Multiple sequence alignment - TraesCS5B01G002300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G002300 chr5B 100.000 2888 0 0 1 2888 3473782 3476669 0.000000e+00 5334
1 TraesCS5B01G002300 chr5A 91.148 2926 169 31 1 2888 1348554 1345681 0.000000e+00 3886
2 TraesCS5B01G002300 chr5D 88.796 1321 68 31 771 2062 2512287 2511018 0.000000e+00 1546
3 TraesCS5B01G002300 chr5D 92.038 741 45 11 1 737 2513016 2512286 0.000000e+00 1029
4 TraesCS5B01G002300 chr5D 77.763 751 99 42 2179 2888 2510954 2510231 1.610000e-107 399
5 TraesCS5B01G002300 chr4D 90.196 153 15 0 1264 1416 18464572 18464724 1.750000e-47 200
6 TraesCS5B01G002300 chr4A 90.066 151 15 0 1264 1414 582840672 582840522 2.270000e-46 196
7 TraesCS5B01G002300 chr4B 89.404 151 16 0 1264 1414 30362600 30362750 1.060000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G002300 chr5B 3473782 3476669 2887 False 5334.000000 5334 100.000 1 2888 1 chr5B.!!$F1 2887
1 TraesCS5B01G002300 chr5A 1345681 1348554 2873 True 3886.000000 3886 91.148 1 2888 1 chr5A.!!$R1 2887
2 TraesCS5B01G002300 chr5D 2510231 2513016 2785 True 991.333333 1546 86.199 1 2888 3 chr5D.!!$R1 2887

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 334 0.035343 GGTAACTTGCTGAGGGGGTC 60.035 60.0 0.0 0.0 0.00 4.46 F
1041 1066 0.037303 CCCAGAAGGAAGCAGCAAGA 59.963 55.0 0.0 0.0 38.24 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1166 1194 0.599466 GGCGAACGGAGGGTAATAGC 60.599 60.0 0.00 0.0 0.0 2.97 R
2720 2799 0.393808 TAGGGGGCGCTGAACATTTC 60.394 55.0 7.64 0.0 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 2.468964 TCACTCGCTCGTAGTGACGTT 61.469 52.381 15.30 0.00 46.38 3.99
72 74 6.413892 TGCTATGGACAGTGACAAAATATGA 58.586 36.000 0.00 0.00 0.00 2.15
93 95 7.816945 ATGAAATCTCAAAAATACCTTTGCG 57.183 32.000 0.00 0.00 36.44 4.85
125 127 5.585820 TTCCTATGGTTTTTAAATCGGGC 57.414 39.130 0.00 0.00 0.00 6.13
126 128 4.601084 TCCTATGGTTTTTAAATCGGGCA 58.399 39.130 0.00 0.00 0.00 5.36
168 170 2.268762 TGCACACTAACATTGGCAGA 57.731 45.000 0.00 0.00 0.00 4.26
239 242 9.614792 ACCTATTTTTAGTATAAGGTTGCTCAG 57.385 33.333 0.00 0.00 0.00 3.35
260 263 7.491696 GCTCAGACAGTACGGTCTATTATTTTT 59.508 37.037 25.23 1.08 46.05 1.94
261 264 8.922058 TCAGACAGTACGGTCTATTATTTTTC 57.078 34.615 25.23 0.00 46.05 2.29
262 265 8.525316 TCAGACAGTACGGTCTATTATTTTTCA 58.475 33.333 25.23 0.98 46.05 2.69
263 266 9.146984 CAGACAGTACGGTCTATTATTTTTCAA 57.853 33.333 25.23 0.00 46.05 2.69
300 303 4.030913 ACCTATAGCACCATGTAGTGTGT 58.969 43.478 4.35 0.00 40.04 3.72
