Multiple sequence alignment - TraesCS5B01G007500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G007500 chr5B 100.000 8233 0 0 1 8233 8545919 8537687 0.000000e+00 15204.0
1 TraesCS5B01G007500 chr5B 95.169 1780 72 8 4353 6127 22041638 22043408 0.000000e+00 2798.0
2 TraesCS5B01G007500 chr5B 89.855 1173 81 22 2940 4082 22040374 22041538 0.000000e+00 1472.0
3 TraesCS5B01G007500 chr5B 92.551 980 45 11 6580 7547 22044331 22045294 0.000000e+00 1380.0
4 TraesCS5B01G007500 chr5B 91.870 615 42 4 7616 8230 653005488 653006094 0.000000e+00 852.0
5 TraesCS5B01G007500 chr5B 91.111 585 30 7 654 1220 22036880 22037460 0.000000e+00 773.0
6 TraesCS5B01G007500 chr5B 91.575 546 42 3 1 545 22029444 22029986 0.000000e+00 750.0
7 TraesCS5B01G007500 chr5B 92.048 503 12 4 2438 2940 22039752 22040226 0.000000e+00 682.0
8 TraesCS5B01G007500 chr5B 81.857 700 87 25 3400 4082 8526746 8527422 3.360000e-153 553.0
9 TraesCS5B01G007500 chr5B 93.714 350 12 3 1982 2331 22038346 22038685 4.410000e-142 516.0
10 TraesCS5B01G007500 chr5B 93.713 334 17 3 1588 1917 22038003 22038336 1.600000e-136 497.0
11 TraesCS5B01G007500 chr5B 81.895 591 83 10 4378 4961 653007818 653007245 2.080000e-130 477.0
12 TraesCS5B01G007500 chr5B 81.218 591 95 9 4378 4961 8527544 8528125 5.820000e-126 462.0
13 TraesCS5B01G007500 chr5B 81.734 542 84 12 3117 3649 33116893 33116358 9.810000e-119 438.0
14 TraesCS5B01G007500 chr5B 81.963 438 59 13 5117 5542 8536601 8537030 3.660000e-93 353.0
15 TraesCS5B01G007500 chr5B 80.514 467 78 6 7771 8233 22044892 22044435 6.120000e-91 346.0
16 TraesCS5B01G007500 chr5B 78.471 497 84 13 6661 7148 8537667 8538149 3.730000e-78 303.0
17 TraesCS5B01G007500 chr5B 78.814 472 79 12 7771 8230 8538772 8539234 1.740000e-76 298.0
18 TraesCS5B01G007500 chr5B 89.030 237 22 3 5117 5350 653007093 653006858 2.910000e-74 291.0
19 TraesCS5B01G007500 chr5B 76.166 579 102 20 4401 4960 652934384 652934945 1.050000e-68 272.0
20 TraesCS5B01G007500 chr5B 95.570 158 4 1 1222 1379 22037495 22037649 4.930000e-62 250.0
21 TraesCS5B01G007500 chr5B 79.429 350 60 7 6748 7097 653001346 653001683 3.840000e-58 237.0
22 TraesCS5B01G007500 chr5B 86.000 200 21 5 1642 1838 8524440 8524635 3.010000e-49 207.0
23 TraesCS5B01G007500 chr5B 83.262 233 31 6 1644 1875 653010269 653010044 3.010000e-49 207.0
24 TraesCS5B01G007500 chr5B 88.953 172 8 5 1337 1508 22037835 22037995 1.400000e-47 202.0
25 TraesCS5B01G007500 chr5B 76.302 384 70 16 3519 3895 22091928 22092297 1.410000e-42 185.0
26 TraesCS5B01G007500 chr5B 94.805 77 4 0 4276 4352 22041531 22041607 4.040000e-23 121.0
27 TraesCS5B01G007500 chr5B 80.142 141 19 6 2332 2469 653009440 653009306 6.800000e-16 97.1
28 TraesCS5B01G007500 chr5B 89.474 76 6 2 1505 1578 622572321 622572396 2.450000e-15 95.3
29 TraesCS5B01G007500 chr5B 80.992 121 18 5 5046 5165 22094889 22095005 3.160000e-14 91.6
30 TraesCS5B01G007500 chr5A 94.130 3254 158 17 4356 7594 6624635 6621400 0.000000e+00 4920.0
31 TraesCS5B01G007500 chr5A 94.592 1128 45 9 2964 4082 6625886 6624766 0.000000e+00 1731.0
32 TraesCS5B01G007500 chr5A 89.762 967 46 19 2004 2940 6627111 6626168 0.000000e+00 1188.0
33 TraesCS5B01G007500 chr5A 80.736 1168 172 36 2952 4082 6616481 6617632 0.000000e+00 861.0
34 TraesCS5B01G007500 chr5A 81.207 1027 133 37 5121 6112 6618568 6619569 0.000000e+00 773.0
35 TraesCS5B01G007500 chr5A 89.372 621 51 8 7619 8233 6620227 6619616 0.000000e+00 767.0
36 TraesCS5B01G007500 chr5A 85.052 582 41 16 649 1218 6628323 6627776 1.210000e-152 551.0
37 TraesCS5B01G007500 chr5A 82.910 591 84 10 4378 4961 6617831 6618411 4.410000e-142 516.0
38 TraesCS5B01G007500 chr5A 91.967 361 22 4 1600 1956 6627477 6627120 4.440000e-137 499.0
39 TraesCS5B01G007500 chr5A 96.635 208 7 0 4072 4279 30629077 30629284 6.120000e-91 346.0
40 TraesCS5B01G007500 chr5A 78.351 582 90 21 4401 4961 6434848 6434282 2.200000e-90 344.0
41 TraesCS5B01G007500 chr5A 80.617 454 75 10 3496 3941 4997793 4997345 1.020000e-88 339.0
42 TraesCS5B01G007500 chr5A 79.036 477 86 10 6680 7151 6439326 6438859 1.720000e-81 315.0
43 TraesCS5B01G007500 chr5A 78.826 477 87 10 6680 7151 6445537 6445070 8.030000e-80 309.0
44 TraesCS5B01G007500 chr5A 84.227 317 49 1 4978 5294 4995945 4995630 2.890000e-79 307.0
45 TraesCS5B01G007500 chr5A 83.838 297 26 7 1216 1510 6627751 6627475 6.340000e-66 263.0
46 TraesCS5B01G007500 chr5A 77.494 431 89 7 5790 6215 6483653 6483226 1.370000e-62 252.0
47 TraesCS5B01G007500 chr5A 78.906 384 70 9 129 510 138427389 138427015 4.930000e-62 250.0
48 TraesCS5B01G007500 chr5A 78.272 405 73 11 7811 8213 6438910 6439301 6.380000e-61 246.0
49 TraesCS5B01G007500 chr5A 78.025 405 74 10 7811 8213 6445121 6445512 2.970000e-59 241.0
50 TraesCS5B01G007500 chr5A 84.793 217 31 1 6680 6894 6432992 6432776 5.000000e-52 217.0
51 TraesCS5B01G007500 chr5A 82.800 250 34 8 3667 3911 6485755 6485510 1.800000e-51 215.0
52 TraesCS5B01G007500 chr5A 84.689 209 23 4 8022 8228 6432783 6432984 5.040000e-47 200.0
53 TraesCS5B01G007500 chr5A 84.694 196 25 4 1644 1838 6615501 6615692 3.030000e-44 191.0
54 TraesCS5B01G007500 chr5A 89.474 95 7 3 1915 2008 709611145 709611053 5.220000e-22 117.0
55 TraesCS5B01G007500 chr5A 81.333 150 21 4 2332 2479 6616366 6616510 1.880000e-21 115.0
56 TraesCS5B01G007500 chr5D 94.216 1435 70 9 4356 5783 8417275 8415847 0.000000e+00 2178.0
57 TraesCS5B01G007500 chr5D 95.966 942 29 2 6361 7301 8415176 8414243 0.000000e+00 1520.0
58 TraesCS5B01G007500 chr5D 94.938 968 41 6 3118 4082 8418368 8417406 0.000000e+00 1509.0
59 TraesCS5B01G007500 chr5D 94.937 632 27 5 5784 6411 8415816 8415186 0.000000e+00 985.0
60 TraesCS5B01G007500 chr5D 94.471 416 16 3 7818 8233 8411837 8411429 1.170000e-177 634.0
61 TraesCS5B01G007500 chr5D 85.524 601 34 14 945 1506 8420325 8419739 5.540000e-161 579.0
62 TraesCS5B01G007500 chr5D 83.418 591 82 9 4378 4961 8409643 8410224 1.220000e-147 534.0
63 TraesCS5B01G007500 chr5D 94.286 350 13 6 1572 1917 8419742 8419396 5.660000e-146 529.0
64 TraesCS5B01G007500 chr5D 92.628 312 12 3 2629 2940 8418884 8418584 9.810000e-119 438.0
65 TraesCS5B01G007500 chr5D 92.388 289 21 1 7282 7570 8414234 8413947 2.140000e-110 411.0
66 TraesCS5B01G007500 chr5D 85.204 392 43 9 5117 5502 8410376 8410758 1.000000e-103 388.0
67 TraesCS5B01G007500 chr5D 96.170 235 8 1 1982 2216 8419386 8419153 4.660000e-102 383.0
68 TraesCS5B01G007500 chr5D 91.102 236 12 5 658 890 8420941 8420712 2.230000e-80 311.0
69 TraesCS5B01G007500 chr5D 86.813 273 30 5 5078 5348 8050460 8050192 4.830000e-77 300.0
70 TraesCS5B01G007500 chr5D 86.219 283 15 5 2244 2508 8419157 8418881 1.350000e-72 285.0
71 TraesCS5B01G007500 chr5D 77.642 492 93 9 5636 6124 8261385 8261862 4.860000e-72 283.0
72 TraesCS5B01G007500 chr5D 78.605 430 70 16 4969 5388 8260772 8261189 1.760000e-66 265.0
73 TraesCS5B01G007500 chr5D 77.910 421 66 14 5607 6025 8049429 8049034 3.840000e-58 237.0
74 TraesCS5B01G007500 chr5D 87.500 200 19 4 1642 1838 8407286 8407482 8.310000e-55 226.0
75 TraesCS5B01G007500 chr5D 90.533 169 11 3 7619 7785 8412004 8411839 1.390000e-52 219.0
76 TraesCS5B01G007500 chr5D 82.500 240 32 9 3674 3906 8259519 8259755 1.400000e-47 202.0
77 TraesCS5B01G007500 chr5D 77.576 330 58 12 175 494 561885084 561884761 1.410000e-42 185.0
78 TraesCS5B01G007500 chr5D 85.484 124 14 4 1914 2036 318879417 318879297 8.670000e-25 126.0
79 TraesCS5B01G007500 chr5D 86.364 110 12 3 1911 2019 342698122 342698229 5.220000e-22 117.0
80 TraesCS5B01G007500 chr5D 81.046 153 17 6 2330 2479 8408208 8408351 2.430000e-20 111.0
81 TraesCS5B01G007500 chr5D 97.826 46 1 0 5810 5855 8415846 8415801 6.850000e-11 80.5
82 TraesCS5B01G007500 chr5D 86.301 73 9 1 3112 3184 8052435 8052364 2.460000e-10 78.7
83 TraesCS5B01G007500 chr5D 100.000 41 0 0 2940 2980 8418406 8418366 8.860000e-10 76.8
84 TraesCS5B01G007500 chr4A 97.183 213 3 3 4072 4282 658241357 658241568 2.830000e-94 357.0
85 TraesCS5B01G007500 chr2B 97.596 208 5 0 4076 4283 47312869 47313076 2.830000e-94 357.0
86 TraesCS5B01G007500 chr2B 98.492 199 3 0 4083 4281 38073972 38073774 1.310000e-92 351.0
87 TraesCS5B01G007500 chr2B 85.088 114 13 4 1896 2008 198755166 198755056 6.750000e-21 113.0
88 TraesCS5B01G007500 chr1B 97.129 209 4 2 4075 4282 588495267 588495060 1.310000e-92 351.0
89 TraesCS5B01G007500 chr1B 95.413 218 7 3 4077 4293 24670454 24670239 2.200000e-90 344.0
90 TraesCS5B01G007500 chr1B 79.008 524 71 20 4382 4888 47634359 47633858 1.030000e-83 322.0
91 TraesCS5B01G007500 chr1B 82.388 335 43 12 5073 5400 47633514 47633189 2.260000e-70 278.0
92 TraesCS5B01G007500 chr1B 79.187 418 62 16 7809 8219 34251705 34252104 4.900000e-67 267.0
93 TraesCS5B01G007500 chr1B 78.613 346 54 12 5797 6127 47632724 47632384 2.330000e-50 211.0
94 TraesCS5B01G007500 chr1B 84.656 189 29 0 1678 1866 47636397 47636209 1.090000e-43 189.0
95 TraesCS5B01G007500 chr1B 76.771 353 63 15 160 506 543501335 543501674 6.570000e-41 180.0
96 TraesCS5B01G007500 chr6B 95.111 225 5 6 4075 4296 714947632 714947853 4.730000e-92 350.0
97 TraesCS5B01G007500 chr6B 78.095 210 33 10 5790 5994 635278114 635277913 4.040000e-23 121.0
98 TraesCS5B01G007500 chr3B 97.561 205 3 2 4078 4281 141816203 141816000 4.730000e-92 350.0
99 TraesCS5B01G007500 chr3B 87.619 105 8 4 1903 2005 450376653 450376552 5.220000e-22 117.0
100 TraesCS5B01G007500 chr3B 87.500 96 9 3 1912 2006 52742936 52742843 3.140000e-19 108.0
101 TraesCS5B01G007500 chr3B 92.105 76 4 2 1500 1575 745473414 745473341 1.130000e-18 106.0
102 TraesCS5B01G007500 chr1D 77.405 686 91 40 4382 5036 30084247 30083595 4.730000e-92 350.0
103 TraesCS5B01G007500 chr1D 82.583 333 46 9 5073 5400 30083399 30083074 4.860000e-72 283.0
104 TraesCS5B01G007500 chr1D 79.196 423 63 14 7803 8219 20946518 20946921 3.790000e-68 270.0
105 TraesCS5B01G007500 chr1D 78.329 383 66 10 6720 7098 20946898 20946529 1.790000e-56 231.0
