.719563 CCATCCCCTTATTTTACTGGTTGTT 59.280 40.000 0.00 0.00 0.00 2.83
964 967 5.015817 TCCATCCCCTTATTTTACTGGTTGT 59.984 40.000 0.00 0.00 0.00 3.32
990 993 3.263425 TCACAAAACCCATAGGAGGTCTC 59.737 47.826 0.00 0.00 36.27 3.36
1031 1034 6.934645 ACTCCTAAACAGATCGTGATCAAAAA 59.065 34.615 12.10 0.00 40.22 1.94
1048 1051 1.619807 GCCCCTGCCGTACTCCTAAA 61.620 60.000 0.00 0.00 0.00 1.85
1056 1059 4.715130 AGGACAGCCCCTGCCGTA 62.715 66.667 0.00 0.00 38.69 4.02
1095 1098 2.757868 CCTCCAATTTCCGCCAACAATA 59.242 45.455 0.00 0.00 0.00 1.90
1143 1146 7.494952 CCAAACCTTATAGTTAGTGCTTCTACC 59.505 40.741 0.00 0.00 0.00 3.18
1145 1148 7.046033 GCCAAACCTTATAGTTAGTGCTTCTA 58.954 38.462 0.00 0.00 0.00 2.10
1156 1159 6.321435 GCAAGGATTAAGCCAAACCTTATAGT 59.679 38.462 13.21 0.00 45.09 2.12
1159 1163 5.022787 TGCAAGGATTAAGCCAAACCTTAT 58.977 37.500 13.21 0.00 45.09 1.73
1389 1401 5.073144 ACACCAATCCCTAGTCTCTGAAAAA 59.927 40.000 0.00 0.00 0.00 1.94
1418 1430 8.498054 AAAAGATACAATATCATCCATAGGCG 57.502 34.615 0.00 0.00 0.00 5.52
1507 1519 0.673644 ACCTAACCTCGCATGCACAC 60.674 55.000 19.57 0.00 0.00 3.82
1508 1520 0.036164 AACCTAACCTCGCATGCACA 59.964 50.000 19.57 1.88 0.00 4.57
1509 1521 1.933853 CTAACCTAACCTCGCATGCAC 59.066 52.381 19.57 0.00 0.00 4.57
1510 1522 1.134521 CCTAACCTAACCTCGCATGCA 60.135 52.381 19.57 4.02 0.00 3.96
1511 1523 1.138266 TCCTAACCTAACCTCGCATGC 59.862 52.381 7.91 7.91 0.00 4.06
1512 1524 2.224066 CCTCCTAACCTAACCTCGCATG 60.224 54.545 0.00 0.00 0.00 4.06
1513 1525 2.040178 CCTCCTAACCTAACCTCGCAT 58.960 52.381 0.00 0.00 0.00 4.73
1514 1526 1.006281 TCCTCCTAACCTAACCTCGCA 59.994 52.381 0.00 0.00 0.00 5.10
1515 1527 1.682323 CTCCTCCTAACCTAACCTCGC 59.318 57.143 0.00 0.00 0.00 5.03
1516 1528 1.682323 GCTCCTCCTAACCTAACCTCG 59.318 57.143 0.00 0.00 0.00 4.63
1517 1529 2.696187 CTGCTCCTCCTAACCTAACCTC 59.304 54.545 0.00 0.00 0.00 3.85
1518 1530 2.315155 TCTGCTCCTCCTAACCTAACCT 59.685 50.000 0.00 0.00 0.00 3.50
1519 1531 2.748388 TCTGCTCCTCCTAACCTAACC 58.252 52.381 0.00 0.00 0.00 2.85
1520 1532 3.961408 TGATCTGCTCCTCCTAACCTAAC 59.039 47.826 0.00 0.00 0.00 2.34
1521 1533 4.079154 TCTGATCTGCTCCTCCTAACCTAA 60.079 45.833 0.00 0.00 0.00 2.69
1522 1534 3.463704 TCTGATCTGCTCCTCCTAACCTA 59.536 47.826 0.00 0.00 0.00 3.08
1523 1535 2.246067 TCTGATCTGCTCCTCCTAACCT 59.754 50.000 0.00 0.00 0.00 3.50
1524 1536 2.364002 GTCTGATCTGCTCCTCCTAACC 59.636 54.545 0.00 0.00 0.00 2.85
1525 1537 2.034053 CGTCTGATCTGCTCCTCCTAAC 59.966 54.545 0.00 0.00 0.00 2.34
1526 1538 2.302260 CGTCTGATCTGCTCCTCCTAA 58.698 52.381 0.00 0.00 0.00 2.69
1527 1539 1.477740 CCGTCTGATCTGCTCCTCCTA 60.478 57.143 0.00 0.00 0.00 2.94
1528 1540 0.754957 CCGTCTGATCTGCTCCTCCT 60.755 60.000 0.00 0.00 0.00 3.69
1529 1541 1.739049 CCGTCTGATCTGCTCCTCC 59.261 63.158 0.00 0.00 0.00 4.30
1530 1542 1.067250 GCCGTCTGATCTGCTCCTC 59.933 63.158 0.00 0.00 0.00 3.71
1531 1543 2.430610 GGCCGTCTGATCTGCTCCT 61.431 63.158 0.00 0.00 0.00 3.69
1532 1544 2.107953 GGCCGTCTGATCTGCTCC 59.892 66.667 0.00 0.00 0.00 4.70
1533 1545 1.520342 GTGGCCGTCTGATCTGCTC 60.520 63.158 0.00 0.00 0.00 4.26
1534 1546 1.986757 AGTGGCCGTCTGATCTGCT 60.987 57.895 0.00 0.00 0.00 4.24
1535 1547 1.812922 CAGTGGCCGTCTGATCTGC 60.813 63.158 19.05 0.00 35.20 4.26
1536 1548 0.036952 AACAGTGGCCGTCTGATCTG 60.037 55.000 27.09 15.20 36.81 2.90
1537 1549 0.247736 GAACAGTGGCCGTCTGATCT 59.752 55.000 27.09 14.62 36.81 2.75
1538 1550 0.247736 AGAACAGTGGCCGTCTGATC 59.752 55.000 27.09 24.21 35.79 2.92
1539 1551 0.687354 AAGAACAGTGGCCGTCTGAT 59.313 50.000 27.09 18.83 36.81 2.90