329 332 0.404040 TTGGTAACTTGCTGAGGGGG 59.596 55.000 0.00 0.00 37.61 5.40
331 334 0.035343 GGTAACTTGCTGAGGGGGTC 60.035 60.000 0.00 0.00 0.00 4.46
351 354 5.278561 GGGTCGACAAATAAATTCCACACAA 60.279 40.000 18.91 0.00 0.00 3.33
358 361 7.961351 ACAAATAAATTCCACACAAATCCTCA 58.039 30.769 0.00 0.00 0.00 3.86
539 542 0.538746 GACCACATCCAACCCGGTTT 60.539 55.000 0.00 0.00 35.57 3.27
540 543 0.825840 ACCACATCCAACCCGGTTTG 60.826 55.000 4.45 4.45 35.57 2.93
541 544 0.825840 CCACATCCAACCCGGTTTGT 60.826 55.000 11.12 0.00 34.02 2.83
571 574 6.717289 TGACCAGGTACTATTGCTGTAAAAT 58.283 36.000 0.00 0.00 36.02 1.82
579 582 9.503427 GGTACTATTGCTGTAAAATGATGTTTC 57.497 33.333 0.00 0.00 0.00 2.78
650 653 2.486203 GGTCGGACATTAACACATTGCA 59.514 45.455 10.76 0.00 0.00 4.08
663 666 5.112220 ACACATTGCACTTGTATCAACAG 57.888 39.130 1.35 0.00 36.83 3.16
754 759 6.494842 TGTTTTGTCACTTCATTTGCTAGAC 58.505 36.000 0.00 0.00 0.00 2.59
826 831 3.316071 TGGCATGCCTTGTAATGTTTG 57.684 42.857 35.53 0.00 36.94 2.93
883 908 9.507329 CCTATAGGTATGTATTGAACAAGCATT 57.493 33.333 10.96 0.82 42.70 3.56
903 928 5.762218 GCATTCACTAGAAGAATAGCATGGT 59.238 40.000 1.62 1.62 37.14 3.55
922 947 1.891150 GTCCCTCTGGTCGTCAAGTAA 59.109 52.381 0.00 0.00 0.00 2.24
952 977 4.492303 TAGGAGGGGAAGGGCGGG 62.492 72.222 0.00 0.00 0.00 6.13
968 993 2.595463 GGCAGCAGGTCAGTGCAA 60.595 61.111 0.00 0.00 46.60 4.08
1018 1043 9.546428 ACGATGAGATGATGTGTGAATTATTTA 57.454 29.630 0.00 0.00 0.00 1.40
1023 1048 8.388484 AGATGATGTGTGAATTATTTAGAGCC 57.612 34.615 0.00 0.00 0.00 4.70
1031 1056 6.069673 TGTGAATTATTTAGAGCCCAGAAGGA 60.070 38.462 0.00 0.00 38.24 3.36
1035 1060 1.656587 TTAGAGCCCAGAAGGAAGCA 58.343 50.000 0.00 0.00 38.24 3.91
1036 1061 1.198713 TAGAGCCCAGAAGGAAGCAG 58.801 55.000 0.00 0.00 38.24 4.24
1037 1062 1.748500 GAGCCCAGAAGGAAGCAGC 60.749 63.158 0.00 0.00 38.24 5.25
1038 1063 2.034687 GCCCAGAAGGAAGCAGCA 59.965 61.111 0.00 0.00 38.24 4.41
1039 1064 1.604593 GCCCAGAAGGAAGCAGCAA 60.605 57.895 0.00 0.00 38.24 3.91
1040 1065 1.593296 GCCCAGAAGGAAGCAGCAAG 61.593 60.000 0.00 0.00 38.24 4.01
1041 1066 0.037303 CCCAGAAGGAAGCAGCAAGA 59.963 55.000 0.00 0.00 38.24 3.02
1042 1067 1.451067 CCAGAAGGAAGCAGCAAGAG 58.549 55.000 0.00 0.00 36.89 2.85
1043 1068 1.451067 CAGAAGGAAGCAGCAAGAGG 58.549 55.000 0.00 0.00 0.00 3.69
1044 1069 0.327591 AGAAGGAAGCAGCAAGAGGG 59.672 55.000 0.00 0.00 0.00 4.30
1045 1070 0.326264 GAAGGAAGCAGCAAGAGGGA 59.674 55.000 0.00 0.00 0.00 4.20
