Multiple sequence alignment - TraesCS5B01G003700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G003700 chr5B 100.000 3575 0 0 1 3575 5073952 5070378 0.000000e+00 6602.0
1 TraesCS5B01G003700 chr5B 88.785 428 43 3 2732 3155 297082182 297082608 1.470000e-143 520.0
2 TraesCS5B01G003700 chr5D 90.533 2271 108 30 535 2730 3661331 3659093 0.000000e+00 2904.0
3 TraesCS5B01G003700 chr5D 90.995 2210 104 26 577 2711 3632412 3634601 0.000000e+00 2891.0
4 TraesCS5B01G003700 chr5D 85.385 1560 222 4 1013 2572 93862945 93861392 0.000000e+00 1613.0
5 TraesCS5B01G003700 chr5D 89.294 411 35 7 2721 3123 554603263 554603672 1.150000e-139 507.0
6 TraesCS5B01G003700 chr5D 88.729 417 33 10 2732 3142 336652892 336652484 6.890000e-137 497.0
7 TraesCS5B01G003700 chr5D 83.693 417 34 11 3156 3551 3659055 3658652 2.620000e-96 363.0
8 TraesCS5B01G003700 chr5D 83.413 416 35 11 3156 3550 3634662 3635064 4.390000e-94 355.0
9 TraesCS5B01G003700 chr5D 82.872 397 33 22 3158 3551 3635408 3635772 1.240000e-84 324.0
10 TraesCS5B01G003700 chr5D 87.931 116 6 4 315 430 3632295 3632402 2.900000e-26 130.0
11 TraesCS5B01G003700 chr5A 88.977 2268 149 35 524 2708 2618016 2615767 0.000000e+00 2710.0
12 TraesCS5B01G003700 chr5A 90.237 1475 82 25 522 1977 2430694 2429263 0.000000e+00 1869.0
13 TraesCS5B01G003700 chr5A 89.362 423 37 5 2733 3149 365049165 365049585 3.160000e-145 525.0
14 TraesCS5B01G003700 chr5A 90.086 232 21 1 3158 3387 2428645 2428414 2.090000e-77 300.0
15 TraesCS5B01G003700 chr5A 88.398 181 18 2 3302 3480 2614018 2613839 7.770000e-52 215.0
16 TraesCS5B01G003700 chr5A 87.179 78 2 2 334 411 2430789 2430720 8.230000e-12 82.4
17 TraesCS5B01G003700 chr7A 87.753 1731 183 16 945 2666 700300257 700301967 0.000000e+00 1995.0
18 TraesCS5B01G003700 chr7A 87.695 1731 184 16 945 2666 700338075 700339785 0.000000e+00 1989.0
19 TraesCS5B01G003700 chr7A 89.655 435 36 7 2733 3161 195351692 195351261 2.430000e-151 545.0
20 TraesCS5B01G003700 chr7A 87.273 440 45 9 2733 3164 630334173 630334609 3.210000e-135 492.0
21 TraesCS5B01G003700 chr7A 87.354 427 39 13 2734 3155 679967697 679967281 3.230000e-130 475.0
22 TraesCS5B01G003700 chr7D 87.193 1710 174 19 1014 2709 610421486 610419808 0.000000e+00 1903.0
23 TraesCS5B01G003700 chr7D 89.583 288 29 1 1 288 213810880 213810594 7.290000e-97 364.0
24 TraesCS5B01G003700 chr7B 86.569 1705 200 13 1014 2706 698682826 698684513 0.000000e+00 1853.0
25 TraesCS5B01G003700 chr7B 89.619 289 26 3 3 288 454515721 454516008 7.290000e-97 364.0
26 TraesCS5B01G003700 chr7B 84.615 65 10 0 463 527 447131656 447131592 8.280000e-07 65.8
27 TraesCS5B01G003700 chrUn 85.537 1777 214 20 945 2709 77521369 77523114 0.000000e+00 1818.0
28 TraesCS5B01G003700 chr3A 87.760 433 46 5 2721 3147 387303151 387303582 1.920000e-137 499.0
29 TraesCS5B01G003700 chr1A 87.209 430 50 3 2733 3157 226907250 226906821 5.370000e-133 484.0
30 TraesCS5B01G003700 chr3B 90.244 287 27 1 1 287 200558330 200558045 1.210000e-99 374.0
31 TraesCS5B01G003700 chr4B 89.931 288 27 2 1 288 103953909 103953624 1.570000e-98 370.0
32 TraesCS5B01G003700 chr4B 89.931 288 27 2 1 288 493693089 493692804 1.570000e-98 370.0
33 TraesCS5B01G003700 chr3D 89.931 288 28 1 1 288 2916062 2916348 1.570000e-98 370.0
34 TraesCS5B01G003700 chr2B 90.175 285 27 1 4 288 541553142 541553425 1.570000e-98 370.0
35 TraesCS5B01G003700 chr2B 89.583 288 29 1 1 288 573589294 573589580 7.290000e-97 364.0
36 TraesCS5B01G003700 chr6D 89.583 288 28 2 1 288 471026172 471025887 7.290000e-97 364.0
37 TraesCS5B01G003700 chr2D 84.615 65 10 0 445 509 76890822 76890758 8.280000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G003700 chr5B 5070378 5073952 3574 True 6602.000000 6602 100.000000 1 3575 1 chr5B.!!$R1 3574
1 TraesCS5B01G003700 chr5D 3658652 3661331 2679 True 1633.500000 2904 87.113000 535 3551 2 chr5D.!!$R3 3016
2 TraesCS5B01G003700 chr5D 93861392 93862945 1553 True 1613.000000 1613 85.385000 1013 2572 1 chr5D.!!$R1 1559
3 TraesCS5B01G003700 chr5D 3632295 3635772 3477 False 925.000000 2891 86.302750 315 3551 4 chr5D.!!$F2 3236
4 TraesCS5B01G003700 chr5A 2613839 2618016 4177 True 1462.500000 2710 88.687500 524 3480 2 chr5A.!!$R2 2956
5 TraesCS5B01G003700 chr5A 2428414 2430789 2375 True 750.466667 1869 89.167333 334 3387 3 chr5A.!!$R1 3053
6 TraesCS5B01G003700 chr7A 700300257 700301967 1710 False 1995.000000 1995 87.753000 945 2666 1 chr7A.!!$F2 1721
7 TraesCS5B01G003700 chr7A 700338075 700339785 1710 False 1989.000000 1989 87.695000 945 2666 1 chr7A.!!$F3 1721
8 TraesCS5B01G003700 chr7D 610419808 610421486 1678 True 1903.000000 1903 87.193000 1014 2709 1 chr7D.!!$R2 1695
9 TraesCS5B01G003700 chr7B 698682826 698684513 1687 False 1853.000000 1853 86.569000 1014 2706 1 chr7B.!!$F2 1692
10 TraesCS5B01G003700 chrUn 77521369 77523114 1745 False 1818.000000 1818 85.537000 945 2709 1 chrUn.!!$F1 1764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.030908 GTAGAAGCCCTCCGTGATCG 59.969 60.0 0.0 0.0 0.00 3.69 F
141 142 0.105039 GAAGCCCTCCGTGATCGAAT 59.895 55.0 0.0 0.0 39.71 3.34 F
592 605 0.248215 CATGCTTCGATTTGCCGACC 60.248 55.0 0.0 0.0 38.39 4.79 F
2214 2303 0.606673 GCTTCGAGGGCTTCAAGGTT 60.607 55.0 0.0 0.0 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2055 0.528470 CTGTCGGAGTCCTTGTCTCC 59.472 60.0 7.77 2.27 45.56 3.71 R
1968 2057 0.962489 CACTGTCGGAGTCCTTGTCT 59.038 55.0 7.77 0.00 29.75 3.41 R
2432 2527 0.107945 CTCCTTGGCCTCTTCTTCCG 60.108 60.0 3.32 0.00 0.00 4.30 R
3454 5920 0.323360 GGGCTGGGTAAGTTCATGCA 60.323 55.0 0.00 0.00 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.123497 TCGAGGTGAACATGGTATTGAG 57.877 45.455 0.00 0.00 0.00 3.02
22 23 3.767131 TCGAGGTGAACATGGTATTGAGA 59.233 43.478 0.00 0.00 0.00 3.27
23 24 4.221924 TCGAGGTGAACATGGTATTGAGAA 59.778 41.667 0.00 0.00 0.00 2.87
24 25 5.104941 TCGAGGTGAACATGGTATTGAGAAT 60.105 40.000 0.00 0.00 0.00 2.40
25 26 5.586243 CGAGGTGAACATGGTATTGAGAATT 59.414 40.000 0.00 0.00 0.00 2.17
26 27 6.761242 CGAGGTGAACATGGTATTGAGAATTA 59.239 38.462 0.00 0.00 0.00 1.40
27 28 7.279981 CGAGGTGAACATGGTATTGAGAATTAA 59.720 37.037 0.00 0.00 0.00 1.40
28 29 8.877864 AGGTGAACATGGTATTGAGAATTAAA 57.122 30.769 0.00 0.00 0.00 1.52
29 30 8.960591 AGGTGAACATGGTATTGAGAATTAAAG 58.039 33.333 0.00 0.00 0.00 1.85
30 31 8.956426 GGTGAACATGGTATTGAGAATTAAAGA 58.044 33.333 0.00 0.00 0.00 2.52
31 32 9.994432 GTGAACATGGTATTGAGAATTAAAGAG 57.006 33.333 0.00 0.00 0.00 2.85
32 33 9.958180 TGAACATGGTATTGAGAATTAAAGAGA 57.042 29.630 0.00 0.00 0.00 3.10
35 36 9.829507 ACATGGTATTGAGAATTAAAGAGAGAG 57.170 33.333 0.00 0.00 0.00 3.20
42 43 8.770438 TTGAGAATTAAAGAGAGAGAAGAAGC 57.230 34.615 0.00 0.00 0.00 3.86
43 44 7.901029 TGAGAATTAAAGAGAGAGAAGAAGCA 58.099 34.615 0.00 0.00 0.00 3.91
44 45 8.370940 TGAGAATTAAAGAGAGAGAAGAAGCAA 58.629 33.333 0.00 0.00 0.00 3.91
45 46 9.382275 GAGAATTAAAGAGAGAGAAGAAGCAAT 57.618 33.333 0.00 0.00 0.00 3.56
46 47 9.382275 AGAATTAAAGAGAGAGAAGAAGCAATC 57.618 33.333 0.00 0.00 0.00 2.67
47 48 9.382275 GAATTAAAGAGAGAGAAGAAGCAATCT 57.618 33.333 0.00 0.00 41.32 2.40
50 51 5.520376 AGAGAGAGAAGAAGCAATCTAGC 57.480 43.478 0.00 0.00 37.42 3.42
52 53 6.364701 AGAGAGAGAAGAAGCAATCTAGCTA 58.635 40.000 0.00 0.00 45.89 3.32
53 54 6.263168 AGAGAGAGAAGAAGCAATCTAGCTAC 59.737 42.308 0.00 0.00 45.89 3.58
54 55 6.129179 AGAGAGAAGAAGCAATCTAGCTACT 58.871 40.000 0.00 0.00 45.89 2.57
55 56 7.287061 AGAGAGAAGAAGCAATCTAGCTACTA 58.713 38.462 0.00 0.00 45.89 1.82
56 57 7.445402 AGAGAGAAGAAGCAATCTAGCTACTAG 59.555 40.741 0.00 0.00 45.89 2.57
57 58 6.016276 AGAGAAGAAGCAATCTAGCTACTAGC 60.016 42.308 0.00 0.00 45.89 3.42
68 69 1.618487 GCTACTAGCTATGGACCCGT 58.382 55.000 0.35 0.00 38.45 5.28
69 70 2.787994 GCTACTAGCTATGGACCCGTA 58.212 52.381 0.35 0.00 38.45 4.02
70 71 2.748532 GCTACTAGCTATGGACCCGTAG 59.251 54.545 10.26 10.26 38.45 3.51
71 72 4.428275 GCTACTAGCTATGGACCCGTAGG 61.428 56.522 15.07 3.78 43.43 3.18
72 73 6.864774 GCTACTAGCTATGGACCCGTAGGT 62.865 54.167 19.95 19.95 43.96 3.08
88 89 4.979388 CGTAGGTCTGTGGTAAACTACTC 58.021 47.826 0.00 0.00 31.19 2.59
89 90 4.456911 CGTAGGTCTGTGGTAAACTACTCA 59.543 45.833 0.00 0.00 31.19 3.41
90 91 4.868314 AGGTCTGTGGTAAACTACTCAC 57.132 45.455 0.00 0.00 33.39 3.51
91 92 3.255149 AGGTCTGTGGTAAACTACTCACG 59.745 47.826 0.00 0.00 34.62 4.35
92 93 3.005155 GGTCTGTGGTAAACTACTCACGT 59.995 47.826 0.00 0.00 34.62 4.49
93 94 4.500375 GGTCTGTGGTAAACTACTCACGTT 60.500 45.833 0.00 0.00 34.62 3.99
94 95 5.045872 GTCTGTGGTAAACTACTCACGTTT 58.954 41.667 0.00 0.00 38.13 3.60
95 96 5.174579 GTCTGTGGTAAACTACTCACGTTTC 59.825 44.000 0.00 0.00 36.18 2.78
96 97 5.008619 TGTGGTAAACTACTCACGTTTCA 57.991 39.130 0.00 0.00 36.18 2.69
97 98 5.603596 TGTGGTAAACTACTCACGTTTCAT 58.396 37.500 0.00 0.00 36.18 2.57
98 99 5.693104 TGTGGTAAACTACTCACGTTTCATC 59.307 40.000 0.00 0.00 36.18 2.92