1540 1552 0.033504 GAAGAACAGTGGCCGTCTGA 59.966 55.000 27.09 0.00 36.81 3.27
1541 1553 0.034059 AGAAGAACAGTGGCCGTCTG 59.966 55.000 21.22 21.22 38.68 3.51
1542 1554 0.034059 CAGAAGAACAGTGGCCGTCT 59.966 55.000 0.00 0.00 0.00 4.18
1543 1555 0.249911 ACAGAAGAACAGTGGCCGTC 60.250 55.000 0.00 0.00 0.00 4.79
1544 1556 0.532862 CACAGAAGAACAGTGGCCGT 60.533 55.000 0.00 0.00 33.35 5.68
1545 1557 0.532862 ACACAGAAGAACAGTGGCCG 60.533 55.000 0.00 0.00 39.73 6.13
1546 1558 2.143925 GTACACAGAAGAACAGTGGCC 58.856 52.381 0.00 0.00 39.73 5.36
1547 1559 2.802816 CAGTACACAGAAGAACAGTGGC 59.197 50.000 0.00 0.00 39.73 5.01
1548 1560 4.060038 ACAGTACACAGAAGAACAGTGG 57.940 45.455 0.00 0.00 39.73 4.00
1549 1561 5.687730 CAGTACAGTACACAGAAGAACAGTG 59.312 44.000 13.37 0.00 40.92 3.66
1550 1562 5.360144 ACAGTACAGTACACAGAAGAACAGT 59.640 40.000 13.37 0.00 0.00 3.55
1551 1563 5.833082 ACAGTACAGTACACAGAAGAACAG 58.167 41.667 13.37 0.00 0.00 3.16
1552 1564 5.221185 GGACAGTACAGTACACAGAAGAACA 60.221 44.000 13.37 0.00 0.00 3.18
1553 1565 5.221130 GGACAGTACAGTACACAGAAGAAC 58.779 45.833 13.37 0.00 0.00 3.01
1554 1566 4.023450 CGGACAGTACAGTACACAGAAGAA 60.023 45.833 13.37 0.00 0.00 2.52
1555 1567 3.501062 CGGACAGTACAGTACACAGAAGA 59.499 47.826 13.37 0.00 0.00 2.87
1556 1568 3.252701 ACGGACAGTACAGTACACAGAAG 59.747 47.826 13.37 2.67 0.00 2.85
1557 1569 3.004002 CACGGACAGTACAGTACACAGAA 59.996 47.826 13.37 0.00 0.00 3.02
1558 1570 2.551032 CACGGACAGTACAGTACACAGA 59.449 50.000 13.37 0.00 0.00 3.41
1559 1571 2.351447 CCACGGACAGTACAGTACACAG 60.351 54.545 13.37 5.08 0.00 3.66
1560 1572 1.610038 CCACGGACAGTACAGTACACA 59.390 52.381 13.37 0.00 0.00 3.72
1561 1573 1.668047 GCCACGGACAGTACAGTACAC 60.668 57.143 13.37 4.14 0.00 2.90
1562 1574 0.599558 GCCACGGACAGTACAGTACA 59.400 55.000 13.37 0.00 0.00 2.90
1563 1575 0.599558 TGCCACGGACAGTACAGTAC 59.400 55.000 2.05 2.05 0.00 2.73
1564 1576 0.599558 GTGCCACGGACAGTACAGTA 59.400 55.000 0.00 0.00 0.00 2.74
1565 1577 1.366366 GTGCCACGGACAGTACAGT 59.634 57.895 0.00 0.00 0.00 3.55
1566 1578 1.733041 CGTGCCACGGACAGTACAG 60.733 63.158 9.90 0.00 38.08 2.74
1567 1579 2.337170 CGTGCCACGGACAGTACA 59.663 61.111 9.90 0.00 38.08 2.90
1577 1589 1.872679 GAGCTACGCTACGTGCCAC 60.873 63.158 0.00 0.00 39.88 5.01
1578 1590 2.044555 AGAGCTACGCTACGTGCCA 61.045 57.895 0.00 0.00 39.88 4.92
1579 1591 1.586564 CAGAGCTACGCTACGTGCC 60.587 63.158 0.00 0.00 39.88 5.01
1580 1592 0.456312 AACAGAGCTACGCTACGTGC 60.456 55.000 0.00 4.85 39.88 5.34
1581 1593 1.912110 GAAACAGAGCTACGCTACGTG 59.088 52.381 0.00 0.00 39.88 4.49
1582 1594 1.135460 GGAAACAGAGCTACGCTACGT 60.135 52.381 0.00 0.00 39.88 3.57
1583 1595 1.135489 TGGAAACAGAGCTACGCTACG 60.135 52.381 0.00 0.00 34.88 3.51
1584 1596 2.260481 GTGGAAACAGAGCTACGCTAC 58.740 52.381 0.00 0.00 44.46 3.58
1585 1597 1.135489 CGTGGAAACAGAGCTACGCTA 60.135 52.381 0.00 0.00 44.46 4.26
1586 1598 0.388649 CGTGGAAACAGAGCTACGCT 60.389 55.000 0.00 0.00 44.46 5.07
1587 1599 2.070861 CGTGGAAACAGAGCTACGC 58.929 57.895 0.00 0.00 44.46 4.42
1588 1600 0.666274 TGCGTGGAAACAGAGCTACG 60.666 55.000 0.00 0.00 44.46 3.51
1589 1601 1.071605 CTGCGTGGAAACAGAGCTAC 58.928 55.000 0.00 0.00 44.46 3.58
1590 1602 0.966179 TCTGCGTGGAAACAGAGCTA 59.034 50.000 0.00 0.00 44.46 3.32
1591 1603 0.106708 TTCTGCGTGGAAACAGAGCT 59.893 50.000 0.00 0.00 43.43 4.09
1592 1604 0.235926 GTTCTGCGTGGAAACAGAGC 59.764 55.000 0.00 0.00 43.43 4.09
1593 1605 1.261619 GTGTTCTGCGTGGAAACAGAG 59.738 52.381 0.00 0.00 43.43 3.35
1594 1606 1.295792 GTGTTCTGCGTGGAAACAGA 58.704 50.000 0.00 0.00 44.46 3.41