106 TraesCS5B01G007500 chr1D 78.400 375 61 18 175 536 409523840 409524207 8.310000e-55 226.0
107 TraesCS5B01G007500 chr1D 85.185 189 28 0 1678 1866 30086036 30085848 2.340000e-45 195.0
108 TraesCS5B01G007500 chr1D 79.323 266 35 12 4706 4958 7019617 7019875 1.420000e-37 169.0
109 TraesCS5B01G007500 chr1D 90.000 60 6 0 3112 3171 7018455 7018514 2.460000e-10 78.7
110 TraesCS5B01G007500 chrUn 96.651 209 6 1 4069 4277 76852835 76853042 6.120000e-91 346.0
111 TraesCS5B01G007500 chrUn 85.830 247 24 2 1222 1467 268291012 268291248 1.370000e-62 252.0
112 TraesCS5B01G007500 chr6A 81.375 349 57 6 170 517 547631764 547631423 2.260000e-70 278.0
113 TraesCS5B01G007500 chr6A 83.471 121 15 5 1887 2004 506233638 506233756 3.140000e-19 108.0
114 TraesCS5B01G007500 chr6A 87.838 74 5 4 1502 1575 219208810 219208741 5.300000e-12 84.2
115 TraesCS5B01G007500 chr1A 78.390 472 62 21 4433 4888 30142345 30141898 3.790000e-68 270.0
116 TraesCS5B01G007500 chr1A 85.830 247 24 2 1222 1467 7987299 7987063 1.370000e-62 252.0
117 TraesCS5B01G007500 chr1A 76.190 504 86 23 5688 6174 30140828 30140342 1.380000e-57 235.0
118 TraesCS5B01G007500 chr1A 78.419 329 55 14 194 515 530591133 530591452 5.040000e-47 200.0
119 TraesCS5B01G007500 chr1A 90.141 142 11 3 1092 1233 7987460 7987322 1.830000e-41 182.0
120 TraesCS5B01G007500 chr4D 79.277 415 61 14 7803 8211 73348676 73349071 4.900000e-67 267.0
121 TraesCS5B01G007500 chr4D 79.370 349 61 10 219 563 422935118 422935459 1.380000e-57 235.0
122 TraesCS5B01G007500 chr4D 77.834 397 70 11 6707 7098 73349070 73348687 6.430000e-56 230.0
123 TraesCS5B01G007500 chr4D 78.221 326 57 14 199 518 7998062 7997745 6.520000e-46 196.0
124 TraesCS5B01G007500 chr4D 86.667 105 12 2 1897 2001 245478440 245478338 1.880000e-21 115.0
125 TraesCS5B01G007500 chr4D 86.667 105 12 2 1897 2001 282079930 282080032 1.880000e-21 115.0
126 TraesCS5B01G007500 chr2A 86.235 247 23 4 1222 1467 425029208 425028972 2.950000e-64 257.0
127 TraesCS5B01G007500 chr2A 90.845 142 10 3 1092 1233 425029371 425029233 3.920000e-43 187.0
128 TraesCS5B01G007500 chr2A 88.000 75 7 1 1505 1577 723121849 723121923 4.090000e-13 87.9
129 TraesCS5B01G007500 chr2A 87.179 78 5 4 1503 1575 607943016 607942939 5.300000e-12 84.2
130 TraesCS5B01G007500 chr3D 89.189 74 4 1 1506 1575 61038273 61038200 1.140000e-13 89.8
131 TraesCS5B01G007500 chr3D 85.897 78 6 3 1502 1574 61038196 61038273 2.460000e-10 78.7
132 TraesCS5B01G007500 chr3A 86.842 76 8 1 1502 1575 848160 848235 5.300000e-12 84.2
133 TraesCS5B01G007500 chr7B 86.486 74 5 2 1505 1578 591458135 591458067 8.860000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G007500 chr5B 8537687 8545919 8232 True 15204.000000 15204 100.000000 1 8233 1 chr5B.!!$R1 8232
1 TraesCS5B01G007500 chr5B 22036880 22045294 8414 False 869.100000 2798 92.748900 654 7547 10 chr5B.!!$F6 6893
2 TraesCS5B01G007500 chr5B 22029444 22029986 542 False 750.000000 750 91.575000 1 545 1 chr5B.!!$F1 544
3 TraesCS5B01G007500 chr5B 653001346 653006094 4748 False 544.500000 852 85.649500 6748 8230 2 chr5B.!!$F8 1482
4 TraesCS5B01G007500 chr5B 33116358 33116893 535 True 438.000000 438 81.734000 3117 3649 1 chr5B.!!$R3 532
5 TraesCS5B01G007500 chr5B 8524440 8528125 3685 False 407.333333 553 83.025000 1642 4961 3 chr5B.!!$F4 3319
6 TraesCS5B01G007500 chr5B 8536601 8539234 2633 False 318.000000 353 79.749333 5117 8230 3 chr5B.!!$F5 3113
7 TraesCS5B01G007500 chr5B 652934384 652934945 561 False 272.000000 272 76.166000 4401 4960 1 chr5B.!!$F3 559
8 TraesCS5B01G007500 chr5B 653006858 653010269 3411 True 268.025000 477 83.582250 1644 5350 4 chr5B.!!$R4 3706
9 TraesCS5B01G007500 chr5A 6619616 6628323 8707 True 1417.000000 4920 89.816143 649 8233 7 chr5A.!!$R8 7584
10 TraesCS5B01G007500 chr5A 6615501 6619569 4068 False 491.200000 861 82.176000 1644 6112 5 chr5A.!!$F5 4468
11 TraesCS5B01G007500 chr5A 4995630 4997793 2163 True 323.000000 339 82.422000 3496 5294 2 chr5A.!!$R5 1798
12 TraesCS5B01G007500 chr5A 6432776 6434848 2072 True 280.500000 344 81.572000 4401 6894 2 chr5A.!!$R6 2493
13 TraesCS5B01G007500 chr5A 6483226 6485755 2529 True 233.500000 252 80.147000 3667 6215 2 chr5A.!!$R7 2548
14 TraesCS5B01G007500 chr5D 8411429 8420941 9512 True 675.886667 2178 93.413600 658 8233 15 chr5D.!!$R4 7575
15 TraesCS5B01G007500 chr5D 8407286 8410758 3472 False 314.750000 534 84.292000 1642 5502 4 chr5D.!!$F3 3860
16 TraesCS5B01G007500 chr5D 8259519 8261862 2343 False 250.000000 283 79.582333 3674 6124 3 chr5D.!!$F2 2450
17 TraesCS5B01G007500 chr5D 8049034 8052435 3401 True 205.233333 300 83.674667 3112 6025 3 chr5D.!!$R3 2913
18 TraesCS5B01G007500 chr1B 47632384 47636397 4013 True 250.000000 322 81.166250 1678 6127 4 chr1B.!!$R3 4449
19 TraesCS5B01G007500 chr1D 30083074 30086036 2962 True 276.000000 350 81.724333 1678 5400 3 chr1D.!!$R2 3722
20 TraesCS5B01G007500 chr1A 30140342 30142345 2003 True 252.500000 270 77.290000 4433 6174 2 chr1A.!!$R2 1741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
184 185 0.242286 CTCAGTCGGTGACCAGACAG 59.758 60.000 22.01 16.54 39.67 3.51 F
329 331 0.249120 TGTTCAGTCCGCCATGTAGG 59.751 55.000 0.00 0.00 41.84 3.18 F
890 895 0.257616 CCCGCCCTTTTTATCTCCCA 59.742 55.000 0.00 0.00 0.00 4.37 F
1578 2267 0.321671 TGGAACTGAGGCAGTAGCAC 59.678 55.000 0.00 0.00 44.62 4.40 F
2303 3049 0.386838 GCTGTTTGCTTCAGGCTGTT 59.613 50.000 15.27 0.00 42.39 3.16 F
2673 4392 0.468029 CATAAGGGCCGGCCAATCTT 60.468 55.000 44.46 36.44 37.98 2.40 F
2674 4393 0.468029 ATAAGGGCCGGCCAATCTTG 60.468 55.000 44.46 0.00 37.98 3.02 F
4120 8038 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.000 9.78 0.00 40.15 5.54 F
4134 8052 0.171231 GGCGGACCTCTTTCAAATGC 59.829 55.000 0.00 0.00 0.00 3.56 F
4155 8073 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70 F
4250 8168 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70 F
5009 10184 1.574702 CTGTTTCGCCTTTCCCCGTC 61.575 60.000 0.00 0.00 0.00 4.79 F
6246 12589 1.134491 GGTCTTCCATTTCGTCGGGAT 60.134 52.381 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 2248 0.321671 GTGCTACTGCCTCAGTTCCA 59.678 55.000 4.70 0.82 42.59 3.53 R
1560 2249 0.610687 AGTGCTACTGCCTCAGTTCC 59.389 55.000 4.70 0.00 42.59 3.62 R
2149 2891 0.759346 AGAGTGAGGCTGGAACGTTT 59.241 50.000 0.46 0.00 0.00 3.60 R
2635 4354 1.334556 TGCGGATGCTGATAAACATGC 59.665 47.619 0.00 0.00 43.34 4.06 R
4101 8019 0.032130 TCCGCCGCTAAGATGCTTAG 59.968 55.000 9.30 9.30 0.00 2.18 R
4115 8033 0.171231 GCATTTGAAAGAGGTCCGCC 59.829 55.000 0.00 0.00 0.00 6.13 R
4136 8054 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97 R
5411 10645 3.009473 AGCAGGAATAGGAAACAGCTTCA 59.991 43.478 0.00 0.00 35.55 3.02 R
5910 12229 4.809426 GCCTGACAATATACCTGTGTGTAC 59.191 45.833 0.00 0.00 0.00 2.90 R
6009 12338 6.037391 CACACTGCAAAGGTCAATCAATTTTT 59.963 34.615 0.00 0.00 0.00 1.94 R
6148 12485 6.195700 ACCACTAGCTCTAGAATGGAACTTA 58.804 40.000 16.08 0.00 36.97 2.24 R
6910 13810 0.613777 GTCAGTTTCGACCCTCCCAT 59.386 55.000 0.00 0.00 0.00 4.00 R
8105 19476 1.001020 TGGCTTCGCATGGGTGATT 60.001 52.632 9.86 0.00 32.68 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.710567 GGCCCTAAACTCAACTCTTTACAAT 59.289 40.000 0.00 0.00 0.00 2.71
122 123 9.282247 GTCACAAGTTTGATATAAGAGCATTTG 57.718 33.333 0.00 0.00 0.00 2.32
126 127 7.636150 AGTTTGATATAAGAGCATTTGCAGT 57.364 32.000 5.20 0.00 45.16 4.40
146 147 1.160329 CGGCATCGTCAAATCCTCCC 61.160 60.000 0.00 0.00 0.00 4.30
156 157 4.340617 GTCAAATCCTCCCCAAACATACA 58.659 43.478 0.00 0.00 0.00 2.29
161 162 3.189606 TCCTCCCCAAACATACACAGAT 58.810 45.455 0.00 0.00 0.00 2.90
168 169 2.385013 AACATACACAGATGCGCTCA 57.615 45.000 9.73 0.00 0.00 4.26
173 174 2.163390 CACAGATGCGCTCAGTCGG 61.163 63.158 9.73 5.18 0.00 4.79
184 185 0.242286 CTCAGTCGGTGACCAGACAG 59.758 60.000 22.01 16.54 39.67 3.51
195 196 2.634940 TGACCAGACAGGAGAAAGAAGG 59.365 50.000 0.00 0.00 41.22 3.46
214 216 5.899547 AGAAGGAAAGAAAAAGTGACCCAAT 59.100 36.000 0.00 0.00 0.00 3.16
215 217 6.384015 AGAAGGAAAGAAAAAGTGACCCAATT 59.616 34.615 0.00 0.00 0.00 2.32
226 228 1.715931 TGACCCAATTGGAACCCTCAT 59.284 47.619 26.60 0.44 37.39 2.90
234 236 5.203528 CAATTGGAACCCTCATACCATCTT 58.796 41.667 0.00 0.00 32.31 2.40
243 245 5.245526 ACCCTCATACCATCTTTATACGTCC 59.754 44.000 0.00 0.00 0.00 4.79
251 253 1.952296 TCTTTATACGTCCGGGCTCTC 59.048 52.381 3.66 0.00 0.00 3.20
290 292 6.726490 TGAGTACAAATGTAGGGAGGATAC 57.274 41.667 0.00 0.00 0.00 2.24
295 297 2.606751 ATGTAGGGAGGATACGAGGG 57.393 55.000 0.00 0.00 46.39 4.30
311 313 3.344215 GGCTCGCGGATGCATCTG 61.344 66.667 28.05 28.05 42.97 2.90
319 321 1.293924 CGGATGCATCTGTTCAGTCC 58.706 55.000 24.85 7.22 0.00 3.85
321 323 0.654683 GATGCATCTGTTCAGTCCGC 59.345 55.000 19.70 2.72 0.00 5.54
328 330 1.204704 TCTGTTCAGTCCGCCATGTAG 59.795 52.381 0.00 0.00 0.00 2.74
329 331 0.249120 TGTTCAGTCCGCCATGTAGG 59.751 55.000 0.00 0.00 41.84 3.18
340 342 1.071471 CATGTAGGACCGGCCCATC 59.929 63.158 10.37 1.52 37.37 3.51
344 346 1.155390 TAGGACCGGCCCATCCTAG 59.845 63.158 21.01 0.00 43.85 3.02
370 372 8.712228 ACCACCTTTTCTCTTTCTTTATTCAT 57.288 30.769 0.00 0.00 0.00 2.57
405 407 6.134754 TCTCTCTCTTCATCTCCATCAATCA 58.865 40.000 0.00 0.00 0.00 2.57
470 472 8.383175 AGTGGGGATGTATGAACGAATAAATAT 58.617 33.333 0.00 0.00 0.00 1.28
471 473 9.661563 GTGGGGATGTATGAACGAATAAATATA 57.338 33.333 0.00 0.00 0.00 0.86
478 480 9.772973 TGTATGAACGAATAAATATAGGTGCTT 57.227 29.630 0.00 0.00 0.00 3.91
488 490 8.967664 ATAAATATAGGTGCTTAAAACGGACA 57.032 30.769 0.00 0.00 0.00 4.02
531 533 1.078001 CCGCGAATGTTTAGGGGGT 60.078 57.895 8.23 0.00 34.77 4.95
545 547 1.551019 GGGGGTCGGACTTGCTAAGT 61.551 60.000 8.23 1.82 46.38 2.24
557 559 5.700402 ACTTGCTAAGTCCCATTGTAGAT 57.300 39.130 0.00 0.00 37.02 1.98
558 560 5.431765 ACTTGCTAAGTCCCATTGTAGATG 58.568 41.667 0.00 0.00 37.02 2.90