1046 1071 0.327591 AAGGAAGCAGCAAGAGGGAG 59.672 55.000 0.00 0.00 0.00 4.30
1047 1072 1.077858 GGAAGCAGCAAGAGGGAGG 60.078 63.158 0.00 0.00 0.00 4.30
1048 1073 1.077858 GAAGCAGCAAGAGGGAGGG 60.078 63.158 0.00 0.00 0.00 4.30
1074 1099 5.303971 CAGGAGATAGTGATGGAAATGGAC 58.696 45.833 0.00 0.00 0.00 4.02
1143 1171 3.169099 TCTTCCTCCTTCCTCAGAAGTG 58.831 50.000 2.42 0.00 46.93 3.16
1166 1194 3.320541 CCAGATGCCTTCTCCTACTACTG 59.679 52.174 0.00 0.00 29.93 2.74
1302 1336 1.227527 CAAGATATGCACGGCGGGA 60.228 57.895 16.21 1.85 0.00 5.14
1517 1551 1.915266 TGCTCCTGGACCTGGACAG 60.915 63.158 15.82 8.88 34.54 3.51
1532 1566 3.276091 CAGCAACGACCACGCCAA 61.276 61.111 0.00 0.00 43.96 4.52
1587 1621 0.616964 AGGAGCAGGAGCATCAGACA 60.617 55.000 0.00 0.00 45.49 3.41
1879 1922 0.031857 CTTTGCCAAACCACGCATCA 59.968 50.000 0.00 0.00 34.35 3.07
1927 1970 2.643551 CCATCCAAATCGGTACTTGCT 58.356 47.619 0.00 0.00 35.57 3.91
1954 1998 3.324117 TCCTCTATCTTCGATCGTACGG 58.676 50.000 16.52 0.00 0.00 4.02
2004 2048 4.813697 GCTTTTCTATCTCGATCTTGCCTT 59.186 41.667 0.00 0.00 0.00 4.35
2005 2049 5.050431 GCTTTTCTATCTCGATCTTGCCTTC 60.050 44.000 0.00 0.00 0.00 3.46
2101 2153 4.568152 TCCTCTTTTGCTTGCTTTGTAC 57.432 40.909 0.00 0.00 0.00 2.90
2102 2154 3.951037 TCCTCTTTTGCTTGCTTTGTACA 59.049 39.130 0.00 0.00 0.00 2.90
2103 2155 4.584325 TCCTCTTTTGCTTGCTTTGTACAT 59.416 37.500 0.00 0.00 0.00 2.29
2105 2157 4.536065 TCTTTTGCTTGCTTTGTACATCG 58.464 39.130 0.00 0.00 0.00 3.84
2242 2298 5.007682 TCATAACTAACTTGCAACCCTTCC 58.992 41.667 0.00 0.00 0.00 3.46
2244 2300 1.203013 ACTAACTTGCAACCCTTCCCC 60.203 52.381 0.00 0.00 0.00 4.81
2252 2308 2.788807 TGCAACCCTTCCCCATATATGT 59.211 45.455 11.73 0.00 0.00 2.29
2256 2312 5.516591 GCAACCCTTCCCCATATATGTGTAT 60.517 44.000 11.73 0.00 0.00 2.29
2303 2359 3.380637 TGAGCTACCTTCCTAGCGTTTAG 59.619 47.826 0.00 0.00 43.49 1.85
2350 2406 2.036604 CCGCCCTTAATTTTTGTGTGGT 59.963 45.455 0.00 0.00 0.00 4.16
2454 2527 7.830201 TGTTTATTACAGACCAAACCCGAATAT 59.170 33.333 0.00 0.00 31.38 1.28
2533 2606 7.899973 TCGTTCATTTACCTTAGTTCCTTAGT 58.100 34.615 0.00 0.00 0.00 2.24
2599 2675 9.323985 CCAAATTTTTCCTGTTTGTTCTATCAA 57.676 29.630 0.00 0.00 32.41 2.57
2658 2737 9.614792 AATATCTGGGTTCAATCAAGTAACTAC 57.385 33.333 0.00 0.00 0.00 2.73
2685 2764 8.356657 TGTGCAAATAATAGTTAACAAAGCAGT 58.643 29.630 8.61 0.00 0.00 4.40
2735 2815 1.000274 ACAAAGAAATGTTCAGCGCCC 60.000 47.619 2.29 0.00 0.00 6.13
2751 2832 2.681682 GCGCCCCCTAACTTTAGCTTAA 60.682 50.000 0.00 0.00 0.00 1.85