1595 1607 1.013596 TGTGTTCTGCGTGGAAACAG 58.986 50.000 0.00 0.00 44.46 3.16
1596 1608 1.674359 ATGTGTTCTGCGTGGAAACA 58.326 45.000 0.00 0.00 38.70 2.83
1597 1609 2.774439 AATGTGTTCTGCGTGGAAAC 57.226 45.000 0.00 0.00 0.00 2.78
1598 1610 2.286713 CGAAATGTGTTCTGCGTGGAAA 60.287 45.455 0.00 0.00 0.00 3.13
1599 1611 1.262950 CGAAATGTGTTCTGCGTGGAA 59.737 47.619 0.00 0.00 0.00 3.53
1600 1612 0.865111 CGAAATGTGTTCTGCGTGGA 59.135 50.000 0.00 0.00 0.00 4.02
1601 1613 0.865111 TCGAAATGTGTTCTGCGTGG 59.135 50.000 0.00 0.00 0.00 4.94
1602 1614 1.722751 GCTCGAAATGTGTTCTGCGTG 60.723 52.381 0.00 0.00 0.00 5.34
1603 1615 0.512952 GCTCGAAATGTGTTCTGCGT 59.487 50.000 0.00 0.00 0.00 5.24
1604 1616 0.517132 CGCTCGAAATGTGTTCTGCG 60.517 55.000 8.21 8.21 34.73 5.18
1605 1617 0.790866 GCGCTCGAAATGTGTTCTGC 60.791 55.000 0.00 0.00 0.00 4.26
1606 1618 0.512518 TGCGCTCGAAATGTGTTCTG 59.487 50.000 9.73 0.00 0.00 3.02
1607 1619 0.512952 GTGCGCTCGAAATGTGTTCT 59.487 50.000 9.73 0.00 0.00 3.01
1608 1620 0.234625 TGTGCGCTCGAAATGTGTTC 59.765 50.000 9.73 0.00 0.00 3.18
1609 1621 0.041312 GTGTGCGCTCGAAATGTGTT 60.041 50.000 9.73 0.00 0.00 3.32
1610 1622 1.569493 GTGTGCGCTCGAAATGTGT 59.431 52.632 9.73 0.00 0.00 3.72
1611 1623 1.507713 CGTGTGCGCTCGAAATGTG 60.508 57.895 16.15 0.00 33.95 3.21
1612 1624 2.853210 CGTGTGCGCTCGAAATGT 59.147 55.556 16.15 0.00 33.95 2.71
1634 1646 0.039165 GAGAAAAACCAGGCGGCAAG 60.039 55.000 13.08 3.90 34.57 4.01
1635 1647 0.467290 AGAGAAAAACCAGGCGGCAA 60.467 50.000 13.08 0.00 34.57 4.52
1636 1648 0.398696 TAGAGAAAAACCAGGCGGCA 59.601 50.000 13.08 0.00 34.57 5.69
1637 1649 0.803117 GTAGAGAAAAACCAGGCGGC 59.197 55.000 0.00 0.00 34.57 6.53
1638 1650 2.076863 CTGTAGAGAAAAACCAGGCGG 58.923 52.381 0.00 0.00 38.77 6.13
1639 1651 2.076863 CCTGTAGAGAAAAACCAGGCG 58.923 52.381 0.00 0.00 36.58 5.52
1640 1652 3.418684 TCCTGTAGAGAAAAACCAGGC 57.581 47.619 0.00 0.00 41.96 4.85
1641 1653 6.150140 CAGAATTCCTGTAGAGAAAAACCAGG 59.850 42.308 0.65 0.00 43.26 4.45
1642 1654 6.936900 TCAGAATTCCTGTAGAGAAAAACCAG 59.063 38.462 0.65 0.00 43.38 4.00
1643 1655 6.837312 TCAGAATTCCTGTAGAGAAAAACCA 58.163 36.000 0.65 0.00 43.38 3.67
1644 1656 7.929941 ATCAGAATTCCTGTAGAGAAAAACC 57.070 36.000 0.65 0.00 43.38 3.27
1649 1661 9.823647 GTGAATAATCAGAATTCCTGTAGAGAA 57.176 33.333 0.65 0.00 43.38 2.87
1650 1662 8.424918 GGTGAATAATCAGAATTCCTGTAGAGA 58.575 37.037 0.65 0.00 43.38 3.10
1651 1663 8.428063 AGGTGAATAATCAGAATTCCTGTAGAG 58.572 37.037 0.65 0.00 43.38 2.43
1652 1664 8.324191 AGGTGAATAATCAGAATTCCTGTAGA 57.676 34.615 0.65 0.00 43.38 2.59
1653 1665 8.970859 AAGGTGAATAATCAGAATTCCTGTAG 57.029 34.615 0.65 0.00 43.38 2.74
1654 1666 9.753674 AAAAGGTGAATAATCAGAATTCCTGTA 57.246 29.630 0.65 0.00 43.38 2.74
1655 1667 8.655935 AAAAGGTGAATAATCAGAATTCCTGT 57.344 30.769 0.65 0.00 43.38 4.00
1678 1690 2.168521 TCATCAAAACCCCACGCAAAAA 59.831 40.909 0.00 0.00 0.00 1.94
1679 1691 1.757118 TCATCAAAACCCCACGCAAAA 59.243 42.857 0.00 0.00 0.00 2.44
1680 1692 1.403814 TCATCAAAACCCCACGCAAA 58.596 45.000 0.00 0.00 0.00 3.68
1681 1693 1.543802 GATCATCAAAACCCCACGCAA 59.456 47.619 0.00 0.00 0.00 4.85
1682 1694 1.173043 GATCATCAAAACCCCACGCA 58.827 50.000 0.00 0.00 0.00 5.24
1683 1695 1.401905 GAGATCATCAAAACCCCACGC 59.598 52.381 0.00 0.00 0.00 5.34
1684 1696 2.939103 GAGAGATCATCAAAACCCCACG 59.061 50.000 0.00 0.00 0.00 4.94
1685 1697 3.691609 GTGAGAGATCATCAAAACCCCAC 59.308 47.826 2.51 0.00 0.00 4.61
1686 1698 3.619733 CGTGAGAGATCATCAAAACCCCA 60.620 47.826 2.51 0.00 0.00 4.96
1687 1699 2.939103 CGTGAGAGATCATCAAAACCCC 59.061 50.000 2.51 0.00 0.00 4.95