559 561 3.808728 TGCTAAGTCCCATTGTAGATGC 58.191 45.455 0.00 0.00 0.00 3.91
560 562 3.455910 TGCTAAGTCCCATTGTAGATGCT 59.544 43.478 0.00 0.00 0.00 3.79
561 563 4.061596 GCTAAGTCCCATTGTAGATGCTC 58.938 47.826 0.00 0.00 0.00 4.26
562 564 4.202305 GCTAAGTCCCATTGTAGATGCTCT 60.202 45.833 0.00 0.00 0.00 4.09
563 565 4.851639 AAGTCCCATTGTAGATGCTCTT 57.148 40.909 0.00 0.00 0.00 2.85
564 566 5.957771 AAGTCCCATTGTAGATGCTCTTA 57.042 39.130 0.00 0.00 0.00 2.10
565 567 6.506538 AAGTCCCATTGTAGATGCTCTTAT 57.493 37.500 0.00 0.00 0.00 1.73
566 568 7.618019 AAGTCCCATTGTAGATGCTCTTATA 57.382 36.000 0.00 0.00 0.00 0.98
567 569 7.805083 AGTCCCATTGTAGATGCTCTTATAT 57.195 36.000 0.00 0.00 0.00 0.86
568 570 8.901472 AGTCCCATTGTAGATGCTCTTATATA 57.099 34.615 0.00 0.00 0.00 0.86
569 571 8.976353 AGTCCCATTGTAGATGCTCTTATATAG 58.024 37.037 0.00 0.00 0.00 1.31
570 572 8.754080 GTCCCATTGTAGATGCTCTTATATAGT 58.246 37.037 0.00 0.00 0.00 2.12
571 573 9.990868 TCCCATTGTAGATGCTCTTATATAGTA 57.009 33.333 0.00 0.00 0.00 1.82
583 585 8.740906 TGCTCTTATATAGTATTCCTCCTTTCG 58.259 37.037 0.00 0.00 0.00 3.46
584 586 8.741841 GCTCTTATATAGTATTCCTCCTTTCGT 58.258 37.037 0.00 0.00 0.00 3.85
586 588 9.584008 TCTTATATAGTATTCCTCCTTTCGTGT 57.416 33.333 0.00 0.00 0.00 4.49
587 589 9.627395 CTTATATAGTATTCCTCCTTTCGTGTG 57.373 37.037 0.00 0.00 0.00 3.82
588 590 3.611766 AGTATTCCTCCTTTCGTGTGG 57.388 47.619 0.00 0.00 0.00 4.17
589 591 3.170717 AGTATTCCTCCTTTCGTGTGGA 58.829 45.455 0.00 0.00 0.00 4.02
590 592 3.581332 AGTATTCCTCCTTTCGTGTGGAA 59.419 43.478 0.00 0.00 40.49 3.53
591 593 3.721087 ATTCCTCCTTTCGTGTGGAAT 57.279 42.857 0.00 0.00 41.17 3.01
592 594 4.837093 ATTCCTCCTTTCGTGTGGAATA 57.163 40.909 0.00 0.00 43.28 1.75
593 595 4.837093 TTCCTCCTTTCGTGTGGAATAT 57.163 40.909 0.00 0.00 33.85 1.28
594 596 5.943349 TTCCTCCTTTCGTGTGGAATATA 57.057 39.130 0.00 0.00 33.85 0.86
595 597 6.494666 TTCCTCCTTTCGTGTGGAATATAT 57.505 37.500 0.00 0.00 33.85 0.86
596 598 7.606135 TTCCTCCTTTCGTGTGGAATATATA 57.394 36.000 0.00 0.00 33.85 0.86
597 599 7.606135 TCCTCCTTTCGTGTGGAATATATAA 57.394 36.000 0.00 0.00 33.85 0.98
598 600 7.667557 TCCTCCTTTCGTGTGGAATATATAAG 58.332 38.462 0.00 0.00 33.85 1.73
599 601 7.507956 TCCTCCTTTCGTGTGGAATATATAAGA 59.492 37.037 0.00 0.00 33.85 2.10
600 602 7.599245 CCTCCTTTCGTGTGGAATATATAAGAC 59.401 40.741 0.00 0.00 33.85 3.01
601 603 7.143340 TCCTTTCGTGTGGAATATATAAGACG 58.857 38.462 6.41 6.41 33.85 4.18
602 604 6.128902 CCTTTCGTGTGGAATATATAAGACGC 60.129 42.308 7.42 1.59 33.85 5.19
603 605 5.700722 TCGTGTGGAATATATAAGACGCT 57.299 39.130 7.42 0.00 0.00 5.07
604 606 6.080648 TCGTGTGGAATATATAAGACGCTT 57.919 37.500 7.42 0.00 0.00 4.68
605 607 6.509656 TCGTGTGGAATATATAAGACGCTTT 58.490 36.000 7.42 0.00 0.00 3.51
606 608 6.982141 TCGTGTGGAATATATAAGACGCTTTT 59.018 34.615 7.42 0.00 0.00 2.27
607 609 7.168637 TCGTGTGGAATATATAAGACGCTTTTC 59.831 37.037 7.42 0.00 0.00 2.29
608 610 7.281484 GTGTGGAATATATAAGACGCTTTTCG 58.719 38.462 0.00 0.00 45.38 3.46
609 611 6.422701 TGTGGAATATATAAGACGCTTTTCGG 59.577 38.462 0.00 0.00 43.86 4.30
610 612 6.423001 GTGGAATATATAAGACGCTTTTCGGT 59.577 38.462 0.00 0.00 43.86 4.69
611 613 7.596248 GTGGAATATATAAGACGCTTTTCGGTA 59.404 37.037 0.00 0.00 43.86 4.02
612 614 7.596248 TGGAATATATAAGACGCTTTTCGGTAC 59.404 37.037 0.00 0.00 43.86 3.34
613 615 7.596248 GGAATATATAAGACGCTTTTCGGTACA 59.404 37.037 0.00 0.00 43.86 2.90
614 616 8.876275 AATATATAAGACGCTTTTCGGTACAA 57.124 30.769 0.00 0.00 43.86 2.41
615 617 6.823678 ATATAAGACGCTTTTCGGTACAAG 57.176 37.500 0.00 0.00 43.86 3.16
616 618 2.521105 AGACGCTTTTCGGTACAAGT 57.479 45.000 0.00 0.00 43.86 3.16
617 619 3.648339 AGACGCTTTTCGGTACAAGTA 57.352 42.857 0.00 0.00 43.86 2.24
618 620 4.184079 AGACGCTTTTCGGTACAAGTAT 57.816 40.909 0.00 0.00 43.86 2.12
619 621 4.563061 AGACGCTTTTCGGTACAAGTATT 58.437 39.130 0.00 0.00 43.86 1.89
621 623 4.309099 ACGCTTTTCGGTACAAGTATTGA 58.691 39.130 0.00 0.00 46.46 2.57
622 624 4.751098 ACGCTTTTCGGTACAAGTATTGAA 59.249 37.500 0.00 0.00 46.46 2.69
623 625 5.077424 CGCTTTTCGGTACAAGTATTGAAC 58.923 41.667 0.00 0.00 41.09 3.18
624 626 5.893685 CGCTTTTCGGTACAAGTATTGAACC 60.894 44.000 0.00 0.00 41.09 3.62
625 627 8.203893 CGCTTTTCGGTACAAGTATTGAACCA 62.204 42.308 0.00 0.00 41.09 3.67
626 628 9.418552 CGCTTTTCGGTACAAGTATTGAACCAT 62.419 40.741 0.00 0.00 41.09 3.55
765 770 1.073199 CGGAGCAAAAGTGAGGGGT 59.927 57.895 0.00 0.00 0.00 4.95
767 772 0.895559 GGAGCAAAAGTGAGGGGTGG 60.896 60.000 0.00 0.00 0.00 4.61
769 774 2.574018 GCAAAAGTGAGGGGTGGGC 61.574 63.158 0.00 0.00 0.00 5.36
862 867 4.675303 TCCCCCACCCACTCCCTG 62.675 72.222 0.00 0.00 0.00 4.45
886 891 2.089201 CGTTTCCCGCCCTTTTTATCT 58.911 47.619 0.00 0.00 0.00 1.98
890 895 0.257616 CCCGCCCTTTTTATCTCCCA 59.742 55.000 0.00 0.00 0.00 4.37
891 896 1.680338 CCGCCCTTTTTATCTCCCAG 58.320 55.000 0.00 0.00 0.00 4.45
900 905 2.500381 TTATCTCCCAGCCCACCCCA 62.500 60.000 0.00 0.00 0.00 4.96
930 1283 1.135141 CGACTCCAGAAGCTTCCTCAG 60.135 57.143 22.81 16.82 0.00 3.35
946 1307 3.394836 AGTTCCTCGCCTGGCTCC 61.395 66.667 17.92 0.00 0.00 4.70
987 1350 2.115911 GCCGGCGAAGAGAGAGAGA 61.116 63.158 12.58 0.00 0.00 3.10
997 1360 0.478507 GAGAGAGAGAGAGGGAGGGG 59.521 65.000 0.00 0.00 0.00 4.79
1075 1449 1.134699 GTGAATCCATCGCTCTGTCCA 60.135 52.381 0.00 0.00 35.60 4.02
1274 1714 0.616395 TAGGGTCGATTCAGCCACCA 60.616 55.000 0.00 0.00 36.28 4.17
1323 1763 0.606944 ATTTCGTAGGCCGGTTTGCA 60.607 50.000 1.90 0.00 37.11 4.08
1373 1814 2.485814 GGTTTTCTAGCTGCAGACAAGG 59.514 50.000 20.43 2.04 0.00 3.61
1392 2058 5.175859 CAAGGGACGATTTCTTAAGTAGCA 58.824 41.667 1.63 0.00 0.00 3.49
1393 2059 4.756502 AGGGACGATTTCTTAAGTAGCAC 58.243 43.478 1.63 0.00 0.00 4.40
1395 2061 3.550678 GGACGATTTCTTAAGTAGCACGG 59.449 47.826 1.63 0.00 0.00 4.94
1396 2062 3.518590 ACGATTTCTTAAGTAGCACGGG 58.481 45.455 1.63 0.00 0.00 5.28
1426 2092 6.097356 ACGTGATTCTTGCTACGATTTCTAA 58.903 36.000 0.00 0.00 39.61 2.10
1427 2093 6.757010 ACGTGATTCTTGCTACGATTTCTAAT 59.243 34.615 0.00 0.00 39.61 1.73
1467 2133 5.020795 GGAATTTGGGGGCTTTTCTAGTTA 58.979 41.667 0.00 0.00 0.00 2.24
1474 2140 4.263374 GGGGGCTTTTCTAGTTACAGTCTT 60.263 45.833 0.00 0.00 0.00 3.01
1510 2199 9.099454 CAGTGACATTTCTTAATTAGTACTCCC 57.901 37.037 0.00 0.00 0.00 4.30
1511 2200 9.047947 AGTGACATTTCTTAATTAGTACTCCCT 57.952 33.333 0.00 0.00 0.00 4.20
1512 2201 9.315525 GTGACATTTCTTAATTAGTACTCCCTC 57.684 37.037 0.00 0.00 0.00 4.30
1513 2202 8.483758 TGACATTTCTTAATTAGTACTCCCTCC 58.516 37.037 0.00 0.00 0.00 4.30
1514 2203 7.498443 ACATTTCTTAATTAGTACTCCCTCCG 58.502 38.462 0.00 0.00 0.00 4.63
1515 2204 7.125356 ACATTTCTTAATTAGTACTCCCTCCGT 59.875 37.037 0.00 0.00 0.00 4.69
1516 2205 7.486407 TTTCTTAATTAGTACTCCCTCCGTT 57.514 36.000 0.00 0.00 0.00 4.44
1517 2206 6.705863 TCTTAATTAGTACTCCCTCCGTTC 57.294 41.667 0.00 0.00 0.00 3.95
1518 2207 5.595952 TCTTAATTAGTACTCCCTCCGTTCC 59.404 44.000 0.00 0.00 0.00 3.62
1519 2208 2.905415 TTAGTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
1520 2209 3.393426 TTAGTACTCCCTCCGTTCCAT 57.607 47.619 0.00 0.00 0.00 3.41
1521 2210 4.524802 TTAGTACTCCCTCCGTTCCATA 57.475 45.455 0.00 0.00 0.00 2.74
1522 2211 3.614568 AGTACTCCCTCCGTTCCATAT 57.385 47.619 0.00 0.00 0.00 1.78
1523 2212 3.924922 AGTACTCCCTCCGTTCCATATT 58.075 45.455 0.00 0.00 0.00 1.28
1524 2213 5.070823 AGTACTCCCTCCGTTCCATATTA 57.929 43.478 0.00 0.00 0.00 0.98
1525 2214 4.831710 AGTACTCCCTCCGTTCCATATTAC 59.168 45.833 0.00 0.00 0.00 1.89
1526 2215 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
1527 2216 4.296056 ACTCCCTCCGTTCCATATTACTT 58.704 43.478 0.00 0.00 0.00 2.24
1528 2217 4.101119 ACTCCCTCCGTTCCATATTACTTG 59.899 45.833 0.00 0.00 0.00 3.16
1529 2218 4.035112 TCCCTCCGTTCCATATTACTTGT 58.965 43.478 0.00 0.00 0.00 3.16
1530 2219 4.100498 TCCCTCCGTTCCATATTACTTGTC 59.900 45.833 0.00 0.00 0.00 3.18
1531 2220 4.049186 CCTCCGTTCCATATTACTTGTCG 58.951 47.826 0.00 0.00 0.00 4.35
1532 2221 3.450578 TCCGTTCCATATTACTTGTCGC 58.549 45.455 0.00 0.00 0.00 5.19
1533 2222 3.131577 TCCGTTCCATATTACTTGTCGCT 59.868 43.478 0.00 0.00 0.00 4.93
1534 2223 3.869246 CCGTTCCATATTACTTGTCGCTT 59.131 43.478 0.00 0.00 0.00 4.68
1535 2224 4.260212 CCGTTCCATATTACTTGTCGCTTG 60.260 45.833 0.00 0.00 0.00 4.01
1536 2225 4.328983 CGTTCCATATTACTTGTCGCTTGT 59.671 41.667 0.00 0.00 0.00 3.16
1537 2226 5.517411 CGTTCCATATTACTTGTCGCTTGTA 59.483 40.000 0.00 0.00 0.00 2.41
1538 2227 6.507456 CGTTCCATATTACTTGTCGCTTGTAC 60.507 42.308 0.00 0.00 0.00 2.90
1539 2228 6.216801 TCCATATTACTTGTCGCTTGTACT 57.783 37.500 0.00 0.00 0.00 2.73
1540 2229 7.337480 TCCATATTACTTGTCGCTTGTACTA 57.663 36.000 0.00 0.00 0.00 1.82
1541 2230 7.774134 TCCATATTACTTGTCGCTTGTACTAA 58.226 34.615 0.00 0.00 0.00 2.24
1542 2231 8.252417 TCCATATTACTTGTCGCTTGTACTAAA 58.748 33.333 0.00 0.00 0.00 1.85
1543 2232 9.042008 CCATATTACTTGTCGCTTGTACTAAAT 57.958 33.333 0.00 0.00 0.00 1.40
1544 2233 9.849607 CATATTACTTGTCGCTTGTACTAAATG 57.150 33.333 0.00 0.00 0.00 2.32
1545 2234 9.811995 ATATTACTTGTCGCTTGTACTAAATGA 57.188 29.630 0.00 0.00 0.00 2.57
1546 2235 7.576750 TTACTTGTCGCTTGTACTAAATGAG 57.423 36.000 0.00 0.00 0.00 2.90
1547 2236 4.389077 ACTTGTCGCTTGTACTAAATGAGC 59.611 41.667 0.00 0.00 0.00 4.26
1551 2240 3.554670 GCTTGTACTAAATGAGCGACG 57.445 47.619 0.00 0.00 0.00 5.12
1552 2241 3.176708 GCTTGTACTAAATGAGCGACGA 58.823 45.455 0.00 0.00 0.00 4.20
1553 2242 3.240861 GCTTGTACTAAATGAGCGACGAG 59.759 47.826 0.00 0.00 32.39 4.18
1554 2243 4.413087 CTTGTACTAAATGAGCGACGAGT 58.587 43.478 0.00 0.00 0.00 4.18
1555 2244 5.550232 TTGTACTAAATGAGCGACGAGTA 57.450 39.130 0.00 0.00 0.00 2.59
1556 2245 5.550232 TGTACTAAATGAGCGACGAGTAA 57.450 39.130 0.00 0.00 0.00 2.24
1557 2246 6.127810 TGTACTAAATGAGCGACGAGTAAT 57.872 37.500 0.00 0.00 0.00 1.89
1558 2247 7.250445 TGTACTAAATGAGCGACGAGTAATA 57.750 36.000 0.00 0.00 0.00 0.98