99 100 4.919168 TGGTAAACTACTCACGTTTCATCG 59.081 41.667 0.00 0.00 36.18 3.84
100 101 4.325472 GGTAAACTACTCACGTTTCATCGG 59.675 45.833 0.00 0.00 36.18 4.18
101 102 3.928727 AACTACTCACGTTTCATCGGA 57.071 42.857 0.00 0.00 34.94 4.55
102 103 3.928727 ACTACTCACGTTTCATCGGAA 57.071 42.857 0.00 0.00 34.94 4.30
103 104 3.834610 ACTACTCACGTTTCATCGGAAG 58.165 45.455 0.00 0.00 33.82 3.46
104 105 2.080286 ACTCACGTTTCATCGGAAGG 57.920 50.000 0.00 0.00 33.82 3.46
105 106 1.337823 ACTCACGTTTCATCGGAAGGG 60.338 52.381 0.00 0.00 33.82 3.95
106 107 0.672401 TCACGTTTCATCGGAAGGGC 60.672 55.000 0.00 0.00 33.82 5.19
107 108 0.953471 CACGTTTCATCGGAAGGGCA 60.953 55.000 0.00 0.00 33.82 5.36
108 109 0.250553 ACGTTTCATCGGAAGGGCAA 60.251 50.000 0.00 0.00 33.82 4.52
109 110 1.094785 CGTTTCATCGGAAGGGCAAT 58.905 50.000 0.00 0.00 33.82 3.56
110 111 1.202177 CGTTTCATCGGAAGGGCAATG 60.202 52.381 0.00 0.00 33.82 2.82
111 112 1.134946 GTTTCATCGGAAGGGCAATGG 59.865 52.381 0.00 0.00 33.82 3.16
112 113 0.331278 TTCATCGGAAGGGCAATGGT 59.669 50.000 0.00 0.00 0.00 3.55
113 114 0.394216 TCATCGGAAGGGCAATGGTG 60.394 55.000 0.00 0.00 0.00 4.17
114 115 0.680921 CATCGGAAGGGCAATGGTGT 60.681 55.000 0.00 0.00 0.00 4.16
115 116 0.039618 ATCGGAAGGGCAATGGTGTT 59.960 50.000 0.00 0.00 0.00 3.32
116 117 0.893270 TCGGAAGGGCAATGGTGTTG 60.893 55.000 0.00 0.00 0.00 3.33
117 118 0.893270 CGGAAGGGCAATGGTGTTGA 60.893 55.000 0.00 0.00 0.00 3.18
118 119 1.560505 GGAAGGGCAATGGTGTTGAT 58.439 50.000 0.00 0.00 0.00 2.57
119 120 1.205417 GGAAGGGCAATGGTGTTGATG 59.795 52.381 0.00 0.00 0.00 3.07
120 121 1.895131 GAAGGGCAATGGTGTTGATGT 59.105 47.619 0.00 0.00 0.00 3.06
121 122 2.897271 AGGGCAATGGTGTTGATGTA 57.103 45.000 0.00 0.00 0.00 2.29
122 123 2.726821 AGGGCAATGGTGTTGATGTAG 58.273 47.619 0.00 0.00 0.00 2.74
123 124 2.308570 AGGGCAATGGTGTTGATGTAGA 59.691 45.455 0.00 0.00 0.00 2.59
124 125 3.088532 GGGCAATGGTGTTGATGTAGAA 58.911 45.455 0.00 0.00 0.00 2.10
125 126 3.129287 GGGCAATGGTGTTGATGTAGAAG 59.871 47.826 0.00 0.00 0.00 2.85
126 127 3.428045 GGCAATGGTGTTGATGTAGAAGC 60.428 47.826 0.00 0.00 0.00 3.86
127 128 3.428045 GCAATGGTGTTGATGTAGAAGCC 60.428 47.826 0.00 0.00 0.00 4.35
128 129 2.489938 TGGTGTTGATGTAGAAGCCC 57.510 50.000 0.00 0.00 0.00 5.19
129 130 1.985159 TGGTGTTGATGTAGAAGCCCT 59.015 47.619 0.00 0.00 0.00 5.19
130 131 2.027192 TGGTGTTGATGTAGAAGCCCTC 60.027 50.000 0.00 0.00 0.00 4.30
131 132 2.633488 GTGTTGATGTAGAAGCCCTCC 58.367 52.381 0.00 0.00 0.00 4.30
132 133 1.207089 TGTTGATGTAGAAGCCCTCCG 59.793 52.381 0.00 0.00 0.00 4.63
133 134 1.207329 GTTGATGTAGAAGCCCTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
134 135 0.824109 TGATGTAGAAGCCCTCCGTG 59.176 55.000 0.00 0.00 0.00 4.94
135 136 1.112113 GATGTAGAAGCCCTCCGTGA 58.888 55.000 0.00 0.00 0.00 4.35
136 137 1.689273 GATGTAGAAGCCCTCCGTGAT 59.311 52.381 0.00 0.00 0.00 3.06
137 138 1.112113 TGTAGAAGCCCTCCGTGATC 58.888 55.000 0.00 0.00 0.00 2.92
138 139 0.030908 GTAGAAGCCCTCCGTGATCG 59.969 60.000 0.00 0.00 0.00 3.69
139 140 0.106868 TAGAAGCCCTCCGTGATCGA 60.107 55.000 0.00 0.00 39.71 3.59
140 141 0.970937 AGAAGCCCTCCGTGATCGAA 60.971 55.000 0.00 0.00 39.71 3.71
141 142 0.105039 GAAGCCCTCCGTGATCGAAT 59.895 55.000 0.00 0.00 39.71 3.34
142 143 0.105039 AAGCCCTCCGTGATCGAATC 59.895 55.000 0.00 0.00 39.71 2.52
143 144 1.301009 GCCCTCCGTGATCGAATCC 60.301 63.158 0.00 0.00 39.71 3.01
144 145 1.367840 CCCTCCGTGATCGAATCCC 59.632 63.158 0.00 0.00 39.71 3.85
145 146 1.367840 CCTCCGTGATCGAATCCCC 59.632 63.158 0.00 0.00 39.71 4.81
146 147 1.367840 CTCCGTGATCGAATCCCCC 59.632 63.158 0.00 0.00 39.71 5.40
147 148 1.075525 TCCGTGATCGAATCCCCCT 60.076 57.895 0.00 0.00 39.71 4.79
148 149 1.113517 TCCGTGATCGAATCCCCCTC 61.114 60.000 0.00 0.00 39.71 4.30
149 150 1.367840 CGTGATCGAATCCCCCTCC 59.632 63.158 0.00 0.00 39.71 4.30
150 151 1.399744 CGTGATCGAATCCCCCTCCA 61.400 60.000 0.00 0.00 39.71 3.86
151 152 0.394565 GTGATCGAATCCCCCTCCAG 59.605 60.000 0.00 0.00 0.00 3.86
152 153 1.373059 GATCGAATCCCCCTCCAGC 59.627 63.158 0.00 0.00 0.00 4.85
153 154 1.384502 ATCGAATCCCCCTCCAGCA 60.385 57.895 0.00 0.00 0.00 4.41
154 155 1.414061 ATCGAATCCCCCTCCAGCAG 61.414 60.000 0.00 0.00 0.00 4.24
155 156 2.922234 GAATCCCCCTCCAGCAGG 59.078 66.667 0.00 0.00 43.01 4.85
163 164 4.069232 CTCCAGCAGGACGCCGAA 62.069 66.667 0.00 0.00 44.04 4.30
164 165 3.589654 CTCCAGCAGGACGCCGAAA 62.590 63.158 0.00 0.00 44.04 3.46
165 166 2.668212 CCAGCAGGACGCCGAAAA 60.668 61.111 0.00 0.00 44.04 2.29
166 167 2.258013 CCAGCAGGACGCCGAAAAA 61.258 57.895 0.00 0.00 44.04 1.94
189 190 1.865865 CCGTAAATGGGATCTCACGG 58.134 55.000 7.85 7.85 42.41 4.94
190 191 1.540363 CCGTAAATGGGATCTCACGGG 60.540 57.143 13.24 0.47 43.90 5.28
191 192 1.138266 CGTAAATGGGATCTCACGGGT 59.862 52.381 0.00 0.00 0.00 5.28
192 193 2.363038 CGTAAATGGGATCTCACGGGTA 59.637 50.000 0.00 0.00 0.00 3.69
193 194 3.725490 GTAAATGGGATCTCACGGGTAC 58.275 50.000 0.00 0.00 0.00 3.34
194 195 1.874129 AATGGGATCTCACGGGTACA 58.126 50.000 0.00 0.00 0.00 2.90
195 196 1.874129 ATGGGATCTCACGGGTACAA 58.126 50.000 0.00 0.00 0.00 2.41
196 197 1.646912 TGGGATCTCACGGGTACAAA 58.353 50.000 0.00 0.00 0.00 2.83
197 198 1.979308 TGGGATCTCACGGGTACAAAA 59.021 47.619 0.00 0.00 0.00 2.44
198 199 2.574369 TGGGATCTCACGGGTACAAAAT 59.426 45.455 0.00 0.00 0.00 1.82
199 200 2.943033 GGGATCTCACGGGTACAAAATG 59.057 50.000 0.00 0.00 0.00 2.32
200 201 3.606687 GGATCTCACGGGTACAAAATGT 58.393 45.455 0.00 0.00 0.00 2.71
201 202 4.007659 GGATCTCACGGGTACAAAATGTT 58.992 43.478 0.00 0.00 0.00 2.71
202 203 4.142687 GGATCTCACGGGTACAAAATGTTG 60.143 45.833 0.00 0.00 40.84 3.33
203 204 2.550606 TCTCACGGGTACAAAATGTTGC 59.449 45.455 0.00 0.00 38.39 4.17
204 205 1.264557 TCACGGGTACAAAATGTTGCG 59.735 47.619 0.00 0.00 38.39 4.85
205 206 0.594110 ACGGGTACAAAATGTTGCGG 59.406 50.000 0.00 0.00 38.39 5.69
206 207 0.731174 CGGGTACAAAATGTTGCGGC 60.731 55.000 0.00 0.00 38.39 6.53
207 208 0.315568 GGGTACAAAATGTTGCGGCA 59.684 50.000 0.00 0.00 38.39 5.69
208 209 1.668628 GGGTACAAAATGTTGCGGCAG 60.669 52.381 1.67 0.00 38.39 4.85
209 210 1.059942 GTACAAAATGTTGCGGCAGC 58.940 50.000 10.09 10.09 45.41 5.25
219 220 2.331451 GCGGCAGCGAAAAAGTGT 59.669 55.556 0.00 0.00 0.00 3.55
220 221 1.299089 GCGGCAGCGAAAAAGTGTT 60.299 52.632 0.00 0.00 0.00 3.32
221 222 0.869880 GCGGCAGCGAAAAAGTGTTT 60.870 50.000 0.00 0.00 0.00 2.83
222 223 1.555477 CGGCAGCGAAAAAGTGTTTT 58.445 45.000 0.00 0.00 39.70 2.43
223 224 1.923864 CGGCAGCGAAAAAGTGTTTTT 59.076 42.857 0.00 0.00 44.93 1.94
224 225 3.109619 CGGCAGCGAAAAAGTGTTTTTA 58.890 40.909 0.00 0.00 42.51 1.52
225 226 3.733727 CGGCAGCGAAAAAGTGTTTTTAT 59.266 39.130 0.00 0.00 42.51 1.40
226 227 4.912766 CGGCAGCGAAAAAGTGTTTTTATA 59.087 37.500 0.00 0.00 42.51 0.98
227 228 5.059221 CGGCAGCGAAAAAGTGTTTTTATAG 59.941 40.000 0.00 0.00 42.51 1.31
228 229 6.146898 GGCAGCGAAAAAGTGTTTTTATAGA 58.853 36.000 0.00 0.00 42.51 1.98
229 230 6.806739 GGCAGCGAAAAAGTGTTTTTATAGAT 59.193 34.615 0.00 0.00 42.51 1.98
230 231 7.201350 GGCAGCGAAAAAGTGTTTTTATAGATG 60.201 37.037 0.00 3.82 42.51 2.90
231 232 7.657364 CAGCGAAAAAGTGTTTTTATAGATGC 58.343 34.615 0.00 0.00 42.51 3.91
232 233 6.806739 AGCGAAAAAGTGTTTTTATAGATGCC 59.193 34.615 0.00 0.00 42.51 4.40
233 234 6.034577 GCGAAAAAGTGTTTTTATAGATGCCC 59.965 38.462 0.00 0.00 42.51 5.36
234 235 6.530181 CGAAAAAGTGTTTTTATAGATGCCCC 59.470 38.462 0.00 0.00 42.51 5.80
235 236 7.553504 AAAAAGTGTTTTTATAGATGCCCCT 57.446 32.000 0.00 0.00 40.80 4.79
236 237 6.530019 AAAGTGTTTTTATAGATGCCCCTG 57.470 37.500 0.00 0.00 0.00 4.45
237 238 5.193099 AGTGTTTTTATAGATGCCCCTGT 57.807 39.130 0.00 0.00 0.00 4.00
238 239 5.580022 AGTGTTTTTATAGATGCCCCTGTT 58.420 37.500 0.00 0.00 0.00 3.16
239 240 6.016555 AGTGTTTTTATAGATGCCCCTGTTT 58.983 36.000 0.00 0.00 0.00 2.83
240 241 6.071391 AGTGTTTTTATAGATGCCCCTGTTTG 60.071 38.462 0.00 0.00 0.00 2.93
241 242 5.186797 TGTTTTTATAGATGCCCCTGTTTGG 59.813 40.000 0.00 0.00 0.00 3.28
242 243 4.601406 TTTATAGATGCCCCTGTTTGGT 57.399 40.909 0.00 0.00 0.00 3.67
243 244 4.601406 TTATAGATGCCCCTGTTTGGTT 57.399 40.909 0.00 0.00 0.00 3.67
244 245 2.990740 TAGATGCCCCTGTTTGGTTT 57.009 45.000 0.00 0.00 0.00 3.27
245 246 1.341080 AGATGCCCCTGTTTGGTTTG 58.659 50.000 0.00 0.00 0.00 2.93
246 247 0.321346 GATGCCCCTGTTTGGTTTGG 59.679 55.000 0.00 0.00 0.00 3.28
247 248 1.126948 ATGCCCCTGTTTGGTTTGGG 61.127 55.000 0.00 0.00 39.37 4.12
250 251 2.436521 CCCTGTTTGGTTTGGGGAC 58.563 57.895 0.00 0.00 39.42 4.46
251 252 0.397816 CCCTGTTTGGTTTGGGGACA 60.398 55.000 0.00 0.00 39.42 4.02
252 253 1.715785 CCTGTTTGGTTTGGGGACAT 58.284 50.000 0.00 0.00 42.32 3.06
253 254 2.491825 CCCTGTTTGGTTTGGGGACATA 60.492 50.000 0.00 0.00 42.32 2.29
254 255 3.440127 CCTGTTTGGTTTGGGGACATAT 58.560 45.455 0.00 0.00 42.32 1.78
255 256 3.195396 CCTGTTTGGTTTGGGGACATATG 59.805 47.826 0.00 0.00 42.32 1.78
256 257 4.085733 CTGTTTGGTTTGGGGACATATGA 58.914 43.478 10.38 0.00 42.32 2.15