1688 1700 3.600388 ACGTGAGAGATCATCAAAACCC 58.400 45.455 2.51 0.00 0.00 4.11
1689 1701 5.613358 AAACGTGAGAGATCATCAAAACC 57.387 39.130 2.51 0.00 0.00 3.27
1711 1723 9.874205 AGTGAGAAATCAAAAATTGTCTGAAAA 57.126 25.926 0.00 0.00 0.00 2.29
1712 1724 9.874205 AAGTGAGAAATCAAAAATTGTCTGAAA 57.126 25.926 0.00 0.00 0.00 2.69
1713 1725 9.874205 AAAGTGAGAAATCAAAAATTGTCTGAA 57.126 25.926 0.00 0.00 0.00 3.02
1714 1726 9.874205 AAAAGTGAGAAATCAAAAATTGTCTGA 57.126 25.926 0.00 0.00 0.00 3.27
1741 1753 4.267341 TCCCTCAAAACACCCCTAAAAA 57.733 40.909 0.00 0.00 0.00 1.94
1742 1754 3.975479 TCCCTCAAAACACCCCTAAAA 57.025 42.857 0.00 0.00 0.00 1.52
1743 1755 3.399644 TCATCCCTCAAAACACCCCTAAA 59.600 43.478 0.00 0.00 0.00 1.85
1744 1756 2.990284 TCATCCCTCAAAACACCCCTAA 59.010 45.455 0.00 0.00 0.00 2.69
1745 1757 2.638325 TCATCCCTCAAAACACCCCTA 58.362 47.619 0.00 0.00 0.00 3.53
1746 1758 1.455822 TCATCCCTCAAAACACCCCT 58.544 50.000 0.00 0.00 0.00 4.79
1747 1759 2.532250 ATCATCCCTCAAAACACCCC 57.468 50.000 0.00 0.00 0.00 4.95
1748 1760 4.089361 AGAAATCATCCCTCAAAACACCC 58.911 43.478 0.00 0.00 0.00 4.61
1749 1761 4.766891 TGAGAAATCATCCCTCAAAACACC 59.233 41.667 0.00 0.00 34.38 4.16
1750 1762 5.617751 CGTGAGAAATCATCCCTCAAAACAC 60.618 44.000 0.00 0.00 38.49 3.32
1751 1763 4.455533 CGTGAGAAATCATCCCTCAAAACA 59.544 41.667 0.00 0.00 38.49 2.83
1752 1764 4.455877 ACGTGAGAAATCATCCCTCAAAAC 59.544 41.667 0.00 0.00 38.49 2.43
1753 1765 4.455533 CACGTGAGAAATCATCCCTCAAAA 59.544 41.667 10.90 0.00 38.49 2.44
1754 1766 4.002982 CACGTGAGAAATCATCCCTCAAA 58.997 43.478 10.90 0.00 38.49 2.69
1755 1767 3.599343 CACGTGAGAAATCATCCCTCAA 58.401 45.455 10.90 0.00 38.49 3.02
1756 1768 2.093500 CCACGTGAGAAATCATCCCTCA 60.093 50.000 19.30 0.00 34.87 3.86
1757 1769 2.555199 CCACGTGAGAAATCATCCCTC 58.445 52.381 19.30 0.00 0.00 4.30
1758 1770 1.407437 GCCACGTGAGAAATCATCCCT 60.407 52.381 19.30 0.00 0.00 4.20
1759 1771 1.017387 GCCACGTGAGAAATCATCCC 58.983 55.000 19.30 0.00 0.00 3.85
1760 1772 1.017387 GGCCACGTGAGAAATCATCC 58.983 55.000 19.30 0.00 0.00 3.51
1761 1773 0.652592 CGGCCACGTGAGAAATCATC 59.347 55.000 19.30 0.00 34.81 2.92
1762 1774 0.744414 CCGGCCACGTGAGAAATCAT 60.744 55.000 19.30 0.00 38.78 2.45
1763 1775 1.375396 CCGGCCACGTGAGAAATCA 60.375 57.895 19.30 0.00 38.78 2.57
1764 1776 0.953960 AACCGGCCACGTGAGAAATC 60.954 55.000 19.30 0.00 38.78 2.17
1765 1777 1.072505 AACCGGCCACGTGAGAAAT 59.927 52.632 19.30 0.00 38.78 2.17
1766 1778 1.890041 CAACCGGCCACGTGAGAAA 60.890 57.895 19.30 0.00 38.78 2.52
1767 1779 2.280524 CAACCGGCCACGTGAGAA 60.281 61.111 19.30 0.00 38.78 2.87
1768 1780 4.980805 GCAACCGGCCACGTGAGA 62.981 66.667 19.30 0.00 38.78 3.27
1769 1781 4.988598 AGCAACCGGCCACGTGAG 62.989 66.667 19.30 8.47 46.50 3.51
1770 1782 4.980805 GAGCAACCGGCCACGTGA 62.981 66.667 19.30 0.00 46.50 4.35
1774 1786 3.723348 GAACGAGCAACCGGCCAC 61.723 66.667 0.00 0.00 46.50 5.01
1779 1791 4.117372 GACGCGAACGAGCAACCG 62.117 66.667 15.93 0.00 43.93 4.44
1780 1792 4.117372 CGACGCGAACGAGCAACC 62.117 66.667 15.93 0.00 43.93 3.77
1781 1793 3.317695 GACGACGCGAACGAGCAAC 62.318 63.158 28.40 14.39 43.93 4.17
1782 1794 3.095278 GACGACGCGAACGAGCAA 61.095 61.111 28.40 0.00 43.93 3.91
1811 1823 3.387225 GACGGTGGGCTTCCTAGGC 62.387 68.421 2.96 0.00 45.78 3.93
1812 1824 2.901042 GACGGTGGGCTTCCTAGG 59.099 66.667 0.82 0.82 0.00 3.02
1813 1825 2.494918 CGACGGTGGGCTTCCTAG 59.505 66.667 0.00 0.00 0.00 3.02
1814 1826 3.766691 GCGACGGTGGGCTTCCTA 61.767 66.667 0.00 0.00 0.00 2.94
1816 1828 4.699522 AAGCGACGGTGGGCTTCC 62.700 66.667 0.00 0.00 45.86 3.46