1559 2248 7.868775 TGTACTAAATGAGCGACGAGTAATAT 58.131 34.615 0.00 0.00 0.00 1.28
1560 2249 7.801783 TGTACTAAATGAGCGACGAGTAATATG 59.198 37.037 0.00 0.00 0.00 1.78
1561 2250 6.150318 ACTAAATGAGCGACGAGTAATATGG 58.850 40.000 0.00 0.00 0.00 2.74
1562 2251 4.848562 AATGAGCGACGAGTAATATGGA 57.151 40.909 0.00 0.00 0.00 3.41
1563 2252 4.848562 ATGAGCGACGAGTAATATGGAA 57.151 40.909 0.00 0.00 0.00 3.53
1564 2253 3.961182 TGAGCGACGAGTAATATGGAAC 58.039 45.455 0.00 0.00 0.00 3.62
1565 2254 3.630769 TGAGCGACGAGTAATATGGAACT 59.369 43.478 0.00 0.00 0.00 3.01
1566 2255 3.966154 AGCGACGAGTAATATGGAACTG 58.034 45.455 0.00 0.00 0.00 3.16
1567 2256 3.630769 AGCGACGAGTAATATGGAACTGA 59.369 43.478 0.00 0.00 0.00 3.41
1568 2257 3.975670 GCGACGAGTAATATGGAACTGAG 59.024 47.826 0.00 0.00 0.00 3.35
1569 2258 4.537965 CGACGAGTAATATGGAACTGAGG 58.462 47.826 0.00 0.00 0.00 3.86
1570 2259 4.299978 GACGAGTAATATGGAACTGAGGC 58.700 47.826 0.00 0.00 0.00 4.70
1571 2260 3.704566 ACGAGTAATATGGAACTGAGGCA 59.295 43.478 0.00 0.00 0.00 4.75
1572 2261 4.202161 ACGAGTAATATGGAACTGAGGCAG 60.202 45.833 0.00 0.00 37.52 4.85
1574 2263 5.009710 CGAGTAATATGGAACTGAGGCAGTA 59.990 44.000 0.00 0.00 44.62 2.74
1575 2264 6.412362 AGTAATATGGAACTGAGGCAGTAG 57.588 41.667 0.00 0.00 44.62 2.57
1576 2265 3.760580 ATATGGAACTGAGGCAGTAGC 57.239 47.619 0.00 0.00 44.62 3.58
1577 2266 1.279496 ATGGAACTGAGGCAGTAGCA 58.721 50.000 0.00 0.00 44.62 3.49
1578 2267 0.321671 TGGAACTGAGGCAGTAGCAC 59.678 55.000 0.00 0.00 44.62 4.40
1579 2268 0.610687 GGAACTGAGGCAGTAGCACT 59.389 55.000 0.00 0.00 44.62 4.40
1580 2269 1.674221 GGAACTGAGGCAGTAGCACTG 60.674 57.143 10.75 10.75 44.62 3.66
1600 2289 6.734104 ACTGTAGCAGTGATGATTTCTTTC 57.266 37.500 0.53 0.00 43.63 2.62
1601 2290 5.645497 ACTGTAGCAGTGATGATTTCTTTCC 59.355 40.000 0.53 0.00 43.63 3.13
1846 2539 2.618053 GTCAAGATGGACGTCGGAAAT 58.382 47.619 9.92 0.27 0.00 2.17
1885 2578 3.747099 AATCTGTGCTAATGAACACGC 57.253 42.857 0.00 0.00 39.71 5.34
1929 2623 8.834004 AGATAAAATGTACTACCTCTGTACCA 57.166 34.615 0.00 0.00 39.42 3.25
2074 2816 0.675522 GCTGCTAGGTTTTACGCCCA 60.676 55.000 0.00 0.00 0.00 5.36
2149 2891 2.782222 GGCGCCGATCTACACCAGA 61.782 63.158 12.58 0.00 37.79 3.86
2276 3021 7.510685 AGTGCTAGGATTGGTTTCTGAGATATA 59.489 37.037 0.00 0.00 0.00 0.86
2283 3028 6.823286 TTGGTTTCTGAGATATATGTCCCA 57.177 37.500 7.37 4.44 0.00 4.37
2284 3029 6.425210 TGGTTTCTGAGATATATGTCCCAG 57.575 41.667 7.37 4.83 0.00 4.45
2285 3030 5.221722 TGGTTTCTGAGATATATGTCCCAGC 60.222 44.000 6.17 0.26 0.00 4.85
2303 3049 0.386838 GCTGTTTGCTTCAGGCTGTT 59.613 50.000 15.27 0.00 42.39 3.16
2304 3050 1.608590 GCTGTTTGCTTCAGGCTGTTA 59.391 47.619 15.27 3.15 42.39 2.41
2395 3758 6.261859 TCGCGTTCCGTATGTTTATTTAGTA 58.738 36.000 5.77 0.00 38.35 1.82
2420 3791 2.159254 TGTGAACCAACAAAGCTGCTTC 60.159 45.455 16.28 0.83 0.00 3.86
2501 4219 2.420022 GGTTGAATGTGGAGACGAATGG 59.580 50.000 0.00 0.00 0.00 3.16
2635 4354 4.872691 ACAACTCTGATCTTATTGGCTTCG 59.127 41.667 0.00 0.00 0.00 3.79
2652 4371 3.851105 GCTTCGCATGTTTATCAGCATCC 60.851 47.826 0.00 0.00 0.00 3.51
2664 4383 3.357079 GCATCCGCATAAGGGCCG 61.357 66.667 0.00 0.00 38.36 6.13
2665 4384 2.669569 CATCCGCATAAGGGCCGG 60.670 66.667 0.00 0.00 0.00 6.13
2666 4385 4.643387 ATCCGCATAAGGGCCGGC 62.643 66.667 21.18 21.18 0.00 6.13
2670 4389 2.521708 GCATAAGGGCCGGCCAAT 60.522 61.111 44.46 33.51 37.98 3.16
2671 4390 2.564721 GCATAAGGGCCGGCCAATC 61.565 63.158 44.46 28.64 37.98 2.67
2672 4391 1.151450 CATAAGGGCCGGCCAATCT 59.849 57.895 44.46 30.45 37.98 2.40
2673 4392 0.468029 CATAAGGGCCGGCCAATCTT 60.468 55.000 44.46 36.44 37.98 2.40
2674 4393 0.468029 ATAAGGGCCGGCCAATCTTG 60.468 55.000 44.46 0.00 37.98 3.02
2675 4394 1.858739 TAAGGGCCGGCCAATCTTGT 61.859 55.000 44.46 21.51 37.98 3.16
2676 4395 1.858739 AAGGGCCGGCCAATCTTGTA 61.859 55.000 44.46 0.00 37.98 2.41
2776 4495 7.225145 GCAGTATATTTACCACATTTGTCGGTA 59.775 37.037 7.51 7.51 33.61 4.02
2777 4496 9.268268 CAGTATATTTACCACATTTGTCGGTAT 57.732 33.333 10.68 4.22 34.29 2.73
2816 4535 3.681593 ACCTTATTTTGTTCTAGCGGCA 58.318 40.909 1.45 0.00 0.00 5.69
3083 5576 7.177744 ACCAAGAGCTAAGCTATCCTAAGATAC 59.822 40.741 0.00 0.00 39.88 2.24
3084 5577 7.177568 CCAAGAGCTAAGCTATCCTAAGATACA 59.822 40.741 0.00 0.00 39.88 2.29
3114 5614 8.748380 AAATGCTGCTGTAAAAGAATAGTTTC 57.252 30.769 0.00 0.00 0.00 2.78
3334 5966 1.066858 GTCTGTGGATCTTCTTGCGGA 60.067 52.381 0.00 0.00 0.00 5.54
3578 7381 4.660789 ATGCTTATTCAGGGAATTGTGC 57.339 40.909 0.00 1.40 33.95 4.57
3876 7724 8.286097 GTCATCTTTTAACTCCTGTTCTCTTTG 58.714 37.037 0.00 0.00 37.59 2.77
4084 8002 8.298854 CAAAGTATGACACTCATTTTCATCCAA 58.701 33.333 0.00 0.00 38.26 3.53
4085 8003 8.408043 AAGTATGACACTCATTTTCATCCAAA 57.592 30.769 0.00 0.00 38.26 3.28
4086 8004 8.048534 AGTATGACACTCATTTTCATCCAAAG 57.951 34.615 0.00 0.00 38.26 2.77
4087 8005 6.906157 ATGACACTCATTTTCATCCAAAGT 57.094 33.333 0.00 0.00 32.13 2.66
4089 8007 7.111247 TGACACTCATTTTCATCCAAAGTTT 57.889 32.000 0.00 0.00 0.00 2.66
4090 8008 7.555087 TGACACTCATTTTCATCCAAAGTTTT 58.445 30.769 0.00 0.00 0.00 2.43
4091 8009 8.690884 TGACACTCATTTTCATCCAAAGTTTTA 58.309 29.630 0.00 0.00 0.00 1.52
4092 8010 9.528018 GACACTCATTTTCATCCAAAGTTTTAA 57.472 29.630 0.00 0.00 0.00 1.52
4093 8011 9.883142 ACACTCATTTTCATCCAAAGTTTTAAA 57.117 25.926 0.00 0.00 0.00 1.52
4098 8016 9.956797 CATTTTCATCCAAAGTTTTAAATAGCG 57.043 29.630 0.00 0.00 0.00 4.26
4099 8017 7.575332 TTTCATCCAAAGTTTTAAATAGCGC 57.425 32.000 0.00 0.00 0.00 5.92
4100 8018 5.328691 TCATCCAAAGTTTTAAATAGCGCG 58.671 37.500 0.00 0.00 0.00 6.86
4101 8019 3.494232 TCCAAAGTTTTAAATAGCGCGC 58.506 40.909 26.66 26.66 0.00 6.86
4102 8020 3.189702 TCCAAAGTTTTAAATAGCGCGCT 59.810 39.130 38.01 38.01 0.00 5.92
4103 8021 4.392445 TCCAAAGTTTTAAATAGCGCGCTA 59.608 37.500 39.72 39.72 0.00 4.26
4104 8022 5.090083 CCAAAGTTTTAAATAGCGCGCTAA 58.910 37.500 40.90 26.03 31.73 3.09
4105 8023 5.227184 CCAAAGTTTTAAATAGCGCGCTAAG 59.773 40.000 40.90 15.74 31.73 2.18
4106 8024 3.936661 AGTTTTAAATAGCGCGCTAAGC 58.063 40.909 40.90 27.92 43.95 3.09
4118 8036 1.856012 GCTAAGCATCTTAGCGGCG 59.144 57.895 18.95 0.51 38.12 6.46
4119 8037 1.560860 GCTAAGCATCTTAGCGGCGG 61.561 60.000 18.95 0.00 38.12 6.13
4120 8038 0.032130 CTAAGCATCTTAGCGGCGGA 59.968 55.000 9.78 0.00 40.15 5.54
4121 8039 0.249322 TAAGCATCTTAGCGGCGGAC 60.249 55.000 9.78 0.00 40.15 4.79
4122 8040 2.925162 AAGCATCTTAGCGGCGGACC 62.925 60.000 9.78 0.00 40.15 4.46
4123 8041 2.815308 CATCTTAGCGGCGGACCT 59.185 61.111 9.78 0.00 0.00 3.85
4124 8042 1.300233 CATCTTAGCGGCGGACCTC 60.300 63.158 9.78 0.00 0.00 3.85
4125 8043 1.455959 ATCTTAGCGGCGGACCTCT 60.456 57.895 9.78 0.00 34.60 3.69
4126 8044 1.043673 ATCTTAGCGGCGGACCTCTT 61.044 55.000 9.78 0.00 31.87 2.85
4127 8045 1.218316 CTTAGCGGCGGACCTCTTT 59.782 57.895 9.78 0.00 31.87 2.52
4128 8046 0.806492 CTTAGCGGCGGACCTCTTTC 60.806 60.000 9.78 0.00 31.87 2.62
4129 8047 1.537814 TTAGCGGCGGACCTCTTTCA 61.538 55.000 9.78 0.00 31.87 2.69
4130 8048 1.537814 TAGCGGCGGACCTCTTTCAA 61.538 55.000 9.78 0.00 31.87 2.69
4131 8049 1.964373 GCGGCGGACCTCTTTCAAA 60.964 57.895 9.78 0.00 0.00 2.69
4132 8050 1.305930 GCGGCGGACCTCTTTCAAAT 61.306 55.000 9.78 0.00 0.00 2.32
4133 8051 0.447801 CGGCGGACCTCTTTCAAATG 59.552 55.000 0.00 0.00 0.00 2.32
4134 8052 0.171231 GGCGGACCTCTTTCAAATGC 59.829 55.000 0.00 0.00 0.00 3.56
4135 8053 1.168714 GCGGACCTCTTTCAAATGCT 58.831 50.000 0.00 0.00 0.00 3.79
4136 8054 2.356135 GCGGACCTCTTTCAAATGCTA 58.644 47.619 0.00 0.00 0.00 3.49
4137 8055 2.945668 GCGGACCTCTTTCAAATGCTAT 59.054 45.455 0.00 0.00 0.00 2.97
4138 8056 4.127171 GCGGACCTCTTTCAAATGCTATA 58.873 43.478 0.00 0.00 0.00 1.31
4139 8057 4.212214 GCGGACCTCTTTCAAATGCTATAG 59.788 45.833 0.00 0.00 0.00 1.31
4140 8058 4.212214 CGGACCTCTTTCAAATGCTATAGC 59.788 45.833 18.18 18.18 42.50 2.97
4141 8059 4.212214 GGACCTCTTTCAAATGCTATAGCG 59.788 45.833 19.55 5.67 45.83 4.26
4142 8060 4.770795 ACCTCTTTCAAATGCTATAGCGT 58.229 39.130 19.55 16.84 45.83 5.07
4143 8061 4.572389 ACCTCTTTCAAATGCTATAGCGTG 59.428 41.667 20.02 16.47 45.83 5.34
4144 8062 4.521943 CTCTTTCAAATGCTATAGCGTGC 58.478 43.478 20.02 0.00 45.83 5.34
4145 8063 4.191544 TCTTTCAAATGCTATAGCGTGCT 58.808 39.130 20.02 7.98 45.83 4.40
4146 8064 5.356426 TCTTTCAAATGCTATAGCGTGCTA 58.644 37.500 20.02 3.73 45.83 3.49
4147 8065 5.991606 TCTTTCAAATGCTATAGCGTGCTAT 59.008 36.000 20.02 17.65 45.83 2.97
4148 8066 7.151976 TCTTTCAAATGCTATAGCGTGCTATA 58.848 34.615 20.02 17.96 45.83 1.31
4154 8072 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
4155 8073 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
4177 8095 5.618561 GCTATAGCGCGCTATTTAAAATGT 58.381 37.500 46.76 28.88 39.65 2.71
4178 8096 6.077838 GCTATAGCGCGCTATTTAAAATGTT 58.922 36.000 46.76 28.22 39.65 2.71
4179 8097 6.577427 GCTATAGCGCGCTATTTAAAATGTTT 59.423 34.615 46.76 27.75 39.65 2.83
4180 8098 6.732181 ATAGCGCGCTATTTAAAATGTTTG 57.268 33.333 40.32 0.00 35.92 2.93
4181 8099 4.481463 AGCGCGCTATTTAAAATGTTTGT 58.519 34.783 35.79 0.63 0.00 2.83
4182 8100 4.920927 AGCGCGCTATTTAAAATGTTTGTT 59.079 33.333 35.79 0.18 0.00 2.83
4183 8101 5.060446 AGCGCGCTATTTAAAATGTTTGTTC 59.940 36.000 35.79 0.00 0.00 3.18
4184 8102 5.164138 GCGCGCTATTTAAAATGTTTGTTCA 60.164 36.000 26.67 0.00 0.00 3.18
4185 8103 6.453659 GCGCGCTATTTAAAATGTTTGTTCAT 60.454 34.615 26.67 0.00 0.00 2.57
4186 8104 7.444245 CGCGCTATTTAAAATGTTTGTTCATT 58.556 30.769 5.56 0.00 39.35 2.57
4187 8105 7.949428 CGCGCTATTTAAAATGTTTGTTCATTT 59.051 29.630 5.56 0.00 45.94 2.32
4188 8106 9.039500 GCGCTATTTAAAATGTTTGTTCATTTG 57.961 29.630 0.00 0.00 44.10 2.32
4196 8114 6.676237 AATGTTTGTTCATTTGTTTGGACC 57.324 33.333 0.00 0.00 34.86 4.46
4197 8115 5.152623 TGTTTGTTCATTTGTTTGGACCA 57.847 34.783 0.00 0.00 0.00 4.02
4198 8116 5.551233 TGTTTGTTCATTTGTTTGGACCAA 58.449 33.333 1.69 1.69 0.00 3.67