2823 2908 9.734620 ATTTTACATCACAAAATCATACCGATG 57.265 29.630 0.00 0.00 31.54 3.84
2828 2913 4.097714 CACAAAATCATACCGATGCACAC 58.902 43.478 0.00 0.00 33.40 3.82
2840 2925 4.762765 ACCGATGCACACTTAACCAAAATA 59.237 37.500 0.00 0.00 0.00 1.40
2843 2928 6.378582 CGATGCACACTTAACCAAAATACTT 58.621 36.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 6.413892 TCATATTTTGTCACTGTCCATAGCA 58.586 36.000 0.00 0.00 0.00 3.49
72 74 4.621034 CGCGCAAAGGTATTTTTGAGATTT 59.379 37.500 8.75 0.00 39.31 2.17
93 95 4.965119 AAACCATAGGAATTCTTCACGC 57.035 40.909 5.23 0.00 0.00 5.34
125 127 4.221703 AGGTTGTCTCTAGTCAAGACCATG 59.778 45.833 7.42 0.00 42.03 3.66
126 128 4.421131 AGGTTGTCTCTAGTCAAGACCAT 58.579 43.478 7.42 0.00 42.03 3.55
260 263 7.039644 GCTATAGGTTAGAAGCTACCTGATTGA 60.040 40.741 15.01 0.00 44.34 2.57
261 264 7.093992 GCTATAGGTTAGAAGCTACCTGATTG 58.906 42.308 15.01 7.61 44.34 2.67
262 265 6.782988 TGCTATAGGTTAGAAGCTACCTGATT 59.217 38.462 15.01 4.02 44.34 2.57
263 266 6.209788 GTGCTATAGGTTAGAAGCTACCTGAT 59.790 42.308 15.01 7.91 44.34 2.90
321 324 3.343941 TTTATTTGTCGACCCCCTCAG 57.656 47.619 14.12 0.00 0.00 3.35
329 332 7.061789 GGATTTGTGTGGAATTTATTTGTCGAC 59.938 37.037 9.11 9.11 0.00 4.20
331 334 7.090173 AGGATTTGTGTGGAATTTATTTGTCG 58.910 34.615 0.00 0.00 0.00 4.35
351 354 4.209866 GCCGCCCCCATGAGGATT 62.210 66.667 0.00 0.00 38.24 3.01
358 361 1.803453 AATATGGATGCCGCCCCCAT 61.803 55.000 15.34 15.34 42.75 4.00
418 421 6.685368 GCAAAGGAGGGAAACACACTTTTTAT 60.685 38.462 0.00 0.00 29.26 1.40
507 510 9.349713 GGTTGGATGTGGTCATAATAAGATTTA 57.650 33.333 0.00 0.00 34.06 1.40
523 526 0.313672 CACAAACCGGGTTGGATGTG 59.686 55.000 34.42 21.42 45.49 3.21
530 533 2.619590 GGTCATATCCACAAACCGGGTT 60.620 50.000 6.59 6.59 0.00 4.11
539 542 5.221641 GCAATAGTACCTGGTCATATCCACA 60.222 44.000 0.63 0.00 33.55 4.17
540 543 5.012148 AGCAATAGTACCTGGTCATATCCAC 59.988 44.000 0.63 0.00 33.55 4.02
541 544 5.012046 CAGCAATAGTACCTGGTCATATCCA 59.988 44.000 0.63 0.00 36.00 3.41
583 586 9.723601 ACATCCAACAACTGCAAAAATAATAAT 57.276 25.926 0.00 0.00 0.00 1.28
584 587 8.986847 CACATCCAACAACTGCAAAAATAATAA 58.013 29.630 0.00 0.00 0.00 1.40
586 589 6.991531 ACACATCCAACAACTGCAAAAATAAT 59.008 30.769 0.00 0.00 0.00 1.28
589 592 4.571580 CACACATCCAACAACTGCAAAAAT 59.428 37.500 0.00 0.00 0.00 1.82
596 599 2.937591 GATGCACACATCCAACAACTG 58.062 47.619 0.00 0.00 45.94 3.16
650 653 8.452534 TCAAACGTTAAAACTGTTGATACAAGT 58.547 29.630 0.00 0.00 32.92 3.16