257 258 4.483950 TGTTTGGTTTGGGGACATATGAA 58.516 39.130 10.38 0.00 42.32 2.57
258 259 4.901849 TGTTTGGTTTGGGGACATATGAAA 59.098 37.500 10.38 0.00 42.32 2.69
259 260 5.366768 TGTTTGGTTTGGGGACATATGAAAA 59.633 36.000 10.38 0.00 42.32 2.29
260 261 6.043706 TGTTTGGTTTGGGGACATATGAAAAT 59.956 34.615 10.38 0.00 42.32 1.82
261 262 7.235606 TGTTTGGTTTGGGGACATATGAAAATA 59.764 33.333 10.38 0.00 42.32 1.40
262 263 7.986553 TTGGTTTGGGGACATATGAAAATAT 57.013 32.000 10.38 0.00 42.32 1.28
263 264 9.494055 TTTGGTTTGGGGACATATGAAAATATA 57.506 29.630 10.38 0.00 42.32 0.86
264 265 9.667607 TTGGTTTGGGGACATATGAAAATATAT 57.332 29.630 10.38 0.00 42.32 0.86
269 270 9.884636 TTGGGGACATATGAAAATATATAGACG 57.115 33.333 10.38 0.00 42.32 4.18
270 271 9.262240 TGGGGACATATGAAAATATATAGACGA 57.738 33.333 10.38 0.00 33.40 4.20
286 287 6.978674 ATAGACGAAAGGATTATGTCAGGA 57.021 37.500 0.00 0.00 32.08 3.86
287 288 5.269505 AGACGAAAGGATTATGTCAGGAG 57.730 43.478 0.00 0.00 32.08 3.69
288 289 4.712337 AGACGAAAGGATTATGTCAGGAGT 59.288 41.667 0.00 0.00 32.08 3.85
289 290 5.187967 AGACGAAAGGATTATGTCAGGAGTT 59.812 40.000 0.00 0.00 32.08 3.01
290 291 5.805728 ACGAAAGGATTATGTCAGGAGTTT 58.194 37.500 0.00 0.00 0.00 2.66
291 292 5.643777 ACGAAAGGATTATGTCAGGAGTTTG 59.356 40.000 0.00 0.00 0.00 2.93
292 293 5.447818 CGAAAGGATTATGTCAGGAGTTTGC 60.448 44.000 0.00 0.00 0.00 3.68
293 294 4.574674 AGGATTATGTCAGGAGTTTGCA 57.425 40.909 0.00 0.00 0.00 4.08
294 295 5.121380 AGGATTATGTCAGGAGTTTGCAT 57.879 39.130 0.00 0.00 0.00 3.96
295 296 4.885907 AGGATTATGTCAGGAGTTTGCATG 59.114 41.667 0.00 0.00 0.00 4.06
296 297 4.498682 GGATTATGTCAGGAGTTTGCATGC 60.499 45.833 11.82 11.82 0.00 4.06
297 298 2.211250 ATGTCAGGAGTTTGCATGCT 57.789 45.000 20.33 0.00 0.00 3.79
298 299 1.241165 TGTCAGGAGTTTGCATGCTG 58.759 50.000 20.33 6.89 37.45 4.41
299 300 1.242076 GTCAGGAGTTTGCATGCTGT 58.758 50.000 20.33 0.00 37.39 4.40
300 301 1.198637 GTCAGGAGTTTGCATGCTGTC 59.801 52.381 20.33 9.65 37.39 3.51
301 302 1.072806 TCAGGAGTTTGCATGCTGTCT 59.927 47.619 20.33 13.39 37.39 3.41
302 303 2.302733 TCAGGAGTTTGCATGCTGTCTA 59.697 45.455 20.33 0.00 37.39 2.59
303 304 2.676839 CAGGAGTTTGCATGCTGTCTAG 59.323 50.000 20.33 4.51 32.03 2.43
317 318 4.103365 CTGTCTAGCAAAGATGACGTCT 57.897 45.455 17.92 1.84 39.43 4.18
318 319 4.098055 TGTCTAGCAAAGATGACGTCTC 57.902 45.455 17.92 11.55 35.67 3.36
319 320 3.102276 GTCTAGCAAAGATGACGTCTCG 58.898 50.000 17.92 0.00 35.67 4.04
320 321 2.097629 TCTAGCAAAGATGACGTCTCGG 59.902 50.000 17.92 8.14 35.67 4.63
321 322 0.603569 AGCAAAGATGACGTCTCGGT 59.396 50.000 17.92 0.00 35.67 4.69
322 323 0.992802 GCAAAGATGACGTCTCGGTC 59.007 55.000 17.92 9.54 35.67 4.79
323 324 1.402984 GCAAAGATGACGTCTCGGTCT 60.403 52.381 17.92 11.58 35.67 3.85
324 325 2.927014 GCAAAGATGACGTCTCGGTCTT 60.927 50.000 17.92 16.32 35.67 3.01
366 367 2.298729 CCTTCCTTTCCCGCAAAAATGA 59.701 45.455 0.00 0.00 0.00 2.57
373 374 1.611491 TCCCGCAAAAATGAACCACTC 59.389 47.619 0.00 0.00 0.00 3.51
374 375 1.336795 CCCGCAAAAATGAACCACTCC 60.337 52.381 0.00 0.00 0.00 3.85
375 376 1.339610 CCGCAAAAATGAACCACTCCA 59.660 47.619 0.00 0.00 0.00 3.86
376 377 2.223923 CCGCAAAAATGAACCACTCCAA 60.224 45.455 0.00 0.00 0.00 3.53
377 378 3.052036 CGCAAAAATGAACCACTCCAAG 58.948 45.455 0.00 0.00 0.00 3.61
378 379 3.490761 CGCAAAAATGAACCACTCCAAGT 60.491 43.478 0.00 0.00 0.00 3.16
379 380 4.051237 GCAAAAATGAACCACTCCAAGTC 58.949 43.478 0.00 0.00 0.00 3.01
380 381 4.620982 CAAAAATGAACCACTCCAAGTCC 58.379 43.478 0.00 0.00 0.00 3.85
436 444 9.740710 ACTATTGCAATAAATATTACTCCTCCC 57.259 33.333 19.32 0.00 0.00 4.30
437 445 9.965902 CTATTGCAATAAATATTACTCCTCCCT 57.034 33.333 19.32 0.00 0.00 4.20
438 446 8.870075 ATTGCAATAAATATTACTCCTCCCTC 57.130 34.615 11.02 0.00 0.00 4.30
439 447 6.779860 TGCAATAAATATTACTCCTCCCTCC 58.220 40.000 0.00 0.00 0.00 4.30
440 448 6.331572 TGCAATAAATATTACTCCTCCCTCCA 59.668 38.462 0.00 0.00 0.00 3.86
441 449 7.018550 TGCAATAAATATTACTCCTCCCTCCAT 59.981 37.037 0.00 0.00 0.00 3.41
442 450 7.554476 GCAATAAATATTACTCCTCCCTCCATC 59.446 40.741 0.00 0.00 0.00 3.51
443 451 8.605947 CAATAAATATTACTCCTCCCTCCATCA 58.394 37.037 0.00 0.00 0.00 3.07
444 452 6.441088 AAATATTACTCCTCCCTCCATCAC 57.559 41.667 0.00 0.00 0.00 3.06
445 453 2.940514 TTACTCCTCCCTCCATCACA 57.059 50.000 0.00 0.00 0.00 3.58
446 454 2.940514 TACTCCTCCCTCCATCACAA 57.059 50.000 0.00 0.00 0.00 3.33
447 455 2.044793 ACTCCTCCCTCCATCACAAA 57.955 50.000 0.00 0.00 0.00 2.83
448 456 2.348472 ACTCCTCCCTCCATCACAAAA 58.652 47.619 0.00 0.00 0.00 2.44
449 457 2.922283 ACTCCTCCCTCCATCACAAAAT 59.078 45.455 0.00 0.00 0.00 1.82
450 458 4.111577 ACTCCTCCCTCCATCACAAAATA 58.888 43.478 0.00 0.00 0.00 1.40
451 459 4.540099 ACTCCTCCCTCCATCACAAAATAA 59.460 41.667 0.00 0.00 0.00 1.40
452 460 5.194537 ACTCCTCCCTCCATCACAAAATAAT 59.805 40.000 0.00 0.00 0.00 1.28
453 461 6.091076 TCCTCCCTCCATCACAAAATAATT 57.909 37.500 0.00 0.00 0.00 1.40
454 462 5.893255 TCCTCCCTCCATCACAAAATAATTG 59.107 40.000 0.00 0.00 0.00 2.32
455 463 5.893255 CCTCCCTCCATCACAAAATAATTGA 59.107 40.000 0.00 0.00 0.00 2.57
456 464 6.183360 CCTCCCTCCATCACAAAATAATTGAC 60.183 42.308 0.00 0.00 0.00 3.18
457 465 6.493166 TCCCTCCATCACAAAATAATTGACT 58.507 36.000 0.00 0.00 0.00 3.41
458 466 6.953520 TCCCTCCATCACAAAATAATTGACTT 59.046 34.615 0.00 0.00 0.00 3.01
459 467 8.112822 TCCCTCCATCACAAAATAATTGACTTA 58.887 33.333 0.00 0.00 0.00 2.24
460 468 8.748412 CCCTCCATCACAAAATAATTGACTTAA 58.252 33.333 0.00 0.00 0.00 1.85
461 469 9.793252 CCTCCATCACAAAATAATTGACTTAAG 57.207 33.333 0.00 0.00 0.00 1.85
550 558 1.584175 GACTCATGCATCCTCAGCAG 58.416 55.000 0.00 0.00 46.36 4.24
554 562 1.134491 TCATGCATCCTCAGCAGTCAG 60.134 52.381 0.00 0.00 46.36 3.51
592 605 0.248215 CATGCTTCGATTTGCCGACC 60.248 55.000 0.00 0.00 38.39 4.79
597 610 0.953471 TTCGATTTGCCGACCACTGG 60.953 55.000 0.00 0.00 38.39 4.00
857 909 2.202260 GCGACGACGATGACGACA 60.202 61.111 12.29 0.00 42.66 4.35
860 912 1.708375 CGACGACGATGACGACAACG 61.708 60.000 14.99 14.99 45.33 4.10
863 915 0.723459 CGACGATGACGACAACGACA 60.723 55.000 22.16 0.00 45.90 4.35
905 960 3.536956 TCAACCTAAGCAGATAACCGG 57.463 47.619 0.00 0.00 0.00 5.28
906 961 2.835764 TCAACCTAAGCAGATAACCGGT 59.164 45.455 0.00 0.00 0.00 5.28
974 1031 0.804989 CAGCTTTCCATCGGGACAAC 59.195 55.000 0.00 0.00 44.89 3.32
1017 1106 1.031235 CAATGGCGGCAATCATGGTA 58.969 50.000 18.31 0.00 0.00 3.25
1062 1151 1.806623 GCTATGGCGACCGTCATCTTT 60.807 52.381 13.00 0.00 39.93 2.52
1221 1310 1.080705 CGACTTCTTCCTCGCCGTT 60.081 57.895 0.00 0.00 0.00 4.44
1815 1904 2.354805 GGCCAACTTCCTTGACTACGAT 60.355 50.000 0.00 0.00 30.42 3.73
1968 2057 2.377136 GGACAAGAAGGCCTCTGGA 58.623 57.895 5.23 0.00 44.70 3.86
2076 2165 1.134367 CTCAACTTCATCGACGGGCTA 59.866 52.381 0.00 0.00 0.00 3.93
2175 2264 1.134280 CGAGGAAGGATGGACAAGCAT 60.134 52.381 0.00 0.00 0.00 3.79
2214 2303 0.606673 GCTTCGAGGGCTTCAAGGTT 60.607 55.000 0.00 0.00 0.00 3.50
2217 2306 1.933021 TCGAGGGCTTCAAGGTTCTA 58.067 50.000 0.00 0.00 0.00 2.10
2316 2405 1.091771 CCGCCGATGTTGCAGAGAAT 61.092 55.000 0.00 0.00 0.00 2.40
2364 2453 2.820197 GAGGGACCCTGATTTGTGTTTC 59.180 50.000 20.90 0.00 31.76 2.78
2402 2491 0.964358 CTCAAGCAGGCCAAGGAAGG 60.964 60.000 5.01 0.00 0.00 3.46
2502 2597 1.000955 GAGACGGAGGTGAAGAAAGCA 59.999 52.381 0.00 0.00 0.00 3.91
2580 2676 4.696479 AGAAGGTGACAAGTGAAGTGAT 57.304 40.909 0.00 0.00 0.00 3.06
2582 2678 5.542779 AGAAGGTGACAAGTGAAGTGATAC 58.457 41.667 0.00 0.00 0.00 2.24
2675 2788 8.451748 GGTCACAGAAAATATAAACTCTCAACC 58.548 37.037 0.00 0.00 0.00 3.77
2692 2806 7.606456 ACTCTCAACCGAAATATTATGTGTTGT 59.394 33.333 14.49 0.85 34.68 3.32
2722 3600 7.018550 TCTCATTTGTAATATCTGCCCCCTTAT 59.981 37.037 0.00 0.00 0.00 1.73
2723 3601 8.225863 TCATTTGTAATATCTGCCCCCTTATA 57.774 34.615 0.00 0.00 0.00 0.98
2733 3611 6.665992 TCTGCCCCCTTATATATATAAGCG 57.334 41.667 27.06 21.45 42.28 4.68
2734 3612 5.011738 TCTGCCCCCTTATATATATAAGCGC 59.988 44.000 27.06 25.26 42.28 5.92
2736 3614 6.079336 TGCCCCCTTATATATATAAGCGCTA 58.921 40.000 27.06 17.58 42.28 4.26
2737 3615 6.729100 TGCCCCCTTATATATATAAGCGCTAT 59.271 38.462 27.06 2.66 42.28 2.97
2739 3617 7.764901 GCCCCCTTATATATATAAGCGCTATTC 59.235 40.741 27.06 13.51 42.28 1.75
2740 3618 7.974501 CCCCCTTATATATATAAGCGCTATTCG 59.025 40.741 27.06 15.67 42.28 3.34
2741 3619 8.521176 CCCCTTATATATATAAGCGCTATTCGT 58.479 37.037 27.06 0.00 42.28 3.85
2742 3620 9.909644 CCCTTATATATATAAGCGCTATTCGTT 57.090 33.333 27.06 0.00 42.28 3.85
2745 3623 9.903682 TTATATATATAAGCGCTATTCGTTCCC 57.096 33.333 12.05 0.00 41.07 3.97
2748 3626 0.462047 AAGCGCTATTCGTTCCCCTG 60.462 55.000 12.05 0.00 41.07 4.45
2749 3627 1.887707 GCGCTATTCGTTCCCCTGG 60.888 63.158 0.00 0.00 41.07 4.45
2750 3628 1.227556 CGCTATTCGTTCCCCTGGG 60.228 63.158 5.50 5.50 0.00 4.45
2752 3630 0.463833 GCTATTCGTTCCCCTGGGTG 60.464 60.000 12.71 3.30 36.47 4.61