4199 8117 5.997746 TGTTTGTTCATTTGTTTGGACCAAA 59.002 32.000 15.89 15.89 36.34 3.28
4200 8118 6.148480 TGTTTGTTCATTTGTTTGGACCAAAG 59.852 34.615 20.14 8.25 35.45 2.77
4201 8119 5.413309 TGTTCATTTGTTTGGACCAAAGT 57.587 34.783 20.14 4.29 35.45 2.66
4202 8120 5.415221 TGTTCATTTGTTTGGACCAAAGTC 58.585 37.500 20.14 10.01 42.73 3.01
4203 8121 5.186797 TGTTCATTTGTTTGGACCAAAGTCT 59.813 36.000 20.14 2.95 43.05 3.24
4204 8122 5.514274 TCATTTGTTTGGACCAAAGTCTC 57.486 39.130 20.14 8.94 43.05 3.36
4205 8123 5.200483 TCATTTGTTTGGACCAAAGTCTCT 58.800 37.500 20.14 1.91 43.05 3.10
4206 8124 5.656416 TCATTTGTTTGGACCAAAGTCTCTT 59.344 36.000 20.14 1.05 43.05 2.85
4207 8125 6.831353 TCATTTGTTTGGACCAAAGTCTCTTA 59.169 34.615 20.14 1.24 43.05 2.10
4208 8126 6.693315 TTTGTTTGGACCAAAGTCTCTTAG 57.307 37.500 20.14 0.00 43.05 2.18
4209 8127 4.134563 TGTTTGGACCAAAGTCTCTTAGC 58.865 43.478 20.14 5.76 43.05 3.09
4210 8128 2.743636 TGGACCAAAGTCTCTTAGCG 57.256 50.000 0.00 0.00 43.05 4.26
4211 8129 1.337823 TGGACCAAAGTCTCTTAGCGC 60.338 52.381 0.00 0.00 43.05 5.92
4212 8130 1.337823 GGACCAAAGTCTCTTAGCGCA 60.338 52.381 11.47 0.00 43.05 6.09
4213 8131 2.413837 GACCAAAGTCTCTTAGCGCAA 58.586 47.619 11.47 0.50 40.10 4.85
4214 8132 2.413453 GACCAAAGTCTCTTAGCGCAAG 59.587 50.000 11.47 11.67 40.10 4.01
4215 8133 2.037251 ACCAAAGTCTCTTAGCGCAAGA 59.963 45.455 11.47 15.40 41.10 3.02
4216 8134 2.413453 CCAAAGTCTCTTAGCGCAAGAC 59.587 50.000 11.47 16.26 38.39 3.01
4217 8135 2.371910 AAGTCTCTTAGCGCAAGACC 57.628 50.000 21.13 13.52 40.21 3.85
4218 8136 1.551452 AGTCTCTTAGCGCAAGACCT 58.449 50.000 21.13 14.93 40.21 3.85
4219 8137 1.896465 AGTCTCTTAGCGCAAGACCTT 59.104 47.619 21.13 7.87 40.21 3.50
4220 8138 2.300437 AGTCTCTTAGCGCAAGACCTTT 59.700 45.455 21.13 7.34 40.21 3.11
4221 8139 3.067833 GTCTCTTAGCGCAAGACCTTTT 58.932 45.455 11.47 0.00 38.39 2.27
4222 8140 3.067106 TCTCTTAGCGCAAGACCTTTTG 58.933 45.455 11.47 4.34 38.39 2.44
4223 8141 2.808543 CTCTTAGCGCAAGACCTTTTGT 59.191 45.455 11.47 0.00 38.39 2.83
4224 8142 3.994392 CTCTTAGCGCAAGACCTTTTGTA 59.006 43.478 11.47 0.00 38.39 2.41
4225 8143 4.382291 TCTTAGCGCAAGACCTTTTGTAA 58.618 39.130 11.47 0.00 38.39 2.41
4226 8144 4.817464 TCTTAGCGCAAGACCTTTTGTAAA 59.183 37.500 11.47 0.00 38.39 2.01
4227 8145 3.349488 AGCGCAAGACCTTTTGTAAAC 57.651 42.857 11.47 0.00 43.02 2.01
4228 8146 2.041244 GCGCAAGACCTTTTGTAAACG 58.959 47.619 0.30 0.00 43.02 3.60
4229 8147 2.041244 CGCAAGACCTTTTGTAAACGC 58.959 47.619 0.00 0.00 43.02 4.84
4230 8148 2.286772 CGCAAGACCTTTTGTAAACGCT 60.287 45.455 0.00 0.00 43.02 5.07
4231 8149 3.059461 CGCAAGACCTTTTGTAAACGCTA 60.059 43.478 0.00 0.00 43.02 4.26
4232 8150 4.378046 CGCAAGACCTTTTGTAAACGCTAT 60.378 41.667 0.00 0.00 43.02 2.97
4233 8151 5.163933 CGCAAGACCTTTTGTAAACGCTATA 60.164 40.000 0.00 0.00 43.02 1.31
4234 8152 6.248631 GCAAGACCTTTTGTAAACGCTATAG 58.751 40.000 0.00 0.00 0.00 1.31
4235 8153 6.248631 CAAGACCTTTTGTAAACGCTATAGC 58.751 40.000 15.09 15.09 37.78 2.97
4249 8167 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
4250 8168 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
4272 8190 5.928153 GCTATAGCGGGCTATTTAAAACAG 58.072 41.667 17.49 8.76 39.65 3.16
4274 8192 5.751243 ATAGCGGGCTATTTAAAACAGTG 57.249 39.130 7.36 0.00 35.92 3.66
4276 8194 3.824443 AGCGGGCTATTTAAAACAGTGTT 59.176 39.130 1.64 1.64 0.00 3.32
4320 8254 5.473066 AAAAACTGTGGCAAATATCAGCT 57.527 34.783 2.30 0.00 0.00 4.24
4703 9248 5.389859 TTGTTTCATGGGCTTGTCTTATG 57.610 39.130 0.00 0.00 0.00 1.90
5007 10182 2.978018 GCTGTTTCGCCTTTCCCCG 61.978 63.158 0.00 0.00 0.00 5.73
5009 10184 1.574702 CTGTTTCGCCTTTCCCCGTC 61.575 60.000 0.00 0.00 0.00 4.79
5302 10532 4.193826 ACTCGAGGTACGTAGTTGTAGA 57.806 45.455 18.41 0.00 37.78 2.59
5371 10605 1.942657 CAATGTTGGCATCGAGTAGGG 59.057 52.381 0.00 0.00 33.50 3.53
5411 10645 8.868522 TCATAGAACAACAATCTGAATTTCCT 57.131 30.769 0.00 0.00 0.00 3.36
5495 10756 7.554476 ACTCTTTAAGCTCTGTTCTGAAAACTT 59.446 33.333 0.00 0.00 0.00 2.66
5910 12229 7.222031 CAGGATTATCAAAATGCATCAGTGTTG 59.778 37.037 0.00 0.36 0.00 3.33
6246 12589 1.134491 GGTCTTCCATTTCGTCGGGAT 60.134 52.381 0.00 0.00 0.00 3.85
6256 12599 4.413495 TTTCGTCGGGATGAATTTTGTC 57.587 40.909 4.30 0.00 36.35 3.18
6257 12600 3.046968 TCGTCGGGATGAATTTTGTCA 57.953 42.857 0.00 0.00 0.00 3.58
6299 12785 9.000486 CATACTATGTGTCGATTAGAACTCCTA 58.000 37.037 0.00 0.00 0.00 2.94
6301 12787 7.705214 ACTATGTGTCGATTAGAACTCCTAAC 58.295 38.462 0.00 0.00 39.93 2.34
6302 12788 5.320549 TGTGTCGATTAGAACTCCTAACC 57.679 43.478 0.00 0.00 39.93 2.85
6454 13002 2.053627 CAATCTGGTGCGTTGCTTTTC 58.946 47.619 0.00 0.00 0.00 2.29
6563 13452 1.180456 TCGGAAAGTACTCGGTGGCA 61.180 55.000 0.00 0.00 0.00 4.92
6697 13588 2.932187 GCATTTCTGGAATGTGGCAACC 60.932 50.000 10.26 0.00 45.62 3.77
6716 13609 1.264288 CCAGAGCAAGTTTTCACCGTC 59.736 52.381 0.00 0.00 0.00 4.79
6910 13810 1.962100 TGTTCATGAAGGTGCATGCAA 59.038 42.857 24.58 6.73 44.08 4.08
6920 13820 1.380246 TGCATGCAATGGGAGGGTC 60.380 57.895 20.30 0.00 46.86 4.46
6953 13853 0.040157 TCGTTGCTGCTTTCACATGC 60.040 50.000 0.00 0.00 0.00 4.06
6955 13855 1.134226 GTTGCTGCTTTCACATGCAC 58.866 50.000 0.00 0.00 35.20 4.57
7024 13924 1.402259 CTGCGTATTCCTCACTCTCGT 59.598 52.381 0.00 0.00 0.00 4.18
7097 13997 6.000840 GGTAAGGAATCCATCTTCCATCTTC 58.999 44.000 0.61 0.00 46.02 2.87
7098 13998 4.720775 AGGAATCCATCTTCCATCTTCC 57.279 45.455 0.61 0.00 46.02 3.46
7099 13999 4.050037 AGGAATCCATCTTCCATCTTCCA 58.950 43.478 0.61 0.00 46.02 3.53
7100 14000 4.668812 AGGAATCCATCTTCCATCTTCCAT 59.331 41.667 0.61 0.00 46.02 3.41
7101 14001 5.008980 GGAATCCATCTTCCATCTTCCATC 58.991 45.833 0.00 0.00 43.56 3.51
7102 14002 5.222089 GGAATCCATCTTCCATCTTCCATCT 60.222 44.000 0.00 0.00 43.56 2.90
7103 14003 5.926580 ATCCATCTTCCATCTTCCATCTT 57.073 39.130 0.00 0.00 0.00 2.40
7104 14004 7.398289 AATCCATCTTCCATCTTCCATCTTA 57.602 36.000 0.00 0.00 0.00 2.10
7243 14171 1.938577 GCTGAAGTGATCATCGTGCAT 59.061 47.619 0.00 0.00 37.44 3.96
7302 14258 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
7338 14300 5.220970 GCTGAACTTTAAATTATGGCGCCTA 60.221 40.000 29.70 14.84 0.00 3.93
7444 14407 4.375272 CTGCATCCTGTTAGTATGTGGAG 58.625 47.826 0.00 0.00 0.00 3.86
7457 14420 4.648626 TGGAGGTGTGGCAGCAGC 62.649 66.667 10.06 10.06 41.10 5.25
7542 14514 6.817140 AGACCTTATTGTGTTCCGTTATCTTC 59.183 38.462 0.00 0.00 0.00 2.87
7556 14528 5.590259 CCGTTATCTTCTGATCCATTTTGGT 59.410 40.000 0.00 0.00 39.03 3.67
7570 14542 4.083908 CCATTTTGGTTCGCATGGAAAAAG 60.084 41.667 0.00 0.00 38.88 2.27
7571 14543 3.810310 TTTGGTTCGCATGGAAAAAGT 57.190 38.095 0.00 0.00 36.14 2.66
7572 14544 3.810310 TTGGTTCGCATGGAAAAAGTT 57.190 38.095 0.00 0.00 36.14 2.66
7573 14545 3.363341 TGGTTCGCATGGAAAAAGTTC 57.637 42.857 0.00 0.00 36.14 3.01
7574 14546 2.690497 TGGTTCGCATGGAAAAAGTTCA 59.310 40.909 0.00 0.00 36.14 3.18
7575 14547 3.243367 TGGTTCGCATGGAAAAAGTTCAG 60.243 43.478 0.00 0.00 36.14 3.02
7577 14549 3.896648 TCGCATGGAAAAAGTTCAGAC 57.103 42.857 0.00 0.00 35.25 3.51
7578 14550 2.552315 TCGCATGGAAAAAGTTCAGACC 59.448 45.455 0.00 0.00 35.25 3.85
7623 18936 1.202794 TGCATGGATCACGCACCATAT 60.203 47.619 0.00 0.00 43.89 1.78
7635 18948 5.009110 TCACGCACCATATTTTGAAGTTCAA 59.991 36.000 14.35 14.35 34.03 2.69
7638 18951 5.220265 CGCACCATATTTTGAAGTTCAATGC 60.220 40.000 18.69 19.78 36.11 3.56
7655 18968 4.092821 TCAATGCTTTTATCCGAGAACACG 59.907 41.667 0.00 0.00 0.00 4.49
7685 19020 2.550830 AAAAGAGCTTCTCTCCGCAA 57.449 45.000 0.00 0.00 40.28 4.85
8032 19403 6.186957 TCCATTAAAATTTGAGCTGCTCCTA 58.813 36.000 25.61 14.31 0.00 2.94
8071 19442 0.319297 CCACTTTGGCTGCAGCTTTC 60.319 55.000 35.82 21.24 41.70 2.62
8105 19476 3.119101 GCATCCTCGTAAGACCTTTCTCA 60.119 47.826 0.00 0.00 45.01 3.27
8134 19505 3.768633 CGAAGCCAGCAGAGGTTAT 57.231 52.632 0.00 0.00 0.00 1.89
8135 19506 1.576356 CGAAGCCAGCAGAGGTTATC 58.424 55.000 0.00 0.00 0.00 1.75
8136 19507 1.808133 CGAAGCCAGCAGAGGTTATCC 60.808 57.143 0.00 0.00 0.00 2.59
8137 19508 1.210478 GAAGCCAGCAGAGGTTATCCA 59.790 52.381 0.00 0.00 35.89 3.41
8138 19509 1.516110 AGCCAGCAGAGGTTATCCAT 58.484 50.000 0.00 0.00 35.89 3.41
8139 19510 1.419387 AGCCAGCAGAGGTTATCCATC 59.581 52.381 0.00 0.00 35.89 3.51
8140 19511 1.544314 GCCAGCAGAGGTTATCCATCC 60.544 57.143 0.00 0.00 35.89 3.51
8141 19512 2.053244 CCAGCAGAGGTTATCCATCCT 58.947 52.381 0.00 0.00 36.70 3.24
8153 19524 6.541111 GTTATCCATCCTCGTTTGATAACC 57.459 41.667 8.71 0.00 40.49 2.85
8230 19601 2.200792 TGTTGTTGTTGCCACATTCG 57.799 45.000 0.00 0.00 31.06 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.973388 CCATTAACATTATTTGCTCTTTCCGAA 59.027 33.333 0.00 0.00 0.00 4.30
122 123 0.026803 GATTTGACGATGCCGACTGC 59.973 55.000 0.00 0.00 39.50 4.40
126 127 0.179084 GGAGGATTTGACGATGCCGA 60.179 55.000 0.00 0.00 39.50 5.54
134 135 4.157840 GTGTATGTTTGGGGAGGATTTGAC 59.842 45.833 0.00 0.00 0.00 3.18
146 147 1.739466 AGCGCATCTGTGTATGTTTGG 59.261 47.619 11.47 0.00 0.00 3.28
156 157 2.182791 CCGACTGAGCGCATCTGT 59.817 61.111 11.47 14.07 42.27 3.41
161 162 4.357947 GGTCACCGACTGAGCGCA 62.358 66.667 11.47 0.00 37.64 6.09
168 169 0.896019 CTCCTGTCTGGTCACCGACT 60.896 60.000 16.52 0.00 37.07 4.18
173 174 3.556004 CCTTCTTTCTCCTGTCTGGTCAC 60.556 52.174 0.00 0.00 37.07 3.67
184 185 7.197017 GTCACTTTTTCTTTCCTTCTTTCTCC 58.803 38.462 0.00 0.00 0.00 3.71
195 196 5.912892 TCCAATTGGGTCACTTTTTCTTTC 58.087 37.500 24.29 0.00 38.11 2.62
214 216 4.946160 AAAGATGGTATGAGGGTTCCAA 57.054 40.909 0.00 0.00 33.55 3.53
215 217 6.239487 CGTATAAAGATGGTATGAGGGTTCCA 60.239 42.308 0.00 0.00 0.00 3.53
226 228 2.297033 GCCCGGACGTATAAAGATGGTA 59.703 50.000 0.73 0.00 0.00 3.25
234 236 2.724520 GGAGAGCCCGGACGTATAA 58.275 57.895 0.73 0.00 0.00 0.98
251 253 1.361668 CTCAATGTGAGGGTTCGCGG 61.362 60.000 6.13 0.00 40.71 6.46
295 297 2.098842 GAACAGATGCATCCGCGAGC 62.099 60.000 23.06 9.70 42.97 5.03
307 309 0.615331 ACATGGCGGACTGAACAGAT 59.385 50.000 8.87 0.00 0.00 2.90