1817 1829 3.423154 CAAGCGACGGTGGGCTTC 61.423 66.667 11.75 0.00 45.86 3.86
1819 1831 3.767630 AAACAAGCGACGGTGGGCT 62.768 57.895 6.36 0.00 42.33 5.19
1820 1832 2.344521 AAAAACAAGCGACGGTGGGC 62.345 55.000 6.36 0.00 0.00 5.36
1821 1833 1.731093 AAAAACAAGCGACGGTGGG 59.269 52.632 6.36 1.95 0.00 4.61
1836 1848 1.202428 GGCGGCCTACAACAACAAAAA 60.202 47.619 12.87 0.00 0.00 1.94
1837 1849 0.386113 GGCGGCCTACAACAACAAAA 59.614 50.000 12.87 0.00 0.00 2.44
1838 1850 0.752009 TGGCGGCCTACAACAACAAA 60.752 50.000 21.46 0.00 0.00 2.83
1839 1851 1.152943 TGGCGGCCTACAACAACAA 60.153 52.632 21.46 0.00 0.00 2.83
1840 1852 1.599518 CTGGCGGCCTACAACAACA 60.600 57.895 21.46 0.00 0.00 3.33
1841 1853 2.332654 CCTGGCGGCCTACAACAAC 61.333 63.158 21.46 0.00 0.00 3.32
1842 1854 2.033448 CCTGGCGGCCTACAACAA 59.967 61.111 21.46 0.00 0.00 2.83
1860 1872 2.202797 CCAGTCGACAGGCATCGG 60.203 66.667 19.50 2.34 42.50 4.18
1861 1873 2.202797 CCCAGTCGACAGGCATCG 60.203 66.667 20.86 4.12 43.63 3.84
1862 1874 2.512515 GCCCAGTCGACAGGCATC 60.513 66.667 32.85 16.89 46.34 3.91
1866 1878 4.436998 GACGGCCCAGTCGACAGG 62.437 72.222 19.47 19.47 33.65 4.00
1867 1879 4.436998 GGACGGCCCAGTCGACAG 62.437 72.222 19.50 10.04 41.81 3.51
1886 1898 0.179092 ATTACTGCTAACGGCGACCC 60.179 55.000 16.62 0.00 45.43 4.46
1887 1899 1.648504 AATTACTGCTAACGGCGACC 58.351 50.000 16.62 0.00 45.43 4.79
1888 1900 3.861689 AGTTAATTACTGCTAACGGCGAC 59.138 43.478 16.62 0.00 45.43 5.19
1889 1901 4.107622 GAGTTAATTACTGCTAACGGCGA 58.892 43.478 16.62 0.00 45.43 5.54
1890 1902 3.061403 CGAGTTAATTACTGCTAACGGCG 60.061 47.826 4.80 4.80 45.43 6.46
1891 1903 3.244579 CCGAGTTAATTACTGCTAACGGC 59.755 47.826 0.00 0.00 37.17 5.68
1892 1904 3.244579 GCCGAGTTAATTACTGCTAACGG 59.755 47.826 0.00 0.00 40.40 4.44
1893 1905 4.110482 AGCCGAGTTAATTACTGCTAACG 58.890 43.478 0.00 0.00 35.13 3.18
1894 1906 6.091713 TCAAAGCCGAGTTAATTACTGCTAAC 59.908 38.462 0.00 0.00 35.66 2.34
1895 1907 6.091713 GTCAAAGCCGAGTTAATTACTGCTAA 59.908 38.462 0.00 0.00 35.66 3.09
1896 1908 5.579511 GTCAAAGCCGAGTTAATTACTGCTA 59.420 40.000 0.00 0.00 35.66 3.49
1897 1909 4.392138 GTCAAAGCCGAGTTAATTACTGCT 59.608 41.667 0.00 0.00 37.63 4.24
1898 1910 4.436986 GGTCAAAGCCGAGTTAATTACTGC 60.437 45.833 0.00 0.00 37.17 4.40
1899 1911 4.693566 TGGTCAAAGCCGAGTTAATTACTG 59.306 41.667 0.00 0.00 37.17 2.74
1900 1912 4.901868 TGGTCAAAGCCGAGTTAATTACT 58.098 39.130 0.00 0.00 40.71 2.24
1901 1913 5.616488 TTGGTCAAAGCCGAGTTAATTAC 57.384 39.130 0.00 0.00 0.00 1.89
1902 1914 6.249035 CTTTGGTCAAAGCCGAGTTAATTA 57.751 37.500 10.05 0.00 40.94 1.40
1903 1915 5.121221 CTTTGGTCAAAGCCGAGTTAATT 57.879 39.130 10.05 0.00 40.94 1.40
1904 1916 4.766404 CTTTGGTCAAAGCCGAGTTAAT 57.234 40.909 10.05 0.00 40.94 1.40
1918 1930 8.515414 AGTTATTAATTGCTTCTGACTTTGGTC 58.485 33.333 0.00 0.00 42.42 4.02
1919 1931 8.409358 AGTTATTAATTGCTTCTGACTTTGGT 57.591 30.769 0.00 0.00 0.00 3.67
1920 1932 7.693951 CGAGTTATTAATTGCTTCTGACTTTGG 59.306 37.037 0.00 0.00 0.00 3.28
1921 1933 7.217070 GCGAGTTATTAATTGCTTCTGACTTTG 59.783 37.037 0.00 0.00 0.00 2.77
1922 1934 7.094805 TGCGAGTTATTAATTGCTTCTGACTTT 60.095 33.333 0.00 0.00 0.00 2.66
1923 1935 6.371548 TGCGAGTTATTAATTGCTTCTGACTT 59.628 34.615 0.00 0.00 0.00 3.01
1924 1936 5.874810 TGCGAGTTATTAATTGCTTCTGACT 59.125 36.000 0.00 0.00 0.00 3.41
1925 1937 6.106877 TGCGAGTTATTAATTGCTTCTGAC 57.893 37.500 0.00 0.00 0.00 3.51
1926 1938 6.017934 GGATGCGAGTTATTAATTGCTTCTGA 60.018 38.462 7.07 0.00 0.00 3.27
1927 1939 6.138761 GGATGCGAGTTATTAATTGCTTCTG 58.861 40.000 7.07 0.00 0.00 3.02
1928 1940 5.822519 TGGATGCGAGTTATTAATTGCTTCT 59.177 36.000 7.07 0.00 0.00 2.85