2753 3631 1.200519 CTATTCGTTCCCCTGGGTGA 58.799 55.000 12.71 5.89 36.47 4.02
2754 3632 1.139058 CTATTCGTTCCCCTGGGTGAG 59.861 57.143 12.71 0.00 36.47 3.51
2757 3635 0.765135 TCGTTCCCCTGGGTGAGAAA 60.765 55.000 12.71 0.00 36.47 2.52
2758 3636 0.328258 CGTTCCCCTGGGTGAGAAAT 59.672 55.000 12.71 0.00 36.47 2.17
2759 3637 1.557832 CGTTCCCCTGGGTGAGAAATA 59.442 52.381 12.71 0.00 36.47 1.40
2760 3638 2.420129 CGTTCCCCTGGGTGAGAAATAG 60.420 54.545 12.71 0.53 36.47 1.73
2761 3639 2.576648 GTTCCCCTGGGTGAGAAATAGT 59.423 50.000 12.71 0.00 36.47 2.12
2762 3640 2.929301 TCCCCTGGGTGAGAAATAGTT 58.071 47.619 12.71 0.00 36.47 2.24
2763 3641 4.083080 TCCCCTGGGTGAGAAATAGTTA 57.917 45.455 12.71 0.00 36.47 2.24
2764 3642 4.641868 TCCCCTGGGTGAGAAATAGTTAT 58.358 43.478 12.71 0.00 36.47 1.89
2765 3643 5.043762 TCCCCTGGGTGAGAAATAGTTATT 58.956 41.667 12.71 0.00 36.47 1.40
2766 3644 5.132144 TCCCCTGGGTGAGAAATAGTTATTC 59.868 44.000 12.71 0.00 36.47 1.75
2767 3645 5.132816 CCCCTGGGTGAGAAATAGTTATTCT 59.867 44.000 12.71 0.00 39.76 2.40
2768 3646 6.353951 CCCCTGGGTGAGAAATAGTTATTCTT 60.354 42.308 12.71 0.00 37.26 2.52
2769 3647 6.768381 CCCTGGGTGAGAAATAGTTATTCTTC 59.232 42.308 3.97 0.00 37.26 2.87
2770 3648 7.338710 CCTGGGTGAGAAATAGTTATTCTTCA 58.661 38.462 0.00 0.00 37.26 3.02
2771 3649 7.281100 CCTGGGTGAGAAATAGTTATTCTTCAC 59.719 40.741 14.23 14.23 37.26 3.18
2772 3650 7.110155 TGGGTGAGAAATAGTTATTCTTCACC 58.890 38.462 23.30 23.30 45.88 4.02
2773 3651 7.555306 GGTGAGAAATAGTTATTCTTCACCC 57.445 40.000 22.15 12.96 43.85 4.61
2774 3652 7.110155 GGTGAGAAATAGTTATTCTTCACCCA 58.890 38.462 22.15 2.77 43.85 4.51
2775 3653 7.775561 GGTGAGAAATAGTTATTCTTCACCCAT 59.224 37.037 22.15 0.00 43.85 4.00
2776 3654 9.178758 GTGAGAAATAGTTATTCTTCACCCATT 57.821 33.333 12.81 0.00 37.26 3.16
2777 3655 9.753674 TGAGAAATAGTTATTCTTCACCCATTT 57.246 29.630 0.00 0.00 37.26 2.32
2785 3663 9.981460 AGTTATTCTTCACCCATTTTCTATTCT 57.019 29.630 0.00 0.00 0.00 2.40
2787 3665 9.973661 TTATTCTTCACCCATTTTCTATTCTGA 57.026 29.630 0.00 0.00 0.00 3.27
2788 3666 7.687941 TTCTTCACCCATTTTCTATTCTGAC 57.312 36.000 0.00 0.00 0.00 3.51
2789 3667 7.020827 TCTTCACCCATTTTCTATTCTGACT 57.979 36.000 0.00 0.00 0.00 3.41
2790 3668 7.461749 TCTTCACCCATTTTCTATTCTGACTT 58.538 34.615 0.00 0.00 0.00 3.01
2791 3669 7.607991 TCTTCACCCATTTTCTATTCTGACTTC 59.392 37.037 0.00 0.00 0.00 3.01
2792 3670 6.778821 TCACCCATTTTCTATTCTGACTTCA 58.221 36.000 0.00 0.00 0.00 3.02
2793 3671 7.230747 TCACCCATTTTCTATTCTGACTTCAA 58.769 34.615 0.00 0.00 0.00 2.69
2794 3672 7.890127 TCACCCATTTTCTATTCTGACTTCAAT 59.110 33.333 0.00 0.00 0.00 2.57
2795 3673 7.972277 CACCCATTTTCTATTCTGACTTCAATG 59.028 37.037 0.00 0.00 0.00 2.82
2796 3674 6.976925 CCCATTTTCTATTCTGACTTCAATGC 59.023 38.462 0.00 0.00 0.00 3.56
2797 3675 7.363181 CCCATTTTCTATTCTGACTTCAATGCA 60.363 37.037 0.00 0.00 0.00 3.96
2798 3676 8.195436 CCATTTTCTATTCTGACTTCAATGCAT 58.805 33.333 0.00 0.00 0.00 3.96
2799 3677 9.234384 CATTTTCTATTCTGACTTCAATGCATC 57.766 33.333 0.00 0.00 0.00 3.91
2800 3678 6.594284 TTCTATTCTGACTTCAATGCATCG 57.406 37.500 0.00 0.00 0.00 3.84
2801 3679 5.664457 TCTATTCTGACTTCAATGCATCGT 58.336 37.500 0.00 0.00 0.00 3.73
2802 3680 6.805713 TCTATTCTGACTTCAATGCATCGTA 58.194 36.000 0.00 0.00 0.00 3.43
2803 3681 7.436933 TCTATTCTGACTTCAATGCATCGTAT 58.563 34.615 0.00 0.00 0.00 3.06
2804 3682 6.932356 ATTCTGACTTCAATGCATCGTATT 57.068 33.333 0.00 0.00 0.00 1.89
2805 3683 6.741992 TTCTGACTTCAATGCATCGTATTT 57.258 33.333 0.00 0.00 0.00 1.40
2806 3684 6.741992 TCTGACTTCAATGCATCGTATTTT 57.258 33.333 0.00 0.00 0.00 1.82
2807 3685 7.144722 TCTGACTTCAATGCATCGTATTTTT 57.855 32.000 0.00 0.00 0.00 1.94
2808 3686 8.262715 TCTGACTTCAATGCATCGTATTTTTA 57.737 30.769 0.00 0.00 0.00 1.52
2809 3687 8.175069 TCTGACTTCAATGCATCGTATTTTTAC 58.825 33.333 0.00 0.00 0.00 2.01
2810 3688 7.811653 TGACTTCAATGCATCGTATTTTTACA 58.188 30.769 0.00 0.00 0.00 2.41
2811 3689 8.458052 TGACTTCAATGCATCGTATTTTTACAT 58.542 29.630 0.00 0.00 0.00 2.29
2812 3690 9.289303 GACTTCAATGCATCGTATTTTTACATT 57.711 29.630 0.00 0.00 0.00 2.71
2813 3691 9.638239 ACTTCAATGCATCGTATTTTTACATTT 57.362 25.926 0.00 0.00 0.00 2.32
2815 3693 8.321678 TCAATGCATCGTATTTTTACATTTCG 57.678 30.769 0.00 0.00 0.00 3.46
2816 3694 7.965655 TCAATGCATCGTATTTTTACATTTCGT 59.034 29.630 0.00 0.00 0.00 3.85
2817 3695 9.216087 CAATGCATCGTATTTTTACATTTCGTA 57.784 29.630 0.00 0.00 0.00 3.43
2818 3696 9.776158 AATGCATCGTATTTTTACATTTCGTAA 57.224 25.926 0.00 0.00 38.33 3.18
2819 3697 9.776158 ATGCATCGTATTTTTACATTTCGTAAA 57.224 25.926 0.00 0.00 46.09 2.01
2820 3698 9.776158 TGCATCGTATTTTTACATTTCGTAAAT 57.224 25.926 0.00 0.00 46.77 1.40
2834 3712 9.482627 ACATTTCGTAAATTTTGCCTTATTTCA 57.517 25.926 0.00 0.00 0.00 2.69
2923 3801 9.372541 ACGAATGTAAAAACATAGTGTAAAACG 57.627 29.630 0.00 0.00 0.00 3.60
2924 3802 9.372541 CGAATGTAAAAACATAGTGTAAAACGT 57.627 29.630 0.00 0.00 0.00 3.99
2946 3824 8.964420 ACGTACATAAAATGTGATTTTTCTGG 57.036 30.769 2.83 0.00 44.60 3.86
2947 3825 8.573035 ACGTACATAAAATGTGATTTTTCTGGT 58.427 29.630 2.83 0.00 44.60 4.00
2948 3826 9.061610 CGTACATAAAATGTGATTTTTCTGGTC 57.938 33.333 2.83 0.00 44.60 4.02
2957 3835 9.533831 AATGTGATTTTTCTGGTCTTATAACCT 57.466 29.630 0.00 0.00 40.20 3.50
3015 3893 9.835389 ATTAAACCAATATGCATGCAACTATTT 57.165 25.926 26.68 20.31 0.00 1.40
3061 3939 9.477484 TTTAGAAAGCGATCATAAGATTACCTC 57.523 33.333 0.00 0.00 33.72 3.85
3062 3940 6.153067 AGAAAGCGATCATAAGATTACCTCG 58.847 40.000 0.00 0.00 33.72 4.63
3063 3941 4.442375 AGCGATCATAAGATTACCTCGG 57.558 45.455 0.00 0.00 33.72 4.63
3064 3942 3.193691 AGCGATCATAAGATTACCTCGGG 59.806 47.826 0.00 0.00 33.72 5.14
3065 3943 3.056749 GCGATCATAAGATTACCTCGGGT 60.057 47.826 0.00 1.14 35.50 5.28
3066 3944 4.486090 CGATCATAAGATTACCTCGGGTG 58.514 47.826 5.90 0.00 33.92 4.61
3067 3945 4.217767 CGATCATAAGATTACCTCGGGTGA 59.782 45.833 5.90 0.00 33.92 4.02
3068 3946 5.278808 CGATCATAAGATTACCTCGGGTGAA 60.279 44.000 5.90 0.00 33.92 3.18
3069 3947 5.531122 TCATAAGATTACCTCGGGTGAAG 57.469 43.478 5.90 0.00 36.19 3.02
3070 3948 5.205821 TCATAAGATTACCTCGGGTGAAGA 58.794 41.667 5.90 0.00 36.19 2.87
3071 3949 5.659525 TCATAAGATTACCTCGGGTGAAGAA 59.340 40.000 5.90 0.00 36.19 2.52
3072 3950 6.326583 TCATAAGATTACCTCGGGTGAAGAAT 59.673 38.462 5.90 0.00 36.19 2.40
3073 3951 7.507956 TCATAAGATTACCTCGGGTGAAGAATA 59.492 37.037 5.90 0.00 36.19 1.75
3074 3952 6.555463 AAGATTACCTCGGGTGAAGAATAA 57.445 37.500 5.90 0.00 36.19 1.40
3075 3953 6.555463 AGATTACCTCGGGTGAAGAATAAA 57.445 37.500 5.90 0.00 36.19 1.40
3076 3954 7.138054 AGATTACCTCGGGTGAAGAATAAAT 57.862 36.000 5.90 0.00 36.19 1.40
3077 3955 7.574607 AGATTACCTCGGGTGAAGAATAAATT 58.425 34.615 5.90 0.00 36.19 1.82
3078 3956 8.711170 AGATTACCTCGGGTGAAGAATAAATTA 58.289 33.333 5.90 0.00 36.19 1.40
3079 3957 9.503399 GATTACCTCGGGTGAAGAATAAATTAT 57.497 33.333 5.90 0.00 36.19 1.28
3080 3958 9.862149 ATTACCTCGGGTGAAGAATAAATTATT 57.138 29.630 0.00 0.00 36.19 1.40
3081 3959 7.568199 ACCTCGGGTGAAGAATAAATTATTG 57.432 36.000 2.58 0.00 32.98 1.90
3082 3960 7.116736 ACCTCGGGTGAAGAATAAATTATTGT 58.883 34.615 2.58 0.00 32.98 2.71
3083 3961 7.067008 ACCTCGGGTGAAGAATAAATTATTGTG 59.933 37.037 2.58 0.00 32.98 3.33
3084 3962 6.791303 TCGGGTGAAGAATAAATTATTGTGC 58.209 36.000 2.58 0.00 0.00 4.57
3085 3963 6.375736 TCGGGTGAAGAATAAATTATTGTGCA 59.624 34.615 2.58 1.12 0.00 4.57
3086 3964 7.068103 TCGGGTGAAGAATAAATTATTGTGCAT 59.932 33.333 6.80 0.00 30.62 3.96
3087 3965 7.379529 CGGGTGAAGAATAAATTATTGTGCATC 59.620 37.037 6.80 6.26 30.62 3.91
3088 3966 7.653311 GGGTGAAGAATAAATTATTGTGCATCC 59.347 37.037 15.00 15.00 40.04 3.51
3089 3967 8.416329 GGTGAAGAATAAATTATTGTGCATCCT 58.584 33.333 6.80 0.00 30.62 3.24
3090 3968 9.241317 GTGAAGAATAAATTATTGTGCATCCTG 57.759 33.333 6.80 0.00 30.62 3.86
3091 3969 8.415553 TGAAGAATAAATTATTGTGCATCCTGG 58.584 33.333 2.58 0.00 0.00 4.45
3092 3970 8.537728 AAGAATAAATTATTGTGCATCCTGGA 57.462 30.769 2.58 0.00 0.00 3.86
3093 3971 8.716674 AGAATAAATTATTGTGCATCCTGGAT 57.283 30.769 2.57 2.57 0.00 3.41
3094 3972 8.582437 AGAATAAATTATTGTGCATCCTGGATG 58.418 33.333 28.45 28.45 42.37 3.51
3095 3973 8.481492 AATAAATTATTGTGCATCCTGGATGA 57.519 30.769 34.92 19.49 42.09 2.92
3096 3974 6.989155 AAATTATTGTGCATCCTGGATGAT 57.011 33.333 34.92 22.61 42.09 2.45
3097 3975 5.977489 ATTATTGTGCATCCTGGATGATG 57.023 39.130 34.92 15.35 42.09 3.07
3098 3976 3.588210 ATTGTGCATCCTGGATGATGA 57.412 42.857 34.92 19.18 43.94 2.92
3099 3977 3.369242 TTGTGCATCCTGGATGATGAA 57.631 42.857 34.92 21.06 43.94 2.57
3100 3978 3.588210 TGTGCATCCTGGATGATGAAT 57.412 42.857 34.92 0.00 43.94 2.57
3101 3979 4.710313 TGTGCATCCTGGATGATGAATA 57.290 40.909 34.92 15.16 43.94 1.75
3102 3980 5.251182 TGTGCATCCTGGATGATGAATAT 57.749 39.130 34.92 0.00 43.94 1.28
3103 3981 5.637127 TGTGCATCCTGGATGATGAATATT 58.363 37.500 34.92 0.00 43.94 1.28