663 666 8.813282 AGGACATTTTCATTCAAACGTTAAAAC 58.187 29.630 0.00 0.00 0.00 2.43
808 813 5.334028 GGAAAACAAACATTACAAGGCATGC 60.334 40.000 9.90 9.90 0.00 4.06
849 854 8.201242 TCAATACATACCTATAGGCAACATCA 57.799 34.615 19.25 0.00 39.32 3.07
850 855 8.936864 GTTCAATACATACCTATAGGCAACATC 58.063 37.037 19.25 0.00 39.32 3.06
852 857 7.797062 TGTTCAATACATACCTATAGGCAACA 58.203 34.615 19.25 10.20 39.32 3.33
853 858 8.671384 TTGTTCAATACATACCTATAGGCAAC 57.329 34.615 19.25 8.06 36.05 4.17
855 860 6.934645 GCTTGTTCAATACATACCTATAGGCA 59.065 38.462 19.25 6.40 36.05 4.75
856 861 6.934645 TGCTTGTTCAATACATACCTATAGGC 59.065 38.462 19.25 0.00 36.05 3.93
857 862 9.507329 AATGCTTGTTCAATACATACCTATAGG 57.493 33.333 17.73 17.73 36.44 2.57
860 865 8.840321 GTGAATGCTTGTTCAATACATACCTAT 58.160 33.333 2.18 0.00 39.61 2.57
883 908 4.345257 GGGACCATGCTATTCTTCTAGTGA 59.655 45.833 0.00 0.00 0.00 3.41
903 928 2.297698 TTACTTGACGACCAGAGGGA 57.702 50.000 0.00 0.00 38.05 4.20
922 947 3.206866 TCCCCTCCTACTACAGTGCTTAT 59.793 47.826 0.00 0.00 0.00 1.73
952 977 2.641559 GTTGCACTGACCTGCTGC 59.358 61.111 0.00 0.00 38.07 5.25
1018 1043 1.989620 CTGCTTCCTTCTGGGCTCT 59.010 57.895 0.00 0.00 34.39 4.09
1023 1048 1.451067 CTCTTGCTGCTTCCTTCTGG 58.549 55.000 0.00 0.00 0.00 3.86
1031 1056 1.539869 TCCCTCCCTCTTGCTGCTT 60.540 57.895 0.00 0.00 0.00 3.91
1035 1060 1.994507 CTGCTCCCTCCCTCTTGCT 60.995 63.158 0.00 0.00 0.00 3.91
1036 1061 2.588989 CTGCTCCCTCCCTCTTGC 59.411 66.667 0.00 0.00 0.00 4.01
1037 1062 1.306482 TCCTGCTCCCTCCCTCTTG 60.306 63.158 0.00 0.00 0.00 3.02
1038 1063 1.002792 CTCCTGCTCCCTCCCTCTT 59.997 63.158 0.00 0.00 0.00 2.85
1039 1064 1.303423 ATCTCCTGCTCCCTCCCTCT 61.303 60.000 0.00 0.00 0.00 3.69
1040 1065 0.485099 TATCTCCTGCTCCCTCCCTC 59.515 60.000 0.00 0.00 0.00 4.30
1041 1066 0.486879 CTATCTCCTGCTCCCTCCCT 59.513 60.000 0.00 0.00 0.00 4.20
1042 1067 0.189822 ACTATCTCCTGCTCCCTCCC 59.810 60.000 0.00 0.00 0.00 4.30
1043 1068 1.133325 TCACTATCTCCTGCTCCCTCC 60.133 57.143 0.00 0.00 0.00 4.30
1044 1069 2.373335 TCACTATCTCCTGCTCCCTC 57.627 55.000 0.00 0.00 0.00 4.30
1045 1070 2.607499 CATCACTATCTCCTGCTCCCT 58.393 52.381 0.00 0.00 0.00 4.20
1046 1071 1.622811 CCATCACTATCTCCTGCTCCC 59.377 57.143 0.00 0.00 0.00 4.30
1047 1072 2.603021 TCCATCACTATCTCCTGCTCC 58.397 52.381 0.00 0.00 0.00 4.70
1048 1073 4.679373 TTTCCATCACTATCTCCTGCTC 57.321 45.455 0.00 0.00 0.00 4.26
1074 1099 2.422519 CCAAAGAGAGTCCATCCCCATG 60.423 54.545 0.00 0.00 0.00 3.66
1143 1171 1.127343 AGTAGGAGAAGGCATCTGGC 58.873 55.000 0.00 0.00 38.96 4.85