311 313 0.535335 TCCTACATGGCGGACTGAAC 59.465 55.000 0.00 0.00 35.26 3.18
321 323 2.397413 GATGGGCCGGTCCTACATGG 62.397 65.000 28.64 0.00 34.39 3.66
328 330 2.122989 TCTAGGATGGGCCGGTCC 60.123 66.667 21.35 21.35 43.43 4.46
329 331 2.508751 GGTCTAGGATGGGCCGGTC 61.509 68.421 1.90 0.00 43.43 4.79
340 342 5.491323 AGAAAGAGAAAAGGTGGTCTAGG 57.509 43.478 0.00 0.00 0.00 3.02
342 344 9.503399 GAATAAAGAAAGAGAAAAGGTGGTCTA 57.497 33.333 0.00 0.00 0.00 2.59
344 346 8.166422 TGAATAAAGAAAGAGAAAAGGTGGTC 57.834 34.615 0.00 0.00 0.00 4.02
405 407 1.896220 ATGTTCGGTCACTTGCATGT 58.104 45.000 0.00 0.00 0.00 3.21
439 441 3.369471 CGTTCATACATCCCCACTTCACT 60.369 47.826 0.00 0.00 0.00 3.41
441 443 2.835156 TCGTTCATACATCCCCACTTCA 59.165 45.455 0.00 0.00 0.00 3.02
470 472 2.406130 CGTGTCCGTTTTAAGCACCTA 58.594 47.619 0.00 0.00 0.00 3.08
471 473 1.223187 CGTGTCCGTTTTAAGCACCT 58.777 50.000 0.00 0.00 0.00 4.00
515 517 1.093496 CCGACCCCCTAAACATTCGC 61.093 60.000 0.00 0.00 0.00 4.70
516 518 0.538118 TCCGACCCCCTAAACATTCG 59.462 55.000 0.00 0.00 0.00 3.34
518 520 1.665137 AGTCCGACCCCCTAAACATT 58.335 50.000 0.00 0.00 0.00 2.71
557 559 8.740906 CGAAAGGAGGAATACTATATAAGAGCA 58.259 37.037 0.00 0.00 0.00 4.26
558 560 8.741841 ACGAAAGGAGGAATACTATATAAGAGC 58.258 37.037 0.00 0.00 0.00 4.09
560 562 9.584008 ACACGAAAGGAGGAATACTATATAAGA 57.416 33.333 0.00 0.00 0.00 2.10
561 563 9.627395 CACACGAAAGGAGGAATACTATATAAG 57.373 37.037 0.00 0.00 0.00 1.73
562 564 8.582437 CCACACGAAAGGAGGAATACTATATAA 58.418 37.037 0.00 0.00 0.00 0.98
563 565 7.946219 TCCACACGAAAGGAGGAATACTATATA 59.054 37.037 0.00 0.00 0.00 0.86
564 566 6.781014 TCCACACGAAAGGAGGAATACTATAT 59.219 38.462 0.00 0.00 0.00 0.86
565 567 6.131264 TCCACACGAAAGGAGGAATACTATA 58.869 40.000 0.00 0.00 0.00 1.31
566 568 4.960469 TCCACACGAAAGGAGGAATACTAT 59.040 41.667 0.00 0.00 0.00 2.12
567 569 4.346730 TCCACACGAAAGGAGGAATACTA 58.653 43.478 0.00 0.00 0.00 1.82
568 570 3.170717 TCCACACGAAAGGAGGAATACT 58.829 45.455 0.00 0.00 0.00 2.12
569 571 3.604875 TCCACACGAAAGGAGGAATAC 57.395 47.619 0.00 0.00 0.00 1.89
570 572 4.837093 ATTCCACACGAAAGGAGGAATA 57.163 40.909 0.00 0.00 43.44 1.75
571 573 3.721087 ATTCCACACGAAAGGAGGAAT 57.279 42.857 0.00 0.00 41.79 3.01
572 574 4.837093 ATATTCCACACGAAAGGAGGAA 57.163 40.909 0.00 0.00 41.34 3.36
573 575 7.507956 TCTTATATATTCCACACGAAAGGAGGA 59.492 37.037 0.00 0.00 34.91 3.71
574 576 7.599245 GTCTTATATATTCCACACGAAAGGAGG 59.401 40.741 0.00 0.00 34.91 4.30
575 577 7.326305 CGTCTTATATATTCCACACGAAAGGAG 59.674 40.741 0.00 0.00 34.91 3.69
576 578 7.143340 CGTCTTATATATTCCACACGAAAGGA 58.857 38.462 0.00 0.00 33.08 3.36
577 579 6.128902 GCGTCTTATATATTCCACACGAAAGG 60.129 42.308 0.00 0.00 33.08 3.11
578 580 6.641314 AGCGTCTTATATATTCCACACGAAAG 59.359 38.462 0.00 0.00 33.08 2.62
579 581 6.509656 AGCGTCTTATATATTCCACACGAAA 58.490 36.000 0.00 0.00 33.08 3.46
580 582 6.080648 AGCGTCTTATATATTCCACACGAA 57.919 37.500 0.00 0.00 34.14 3.85
581 583 5.700722 AGCGTCTTATATATTCCACACGA 57.299 39.130 0.00 0.00 0.00 4.35
582 584 6.764877 AAAGCGTCTTATATATTCCACACG 57.235 37.500 0.00 0.00 0.00 4.49
583 585 7.281484 CGAAAAGCGTCTTATATATTCCACAC 58.719 38.462 0.00 0.00 34.64 3.82
584 586 6.422701 CCGAAAAGCGTCTTATATATTCCACA 59.577 38.462 0.00 0.00 38.67 4.17
585 587 6.423001 ACCGAAAAGCGTCTTATATATTCCAC 59.577 38.462 0.00 0.00 38.67 4.02
586 588 6.518493 ACCGAAAAGCGTCTTATATATTCCA 58.482 36.000 0.00 0.00 38.67 3.53
587 589 7.596248 TGTACCGAAAAGCGTCTTATATATTCC 59.404 37.037 0.00 0.00 38.67 3.01
588 590 8.511465 TGTACCGAAAAGCGTCTTATATATTC 57.489 34.615 0.00 0.00 38.67 1.75
589 591 8.876275 TTGTACCGAAAAGCGTCTTATATATT 57.124 30.769 0.00 0.00 38.67 1.28
590 592 8.139989 ACTTGTACCGAAAAGCGTCTTATATAT 58.860 33.333 0.00 0.00 38.67 0.86
591 593 7.483307 ACTTGTACCGAAAAGCGTCTTATATA 58.517 34.615 0.00 0.00 38.67 0.86
592 594 6.335777 ACTTGTACCGAAAAGCGTCTTATAT 58.664 36.000 0.00 0.00 38.67 0.86
593 595 5.713025 ACTTGTACCGAAAAGCGTCTTATA 58.287 37.500 0.00 0.00 38.67 0.98
594 596 4.563061 ACTTGTACCGAAAAGCGTCTTAT 58.437 39.130 0.00 0.00 38.67 1.73
595 597 3.981211 ACTTGTACCGAAAAGCGTCTTA 58.019 40.909 0.00 0.00 38.67 2.10
596 598 2.830104 ACTTGTACCGAAAAGCGTCTT 58.170 42.857 0.00 0.00 38.67 3.01
597 599 2.521105 ACTTGTACCGAAAAGCGTCT 57.479 45.000 0.00 0.00 38.67 4.18
598 600 4.386652 TCAATACTTGTACCGAAAAGCGTC 59.613 41.667 0.00 0.00 38.67 5.19
599 601 4.309099 TCAATACTTGTACCGAAAAGCGT 58.691 39.130 0.00 0.00 38.67 5.07
600 602 4.914312 TCAATACTTGTACCGAAAAGCG 57.086 40.909 0.00 0.00 40.47 4.68
601 603 5.388111 GGTTCAATACTTGTACCGAAAAGC 58.612 41.667 0.76 0.00 40.51 3.51
639 641 6.825610 TGGCTTTGATGGTTCAATACTTTTT 58.174 32.000 0.00 0.00 41.38 1.94
640 642 6.418057 TGGCTTTGATGGTTCAATACTTTT 57.582 33.333 0.00 0.00 41.38 2.27
641 643 6.223120 GTTGGCTTTGATGGTTCAATACTTT 58.777 36.000 0.00 0.00 41.38 2.66
642 644 5.564651 CGTTGGCTTTGATGGTTCAATACTT 60.565 40.000 0.00 0.00 41.38 2.24
643 645 4.082787 CGTTGGCTTTGATGGTTCAATACT 60.083 41.667 0.00 0.00 41.38 2.12
644 646 4.165779 CGTTGGCTTTGATGGTTCAATAC 58.834 43.478 0.00 0.00 41.38 1.89
645 647 3.823873 ACGTTGGCTTTGATGGTTCAATA 59.176 39.130 0.00 0.00 41.38 1.90
646 648 2.627699 ACGTTGGCTTTGATGGTTCAAT 59.372 40.909 0.00 0.00 41.38 2.57
647 649 2.028130 ACGTTGGCTTTGATGGTTCAA 58.972 42.857 0.00 0.00 40.09 2.69
648 650 1.336440 CACGTTGGCTTTGATGGTTCA 59.664 47.619 0.00 0.00 0.00 3.18
649 651 1.336755 ACACGTTGGCTTTGATGGTTC 59.663 47.619 0.00 0.00 0.00 3.62
650 652 1.398692 ACACGTTGGCTTTGATGGTT 58.601 45.000 0.00 0.00 0.00 3.67
651 653 1.398692 AACACGTTGGCTTTGATGGT 58.601 45.000 0.00 0.00 0.00 3.55
652 654 2.507339 AAACACGTTGGCTTTGATGG 57.493 45.000 0.00 0.00 0.00 3.51
662 664 2.032924 GGTTGGGAGAGAAAACACGTTG 59.967 50.000 0.00 0.00 0.00 4.10
773 778 2.743928 GACAGCAGAAGCCACGGG 60.744 66.667 0.00 0.00 43.56 5.28
774 779 2.031012 TGACAGCAGAAGCCACGG 59.969 61.111 0.00 0.00 43.56 4.94
776 781 1.287730 CTCGTGACAGCAGAAGCCAC 61.288 60.000 0.00 0.00 43.56 5.01
777 782 1.005748 CTCGTGACAGCAGAAGCCA 60.006 57.895 0.00 0.00 43.56 4.75
779 784 0.598680 ACACTCGTGACAGCAGAAGC 60.599 55.000 3.74 0.00 42.56 3.86
780 785 1.269257 TGACACTCGTGACAGCAGAAG 60.269 52.381 3.74 0.00 32.09 2.85
781 786 0.744281 TGACACTCGTGACAGCAGAA 59.256 50.000 3.74 0.00 32.09 3.02
782 787 0.312102 CTGACACTCGTGACAGCAGA 59.688 55.000 14.49 0.00 43.70 4.26
783 788 2.806577 CTGACACTCGTGACAGCAG 58.193 57.895 14.49 7.67 43.70 4.24
890 895 2.284995 GAGAGAGTGGGGTGGGCT 60.285 66.667 0.00 0.00 0.00 5.19
891 896 3.403558 GGAGAGAGTGGGGTGGGC 61.404 72.222 0.00 0.00 0.00 5.36
900 905 1.208844 TCTGGAGTCGGGGAGAGAGT 61.209 60.000 0.00 0.00 0.00 3.24
930 1283 4.821589 CGGAGCCAGGCGAGGAAC 62.822 72.222 5.55 0.00 0.00 3.62
954 1315 3.654020 GGCGATGAAGATGGCGGC 61.654 66.667 0.00 0.00 41.85 6.53
1373 1814 3.550678 CCGTGCTACTTAAGAAATCGTCC 59.449 47.826 10.09 0.00 0.00 4.79
1392 2058 2.993264 AATCACGTCCCGTCCCGT 60.993 61.111 0.00 0.00 38.32 5.28
1393 2059 2.202703 GAATCACGTCCCGTCCCG 60.203 66.667 0.00 0.00 38.32 5.14
1395 2061 1.359459 GCAAGAATCACGTCCCGTCC 61.359 60.000 0.00 0.00 38.32 4.79
1396 2062 0.389948 AGCAAGAATCACGTCCCGTC 60.390 55.000 0.00 0.00 38.32 4.79
1467 2133 3.136763 CACTGATCTGCAACAAGACTGT 58.863 45.455 0.00 0.00 37.39 3.55
1474 2140 4.392047 AGAAATGTCACTGATCTGCAACA 58.608 39.130 9.19 9.19 0.00 3.33
1510 2199 3.489785 GCGACAAGTAATATGGAACGGAG 59.510 47.826 0.00 0.00 0.00 4.63
1511 2200 3.131577 AGCGACAAGTAATATGGAACGGA 59.868 43.478 0.00 0.00 0.00 4.69
1512 2201 3.454375 AGCGACAAGTAATATGGAACGG 58.546 45.455 0.00 0.00 0.00 4.44
1513 2202 4.328983 ACAAGCGACAAGTAATATGGAACG 59.671 41.667 0.00 0.00 0.00 3.95
1514 2203 5.796350 ACAAGCGACAAGTAATATGGAAC 57.204 39.130 0.00 0.00 0.00 3.62
1515 2204 6.636705 AGTACAAGCGACAAGTAATATGGAA 58.363 36.000 0.00 0.00 0.00 3.53
1516 2205 6.216801 AGTACAAGCGACAAGTAATATGGA 57.783 37.500 0.00 0.00 0.00 3.41
1517 2206 7.997107 TTAGTACAAGCGACAAGTAATATGG 57.003 36.000 0.00 0.00 0.00 2.74
1518 2207 9.849607 CATTTAGTACAAGCGACAAGTAATATG 57.150 33.333 0.00 0.00 0.00 1.78
1519 2208 9.811995 TCATTTAGTACAAGCGACAAGTAATAT 57.188 29.630 0.00 0.00 0.00 1.28
1520 2209 9.297586 CTCATTTAGTACAAGCGACAAGTAATA 57.702 33.333 0.00 0.00 0.00 0.98
1521 2210 7.201530 GCTCATTTAGTACAAGCGACAAGTAAT 60.202 37.037 0.00 0.00 0.00 1.89
1522 2211 6.090358 GCTCATTTAGTACAAGCGACAAGTAA 59.910 38.462 0.00 0.00 0.00 2.24
1523 2212 5.575606 GCTCATTTAGTACAAGCGACAAGTA 59.424 40.000 0.00 0.00 0.00 2.24
1524 2213 4.389077 GCTCATTTAGTACAAGCGACAAGT 59.611 41.667 0.00 0.00 0.00 3.16
1525 2214 4.886971 GCTCATTTAGTACAAGCGACAAG 58.113 43.478 0.00 0.00 0.00 3.16
1526 2215 4.921470 GCTCATTTAGTACAAGCGACAA 57.079 40.909 0.00 0.00 0.00 3.18
1531 2220 3.176708 TCGTCGCTCATTTAGTACAAGC 58.823 45.455 0.00 0.00 0.00 4.01
1532 2221 4.413087 ACTCGTCGCTCATTTAGTACAAG 58.587 43.478 0.00 0.00 0.00 3.16
1533 2222 4.430137 ACTCGTCGCTCATTTAGTACAA 57.570 40.909 0.00 0.00 0.00 2.41
1534 2223 5.550232 TTACTCGTCGCTCATTTAGTACA 57.450 39.130 0.00 0.00 0.00 2.90
1535 2224 7.270793 CCATATTACTCGTCGCTCATTTAGTAC 59.729 40.741 0.00 0.00 0.00 2.73
1536 2225 7.173735 TCCATATTACTCGTCGCTCATTTAGTA 59.826 37.037 0.00 0.00 0.00 1.82
1537 2226 6.016527 TCCATATTACTCGTCGCTCATTTAGT 60.017 38.462 0.00 0.00 0.00 2.24
1538 2227 6.379386 TCCATATTACTCGTCGCTCATTTAG 58.621 40.000 0.00 0.00 0.00 1.85
1539 2228 6.321848 TCCATATTACTCGTCGCTCATTTA 57.678 37.500 0.00 0.00 0.00 1.40
1540 2229 5.196341 TCCATATTACTCGTCGCTCATTT 57.804 39.130 0.00 0.00 0.00 2.32
1541 2230 4.848562 TCCATATTACTCGTCGCTCATT 57.151 40.909 0.00 0.00 0.00 2.57
1542 2231 4.278669 AGTTCCATATTACTCGTCGCTCAT 59.721 41.667 0.00 0.00 0.00 2.90
1543 2232 3.630769 AGTTCCATATTACTCGTCGCTCA 59.369 43.478 0.00 0.00 0.00 4.26
1544 2233 3.975670 CAGTTCCATATTACTCGTCGCTC 59.024 47.826 0.00 0.00 0.00 5.03