3104 3982 6.781943 TGTGCATCCTGGATGATGAATATTA 58.218 36.000 34.92 10.80 43.94 0.98
3105 3983 7.232910 TGTGCATCCTGGATGATGAATATTAA 58.767 34.615 34.92 8.98 43.94 1.40
3106 3984 7.891712 TGTGCATCCTGGATGATGAATATTAAT 59.108 33.333 34.92 0.00 43.94 1.40
3107 3985 9.399797 GTGCATCCTGGATGATGAATATTAATA 57.600 33.333 34.92 0.00 43.94 0.98
3108 3986 9.399797 TGCATCCTGGATGATGAATATTAATAC 57.600 33.333 34.92 15.30 43.94 1.89
3109 3987 9.624373 GCATCCTGGATGATGAATATTAATACT 57.376 33.333 34.92 0.00 43.94 2.12
3201 4079 5.391312 ACAAAATGCTAACAAGACCCATC 57.609 39.130 0.00 0.00 0.00 3.51
3228 4106 5.866335 TTACCTACACCAAAATGCTAACG 57.134 39.130 0.00 0.00 0.00 3.18
3230 4108 3.749609 ACCTACACCAAAATGCTAACGAC 59.250 43.478 0.00 0.00 0.00 4.34
3240 4118 8.021396 ACCAAAATGCTAACGACTTTTTCTATC 58.979 33.333 0.00 0.00 0.00 2.08
3275 4696 5.591877 CCTAAACATGGCATAAGAAGCTTCT 59.408 40.000 23.49 23.49 39.74 2.85
3324 5754 1.988467 CTACGCATGACAGTGACACAG 59.012 52.381 8.59 1.82 0.00 3.66
3387 5825 9.218440 CAGTTAATTGATTAAGCAACCCAAATT 57.782 29.630 8.56 0.75 33.31 1.82
3469 5935 0.878416 GCGTTGCATGAACTTACCCA 59.122 50.000 0.00 0.00 31.70 4.51
3470 5936 1.135689 GCGTTGCATGAACTTACCCAG 60.136 52.381 0.00 0.00 31.70 4.45
3471 5937 1.135689 CGTTGCATGAACTTACCCAGC 60.136 52.381 0.00 0.00 31.70 4.85
3472 5938 1.202348 GTTGCATGAACTTACCCAGCC 59.798 52.381 0.00 0.00 0.00 4.85
3473 5939 0.323360 TGCATGAACTTACCCAGCCC 60.323 55.000 0.00 0.00 0.00 5.19
3474 5940 0.034089 GCATGAACTTACCCAGCCCT 60.034 55.000 0.00 0.00 0.00 5.19
3475 5941 1.755179 CATGAACTTACCCAGCCCTG 58.245 55.000 0.00 0.00 0.00 4.45
3551 6020 6.803154 AGTCAACTTAAGTAAATCACCAGC 57.197 37.500 8.92 0.00 0.00 4.85
3552 6021 6.296026 AGTCAACTTAAGTAAATCACCAGCA 58.704 36.000 8.92 0.00 0.00 4.41
3553 6022 6.942576 AGTCAACTTAAGTAAATCACCAGCAT 59.057 34.615 8.92 0.00 0.00 3.79
3554 6023 7.448469 AGTCAACTTAAGTAAATCACCAGCATT 59.552 33.333 8.92 0.00 0.00 3.56
3555 6024 8.726988 GTCAACTTAAGTAAATCACCAGCATTA 58.273 33.333 8.92 0.00 0.00 1.90
3556 6025 9.461312 TCAACTTAAGTAAATCACCAGCATTAT 57.539 29.630 8.92 0.00 0.00 1.28
3563 6032 9.845740 AAGTAAATCACCAGCATTATATACACA 57.154 29.630 0.00 0.00 0.00 3.72
3564 6033 9.273016 AGTAAATCACCAGCATTATATACACAC 57.727 33.333 0.00 0.00 0.00 3.82
3565 6034 9.051679 GTAAATCACCAGCATTATATACACACA 57.948 33.333 0.00 0.00 0.00 3.72
3566 6035 7.496529 AATCACCAGCATTATATACACACAC 57.503 36.000 0.00 0.00 0.00 3.82
3567 6036 5.047188 TCACCAGCATTATATACACACACG 58.953 41.667 0.00 0.00 0.00 4.49
3568 6037 5.047188 CACCAGCATTATATACACACACGA 58.953 41.667 0.00 0.00 0.00 4.35
3569 6038 5.522097 CACCAGCATTATATACACACACGAA 59.478 40.000 0.00 0.00 0.00 3.85
3570 6039 5.522460 ACCAGCATTATATACACACACGAAC 59.478 40.000 0.00 0.00 0.00 3.95
3571 6040 5.522097 CCAGCATTATATACACACACGAACA 59.478 40.000 0.00 0.00 0.00 3.18
3572 6041 6.036626 CCAGCATTATATACACACACGAACAA 59.963 38.462 0.00 0.00 0.00 2.83
3573 6042 7.119360 CAGCATTATATACACACACGAACAAG 58.881 38.462 0.00 0.00 0.00 3.16
3574 6043 6.816640 AGCATTATATACACACACGAACAAGT 59.183 34.615 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.767131 TCTCAATACCATGTTCACCTCGA 59.233 43.478 0.00 0.00 0.00 4.04
1 2 4.123497 TCTCAATACCATGTTCACCTCG 57.877 45.455 0.00 0.00 0.00 4.63
3 4 8.877864 TTTAATTCTCAATACCATGTTCACCT 57.122 30.769 0.00 0.00 0.00 4.00
4 5 8.956426 TCTTTAATTCTCAATACCATGTTCACC 58.044 33.333 0.00 0.00 0.00 4.02
6 7 9.958180 TCTCTTTAATTCTCAATACCATGTTCA 57.042 29.630 0.00 0.00 0.00 3.18
9 10 9.829507 CTCTCTCTTTAATTCTCAATACCATGT 57.170 33.333 0.00 0.00 0.00 3.21
16 17 9.382275 GCTTCTTCTCTCTCTTTAATTCTCAAT 57.618 33.333 0.00 0.00 0.00 2.57
17 18 8.370940 TGCTTCTTCTCTCTCTTTAATTCTCAA 58.629 33.333 0.00 0.00 0.00 3.02
18 19 7.901029 TGCTTCTTCTCTCTCTTTAATTCTCA 58.099 34.615 0.00 0.00 0.00 3.27
19 20 8.770438 TTGCTTCTTCTCTCTCTTTAATTCTC 57.230 34.615 0.00 0.00 0.00 2.87
20 21 9.382275 GATTGCTTCTTCTCTCTCTTTAATTCT 57.618 33.333 0.00 0.00 0.00 2.40
21 22 9.382275 AGATTGCTTCTTCTCTCTCTTTAATTC 57.618 33.333 0.00 0.00 0.00 2.17
24 25 7.978975 GCTAGATTGCTTCTTCTCTCTCTTTAA 59.021 37.037 0.00 0.00 35.79 1.52
25 26 7.341769 AGCTAGATTGCTTCTTCTCTCTCTTTA 59.658 37.037 0.00 0.00 40.93 1.85
26 27 6.155049 AGCTAGATTGCTTCTTCTCTCTCTTT 59.845 38.462 0.00 0.00 40.93 2.52
27 28 5.658190 AGCTAGATTGCTTCTTCTCTCTCTT 59.342 40.000 0.00 0.00 40.93 2.85
28 29 5.203528 AGCTAGATTGCTTCTTCTCTCTCT 58.796 41.667 0.00 0.00 40.93 3.10
29 30 5.520376 AGCTAGATTGCTTCTTCTCTCTC 57.480 43.478 0.00 0.00 40.93 3.20
30 31 6.129179 AGTAGCTAGATTGCTTCTTCTCTCT 58.871 40.000 0.00 0.00 43.74 3.10
31 32 6.391227 AGTAGCTAGATTGCTTCTTCTCTC 57.609 41.667 0.00 0.00 43.74 3.20
32 33 6.016276 GCTAGTAGCTAGATTGCTTCTTCTCT 60.016 42.308 15.16 0.00 43.74 3.10
33 34 6.149633 GCTAGTAGCTAGATTGCTTCTTCTC 58.850 44.000 15.16 0.00 43.74 2.87
34 35 6.084326 GCTAGTAGCTAGATTGCTTCTTCT 57.916 41.667 15.16 0.00 43.74 2.85
49 50 1.618487 ACGGGTCCATAGCTAGTAGC 58.382 55.000 14.62 14.62 42.84 3.58
50 51 3.244840 ACCTACGGGTCCATAGCTAGTAG 60.245 52.174 0.00 3.56 43.38 2.57
51 52 2.713167 ACCTACGGGTCCATAGCTAGTA 59.287 50.000 0.00 0.00 43.38 1.82
52 53 1.498145 ACCTACGGGTCCATAGCTAGT 59.502 52.381 0.00 0.00 43.38 2.57
53 54 2.289592 ACCTACGGGTCCATAGCTAG 57.710 55.000 0.00 0.00 43.38 3.42
64 65 1.897802 AGTTTACCACAGACCTACGGG 59.102 52.381 0.00 0.00 38.88 5.28
65 66 3.760684 AGTAGTTTACCACAGACCTACGG 59.239 47.826 0.00 0.00 0.00 4.02
66 67 4.456911 TGAGTAGTTTACCACAGACCTACG 59.543 45.833 0.00 0.00 0.00 3.51
67 68 5.618640 CGTGAGTAGTTTACCACAGACCTAC 60.619 48.000 0.00 0.00 32.78 3.18
68 69 4.456911 CGTGAGTAGTTTACCACAGACCTA 59.543 45.833 0.00 0.00 32.78 3.08
69 70 3.255149 CGTGAGTAGTTTACCACAGACCT 59.745 47.826 0.00 0.00 32.78 3.85
70 71 3.005155 ACGTGAGTAGTTTACCACAGACC 59.995 47.826 0.00 0.00 46.88 3.85
71 72 4.234530 ACGTGAGTAGTTTACCACAGAC 57.765 45.455 0.00 0.00 46.88 3.51
86 87 1.359848 CCCTTCCGATGAAACGTGAG 58.640 55.000 0.00 0.00 0.00 3.51
87 88 0.672401 GCCCTTCCGATGAAACGTGA 60.672 55.000 0.00 0.00 0.00 4.35
88 89 0.953471 TGCCCTTCCGATGAAACGTG 60.953 55.000 0.00 0.00 0.00 4.49
89 90 0.250553 TTGCCCTTCCGATGAAACGT 60.251 50.000 0.00 0.00 0.00 3.99
90 91 1.094785 ATTGCCCTTCCGATGAAACG 58.905 50.000 0.00 0.00 0.00 3.60
91 92 1.134946 CCATTGCCCTTCCGATGAAAC 59.865 52.381 0.00 0.00 0.00 2.78
92 93 1.272425 ACCATTGCCCTTCCGATGAAA 60.272 47.619 0.00 0.00 0.00 2.69
93 94 0.331278 ACCATTGCCCTTCCGATGAA 59.669 50.000 0.00 0.00 0.00 2.57
94 95 0.394216 CACCATTGCCCTTCCGATGA 60.394 55.000 0.00 0.00 0.00 2.92
95 96 0.680921 ACACCATTGCCCTTCCGATG 60.681 55.000 0.00 0.00 0.00 3.84
96 97 0.039618 AACACCATTGCCCTTCCGAT 59.960 50.000 0.00 0.00 0.00 4.18
97 98 0.893270 CAACACCATTGCCCTTCCGA 60.893 55.000 0.00 0.00 0.00 4.55
98 99 0.893270 TCAACACCATTGCCCTTCCG 60.893 55.000 0.00 0.00 0.00 4.30
99 100 1.205417 CATCAACACCATTGCCCTTCC 59.795 52.381 0.00 0.00 0.00 3.46
100 101 1.895131 ACATCAACACCATTGCCCTTC 59.105 47.619 0.00 0.00 0.00 3.46
101 102 2.014010 ACATCAACACCATTGCCCTT 57.986 45.000 0.00 0.00 0.00 3.95
102 103 2.308570 TCTACATCAACACCATTGCCCT 59.691 45.455 0.00 0.00 0.00 5.19
103 104 2.722094 TCTACATCAACACCATTGCCC 58.278 47.619 0.00 0.00 0.00 5.36
104 105 3.428045 GCTTCTACATCAACACCATTGCC 60.428 47.826 0.00 0.00 0.00 4.52
105 106 3.428045 GGCTTCTACATCAACACCATTGC 60.428 47.826 0.00 0.00 0.00 3.56
106 107 3.129287 GGGCTTCTACATCAACACCATTG 59.871 47.826 0.00 0.00 0.00 2.82
107 108 3.010584 AGGGCTTCTACATCAACACCATT 59.989 43.478 0.00 0.00 0.00 3.16
108 109 2.578021 AGGGCTTCTACATCAACACCAT 59.422 45.455 0.00 0.00 0.00 3.55
109 110 1.985159 AGGGCTTCTACATCAACACCA 59.015 47.619 0.00 0.00 0.00 4.17
110 111 2.633488 GAGGGCTTCTACATCAACACC 58.367 52.381 0.00 0.00 0.00 4.16
111 112 2.633488 GGAGGGCTTCTACATCAACAC 58.367 52.381 0.00 0.00 0.00 3.32
112 113 1.207089 CGGAGGGCTTCTACATCAACA 59.793 52.381 0.00 0.00 0.00 3.33
113 114 1.207329 ACGGAGGGCTTCTACATCAAC 59.793 52.381 0.00 0.00 0.00 3.18
114 115 1.207089 CACGGAGGGCTTCTACATCAA 59.793 52.381 0.00 0.00 0.00 2.57
115 116 0.824109 CACGGAGGGCTTCTACATCA 59.176 55.000 0.00 0.00 0.00 3.07
116 117 1.112113 TCACGGAGGGCTTCTACATC 58.888 55.000 0.00 0.00 0.00 3.06
117 118 1.689273 GATCACGGAGGGCTTCTACAT 59.311 52.381 0.00 0.00 0.00 2.29
118 119 1.112113 GATCACGGAGGGCTTCTACA 58.888 55.000 0.00 0.00 0.00 2.74
119 120 0.030908 CGATCACGGAGGGCTTCTAC 59.969 60.000 0.00 0.00 35.72 2.59
120 121 0.106868 TCGATCACGGAGGGCTTCTA 60.107 55.000 0.00 0.00 40.21 2.10
121 122 0.970937 TTCGATCACGGAGGGCTTCT 60.971 55.000 0.00 0.00 40.21 2.85
122 123 0.105039 ATTCGATCACGGAGGGCTTC 59.895 55.000 0.00 0.00 40.21 3.86
123 124 0.105039 GATTCGATCACGGAGGGCTT 59.895 55.000 0.00 0.00 40.21 4.35
124 125 1.742768 GATTCGATCACGGAGGGCT 59.257 57.895 0.00 0.00 40.21 5.19
125 126 1.301009 GGATTCGATCACGGAGGGC 60.301 63.158 0.00 0.00 40.21 5.19