1929 1941 6.060028 TGGATGCGAGTTATTAATTGCTTC 57.940 37.500 0.00 0.16 0.00 3.86
1930 1942 5.506317 GCTGGATGCGAGTTATTAATTGCTT 60.506 40.000 0.00 0.00 0.00 3.91
1931 1943 4.023707 GCTGGATGCGAGTTATTAATTGCT 60.024 41.667 0.00 0.00 0.00 3.91
1932 1944 4.222114 GCTGGATGCGAGTTATTAATTGC 58.778 43.478 0.00 0.00 0.00 3.56
1946 1958 2.158559 TCTCTCTATCTCGCTGGATGC 58.841 52.381 0.00 0.00 38.57 3.91
1947 1959 2.749076 CCTCTCTCTATCTCGCTGGATG 59.251 54.545 0.00 0.00 0.00 3.51
1948 1960 2.290896 CCCTCTCTCTATCTCGCTGGAT 60.291 54.545 0.00 0.00 0.00 3.41
1949 1961 1.073125 CCCTCTCTCTATCTCGCTGGA 59.927 57.143 0.00 0.00 0.00 3.86
1950 1962 1.073125 TCCCTCTCTCTATCTCGCTGG 59.927 57.143 0.00 0.00 0.00 4.85
1951 1963 2.038426 TCTCCCTCTCTCTATCTCGCTG 59.962 54.545 0.00 0.00 0.00 5.18
1952 1964 2.303022 CTCTCCCTCTCTCTATCTCGCT 59.697 54.545 0.00 0.00 0.00 4.93
1953 1965 2.301870 TCTCTCCCTCTCTCTATCTCGC 59.698 54.545 0.00 0.00 0.00 5.03
1954 1966 3.832490 TCTCTCTCCCTCTCTCTATCTCG 59.168 52.174 0.00 0.00 0.00 4.04
1955 1967 4.841246 ACTCTCTCTCCCTCTCTCTATCTC 59.159 50.000 0.00 0.00 0.00 2.75
1956 1968 4.832492 ACTCTCTCTCCCTCTCTCTATCT 58.168 47.826 0.00 0.00 0.00 1.98
1957 1969 4.322049 CGACTCTCTCTCCCTCTCTCTATC 60.322 54.167 0.00 0.00 0.00 2.08
1958 1970 3.578716 CGACTCTCTCTCCCTCTCTCTAT 59.421 52.174 0.00 0.00 0.00 1.98
1959 1971 2.963101 CGACTCTCTCTCCCTCTCTCTA 59.037 54.545 0.00 0.00 0.00 2.43
1960 1972 1.762957 CGACTCTCTCTCCCTCTCTCT 59.237 57.143 0.00 0.00 0.00 3.10
1961 1973 1.810412 GCGACTCTCTCTCCCTCTCTC 60.810 61.905 0.00 0.00 0.00 3.20
1962 1974 0.180406 GCGACTCTCTCTCCCTCTCT 59.820 60.000 0.00 0.00 0.00 3.10
1963 1975 0.818040 GGCGACTCTCTCTCCCTCTC 60.818 65.000 0.00 0.00 0.00 3.20
1964 1976 1.226262 GGCGACTCTCTCTCCCTCT 59.774 63.158 0.00 0.00 0.00 3.69
1965 1977 0.470766 TAGGCGACTCTCTCTCCCTC 59.529 60.000 0.00 0.00 43.67 4.30
1966 1978 1.145571 ATAGGCGACTCTCTCTCCCT 58.854 55.000 0.00 0.00 43.67 4.20
1967 1979 1.883926 GAATAGGCGACTCTCTCTCCC 59.116 57.143 0.00 0.00 43.67 4.30
1968 1980 2.577700 TGAATAGGCGACTCTCTCTCC 58.422 52.381 0.00 0.00 43.67 3.71
1969 1981 5.001232 AGTATGAATAGGCGACTCTCTCTC 58.999 45.833 0.00 0.00 43.67 3.20
1970 1982 4.980573 AGTATGAATAGGCGACTCTCTCT 58.019 43.478 0.00 0.00 43.67 3.10
1971 1983 5.001232 AGAGTATGAATAGGCGACTCTCTC 58.999 45.833 0.00 0.00 42.45 3.20
1972 1984 4.980573 AGAGTATGAATAGGCGACTCTCT 58.019 43.478 0.00 0.00 42.45 3.10
1973 1985 5.935789 ACTAGAGTATGAATAGGCGACTCTC 59.064 44.000 0.00 0.00 42.45 3.20
1974 1986 5.871834 ACTAGAGTATGAATAGGCGACTCT 58.128 41.667 0.00 7.87 46.52 3.24
1975 1987 6.875195 AGTACTAGAGTATGAATAGGCGACTC 59.125 42.308 0.00 0.00 35.82 3.36
1976 1988 6.771573 AGTACTAGAGTATGAATAGGCGACT 58.228 40.000 0.00 0.00 37.37 4.18
1977 1989 7.041235 ACAAGTACTAGAGTATGAATAGGCGAC 60.041 40.741 0.00 0.00 32.54 5.19
1978 1990 6.996879 ACAAGTACTAGAGTATGAATAGGCGA 59.003 38.462 0.00 0.00 32.54 5.54
1979 1991 7.041303 TGACAAGTACTAGAGTATGAATAGGCG 60.041 40.741 0.00 0.00 32.54 5.52
1980 1992 8.167605 TGACAAGTACTAGAGTATGAATAGGC 57.832 38.462 0.00 0.00 32.54 3.93
1985 1997 9.688091 AGAAGATGACAAGTACTAGAGTATGAA 57.312 33.333 0.00 0.00 32.54 2.57
1986 1998 9.688091 AAGAAGATGACAAGTACTAGAGTATGA 57.312 33.333 0.00 0.00 32.54 2.15
1987 1999 9.944663 GAAGAAGATGACAAGTACTAGAGTATG 57.055 37.037 0.00 0.00 32.54 2.39
1988 2000 9.127277 GGAAGAAGATGACAAGTACTAGAGTAT 57.873 37.037 0.00 0.00 32.54 2.12
1989 2001 7.556996 GGGAAGAAGATGACAAGTACTAGAGTA 59.443 40.741 0.00 0.00 0.00 2.59
1990 2002 6.378848 GGGAAGAAGATGACAAGTACTAGAGT 59.621 42.308 0.00 0.00 0.00 3.24