1545 2234 3.630769 TCAGTTCCATATTACTCGTCGCT 59.369 43.478 0.00 0.00 0.00 4.93
1546 2235 3.961182 TCAGTTCCATATTACTCGTCGC 58.039 45.455 0.00 0.00 0.00 5.19
1547 2236 4.537965 CCTCAGTTCCATATTACTCGTCG 58.462 47.826 0.00 0.00 0.00 5.12
1548 2237 4.202121 TGCCTCAGTTCCATATTACTCGTC 60.202 45.833 0.00 0.00 0.00 4.20
1549 2238 3.704566 TGCCTCAGTTCCATATTACTCGT 59.295 43.478 0.00 0.00 0.00 4.18
1550 2239 4.202161 ACTGCCTCAGTTCCATATTACTCG 60.202 45.833 0.00 0.00 42.59 4.18
1551 2240 5.283457 ACTGCCTCAGTTCCATATTACTC 57.717 43.478 0.00 0.00 42.59 2.59
1552 2241 5.221541 GCTACTGCCTCAGTTCCATATTACT 60.222 44.000 4.70 0.00 42.59 2.24
1553 2242 4.991687 GCTACTGCCTCAGTTCCATATTAC 59.008 45.833 4.70 0.00 42.59 1.89
1554 2243 4.653801 TGCTACTGCCTCAGTTCCATATTA 59.346 41.667 4.70 0.00 42.59 0.98
1555 2244 3.455910 TGCTACTGCCTCAGTTCCATATT 59.544 43.478 4.70 0.00 42.59 1.28
1556 2245 3.041211 TGCTACTGCCTCAGTTCCATAT 58.959 45.455 4.70 0.00 42.59 1.78
1557 2246 2.168521 GTGCTACTGCCTCAGTTCCATA 59.831 50.000 4.70 0.00 42.59 2.74
1558 2247 1.065854 GTGCTACTGCCTCAGTTCCAT 60.066 52.381 4.70 0.00 42.59 3.41
1559 2248 0.321671 GTGCTACTGCCTCAGTTCCA 59.678 55.000 4.70 0.82 42.59 3.53
1560 2249 0.610687 AGTGCTACTGCCTCAGTTCC 59.389 55.000 4.70 0.00 42.59 3.62
1561 2250 1.719600 CAGTGCTACTGCCTCAGTTC 58.280 55.000 4.70 0.00 42.59 3.01
1562 2251 3.923354 CAGTGCTACTGCCTCAGTT 57.077 52.632 4.70 0.00 42.59 3.16
1577 2266 5.645497 GGAAAGAAATCATCACTGCTACAGT 59.355 40.000 0.00 0.00 46.51 3.55
1578 2267 5.645067 TGGAAAGAAATCATCACTGCTACAG 59.355 40.000 0.00 0.00 37.52 2.74
1579 2268 5.559770 TGGAAAGAAATCATCACTGCTACA 58.440 37.500 0.00 0.00 0.00 2.74
1580 2269 6.500684 TTGGAAAGAAATCATCACTGCTAC 57.499 37.500 0.00 0.00 0.00 3.58
1581 2270 7.707624 AATTGGAAAGAAATCATCACTGCTA 57.292 32.000 0.00 0.00 0.00 3.49
1582 2271 6.600882 AATTGGAAAGAAATCATCACTGCT 57.399 33.333 0.00 0.00 0.00 4.24
1583 2272 6.869913 TCAAATTGGAAAGAAATCATCACTGC 59.130 34.615 0.00 0.00 0.00 4.40
1584 2273 8.869897 CATCAAATTGGAAAGAAATCATCACTG 58.130 33.333 0.00 0.00 0.00 3.66
1585 2274 8.038944 CCATCAAATTGGAAAGAAATCATCACT 58.961 33.333 0.00 0.00 39.25 3.41
1586 2275 8.036575 TCCATCAAATTGGAAAGAAATCATCAC 58.963 33.333 0.00 0.00 42.82 3.06
1587 2276 8.136563 TCCATCAAATTGGAAAGAAATCATCA 57.863 30.769 0.00 0.00 42.82 3.07
1599 2288 6.575267 CATACTGCAATTCCATCAAATTGGA 58.425 36.000 10.39 7.26 43.65 3.53
1600 2289 5.235616 GCATACTGCAATTCCATCAAATTGG 59.764 40.000 10.39 0.00 43.65 3.16
1601 2290 6.281848 GCATACTGCAATTCCATCAAATTG 57.718 37.500 5.25 5.25 45.36 2.32
1846 2539 2.435120 TACCCTGAGCAGTGTCGGGA 62.435 60.000 17.37 1.75 44.92 5.14
1855 2548 3.861341 GCACAGATTACCCTGAGCA 57.139 52.632 8.11 0.00 45.72 4.26
1973 2667 9.716556 ACTCCCTCTCTGTAAAGAAATATAAGA 57.283 33.333 0.00 0.00 0.00 2.10
1977 2671 9.495382 AAGTACTCCCTCTCTGTAAAGAAATAT 57.505 33.333 0.00 0.00 0.00 1.28
1978 2672 8.896722 AAGTACTCCCTCTCTGTAAAGAAATA 57.103 34.615 0.00 0.00 0.00 1.40
1979 2673 7.800300 AAGTACTCCCTCTCTGTAAAGAAAT 57.200 36.000 0.00 0.00 0.00 2.17
1980 2674 7.949006 AGTAAGTACTCCCTCTCTGTAAAGAAA 59.051 37.037 0.00 0.00 0.00 2.52
2074 2816 3.181447 CCATTCTGGACAGCATACTCCAT 60.181 47.826 0.00 0.00 40.96 3.41
2142 2884 0.818040 GGCTGGAACGTTTCTGGTGT 60.818 55.000 14.54 0.00 0.00 4.16
2149 2891 0.759346 AGAGTGAGGCTGGAACGTTT 59.241 50.000 0.46 0.00 0.00 3.60
2220 2965 7.363793 GGAAGGCCAGATACATAACAACAAATT 60.364 37.037 5.01 0.00 0.00 1.82
2221 2966 6.096846 GGAAGGCCAGATACATAACAACAAAT 59.903 38.462 5.01 0.00 0.00 2.32
2304 3050 9.006839 GTTTAGGTAGGTGTAAACTGCTTTTAT 57.993 33.333 0.00 0.00 36.57 1.40
2395 3758 3.622612 GCAGCTTTGTTGGTTCACATTTT 59.377 39.130 0.00 0.00 0.00 1.82
2501 4219 2.483877 TGATTTCACTTCATCGCCACAC 59.516 45.455 0.00 0.00 0.00 3.82
2635 4354 1.334556 TGCGGATGCTGATAAACATGC 59.665 47.619 0.00 0.00 43.34 4.06
2681 4400 4.066490 GCATATCTGAGAGCAGCAGAATT 58.934 43.478 7.17 0.00 44.71 2.17
2682 4401 3.071167 TGCATATCTGAGAGCAGCAGAAT 59.929 43.478 7.17 1.70 44.71 2.40
2816 4535 4.718961 ACAGACATTAGCAAGTTCCAGTT 58.281 39.130 0.00 0.00 0.00 3.16
3304 5936 7.496346 AGAAGATCCACAGACAAATAAGGTA 57.504 36.000 0.00 0.00 0.00 3.08
3305 5937 6.380079 AGAAGATCCACAGACAAATAAGGT 57.620 37.500 0.00 0.00 0.00 3.50
3454 7252 9.724839 CTACTTCTAACAGCTAGAACAAGATAC 57.275 37.037 0.00 0.00 40.95 2.24
4084 8002 4.142773 TGCTTAGCGCGCTATTTAAAACTT 60.143 37.500 38.51 13.94 43.27 2.66
4085 8003 3.372822 TGCTTAGCGCGCTATTTAAAACT 59.627 39.130 38.51 14.50 43.27 2.66
4086 8004 3.676540 TGCTTAGCGCGCTATTTAAAAC 58.323 40.909 38.51 22.00 43.27 2.43
4087 8005 4.272504 AGATGCTTAGCGCGCTATTTAAAA 59.727 37.500 38.51 24.43 43.27 1.52
4089 8007 3.390135 AGATGCTTAGCGCGCTATTTAA 58.610 40.909 38.51 25.53 43.27 1.52
4090 8008 3.026630 AGATGCTTAGCGCGCTATTTA 57.973 42.857 38.51 26.65 43.27 1.40
4091 8009 1.871080 AGATGCTTAGCGCGCTATTT 58.129 45.000 38.51 23.54 43.27 1.40
4092 8010 1.871080 AAGATGCTTAGCGCGCTATT 58.129 45.000 38.51 26.01 43.27 1.73
4093 8011 2.600731 CTAAGATGCTTAGCGCGCTAT 58.399 47.619 38.51 26.50 43.27 2.97
4094 8012 1.930817 GCTAAGATGCTTAGCGCGCTA 60.931 52.381 35.48 35.48 43.27 4.26
4095 8013 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
4096 8014 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
4100 8018 1.560860 CCGCCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
4101 8019 0.032130 TCCGCCGCTAAGATGCTTAG 59.968 55.000 9.30 9.30 0.00 2.18
4102 8020 0.249322 GTCCGCCGCTAAGATGCTTA 60.249 55.000 0.00 0.00 0.00 3.09
4103 8021 1.521681 GTCCGCCGCTAAGATGCTT 60.522 57.895 0.00 0.00 0.00 3.91
4104 8022 2.107141 GTCCGCCGCTAAGATGCT 59.893 61.111 0.00 0.00 0.00 3.79
4105 8023 2.967615 GGTCCGCCGCTAAGATGC 60.968 66.667 0.00 0.00 0.00 3.91
4106 8024 1.300233 GAGGTCCGCCGCTAAGATG 60.300 63.158 0.00 0.00 40.50 2.90
4107 8025 1.043673 AAGAGGTCCGCCGCTAAGAT 61.044 55.000 0.00 0.00 44.34 2.40
4108 8026 1.255667 AAAGAGGTCCGCCGCTAAGA 61.256 55.000 0.00 0.00 44.34 2.10
4109 8027 0.806492 GAAAGAGGTCCGCCGCTAAG 60.806 60.000 0.00 0.00 44.34 2.18
4110 8028 1.217244 GAAAGAGGTCCGCCGCTAA 59.783 57.895 0.00 0.00 44.34 3.09
4111 8029 1.537814 TTGAAAGAGGTCCGCCGCTA 61.538 55.000 0.00 0.00 44.34 4.26
4113 8031 1.305930 ATTTGAAAGAGGTCCGCCGC 61.306 55.000 0.00 0.00 40.50 6.53
4114 8032 0.447801 CATTTGAAAGAGGTCCGCCG 59.552 55.000 0.00 0.00 40.50 6.46
4115 8033 0.171231 GCATTTGAAAGAGGTCCGCC 59.829 55.000 0.00 0.00 0.00 6.13
4116 8034 1.168714 AGCATTTGAAAGAGGTCCGC 58.831 50.000 0.00 0.00 0.00 5.54
4117 8035 4.212214 GCTATAGCATTTGAAAGAGGTCCG 59.788 45.833 20.01 0.00 41.59 4.79
4118 8036 4.212214 CGCTATAGCATTTGAAAGAGGTCC 59.788 45.833 23.99 0.00 42.21 4.46
4119 8037 4.811557 ACGCTATAGCATTTGAAAGAGGTC 59.188 41.667 23.99 0.00 42.21 3.85
4120 8038 4.572389 CACGCTATAGCATTTGAAAGAGGT 59.428 41.667 23.99 6.60 42.21 3.85
4121 8039 4.553547 GCACGCTATAGCATTTGAAAGAGG 60.554 45.833 23.99 5.98 42.21 3.69
4122 8040 4.272018 AGCACGCTATAGCATTTGAAAGAG 59.728 41.667 23.99 6.48 42.21 2.85
4123 8041 4.191544 AGCACGCTATAGCATTTGAAAGA 58.808 39.130 23.99 0.00 42.21 2.52
4124 8042 4.542662 AGCACGCTATAGCATTTGAAAG 57.457 40.909 23.99 7.87 42.21 2.62
4125 8043 7.351414 CTATAGCACGCTATAGCATTTGAAA 57.649 36.000 25.42 9.51 46.26 2.69
4126 8044 6.951256 CTATAGCACGCTATAGCATTTGAA 57.049 37.500 25.42 9.81 46.26 2.69
4135 8053 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
4136 8054 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
4137 8055 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
4138 8056 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
4139 8057 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
4147 8065 2.868196 CGCGCTATAGCTCCGCTA 59.132 61.111 21.98 0.00 45.55 4.26
4150 8068 0.179161 AATAGCGCGCTATAGCTCCG 60.179 55.000 43.81 22.32 43.44 4.63
4151 8069 1.997669 AAATAGCGCGCTATAGCTCC 58.002 50.000 43.81 10.26 43.44 4.70
4152 8070 5.511088 TTTTAAATAGCGCGCTATAGCTC 57.489 39.130 43.81 13.77 43.44 4.09
4153 8071 5.408604 ACATTTTAAATAGCGCGCTATAGCT 59.591 36.000 43.81 33.17 46.53 3.32
4154 8072 5.618561 ACATTTTAAATAGCGCGCTATAGC 58.381 37.500 43.81 15.09 38.20 2.97
4155 8073 7.586300 ACAAACATTTTAAATAGCGCGCTATAG 59.414 33.333 43.81 29.40 38.20 1.31
4156 8074 7.411274 ACAAACATTTTAAATAGCGCGCTATA 58.589 30.769 43.81 31.73 38.20 1.31
4157 8075 6.262601 ACAAACATTTTAAATAGCGCGCTAT 58.737 32.000 40.32 40.32 40.63 2.97
4158 8076 5.632959 ACAAACATTTTAAATAGCGCGCTA 58.367 33.333 39.72 39.72 0.00 4.26
4159 8077 4.481463 ACAAACATTTTAAATAGCGCGCT 58.519 34.783 38.01 38.01 0.00 5.92
4160 8078 4.816277 ACAAACATTTTAAATAGCGCGC 57.184 36.364 26.66 26.66 0.00 6.86
4161 8079 6.369326 TGAACAAACATTTTAAATAGCGCG 57.631 33.333 0.00 0.00 0.00 6.86
4162 8080 9.039500 CAAATGAACAAACATTTTAAATAGCGC 57.961 29.630 0.00 0.00 44.63 5.92
4170 8088 8.669243 GGTCCAAACAAATGAACAAACATTTTA 58.331 29.630 0.00 0.00 44.63 1.52
4171 8089 7.175641 TGGTCCAAACAAATGAACAAACATTTT 59.824 29.630 0.00 0.00 44.63 1.82
4172 8090 6.656693 TGGTCCAAACAAATGAACAAACATTT 59.343 30.769 0.00 0.00 46.85 2.32
4173 8091 6.176183 TGGTCCAAACAAATGAACAAACATT 58.824 32.000 0.00 0.00 41.43 2.71
4174 8092 5.738909 TGGTCCAAACAAATGAACAAACAT 58.261 33.333 0.00 0.00 0.00 2.71
4175 8093 5.152623 TGGTCCAAACAAATGAACAAACA 57.847 34.783 0.00 0.00 0.00 2.83
4176 8094 6.148645 ACTTTGGTCCAAACAAATGAACAAAC 59.851 34.615 13.26 0.00 39.91 2.93
4177 8095 6.234177 ACTTTGGTCCAAACAAATGAACAAA 58.766 32.000 13.26 0.00 41.86 2.83
4178 8096 5.799213 ACTTTGGTCCAAACAAATGAACAA 58.201 33.333 13.26 0.00 37.22 2.83
4179 8097 5.186797 AGACTTTGGTCCAAACAAATGAACA 59.813 36.000 13.26 0.00 43.05 3.18
4180 8098 5.660460 AGACTTTGGTCCAAACAAATGAAC 58.340 37.500 13.26 4.31 43.05 3.18
4181 8099 5.656416 AGAGACTTTGGTCCAAACAAATGAA 59.344 36.000 13.26 0.00 43.05 2.57
4182 8100 5.200483 AGAGACTTTGGTCCAAACAAATGA 58.800 37.500 13.26 0.00 43.05 2.57
4183 8101 5.520376 AGAGACTTTGGTCCAAACAAATG 57.480 39.130 13.26 6.01 43.05 2.32