126 127 1.367840 GGGATTCGATCACGGAGGG 59.632 63.158 0.00 0.00 40.21 4.30
127 128 1.367840 GGGGATTCGATCACGGAGG 59.632 63.158 0.00 0.00 40.21 4.30
128 129 1.115930 AGGGGGATTCGATCACGGAG 61.116 60.000 0.00 0.00 40.21 4.63
129 130 1.075525 AGGGGGATTCGATCACGGA 60.076 57.895 0.00 0.00 40.21 4.69
130 131 1.367840 GAGGGGGATTCGATCACGG 59.632 63.158 0.00 0.00 40.21 4.94
131 132 1.367840 GGAGGGGGATTCGATCACG 59.632 63.158 0.00 0.00 41.26 4.35
132 133 0.394565 CTGGAGGGGGATTCGATCAC 59.605 60.000 0.00 0.00 0.00 3.06
133 134 1.410850 GCTGGAGGGGGATTCGATCA 61.411 60.000 0.00 0.00 0.00 2.92
134 135 1.373059 GCTGGAGGGGGATTCGATC 59.627 63.158 0.00 0.00 0.00 3.69
135 136 1.384502 TGCTGGAGGGGGATTCGAT 60.385 57.895 0.00 0.00 0.00 3.59
136 137 2.040442 TGCTGGAGGGGGATTCGA 59.960 61.111 0.00 0.00 0.00 3.71
137 138 2.507944 CTGCTGGAGGGGGATTCG 59.492 66.667 0.00 0.00 0.00 3.34
138 139 1.694169 TCCTGCTGGAGGGGGATTC 60.694 63.158 15.66 0.00 43.06 2.52
139 140 2.003548 GTCCTGCTGGAGGGGGATT 61.004 63.158 15.66 0.00 44.16 3.01
140 141 2.367512 GTCCTGCTGGAGGGGGAT 60.368 66.667 15.66 0.00 44.16 3.85
163 164 3.699538 GAGATCCCATTTACGGGCTTTTT 59.300 43.478 0.00 0.00 46.92 1.94
164 165 3.288092 GAGATCCCATTTACGGGCTTTT 58.712 45.455 0.00 0.00 46.92 2.27
165 166 2.241176 TGAGATCCCATTTACGGGCTTT 59.759 45.455 0.00 0.00 46.92 3.51
166 167 1.843851 TGAGATCCCATTTACGGGCTT 59.156 47.619 0.00 0.00 46.92 4.35
167 168 1.141053 GTGAGATCCCATTTACGGGCT 59.859 52.381 0.00 0.00 46.92 5.19
168 169 1.594331 GTGAGATCCCATTTACGGGC 58.406 55.000 0.00 0.00 46.92 6.13
170 171 1.865865 CCGTGAGATCCCATTTACGG 58.134 55.000 0.00 0.00 43.93 4.02
171 172 1.138266 ACCCGTGAGATCCCATTTACG 59.862 52.381 0.00 0.00 0.00 3.18
172 173 3.133362 TGTACCCGTGAGATCCCATTTAC 59.867 47.826 0.00 0.00 0.00 2.01
173 174 3.376636 TGTACCCGTGAGATCCCATTTA 58.623 45.455 0.00 0.00 0.00 1.40
174 175 2.193127 TGTACCCGTGAGATCCCATTT 58.807 47.619 0.00 0.00 0.00 2.32
175 176 1.874129 TGTACCCGTGAGATCCCATT 58.126 50.000 0.00 0.00 0.00 3.16
176 177 1.874129 TTGTACCCGTGAGATCCCAT 58.126 50.000 0.00 0.00 0.00 4.00
177 178 1.646912 TTTGTACCCGTGAGATCCCA 58.353 50.000 0.00 0.00 0.00 4.37
178 179 2.773993 TTTTGTACCCGTGAGATCCC 57.226 50.000 0.00 0.00 0.00 3.85
179 180 3.606687 ACATTTTGTACCCGTGAGATCC 58.393 45.455 0.00 0.00 0.00 3.36
180 181 4.671766 GCAACATTTTGTACCCGTGAGATC 60.672 45.833 0.00 0.00 34.90 2.75
181 182 3.190535 GCAACATTTTGTACCCGTGAGAT 59.809 43.478 0.00 0.00 34.90 2.75
182 183 2.550606 GCAACATTTTGTACCCGTGAGA 59.449 45.455 0.00 0.00 34.90 3.27
183 184 2.664424 CGCAACATTTTGTACCCGTGAG 60.664 50.000 0.00 0.00 34.90 3.51
184 185 1.264557 CGCAACATTTTGTACCCGTGA 59.735 47.619 0.00 0.00 34.90 4.35
185 186 1.664588 CCGCAACATTTTGTACCCGTG 60.665 52.381 0.00 0.00 34.90 4.94
186 187 0.594110 CCGCAACATTTTGTACCCGT 59.406 50.000 0.00 0.00 34.90 5.28
187 188 0.731174 GCCGCAACATTTTGTACCCG 60.731 55.000 0.00 0.00 34.90 5.28
188 189 0.315568 TGCCGCAACATTTTGTACCC 59.684 50.000 0.00 0.00 34.90 3.69
189 190 1.696988 CTGCCGCAACATTTTGTACC 58.303 50.000 0.00 0.00 34.90 3.34
190 191 1.059942 GCTGCCGCAACATTTTGTAC 58.940 50.000 0.00 0.00 34.90 2.90
191 192 0.386605 CGCTGCCGCAACATTTTGTA 60.387 50.000 0.00 0.00 34.90 2.41
192 193 1.661197 CGCTGCCGCAACATTTTGT 60.661 52.632 0.00 0.00 34.90 2.83
193 194 0.938637 TTCGCTGCCGCAACATTTTG 60.939 50.000 0.00 0.00 35.30 2.44
194 195 0.249238 TTTCGCTGCCGCAACATTTT 60.249 45.000 0.00 0.00 35.30 1.82
195 196 0.249238 TTTTCGCTGCCGCAACATTT 60.249 45.000 0.00 0.00 35.30 2.32
196 197 0.249238 TTTTTCGCTGCCGCAACATT 60.249 45.000 0.00 0.00 35.30 2.71
197 198 0.664166 CTTTTTCGCTGCCGCAACAT 60.664 50.000 0.00 0.00 35.30 2.71
198 199 1.299014 CTTTTTCGCTGCCGCAACA 60.299 52.632 0.00 0.00 35.30 3.33
199 200 1.299089 ACTTTTTCGCTGCCGCAAC 60.299 52.632 0.00 0.00 35.30 4.17
200 201 1.299014 CACTTTTTCGCTGCCGCAA 60.299 52.632 0.00 0.00 35.30 4.85
201 202 1.999071 AACACTTTTTCGCTGCCGCA 61.999 50.000 0.00 0.00 35.30 5.69
202 203 0.869880 AAACACTTTTTCGCTGCCGC 60.870 50.000 0.00 0.00 0.00 6.53
203 204 1.555477 AAAACACTTTTTCGCTGCCG 58.445 45.000 0.00 0.00 27.97 5.69
204 205 6.146898 TCTATAAAAACACTTTTTCGCTGCC 58.853 36.000 0.00 0.00 41.60 4.85
205 206 7.657364 CATCTATAAAAACACTTTTTCGCTGC 58.343 34.615 0.00 0.00 41.60 5.25
206 207 7.201350 GGCATCTATAAAAACACTTTTTCGCTG 60.201 37.037 0.00 0.00 41.60 5.18
207 208 6.806739 GGCATCTATAAAAACACTTTTTCGCT 59.193 34.615 0.00 0.00 41.60 4.93
208 209 6.034577 GGGCATCTATAAAAACACTTTTTCGC 59.965 38.462 0.00 0.00 41.60 4.70
209 210 6.530181 GGGGCATCTATAAAAACACTTTTTCG 59.470 38.462 0.00 0.00 41.60 3.46
210 211 7.545615 CAGGGGCATCTATAAAAACACTTTTTC 59.454 37.037 0.00 0.00 41.60 2.29
211 212 7.016170 ACAGGGGCATCTATAAAAACACTTTTT 59.984 33.333 0.00 0.00 44.43 1.94
212 213 6.496911 ACAGGGGCATCTATAAAAACACTTTT 59.503 34.615 0.00 0.00 38.34 2.27
213 214 6.016555 ACAGGGGCATCTATAAAAACACTTT 58.983 36.000 0.00 0.00 0.00 2.66
214 215 5.580022 ACAGGGGCATCTATAAAAACACTT 58.420 37.500 0.00 0.00 0.00 3.16
215 216 5.193099 ACAGGGGCATCTATAAAAACACT 57.807 39.130 0.00 0.00 0.00 3.55
216 217 5.914898 AACAGGGGCATCTATAAAAACAC 57.085 39.130 0.00 0.00 0.00 3.32
217 218 5.186797 CCAAACAGGGGCATCTATAAAAACA 59.813 40.000 0.00 0.00 0.00 2.83
218 219 5.186992 ACCAAACAGGGGCATCTATAAAAAC 59.813 40.000 0.00 0.00 43.89 2.43
219 220 5.337788 ACCAAACAGGGGCATCTATAAAAA 58.662 37.500 0.00 0.00 43.89 1.94
220 221 4.941713 ACCAAACAGGGGCATCTATAAAA 58.058 39.130 0.00 0.00 43.89 1.52
221 222 4.601406 ACCAAACAGGGGCATCTATAAA 57.399 40.909 0.00 0.00 43.89 1.40
222 223 4.601406 AACCAAACAGGGGCATCTATAA 57.399 40.909 0.00 0.00 43.89 0.98
223 224 4.277476 CAAACCAAACAGGGGCATCTATA 58.723 43.478 0.00 0.00 43.89 1.31
224 225 3.099141 CAAACCAAACAGGGGCATCTAT 58.901 45.455 0.00 0.00 43.89 1.98
225 226 2.524306 CAAACCAAACAGGGGCATCTA 58.476 47.619 0.00 0.00 43.89 1.98
226 227 1.341080 CAAACCAAACAGGGGCATCT 58.659 50.000 0.00 0.00 43.89 2.90
227 228 0.321346 CCAAACCAAACAGGGGCATC 59.679 55.000 0.00 0.00 43.89 3.91
228 229 1.126948 CCCAAACCAAACAGGGGCAT 61.127 55.000 0.00 0.00 43.89 4.40
229 230 1.764054 CCCAAACCAAACAGGGGCA 60.764 57.895 0.00 0.00 43.89 5.36
230 231 3.147132 CCCAAACCAAACAGGGGC 58.853 61.111 0.00 0.00 43.89 5.80
232 233 0.397816 TGTCCCCAAACCAAACAGGG 60.398 55.000 0.00 0.00 43.89 4.45
233 234 1.715785 ATGTCCCCAAACCAAACAGG 58.284 50.000 0.00 0.00 45.67 4.00
234 235 4.085733 TCATATGTCCCCAAACCAAACAG 58.914 43.478 1.90 0.00 0.00 3.16
235 236 4.119556 TCATATGTCCCCAAACCAAACA 57.880 40.909 1.90 0.00 0.00 2.83
236 237 5.476091 TTTCATATGTCCCCAAACCAAAC 57.524 39.130 1.90 0.00 0.00 2.93
237 238 6.694445 ATTTTCATATGTCCCCAAACCAAA 57.306 33.333 1.90 0.00 0.00 3.28
238 239 7.986553 ATATTTTCATATGTCCCCAAACCAA 57.013 32.000 1.90 0.00 0.00 3.67
243 244 9.884636 CGTCTATATATTTTCATATGTCCCCAA 57.115 33.333 1.90 0.00 0.00 4.12
244 245 9.262240 TCGTCTATATATTTTCATATGTCCCCA 57.738 33.333 1.90 0.00 0.00 4.96
260 261 9.749340 TCCTGACATAATCCTTTCGTCTATATA 57.251 33.333 0.00 0.00 0.00 0.86
261 262 8.651589 TCCTGACATAATCCTTTCGTCTATAT 57.348 34.615 0.00 0.00 0.00 0.86
262 263 7.724506 ACTCCTGACATAATCCTTTCGTCTATA 59.275 37.037 0.00 0.00 0.00 1.31
263 264 6.551601 ACTCCTGACATAATCCTTTCGTCTAT 59.448 38.462 0.00 0.00 0.00 1.98
264 265 5.892119 ACTCCTGACATAATCCTTTCGTCTA 59.108 40.000 0.00 0.00 0.00 2.59
265 266 4.712337 ACTCCTGACATAATCCTTTCGTCT 59.288 41.667 0.00 0.00 0.00 4.18
266 267 5.012328 ACTCCTGACATAATCCTTTCGTC 57.988 43.478 0.00 0.00 0.00 4.20
267 268 5.422214 AACTCCTGACATAATCCTTTCGT 57.578 39.130 0.00 0.00 0.00 3.85
268 269 5.447818 GCAAACTCCTGACATAATCCTTTCG 60.448 44.000 0.00 0.00 0.00 3.46
269 270 5.415701 TGCAAACTCCTGACATAATCCTTTC 59.584 40.000 0.00 0.00 0.00 2.62
270 271 5.324409 TGCAAACTCCTGACATAATCCTTT 58.676 37.500 0.00 0.00 0.00 3.11
271 272 4.922206 TGCAAACTCCTGACATAATCCTT 58.078 39.130 0.00 0.00 0.00 3.36
272 273 4.574674 TGCAAACTCCTGACATAATCCT 57.425 40.909 0.00 0.00 0.00 3.24
273 274 4.498682 GCATGCAAACTCCTGACATAATCC 60.499 45.833 14.21 0.00 0.00 3.01
274 275 4.337555 AGCATGCAAACTCCTGACATAATC 59.662 41.667 21.98 0.00 0.00 1.75
275 276 4.097437 CAGCATGCAAACTCCTGACATAAT 59.903 41.667 21.98 0.00 0.00 1.28
276 277 3.441222 CAGCATGCAAACTCCTGACATAA 59.559 43.478 21.98 0.00 0.00 1.90
277 278 3.011818 CAGCATGCAAACTCCTGACATA 58.988 45.455 21.98 0.00 0.00 2.29
278 279 1.816835 CAGCATGCAAACTCCTGACAT 59.183 47.619 21.98 0.00 0.00 3.06
279 280 1.241165 CAGCATGCAAACTCCTGACA 58.759 50.000 21.98 0.00 0.00 3.58
280 281 1.198637 GACAGCATGCAAACTCCTGAC 59.801 52.381 21.98 4.01 42.53 3.51
281 282 1.072806 AGACAGCATGCAAACTCCTGA 59.927 47.619 21.98 0.00 42.53 3.86
282 283 1.531423 AGACAGCATGCAAACTCCTG 58.469 50.000 21.98 9.93 42.53 3.86
283 284 2.983229 CTAGACAGCATGCAAACTCCT 58.017 47.619 21.98 9.96 42.53 3.69
295 296 3.674682 AGACGTCATCTTTGCTAGACAGC 60.675 47.826 19.50 0.00 40.97 4.40