1991 2003 6.183360 GGGGAAGAAGATGACAAGTACTAGAG 60.183 46.154 0.00 0.00 0.00 2.43
1992 2004 5.657302 GGGGAAGAAGATGACAAGTACTAGA 59.343 44.000 0.00 0.00 0.00 2.43
1993 2005 5.450688 CGGGGAAGAAGATGACAAGTACTAG 60.451 48.000 0.00 0.00 0.00 2.57
1994 2006 4.401519 CGGGGAAGAAGATGACAAGTACTA 59.598 45.833 0.00 0.00 0.00 1.82
1995 2007 3.195825 CGGGGAAGAAGATGACAAGTACT 59.804 47.826 0.00 0.00 0.00 2.73
1996 2008 3.194968 TCGGGGAAGAAGATGACAAGTAC 59.805 47.826 0.00 0.00 0.00 2.73
1997 2009 3.437213 TCGGGGAAGAAGATGACAAGTA 58.563 45.455 0.00 0.00 0.00 2.24
1998 2010 2.257207 TCGGGGAAGAAGATGACAAGT 58.743 47.619 0.00 0.00 0.00 3.16
1999 2011 3.334583 TTCGGGGAAGAAGATGACAAG 57.665 47.619 0.00 0.00 0.00 3.16
2000 2012 6.328356 AAGCTTCGGGGAAGAAGATGACAA 62.328 45.833 9.43 0.00 44.90 3.18
2001 2013 4.892788 AAGCTTCGGGGAAGAAGATGACA 61.893 47.826 9.43 0.00 44.90 3.58
2002 2014 2.355209 AAGCTTCGGGGAAGAAGATGAC 60.355 50.000 9.43 0.00 44.90 3.06
2003 2015 1.909302 AAGCTTCGGGGAAGAAGATGA 59.091 47.619 9.43 0.00 44.90 2.92
2004 2016 2.093235 AGAAGCTTCGGGGAAGAAGATG 60.093 50.000 20.43 0.00 44.90 2.90
2008 2020 0.246635 CGAGAAGCTTCGGGGAAGAA 59.753 55.000 20.43 0.00 41.71 2.52
2009 2021 0.898789 ACGAGAAGCTTCGGGGAAGA 60.899 55.000 20.43 0.00 44.57 2.87
2010 2022 0.458716 GACGAGAAGCTTCGGGGAAG 60.459 60.000 20.43 11.46 44.57 3.46
2011 2023 1.590147 GACGAGAAGCTTCGGGGAA 59.410 57.895 20.43 0.00 44.57 3.97
2012 2024 2.348888 GGACGAGAAGCTTCGGGGA 61.349 63.158 20.43 0.00 44.57 4.81
2013 2025 2.184579 GGACGAGAAGCTTCGGGG 59.815 66.667 20.43 15.29 44.57 5.73
2014 2026 1.139947 GAGGACGAGAAGCTTCGGG 59.860 63.158 20.43 17.64 44.57 5.14
2015 2027 0.099791 GAGAGGACGAGAAGCTTCGG 59.900 60.000 20.43 17.98 44.57 4.30
2016 2028 0.099791 GGAGAGGACGAGAAGCTTCG 59.900 60.000 20.43 13.41 45.70 3.79
2017 2029 0.458260 GGGAGAGGACGAGAAGCTTC 59.542 60.000 19.11 19.11 0.00 3.86
2018 2030 0.973496 GGGGAGAGGACGAGAAGCTT 60.973 60.000 0.00 0.00 0.00 3.74
2019 2031 1.380650 GGGGAGAGGACGAGAAGCT 60.381 63.158 0.00 0.00 0.00 3.74
2020 2032 1.380650 AGGGGAGAGGACGAGAAGC 60.381 63.158 0.00 0.00 0.00 3.86
2021 2033 0.753848 GGAGGGGAGAGGACGAGAAG 60.754 65.000 0.00 0.00 0.00 2.85
2022 2034 1.306970 GGAGGGGAGAGGACGAGAA 59.693 63.158 0.00 0.00 0.00 2.87
2023 2035 2.691779 GGGAGGGGAGAGGACGAGA 61.692 68.421 0.00 0.00 0.00 4.04
2024 2036 2.123640 GGGAGGGGAGAGGACGAG 60.124 72.222 0.00 0.00 0.00 4.18
2025 2037 3.752167 GGGGAGGGGAGAGGACGA 61.752 72.222 0.00 0.00 0.00 4.20
2026 2038 4.862823 GGGGGAGGGGAGAGGACG 62.863 77.778 0.00 0.00 0.00 4.79
2027 2039 3.369388 AGGGGGAGGGGAGAGGAC 61.369 72.222 0.00 0.00 0.00 3.85
2028 2040 3.036959 GAGGGGGAGGGGAGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
2029 2041 4.548513 CGAGGGGGAGGGGAGAGG 62.549 77.778 0.00 0.00 0.00 3.69
2099 2111 4.832608 GGGACTGCTTACCGGCGG 62.833 72.222 27.06 27.06 43.58 6.13
2100 2112 4.077184 TGGGACTGCTTACCGGCG 62.077 66.667 0.00 0.00 34.52 6.46
2101 2113 2.436115 GTGGGACTGCTTACCGGC 60.436 66.667 0.00 0.00 0.00 6.13
2102 2114 2.267961 GGTGGGACTGCTTACCGG 59.732 66.667 0.00 0.00 0.00 5.28
2103 2115 2.267961 GGGTGGGACTGCTTACCG 59.732 66.667 0.00 0.00 34.01 4.02
2104 2116 1.299976 CAGGGTGGGACTGCTTACC 59.700 63.158 0.00 0.00 0.00 2.85
2115 2127 3.813724 GATCAGGGGGCAGGGTGG 61.814 72.222 0.00 0.00 0.00 4.61
2116 2128 3.813724 GGATCAGGGGGCAGGGTG 61.814 72.222 0.00 0.00 0.00 4.61
2154 2166 4.443266 AAGCGCAGAGACGAGGGC 62.443 66.667 11.47 0.00 43.19 5.19
2155 2167 2.507992 CAAGCGCAGAGACGAGGG 60.508 66.667 11.47 0.00 34.06 4.30