4184 8102 6.239036 GCTAAGAGACTTTGGTCCAAACAAAT 60.239 38.462 13.26 0.00 43.05 2.32
4185 8103 5.067283 GCTAAGAGACTTTGGTCCAAACAAA 59.933 40.000 13.26 0.00 43.05 2.83
4186 8104 4.578928 GCTAAGAGACTTTGGTCCAAACAA 59.421 41.667 13.26 0.00 43.05 2.83
4187 8105 4.134563 GCTAAGAGACTTTGGTCCAAACA 58.865 43.478 13.26 0.00 43.05 2.83
4188 8106 3.186613 CGCTAAGAGACTTTGGTCCAAAC 59.813 47.826 13.26 4.96 43.05 2.93
4189 8107 3.399330 CGCTAAGAGACTTTGGTCCAAA 58.601 45.455 16.26 16.26 43.05 3.28
4190 8108 2.870435 GCGCTAAGAGACTTTGGTCCAA 60.870 50.000 0.00 0.00 43.05 3.53
4191 8109 1.337823 GCGCTAAGAGACTTTGGTCCA 60.338 52.381 0.00 0.00 43.05 4.02
4192 8110 1.337823 TGCGCTAAGAGACTTTGGTCC 60.338 52.381 9.73 0.00 43.05 4.46
4193 8111 2.080286 TGCGCTAAGAGACTTTGGTC 57.920 50.000 9.73 0.00 42.41 4.02
4194 8112 2.037251 TCTTGCGCTAAGAGACTTTGGT 59.963 45.455 9.73 0.00 40.43 3.67
4195 8113 2.413453 GTCTTGCGCTAAGAGACTTTGG 59.587 50.000 18.44 0.00 45.71 3.28
4196 8114 2.413453 GGTCTTGCGCTAAGAGACTTTG 59.587 50.000 22.91 0.00 45.71 2.77
4197 8115 2.300437 AGGTCTTGCGCTAAGAGACTTT 59.700 45.455 22.91 14.31 45.71 2.66
4198 8116 1.896465 AGGTCTTGCGCTAAGAGACTT 59.104 47.619 22.91 17.23 45.71 3.01
4199 8117 1.551452 AGGTCTTGCGCTAAGAGACT 58.449 50.000 22.91 18.83 45.71 3.24
4200 8118 2.371910 AAGGTCTTGCGCTAAGAGAC 57.628 50.000 18.44 18.59 45.71 3.36
4201 8119 3.067106 CAAAAGGTCTTGCGCTAAGAGA 58.933 45.455 18.44 9.99 45.71 3.10
4202 8120 2.808543 ACAAAAGGTCTTGCGCTAAGAG 59.191 45.455 18.44 10.73 45.71 2.85
4203 8121 2.846193 ACAAAAGGTCTTGCGCTAAGA 58.154 42.857 9.73 13.31 43.01 2.10
4204 8122 4.742438 TTACAAAAGGTCTTGCGCTAAG 57.258 40.909 9.73 11.02 37.76 2.18
4205 8123 4.553156 CGTTTACAAAAGGTCTTGCGCTAA 60.553 41.667 9.73 0.00 0.00 3.09
4206 8124 3.059461 CGTTTACAAAAGGTCTTGCGCTA 60.059 43.478 9.73 0.00 0.00 4.26
4207 8125 2.286772 CGTTTACAAAAGGTCTTGCGCT 60.287 45.455 9.73 0.00 0.00 5.92
4208 8126 2.041244 CGTTTACAAAAGGTCTTGCGC 58.959 47.619 0.00 0.00 0.00 6.09
4209 8127 2.041244 GCGTTTACAAAAGGTCTTGCG 58.959 47.619 0.00 0.00 0.00 4.85
4210 8128 3.349488 AGCGTTTACAAAAGGTCTTGC 57.651 42.857 0.00 0.00 0.00 4.01
4211 8129 6.248631 GCTATAGCGTTTACAAAAGGTCTTG 58.751 40.000 9.40 0.00 31.10 3.02
4212 8130 6.418585 GCTATAGCGTTTACAAAAGGTCTT 57.581 37.500 9.40 0.00 31.10 3.01
4230 8148 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
4231 8149 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
4232 8150 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
4233 8151 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
4234 8152 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
4242 8160 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
4243 8161 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
4244 8162 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
4245 8163 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
4246 8164 4.467198 TTAAATAGCCCGCTATAGCTCC 57.533 45.455 21.98 10.06 40.56 4.70
4247 8165 5.699458 TGTTTTAAATAGCCCGCTATAGCTC 59.301 40.000 21.98 11.04 40.56 4.09
4248 8166 5.617252 TGTTTTAAATAGCCCGCTATAGCT 58.383 37.500 21.98 6.31 43.20 3.32
4249 8167 5.469084 ACTGTTTTAAATAGCCCGCTATAGC 59.531 40.000 15.09 15.09 38.20 2.97
4250 8168 6.482308 ACACTGTTTTAAATAGCCCGCTATAG 59.518 38.462 9.56 4.62 38.20 1.31
4251 8169 6.350906 ACACTGTTTTAAATAGCCCGCTATA 58.649 36.000 9.56 0.00 38.20 1.31
4252 8170 5.190677 ACACTGTTTTAAATAGCCCGCTAT 58.809 37.500 3.31 3.31 40.63 2.97
4253 8171 4.581868 ACACTGTTTTAAATAGCCCGCTA 58.418 39.130 0.00 0.00 0.00 4.26
4254 8172 3.418047 ACACTGTTTTAAATAGCCCGCT 58.582 40.909 1.36 0.00 0.00 5.52
4255 8173 3.842732 ACACTGTTTTAAATAGCCCGC 57.157 42.857 1.36 0.00 0.00 6.13
4256 8174 6.210078 TGAAAACACTGTTTTAAATAGCCCG 58.790 36.000 17.91 0.00 0.00 6.13
4257 8175 7.870445 TGATGAAAACACTGTTTTAAATAGCCC 59.130 33.333 17.91 5.88 0.00 5.19
4258 8176 8.810652 TGATGAAAACACTGTTTTAAATAGCC 57.189 30.769 17.91 6.49 0.00 3.93
4262 8180 9.180678 GACGATGATGAAAACACTGTTTTAAAT 57.819 29.630 17.91 14.57 0.00 1.40
4268 8186 5.692814 CATGACGATGATGAAAACACTGTT 58.307 37.500 0.00 0.00 0.00 3.16
4269 8187 4.378770 GCATGACGATGATGAAAACACTGT 60.379 41.667 0.00 0.00 0.00 3.55
4272 8190 4.346734 AGCATGACGATGATGAAAACAC 57.653 40.909 0.00 0.00 0.00 3.32
4274 8192 6.349973 TCTAAGCATGACGATGATGAAAAC 57.650 37.500 0.00 0.00 0.00 2.43
4276 8194 6.983474 TTTCTAAGCATGACGATGATGAAA 57.017 33.333 0.00 0.00 0.00 2.69
4320 8254 3.243941 TGCTTGACTAGTTTGCGAAGGTA 60.244 43.478 0.00 0.00 0.00 3.08
4354 8379 1.611491 GGGTCGCCAGTGATTTTTCAA 59.389 47.619 0.00 0.00 0.00 2.69
4394 8530 7.671302 AGCTGAGTTGATACTTCTTTTCTACA 58.329 34.615 0.00 0.00 33.84 2.74
4703 9248 4.074970 CCCACCCTATCAGATGCAAATAC 58.925 47.826 0.00 0.00 0.00 1.89
4935 10072 5.864986 GCATAATGTTGCTGTACTTACGTT 58.135 37.500 0.00 0.00 39.57 3.99
5302 10532 3.349022 CCATGGGCATGCAAGAAAATTT 58.651 40.909 21.36 0.00 37.49 1.82
5397 10631 5.640189 ACAGCTTCAGGAAATTCAGATTG 57.360 39.130 0.00 0.00 0.00 2.67
5411 10645 3.009473 AGCAGGAATAGGAAACAGCTTCA 59.991 43.478 0.00 0.00 35.55 3.02
5522 10783 5.242393 AGTGACATATGAGCAAAACAAGCTT 59.758 36.000 10.38 0.00 43.58 3.74
5524 10785 4.855388 CAGTGACATATGAGCAAAACAAGC 59.145 41.667 10.38 0.00 0.00 4.01
5672 11637 9.512435 CAAGAAATAGTTCTAATCAATGCAAGG 57.488 33.333 5.76 0.00 43.59 3.61
5686 11888 9.780413 GAAGTGAATGAATCCAAGAAATAGTTC 57.220 33.333 0.00 0.00 0.00 3.01
5910 12229 4.809426 GCCTGACAATATACCTGTGTGTAC 59.191 45.833 0.00 0.00 0.00 2.90
6009 12338 6.037391 CACACTGCAAAGGTCAATCAATTTTT 59.963 34.615 0.00 0.00 0.00 1.94
6148 12485 6.195700 ACCACTAGCTCTAGAATGGAACTTA 58.804 40.000 16.08 0.00 36.97 2.24
6256 12599 9.823647 ACATAGTATGAGTCAGGTTTAATTCTG 57.176 33.333 17.13 0.62 0.00 3.02
6257 12600 9.823647 CACATAGTATGAGTCAGGTTTAATTCT 57.176 33.333 17.13 0.00 0.00 2.40
6299 12785 5.221009 CGTCTAGCTCTTTACCTATTCGGTT 60.221 44.000 0.00 0.00 46.37 4.44
6301 12787 4.514441 TCGTCTAGCTCTTTACCTATTCGG 59.486 45.833 0.00 0.00 39.35 4.30
6302 12788 5.670149 TCGTCTAGCTCTTTACCTATTCG 57.330 43.478 0.00 0.00 0.00 3.34
6454 13002 0.876777 TGGTCGTGCACGTAAACAGG 60.877 55.000 35.74 8.45 40.80 4.00
6563 13452 5.104817 CCTGAAATTTATTGGCCCAGACAAT 60.105 40.000 0.00 0.66 44.25 2.71
6697 13588 2.213499 AGACGGTGAAAACTTGCTCTG 58.787 47.619 0.00 0.00 0.00 3.35
6716 13609 4.891566 GTGCCTACACCAGACGAG 57.108 61.111 0.00 0.00 41.21 4.18
6910 13810 0.613777 GTCAGTTTCGACCCTCCCAT 59.386 55.000 0.00 0.00 0.00 4.00
6953 13853 3.427909 CGGTGGAATCAAATGACATGGTG 60.428 47.826 0.00 0.00 0.00 4.17
6955 13855 2.754552 ACGGTGGAATCAAATGACATGG 59.245 45.455 0.00 0.00 0.00 3.66
7024 13924 2.224159 GGTCCAACTCCAGAGCCCA 61.224 63.158 0.00 0.00 0.00 5.36
7068 13968 5.126779 GGAAGATGGATTCCTTACCAGAAC 58.873 45.833 3.95 0.00 44.57 3.01
7243 14171 2.283894 TGAGCTTCCCTCCGCAGA 60.284 61.111 0.00 0.00 39.98 4.26
7302 14258 9.651913 AATTTAAAGTTCAGCTTTTTGTCTGAA 57.348 25.926 0.00 1.03 44.41 3.02
7314 14270 3.796717 GGCGCCATAATTTAAAGTTCAGC 59.203 43.478 24.80 0.00 0.00 4.26
7338 14300 2.558378 CTCCATGAATCACGCACAGAT 58.442 47.619 0.00 0.00 0.00 2.90
7403 14366 4.704540 TGCAGGTTTCAGAGAACTCAAAAA 59.295 37.500 4.64 1.99 0.00 1.94
7422 14385 4.375272 CTCCACATACTAACAGGATGCAG 58.625 47.826 0.00 0.00 42.53 4.41
7457 14420 5.504665 GCACAGTTAGGAATTTCATCATCCG 60.505 44.000 0.00 0.00 38.31 4.18
7542 14514 3.441163 CATGCGAACCAAAATGGATCAG 58.559 45.455 2.85 0.00 40.96 2.90
7556 14528 3.004315 GGTCTGAACTTTTTCCATGCGAA 59.996 43.478 0.00 0.00 0.00 4.70
7570 14542 4.068599 AGCTTAGAGCAAAAGGTCTGAAC 58.931 43.478 7.39 0.00 45.56 3.18
7571 14543 4.067896 CAGCTTAGAGCAAAAGGTCTGAA 58.932 43.478 7.39 0.00 45.56 3.02
7572 14544 3.668447 CAGCTTAGAGCAAAAGGTCTGA 58.332 45.455 7.39 0.00 45.56 3.27
7573 14545 2.161211 GCAGCTTAGAGCAAAAGGTCTG 59.839 50.000 7.39 0.00 45.56 3.51
7574 14546 2.039613 AGCAGCTTAGAGCAAAAGGTCT 59.960 45.455 2.47 2.61 45.56 3.85
7575 14547 2.161211 CAGCAGCTTAGAGCAAAAGGTC 59.839 50.000 0.00 0.00 45.56 3.85
7577 14549 1.135460 GCAGCAGCTTAGAGCAAAAGG 60.135 52.381 0.00 0.00 45.56 3.11
7578 14550 2.259505 GCAGCAGCTTAGAGCAAAAG 57.740 50.000 0.00 0.00 45.56 2.27
7604 18904 1.527034 ATATGGTGCGTGATCCATGC 58.473 50.000 6.91 4.34 45.53 4.06
7623 18936 7.429633 TCGGATAAAAGCATTGAACTTCAAAA 58.570 30.769 8.28 0.00 40.12 2.44
7635 18948 2.351726 GCGTGTTCTCGGATAAAAGCAT 59.648 45.455 0.00 0.00 0.00 3.79
7638 18951 2.093783 GGTGCGTGTTCTCGGATAAAAG 59.906 50.000 0.00 0.00 33.36 2.27
7685 19020 1.117150 GATCAACCCTGCATGCCAAT 58.883 50.000 16.68 0.00 0.00 3.16
7847 19214 2.928757 CAGGAAGTCAAGAGATTGCGAG 59.071 50.000 0.00 0.00 0.00 5.03
7921 19288 1.155889 CACTATGCACTTGCGTTCCA 58.844 50.000 0.32 0.00 45.83 3.53
7936 19303 7.742556 TGTGTCATGTCATTTGATTTCACTA 57.257 32.000 0.00 0.00 0.00 2.74
8105 19476 1.001020 TGGCTTCGCATGGGTGATT 60.001 52.632 9.86 0.00 32.68 2.57
8131 19502 6.053005 GTGGTTATCAAACGAGGATGGATAA 58.947 40.000 0.00 0.00 36.39 1.75
8133 19504 4.164221 AGTGGTTATCAAACGAGGATGGAT 59.836 41.667 0.00 0.00 36.39 3.41
8134 19505 3.517901 AGTGGTTATCAAACGAGGATGGA 59.482 43.478 0.00 0.00 36.39 3.41
8135 19506 3.873910 AGTGGTTATCAAACGAGGATGG 58.126 45.455 0.00 0.00 36.39 3.51
8136 19507 5.631026 CAAAGTGGTTATCAAACGAGGATG 58.369 41.667 0.00 0.00 36.39 3.51
8137 19508 4.156008 GCAAAGTGGTTATCAAACGAGGAT 59.844 41.667 0.00 0.00 36.39 3.24
8138 19509 3.500680 GCAAAGTGGTTATCAAACGAGGA 59.499 43.478 0.00 0.00 36.39 3.71
8139 19510 3.666902 CGCAAAGTGGTTATCAAACGAGG 60.667 47.826 0.00 0.00 36.39 4.63
8140 19511 3.059188 ACGCAAAGTGGTTATCAAACGAG 60.059 43.478 0.00 0.00 36.39 4.18
8141 19512 2.873472 ACGCAAAGTGGTTATCAAACGA 59.127 40.909 0.00 0.00 36.39 3.85
8142 19513 3.223157 GACGCAAAGTGGTTATCAAACG 58.777 45.455 0.00 0.00 36.39 3.60
8153 19524 2.734606 TGGATAACTTCGACGCAAAGTG 59.265 45.455 3.02 0.00 37.06 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.