296 297 4.101942 GAGACGTCATCTTTGCTAGACAG 58.898 47.826 19.50 0.00 38.00 3.51
297 298 3.426292 CGAGACGTCATCTTTGCTAGACA 60.426 47.826 19.50 0.00 38.00 3.41
298 299 3.102276 CGAGACGTCATCTTTGCTAGAC 58.898 50.000 19.50 0.00 38.00 2.59
299 300 2.097629 CCGAGACGTCATCTTTGCTAGA 59.902 50.000 19.50 0.00 38.00 2.43
300 301 2.159366 ACCGAGACGTCATCTTTGCTAG 60.159 50.000 19.50 0.00 38.00 3.42
301 302 1.816835 ACCGAGACGTCATCTTTGCTA 59.183 47.619 19.50 0.00 38.00 3.49
302 303 0.603569 ACCGAGACGTCATCTTTGCT 59.396 50.000 19.50 0.00 38.00 3.91
303 304 0.992802 GACCGAGACGTCATCTTTGC 59.007 55.000 19.50 0.00 38.00 3.68
304 305 2.638556 AGACCGAGACGTCATCTTTG 57.361 50.000 19.50 0.19 38.00 2.77
305 306 2.352814 CCAAGACCGAGACGTCATCTTT 60.353 50.000 19.50 0.00 38.00 2.52
306 307 1.202582 CCAAGACCGAGACGTCATCTT 59.797 52.381 19.50 16.61 38.00 2.40
307 308 0.811915 CCAAGACCGAGACGTCATCT 59.188 55.000 19.50 11.64 41.91 2.90
308 309 0.526662 ACCAAGACCGAGACGTCATC 59.473 55.000 19.50 11.22 35.07 2.92
309 310 0.243907 CACCAAGACCGAGACGTCAT 59.756 55.000 19.50 2.45 35.07 3.06
310 311 1.658114 CACCAAGACCGAGACGTCA 59.342 57.895 19.50 0.00 35.07 4.35
311 312 1.733399 GCACCAAGACCGAGACGTC 60.733 63.158 7.70 7.70 0.00 4.34
312 313 2.201022 AGCACCAAGACCGAGACGT 61.201 57.895 0.00 0.00 0.00 4.34
313 314 1.734477 CAGCACCAAGACCGAGACG 60.734 63.158 0.00 0.00 0.00 4.18
314 315 2.029844 GCAGCACCAAGACCGAGAC 61.030 63.158 0.00 0.00 0.00 3.36
315 316 2.343758 GCAGCACCAAGACCGAGA 59.656 61.111 0.00 0.00 0.00 4.04
316 317 3.114616 CGCAGCACCAAGACCGAG 61.115 66.667 0.00 0.00 0.00 4.63
366 367 1.158007 ATTGGGGACTTGGAGTGGTT 58.842 50.000 0.00 0.00 0.00 3.67
373 374 2.302445 TGAATTTGCATTGGGGACTTGG 59.698 45.455 0.00 0.00 0.00 3.61
374 375 3.007182 ACTGAATTTGCATTGGGGACTTG 59.993 43.478 0.00 0.00 0.00 3.16
375 376 3.242011 ACTGAATTTGCATTGGGGACTT 58.758 40.909 0.00 0.00 0.00 3.01
376 377 2.893424 ACTGAATTTGCATTGGGGACT 58.107 42.857 0.00 0.00 0.00 3.85
377 378 3.683365 AACTGAATTTGCATTGGGGAC 57.317 42.857 0.00 0.00 0.00 4.46
378 379 4.837860 AGTTAACTGAATTTGCATTGGGGA 59.162 37.500 7.48 0.00 0.00 4.81
379 380 5.151297 AGTTAACTGAATTTGCATTGGGG 57.849 39.130 7.48 0.00 0.00 4.96
380 381 7.151308 TGTAAGTTAACTGAATTTGCATTGGG 58.849 34.615 9.34 0.00 27.04 4.12
418 426 8.606830 GTGATGGAGGGAGGAGTAATATTTATT 58.393 37.037 0.00 0.00 0.00 1.40
430 438 5.732331 ATTATTTTGTGATGGAGGGAGGA 57.268 39.130 0.00 0.00 0.00 3.71
431 439 5.893255 TCAATTATTTTGTGATGGAGGGAGG 59.107 40.000 0.00 0.00 0.00 4.30
432 440 6.604795 AGTCAATTATTTTGTGATGGAGGGAG 59.395 38.462 0.00 0.00 0.00 4.30
433 441 6.493166 AGTCAATTATTTTGTGATGGAGGGA 58.507 36.000 0.00 0.00 0.00 4.20
495 503 9.590088 CGTCACTTCCAAAATAAGTAACTTTAC 57.410 33.333 0.00 0.00 35.44 2.01
496 504 8.776470 CCGTCACTTCCAAAATAAGTAACTTTA 58.224 33.333 0.00 0.00 35.44 1.85
497 505 7.499895 TCCGTCACTTCCAAAATAAGTAACTTT 59.500 33.333 0.00 0.00 35.44 2.66
498 506 6.993902 TCCGTCACTTCCAAAATAAGTAACTT 59.006 34.615 0.00 0.00 35.44 2.66
499 507 6.527423 TCCGTCACTTCCAAAATAAGTAACT 58.473 36.000 0.00 0.00 35.44 2.24
500 508 6.426025 ACTCCGTCACTTCCAAAATAAGTAAC 59.574 38.462 0.00 0.00 35.44 2.50
501 509 6.527423 ACTCCGTCACTTCCAAAATAAGTAA 58.473 36.000 0.00 0.00 35.44 2.24
502 510 6.105397 ACTCCGTCACTTCCAAAATAAGTA 57.895 37.500 0.00 0.00 35.44 2.24
503 511 4.969484 ACTCCGTCACTTCCAAAATAAGT 58.031 39.130 0.00 0.00 37.67 2.24
504 512 5.929992 TGTACTCCGTCACTTCCAAAATAAG 59.070 40.000 0.00 0.00 0.00 1.73
505 513 5.856156 TGTACTCCGTCACTTCCAAAATAA 58.144 37.500 0.00 0.00 0.00 1.40
506 514 5.471556 TGTACTCCGTCACTTCCAAAATA 57.528 39.130 0.00 0.00 0.00 1.40
507 515 4.345859 TGTACTCCGTCACTTCCAAAAT 57.654 40.909 0.00 0.00 0.00 1.82
508 516 3.823281 TGTACTCCGTCACTTCCAAAA 57.177 42.857 0.00 0.00 0.00 2.44
509 517 3.556213 CCATGTACTCCGTCACTTCCAAA 60.556 47.826 0.00 0.00 0.00 3.28
510 518 2.028476 CCATGTACTCCGTCACTTCCAA 60.028 50.000 0.00 0.00 0.00 3.53
511 519 1.548719 CCATGTACTCCGTCACTTCCA 59.451 52.381 0.00 0.00 0.00 3.53
512 520 1.822990 TCCATGTACTCCGTCACTTCC 59.177 52.381 0.00 0.00 0.00 3.46
513 521 2.492484 AGTCCATGTACTCCGTCACTTC 59.508 50.000 0.00 0.00 0.00 3.01
514 522 2.492484 GAGTCCATGTACTCCGTCACTT 59.508 50.000 7.18 0.00 40.06 3.16
515 523 2.093106 GAGTCCATGTACTCCGTCACT 58.907 52.381 7.18 0.00 40.06 3.41
516 524 1.816835 TGAGTCCATGTACTCCGTCAC 59.183 52.381 15.11 0.00 44.40 3.67
517 525 2.209690 TGAGTCCATGTACTCCGTCA 57.790 50.000 15.11 0.00 44.40 4.35
518 526 3.085443 CATGAGTCCATGTACTCCGTC 57.915 52.381 15.11 0.00 44.40 4.79
532 540 0.910338 ACTGCTGAGGATGCATGAGT 59.090 50.000 2.46 0.00 39.86 3.41
533 541 1.134491 TGACTGCTGAGGATGCATGAG 60.134 52.381 2.46 0.00 39.86 2.90
550 558 1.601903 TGACGACATGGTTTTGCTGAC 59.398 47.619 0.00 0.00 0.00 3.51
554 562 0.039527 GGGTGACGACATGGTTTTGC 60.040 55.000 0.00 0.00 0.00 3.68
558 566 0.960364 GCATGGGTGACGACATGGTT 60.960 55.000 16.82 0.00 43.50 3.67
622 639 3.128938 ACTGACAGCCGAGTATAGAACAC 59.871 47.826 1.25 0.00 0.00 3.32
673 691 1.141019 GATGGCAACTCCGTCGCTA 59.859 57.895 0.00 0.00 40.78 4.26
688 710 3.242969 CCAAGATGCTCCGATTGTTGATG 60.243 47.826 0.00 0.00 0.00 3.07
850 902 0.099259 AGTCGTTGTCGTTGTCGTCA 59.901 50.000 0.00 0.00 38.33 4.35
853 905 1.445731 GTGTAGTCGTTGTCGTTGTCG 59.554 52.381 0.00 0.00 38.33 4.35
857 909 0.029834 AGCGTGTAGTCGTTGTCGTT 59.970 50.000 0.00 0.00 38.33 3.85
860 912 0.663568 AGCAGCGTGTAGTCGTTGTC 60.664 55.000 5.10 0.00 42.30 3.18
863 915 0.387367 CTGAGCAGCGTGTAGTCGTT 60.387 55.000 0.00 0.00 0.00 3.85
899 954 0.463204 TTCGTGTGGTGAACCGGTTA 59.537 50.000 22.33 0.44 39.43 2.85
900 955 0.179040 ATTCGTGTGGTGAACCGGTT 60.179 50.000 22.50 22.50 39.43 4.44
901 956 0.601841 GATTCGTGTGGTGAACCGGT 60.602 55.000 0.00 0.00 39.43 5.28
902 957 0.601576 TGATTCGTGTGGTGAACCGG 60.602 55.000 0.00 0.00 39.43 5.28
903 958 1.438651 ATGATTCGTGTGGTGAACCG 58.561 50.000 0.00 0.00 39.43 4.44
904 959 2.095263 CCAATGATTCGTGTGGTGAACC 60.095 50.000 0.00 0.00 0.00 3.62
905 960 2.668279 GCCAATGATTCGTGTGGTGAAC 60.668 50.000 8.13 0.00 33.43 3.18
906 961 1.539388 GCCAATGATTCGTGTGGTGAA 59.461 47.619 8.13 0.00 33.43 3.18
974 1031 0.393077 AACTGGACGTCCTCTTGGTG 59.607 55.000 33.39 16.64 36.82 4.17
1011 1100 1.443407 CGCCCACCTCTCTACCATG 59.557 63.158 0.00 0.00 0.00 3.66
1017 1106 4.658786 AACCCCGCCCACCTCTCT 62.659 66.667 0.00 0.00 0.00 3.10
1044 1133 1.754803 AGAAAGATGACGGTCGCCATA 59.245 47.619 3.34 0.00 0.00 2.74
1062 1151 2.523168 TGCACCACGGACCAGAGA 60.523 61.111 0.00 0.00 0.00 3.10
1815 1904 1.934525 GTGAGCTCGAGATCGTAGACA 59.065 52.381 24.34 4.79 42.51 3.41
1966 2055 0.528470 CTGTCGGAGTCCTTGTCTCC 59.472 60.000 7.77 2.27 45.56 3.71
1968 2057 0.962489 CACTGTCGGAGTCCTTGTCT 59.038 55.000 7.77 0.00 29.75 3.41
2076 2165 4.431131 CCCCCGCAAGCAGACCAT 62.431 66.667 0.00 0.00 0.00 3.55
2214 2303 5.767670 ACATCTAGGTAGTTCTTGGCTAGA 58.232 41.667 0.00 0.00 0.00 2.43
2217 2306 4.353777 TGACATCTAGGTAGTTCTTGGCT 58.646 43.478 0.00 0.00 0.00 4.75
2250 2339 1.067635 CGCTGAATTTCCCCAAACAGG 60.068 52.381 0.00 0.00 37.03 4.00
2304 2393 2.290450 TGGCATCAGATTCTCTGCAACA 60.290 45.455 15.85 6.43 43.95 3.33
2316 2405 3.055891 TCTTCTTCGACATTGGCATCAGA 60.056 43.478 0.00 0.00 0.00 3.27
2432 2527 0.107945 CTCCTTGGCCTCTTCTTCCG 60.108 60.000 3.32 0.00 0.00 4.30
2502 2597 3.967326 CCTTCCCTTTGTTTTCCTCCTTT 59.033 43.478 0.00 0.00 0.00 3.11
2559 2654 4.696479 ATCACTTCACTTGTCACCTTCT 57.304 40.909 0.00 0.00 0.00 2.85
2580 2676 4.447138 TCCTTTGCTTCCTTTCTTGGTA 57.553 40.909 0.00 0.00 0.00 3.25
2582 2678 4.670896 TTTCCTTTGCTTCCTTTCTTGG 57.329 40.909 0.00 0.00 0.00 3.61
2692 2806 7.311297 GGGGGCAGATATTACAAATGAGAGATA 60.311 40.741 0.00 0.00 0.00 1.98
2722 3600 6.548622 AGGGGAACGAATAGCGCTTATATATA 59.451 38.462 18.68 0.00 46.04 0.86
2723 3601 5.363005 AGGGGAACGAATAGCGCTTATATAT 59.637 40.000 18.68 0.00 46.04 0.86
2730 3608 1.144057 CAGGGGAACGAATAGCGCT 59.856 57.895 17.26 17.26 46.04 5.92
2731 3609 1.887707 CCAGGGGAACGAATAGCGC 60.888 63.158 0.00 0.00 46.04 5.92
2732 3610 1.227556 CCCAGGGGAACGAATAGCG 60.228 63.158 0.00 0.00 41.43 4.26
2733 3611 0.463833 CACCCAGGGGAACGAATAGC 60.464 60.000 11.37 0.00 38.96 2.97
2734 3612 1.139058 CTCACCCAGGGGAACGAATAG 59.861 57.143 11.37 0.00 38.96 1.73
2736 3614 0.546747 TCTCACCCAGGGGAACGAAT 60.547 55.000 11.37 0.00 38.96 3.34
2737 3615 0.765135 TTCTCACCCAGGGGAACGAA 60.765 55.000 11.37 4.09 38.96 3.85
2739 3617 0.328258 ATTTCTCACCCAGGGGAACG 59.672 55.000 11.37 0.00 38.96 3.95
2740 3618 2.576648 ACTATTTCTCACCCAGGGGAAC 59.423 50.000 11.37 0.00 38.96 3.62
2741 3619 2.929301 ACTATTTCTCACCCAGGGGAA 58.071 47.619 11.37 0.34 38.96 3.97
2742 3620 2.661176 ACTATTTCTCACCCAGGGGA 57.339 50.000 11.37 3.30 38.96 4.81
2743 3621 5.132816 AGAATAACTATTTCTCACCCAGGGG 59.867 44.000 11.37 6.87 42.03 4.79
2745 3623 7.281100 GTGAAGAATAACTATTTCTCACCCAGG 59.719 40.741 10.74 0.00 34.68 4.45
2748 3626 7.555306 GGTGAAGAATAACTATTTCTCACCC 57.445 40.000 20.55 11.11 43.34 4.61