2156 2168 2.507992 CCAAGCGCAGAGACGAGG 60.508 66.667 11.47 0.00 34.06 4.63
2157 2169 2.507992 CCCAAGCGCAGAGACGAG 60.508 66.667 11.47 0.00 34.06 4.18
2158 2170 4.742201 GCCCAAGCGCAGAGACGA 62.742 66.667 11.47 0.00 34.06 4.20
2224 2236 3.607661 GACCGAGGCCGAGGGATC 61.608 72.222 21.05 8.92 38.22 3.36
2318 2330 4.168291 CTCCTCTCCCCGCAAGCC 62.168 72.222 0.00 0.00 0.00 4.35
2319 2331 4.847444 GCTCCTCTCCCCGCAAGC 62.847 72.222 0.00 0.00 0.00 4.01
2320 2332 2.585791 GAAGCTCCTCTCCCCGCAAG 62.586 65.000 0.00 0.00 0.00 4.01
2321 2333 2.607750 AAGCTCCTCTCCCCGCAA 60.608 61.111 0.00 0.00 0.00 4.85
2322 2334 3.077556 GAAGCTCCTCTCCCCGCA 61.078 66.667 0.00 0.00 0.00 5.69
2323 2335 2.762043 AGAAGCTCCTCTCCCCGC 60.762 66.667 0.00 0.00 0.00 6.13
2324 2336 2.485795 CGAGAAGCTCCTCTCCCCG 61.486 68.421 9.37 0.00 38.98 5.73
2325 2337 2.791868 GCGAGAAGCTCCTCTCCCC 61.792 68.421 9.37 0.00 44.04 4.81
2326 2338 2.811799 GCGAGAAGCTCCTCTCCC 59.188 66.667 9.37 0.00 44.04 4.30
2368 2380 4.395583 GAGCAGCAGCCGCACAAC 62.396 66.667 2.79 0.00 43.56 3.32
2369 2381 4.933563 TGAGCAGCAGCCGCACAA 62.934 61.111 2.79 0.00 43.56 3.33
2374 2386 1.083806 TAAATCGTGAGCAGCAGCCG 61.084 55.000 0.00 0.00 43.56 5.52
2375 2387 0.654683 CTAAATCGTGAGCAGCAGCC 59.345 55.000 0.00 0.00 43.56 4.85
2376 2388 1.325943 GACTAAATCGTGAGCAGCAGC 59.674 52.381 0.00 0.00 42.56 5.25
2377 2389 2.886081 AGACTAAATCGTGAGCAGCAG 58.114 47.619 0.00 0.00 0.00 4.24
2378 2390 3.735208 GCTAGACTAAATCGTGAGCAGCA 60.735 47.826 0.00 0.00 34.40 4.41
2379 2391 2.792116 GCTAGACTAAATCGTGAGCAGC 59.208 50.000 0.00 0.00 34.40 5.25
2380 2392 3.794028 GTGCTAGACTAAATCGTGAGCAG 59.206 47.826 0.00 0.00 40.71 4.24
2381 2393 3.444034 AGTGCTAGACTAAATCGTGAGCA 59.556 43.478 0.00 0.00 38.98 4.26
2382 2394 3.794028 CAGTGCTAGACTAAATCGTGAGC 59.206 47.826 0.00 0.00 34.67 4.26
2383 2395 3.794028 GCAGTGCTAGACTAAATCGTGAG 59.206 47.826 8.18 0.00 31.73 3.51
2384 2396 3.444034 AGCAGTGCTAGACTAAATCGTGA 59.556 43.478 18.11 0.00 36.99 4.35
2385 2397 3.549471 CAGCAGTGCTAGACTAAATCGTG 59.451 47.826 19.26 0.00 36.40 4.35
2386 2398 3.775202 CAGCAGTGCTAGACTAAATCGT 58.225 45.455 19.26 0.00 36.40 3.73
2414 2426 4.813526 CTCCGACGACGACAGCGG 62.814 72.222 9.28 9.23 44.83 5.52
2415 2427 3.978867 GACTCCGACGACGACAGCG 62.979 68.421 9.28 0.00 42.66 5.18
2416 2428 2.202324 GACTCCGACGACGACAGC 60.202 66.667 9.28 0.00 42.66 4.40
2417 2429 2.096030 CGACTCCGACGACGACAG 59.904 66.667 9.28 6.75 42.66 3.51
2418 2430 4.081030 GCGACTCCGACGACGACA 62.081 66.667 9.28 0.00 42.66 4.35
2419 2431 3.786586 AGCGACTCCGACGACGAC 61.787 66.667 9.28 0.00 42.66 4.34
2420 2432 3.785499 CAGCGACTCCGACGACGA 61.785 66.667 9.28 0.00 42.66 4.20
2446 2458 4.681978 AAGACGGGACCGCAGCAC 62.682 66.667 11.21 0.00 44.19 4.40
2447 2459 4.680237 CAAGACGGGACCGCAGCA 62.680 66.667 11.21 0.00 44.19 4.41
2448 2460 4.681978 ACAAGACGGGACCGCAGC 62.682 66.667 11.21 0.64 44.19 5.25
2449 2461 2.738521 CACAAGACGGGACCGCAG 60.739 66.667 11.21 0.88 44.19 5.18
2450 2462 4.980805 GCACAAGACGGGACCGCA 62.981 66.667 11.21 0.00 44.19 5.69
2452 2464 4.657824 ACGCACAAGACGGGACCG 62.658 66.667 9.56 9.56 46.03 4.79
2453 2465 2.280592 AACGCACAAGACGGGACC 60.281 61.111 0.00 0.00 34.00 4.46
2454 2466 2.935955 CAACGCACAAGACGGGAC 59.064 61.111 0.00 0.00 34.00 4.46
2455 2467 2.933878 AAGCAACGCACAAGACGGGA 62.934 55.000 0.00 0.00 34.00 5.14
2456 2468 2.058829 AAAGCAACGCACAAGACGGG 62.059 55.000 0.00 0.00 34.00 5.28
2457 2469 0.929824 CAAAGCAACGCACAAGACGG 60.930 55.000 0.00 0.00 34.00 4.79
2458 2470 2.483793 CAAAGCAACGCACAAGACG 58.516 52.632 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.