2749 3627 7.110155 TGGGTGAAGAATAACTATTTCTCACC 58.890 38.462 21.77 21.77 45.40 4.02
2750 3628 8.738645 ATGGGTGAAGAATAACTATTTCTCAC 57.261 34.615 12.25 12.25 37.12 3.51
2759 3637 9.981460 AGAATAGAAAATGGGTGAAGAATAACT 57.019 29.630 0.00 0.00 0.00 2.24
2761 3639 9.973661 TCAGAATAGAAAATGGGTGAAGAATAA 57.026 29.630 0.00 0.00 0.00 1.40
2762 3640 9.396022 GTCAGAATAGAAAATGGGTGAAGAATA 57.604 33.333 0.00 0.00 0.00 1.75
2763 3641 8.112183 AGTCAGAATAGAAAATGGGTGAAGAAT 58.888 33.333 0.00 0.00 0.00 2.40
2764 3642 7.461749 AGTCAGAATAGAAAATGGGTGAAGAA 58.538 34.615 0.00 0.00 0.00 2.52
2765 3643 7.020827 AGTCAGAATAGAAAATGGGTGAAGA 57.979 36.000 0.00 0.00 0.00 2.87
2766 3644 7.391554 TGAAGTCAGAATAGAAAATGGGTGAAG 59.608 37.037 0.00 0.00 0.00 3.02
2767 3645 7.230747 TGAAGTCAGAATAGAAAATGGGTGAA 58.769 34.615 0.00 0.00 0.00 3.18
2768 3646 6.778821 TGAAGTCAGAATAGAAAATGGGTGA 58.221 36.000 0.00 0.00 0.00 4.02
2769 3647 7.452880 TTGAAGTCAGAATAGAAAATGGGTG 57.547 36.000 0.00 0.00 0.00 4.61
2770 3648 7.363268 GCATTGAAGTCAGAATAGAAAATGGGT 60.363 37.037 0.00 0.00 0.00 4.51
2771 3649 6.976925 GCATTGAAGTCAGAATAGAAAATGGG 59.023 38.462 0.00 0.00 0.00 4.00
2772 3650 7.541162 TGCATTGAAGTCAGAATAGAAAATGG 58.459 34.615 0.00 0.00 0.00 3.16
2773 3651 9.234384 GATGCATTGAAGTCAGAATAGAAAATG 57.766 33.333 0.00 0.00 0.00 2.32
2774 3652 8.127327 CGATGCATTGAAGTCAGAATAGAAAAT 58.873 33.333 8.37 0.00 0.00 1.82
2775 3653 7.119699 ACGATGCATTGAAGTCAGAATAGAAAA 59.880 33.333 21.12 0.00 0.00 2.29
2776 3654 6.595326 ACGATGCATTGAAGTCAGAATAGAAA 59.405 34.615 21.12 0.00 0.00 2.52
2777 3655 6.108687 ACGATGCATTGAAGTCAGAATAGAA 58.891 36.000 21.12 0.00 0.00 2.10
2778 3656 5.664457 ACGATGCATTGAAGTCAGAATAGA 58.336 37.500 21.12 0.00 0.00 1.98
2779 3657 5.980698 ACGATGCATTGAAGTCAGAATAG 57.019 39.130 21.12 0.00 0.00 1.73
2780 3658 8.437360 AAATACGATGCATTGAAGTCAGAATA 57.563 30.769 21.12 0.00 0.00 1.75
2781 3659 6.932356 AATACGATGCATTGAAGTCAGAAT 57.068 33.333 21.12 0.00 0.00 2.40
2782 3660 6.741992 AAATACGATGCATTGAAGTCAGAA 57.258 33.333 21.12 0.00 0.00 3.02
2783 3661 6.741992 AAAATACGATGCATTGAAGTCAGA 57.258 33.333 21.12 0.00 0.00 3.27
2784 3662 7.962373 TGTAAAAATACGATGCATTGAAGTCAG 59.038 33.333 21.12 0.00 0.00 3.51
2785 3663 7.811653 TGTAAAAATACGATGCATTGAAGTCA 58.188 30.769 21.12 5.82 0.00 3.41
2786 3664 8.841444 ATGTAAAAATACGATGCATTGAAGTC 57.159 30.769 21.12 0.00 0.00 3.01
2787 3665 9.638239 AAATGTAAAAATACGATGCATTGAAGT 57.362 25.926 21.12 11.38 31.22 3.01
2789 3667 8.793472 CGAAATGTAAAAATACGATGCATTGAA 58.207 29.630 21.12 0.00 31.22 2.69
2790 3668 7.965655 ACGAAATGTAAAAATACGATGCATTGA 59.034 29.630 21.12 4.83 31.22 2.57
2791 3669 8.103101 ACGAAATGTAAAAATACGATGCATTG 57.897 30.769 12.66 12.66 31.22 2.82
2792 3670 9.776158 TTACGAAATGTAAAAATACGATGCATT 57.224 25.926 0.00 0.00 40.05 3.56
2808 3686 9.482627 TGAAATAAGGCAAAATTTACGAAATGT 57.517 25.926 0.00 0.00 0.00 2.71
2897 3775 9.372541 CGTTTTACACTATGTTTTTACATTCGT 57.627 29.630 0.00 0.00 0.00 3.85
2898 3776 9.372541 ACGTTTTACACTATGTTTTTACATTCG 57.627 29.630 0.00 0.00 0.00 3.34
2920 3798 9.405587 CCAGAAAAATCACATTTTATGTACGTT 57.594 29.630 0.00 0.00 42.70 3.99
2921 3799 8.573035 ACCAGAAAAATCACATTTTATGTACGT 58.427 29.630 0.00 0.00 42.70 3.57
2922 3800 8.964420 ACCAGAAAAATCACATTTTATGTACG 57.036 30.769 6.44 0.00 42.70 3.67
2931 3809 9.533831 AGGTTATAAGACCAGAAAAATCACATT 57.466 29.630 0.00 0.00 42.35 2.71
2989 3867 9.835389 AAATAGTTGCATGCATATTGGTTTAAT 57.165 25.926 23.37 4.72 0.00 1.40
3035 3913 9.477484 GAGGTAATCTTATGATCGCTTTCTAAA 57.523 33.333 0.00 0.00 31.51 1.85
3036 3914 7.808381 CGAGGTAATCTTATGATCGCTTTCTAA 59.192 37.037 0.00 0.00 31.51 2.10
3037 3915 7.306213 CGAGGTAATCTTATGATCGCTTTCTA 58.694 38.462 0.00 0.00 31.51 2.10
3038 3916 6.153067 CGAGGTAATCTTATGATCGCTTTCT 58.847 40.000 0.00 0.00 31.51 2.52
3039 3917 5.346281 CCGAGGTAATCTTATGATCGCTTTC 59.654 44.000 0.00 0.00 31.51 2.62
3040 3918 5.230942 CCGAGGTAATCTTATGATCGCTTT 58.769 41.667 0.00 0.00 31.51 3.51
3041 3919 4.322049 CCCGAGGTAATCTTATGATCGCTT 60.322 45.833 0.00 0.00 31.51 4.68
3042 3920 3.193691 CCCGAGGTAATCTTATGATCGCT 59.806 47.826 0.00 0.00 31.51 4.93
3043 3921 3.056749 ACCCGAGGTAATCTTATGATCGC 60.057 47.826 0.00 0.00 32.11 4.58
3044 3922 4.217767 TCACCCGAGGTAATCTTATGATCG 59.782 45.833 0.00 0.00 32.11 3.69
3045 3923 5.723672 TCACCCGAGGTAATCTTATGATC 57.276 43.478 0.00 0.00 32.11 2.92
3046 3924 5.839063 TCTTCACCCGAGGTAATCTTATGAT 59.161 40.000 0.00 0.00 32.11 2.45
3047 3925 5.205821 TCTTCACCCGAGGTAATCTTATGA 58.794 41.667 0.00 0.00 32.11 2.15
3048 3926 5.531122 TCTTCACCCGAGGTAATCTTATG 57.469 43.478 0.00 0.00 32.11 1.90
3049 3927 6.749036 ATTCTTCACCCGAGGTAATCTTAT 57.251 37.500 0.00 0.00 32.11 1.73
3050 3928 7.664552 TTATTCTTCACCCGAGGTAATCTTA 57.335 36.000 0.00 0.00 32.11 2.10
3051 3929 6.555463 TTATTCTTCACCCGAGGTAATCTT 57.445 37.500 0.00 0.00 32.11 2.40
3052 3930 6.555463 TTTATTCTTCACCCGAGGTAATCT 57.445 37.500 0.00 0.00 32.11 2.40
3053 3931 7.803279 AATTTATTCTTCACCCGAGGTAATC 57.197 36.000 0.00 0.00 32.11 1.75
3054 3932 9.862149 AATAATTTATTCTTCACCCGAGGTAAT 57.138 29.630 0.00 0.00 32.11 1.89
3055 3933 9.116067 CAATAATTTATTCTTCACCCGAGGTAA 57.884 33.333 0.00 0.00 32.11 2.85
3056 3934 8.269317 ACAATAATTTATTCTTCACCCGAGGTA 58.731 33.333 0.00 0.00 32.11 3.08
3057 3935 7.067008 CACAATAATTTATTCTTCACCCGAGGT 59.933 37.037 0.00 0.00 35.62 3.85
3058 3936 7.417612 CACAATAATTTATTCTTCACCCGAGG 58.582 38.462 0.00 0.00 0.00 4.63
3059 3937 6.912591 GCACAATAATTTATTCTTCACCCGAG 59.087 38.462 0.00 0.00 0.00 4.63
3060 3938 6.375736 TGCACAATAATTTATTCTTCACCCGA 59.624 34.615 0.00 0.00 0.00 5.14
3061 3939 6.559810 TGCACAATAATTTATTCTTCACCCG 58.440 36.000 0.00 0.00 0.00 5.28
3062 3940 7.653311 GGATGCACAATAATTTATTCTTCACCC 59.347 37.037 0.00 0.00 0.00 4.61
3063 3941 8.416329 AGGATGCACAATAATTTATTCTTCACC 58.584 33.333 0.00 0.92 0.00 4.02
3064 3942 9.241317 CAGGATGCACAATAATTTATTCTTCAC 57.759 33.333 0.00 0.00 0.00 3.18
3065 3943 8.415553 CCAGGATGCACAATAATTTATTCTTCA 58.584 33.333 0.00 0.00 31.97 3.02
3066 3944 8.632679 TCCAGGATGCACAATAATTTATTCTTC 58.367 33.333 0.00 0.00 31.97 2.87
3067 3945 8.537728 TCCAGGATGCACAATAATTTATTCTT 57.462 30.769 0.00 0.00 31.97 2.52
3068 3946 8.582437 CATCCAGGATGCACAATAATTTATTCT 58.418 33.333 16.91 0.00 33.17 2.40
3069 3947 8.579006 TCATCCAGGATGCACAATAATTTATTC 58.421 33.333 23.32 0.00 39.63 1.75
3070 3948 8.481492 TCATCCAGGATGCACAATAATTTATT 57.519 30.769 23.32 0.00 39.63 1.40
3071 3949 8.528643 CATCATCCAGGATGCACAATAATTTAT 58.471 33.333 23.32 5.43 39.63 1.40
3072 3950 7.724951 TCATCATCCAGGATGCACAATAATTTA 59.275 33.333 23.32 3.22 43.44 1.40
3073 3951 6.551975 TCATCATCCAGGATGCACAATAATTT 59.448 34.615 23.32 0.00 43.44 1.82
3074 3952 6.072649 TCATCATCCAGGATGCACAATAATT 58.927 36.000 23.32 0.00 43.44 1.40
3075 3953 5.637127 TCATCATCCAGGATGCACAATAAT 58.363 37.500 23.32 8.00 43.44 1.28
3076 3954 5.051409 TCATCATCCAGGATGCACAATAA 57.949 39.130 23.32 5.91 43.44 1.40
3077 3955 4.710313 TCATCATCCAGGATGCACAATA 57.290 40.909 23.32 6.64 43.44 1.90
3078 3956 3.588210 TCATCATCCAGGATGCACAAT 57.412 42.857 23.32 9.75 43.44 2.71
3079 3957 3.369242 TTCATCATCCAGGATGCACAA 57.631 42.857 23.32 12.40 43.44 3.33
3080 3958 3.588210 ATTCATCATCCAGGATGCACA 57.412 42.857 23.32 8.12 43.44 4.57
3081 3959 7.692460 TTAATATTCATCATCCAGGATGCAC 57.308 36.000 23.32 0.00 43.44 4.57
3082 3960 9.399797 GTATTAATATTCATCATCCAGGATGCA 57.600 33.333 23.32 13.18 43.44 3.96
3083 3961 9.624373 AGTATTAATATTCATCATCCAGGATGC 57.376 33.333 23.32 5.35 43.44 3.91
3166 4044 9.217278 TGTTAGCATTTTGTATAGTTTTACCGA 57.783 29.630 0.00 0.00 0.00 4.69
3201 4079 3.672241 GCATTTTGGTGTAGGTAAAGCGG 60.672 47.826 0.00 0.00 0.00 5.52
3228 4106 8.277490 AGGTTTAATTCCCGATAGAAAAAGTC 57.723 34.615 0.00 0.00 39.76 3.01
3240 4118 4.158764 TGCCATGTTTAGGTTTAATTCCCG 59.841 41.667 0.00 0.00 0.00 5.14
3275 4696 6.315144 CGATATTGTGTTGGTGAAATGGTAGA 59.685 38.462 0.00 0.00 0.00 2.59
3387 5825 4.479158 ACTAGGTGGAAAGGCAAATTCAA 58.521 39.130 0.00 0.00 0.00 2.69
3429 5895 4.142622 CGCATGGAAAAGATGCAGAACTTA 60.143 41.667 0.00 0.00 45.50 2.24
3454 5920 0.323360 GGGCTGGGTAAGTTCATGCA 60.323 55.000 0.00 0.00 0.00 3.96
3469 5935 2.962421 GTGAAGAGTAGCTATCAGGGCT 59.038 50.000 0.00 0.00 43.02 5.19
3470 5936 2.036604 GGTGAAGAGTAGCTATCAGGGC 59.963 54.545 0.00 0.00 0.00 5.19
3471 5937 3.320541 CAGGTGAAGAGTAGCTATCAGGG 59.679 52.174 0.00 0.00 0.00 4.45
3472 5938 3.243704 GCAGGTGAAGAGTAGCTATCAGG 60.244 52.174 0.00 0.00 0.00 3.86
3473 5939 3.636300 AGCAGGTGAAGAGTAGCTATCAG 59.364 47.826 0.00 0.00 0.00 2.90
3474 5940 3.634448 GAGCAGGTGAAGAGTAGCTATCA 59.366 47.826 0.00 0.00 31.61 2.15
3475 5941 3.005367 GGAGCAGGTGAAGAGTAGCTATC 59.995 52.174 0.00 0.00 31.61 2.08
3526 5995 7.078228 GCTGGTGATTTACTTAAGTTGACTTG 58.922 38.462 14.49 0.00 37.40 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.