1166 1194 0.599466 GGCGAACGGAGGGTAATAGC 60.599 60.000 0.00 0.00 0.00 2.97
1494 1528 1.595882 CAGGTCCAGGAGCACAGAG 59.404 63.158 21.01 1.49 31.89 3.35
1517 1551 4.025401 CCTTGGCGTGGTCGTTGC 62.025 66.667 0.00 0.00 39.49 4.17
1587 1621 3.233507 TGATCTTCTTTTTGCCTTGGCT 58.766 40.909 13.18 0.00 0.00 4.75
1879 1922 5.860941 ATTCGACTGGATGATCAGTACTT 57.139 39.130 0.09 0.00 46.76 2.24
1927 1970 3.417101 GATCGAAGATAGAGGAGCCTCA 58.583 50.000 18.16 5.39 45.12 3.86
1954 1998 4.384846 CAGTTAATGGACACACACGTACTC 59.615 45.833 0.00 0.00 0.00 2.59
1966 2010 8.897752 AGATAGAAAAGCAATCAGTTAATGGAC 58.102 33.333 0.00 0.00 0.00 4.02
2004 2048 8.746052 TGAAGTTGTTGGATAGAAGAAAAAGA 57.254 30.769 0.00 0.00 0.00 2.52
2005 2049 9.617975 GATGAAGTTGTTGGATAGAAGAAAAAG 57.382 33.333 0.00 0.00 0.00 2.27
2064 2116 2.039480 AGAGGAACATGGCATGCGATAT 59.961 45.455 26.70 0.20 0.00 1.63
2065 2117 1.417517 AGAGGAACATGGCATGCGATA 59.582 47.619 26.70 2.47 0.00 2.92
2069 2121 2.613691 CAAAAGAGGAACATGGCATGC 58.386 47.619 26.70 9.90 0.00 4.06
2220 2272 4.157840 GGGAAGGGTTGCAAGTTAGTTATG 59.842 45.833 0.00 0.00 0.00 1.90
2242 2298 9.895138 TCAATCATCTTCATACACATATATGGG 57.105 33.333 13.62 13.62 37.19 4.00
2278 2334 1.476891 CGCTAGGAAGGTAGCTCAACA 59.523 52.381 0.00 0.00 42.91 3.33
2438 2511 1.564348 AGCCATATTCGGGTTTGGTCT 59.436 47.619 0.00 0.00 30.88 3.85
2454 2527 7.676683 AGAAACTAGGAATATCTTGTAGCCA 57.323 36.000 0.00 0.00 0.00 4.75
2505 2578 7.611213 AGGAACTAAGGTAAATGAACGAATG 57.389 36.000 0.00 0.00 36.02 2.67
2544 2617 5.536161 AGTTGATGGCAATGTAGAAAGTGTT 59.464 36.000 0.00 0.00 36.22 3.32
2545 2618 5.072741 AGTTGATGGCAATGTAGAAAGTGT 58.927 37.500 0.00 0.00 36.22 3.55
2635 2714 7.106239 CAGTAGTTACTTGATTGAACCCAGAT 58.894 38.462 0.00 0.00 33.46 2.90
2637 2716 6.147821 CACAGTAGTTACTTGATTGAACCCAG 59.852 42.308 0.00 0.00 33.46 4.45
2640 2719 5.468746 TGCACAGTAGTTACTTGATTGAACC 59.531 40.000 0.00 0.00 33.46 3.62
2658 2737 8.741101 TGCTTTGTTAACTATTATTTGCACAG 57.259 30.769 7.22 0.00 0.00 3.66
2718 2797 1.250840 GGGGGCGCTGAACATTTCTT 61.251 55.000 7.64 0.00 0.00 2.52
2719 2798 1.678970 GGGGGCGCTGAACATTTCT 60.679 57.895 7.64 0.00 0.00 2.52
2720 2799 0.393808 TAGGGGGCGCTGAACATTTC 60.394 55.000 7.64 0.00 0.00 2.17
2819 2904 5.938322 AGTATTTTGGTTAAGTGTGCATCG 58.062 37.500 0.00 0.00 0.00 3.84
2823 2908 5.629435 GCTGAAGTATTTTGGTTAAGTGTGC 59.371 40.000 0.00 0.00 0.00 4.57
2828 2913 9.346725 GAATCTTGCTGAAGTATTTTGGTTAAG 57.653 33.333 0.00 0.00 0.00 1.85
2840 2925 7.337942 CCTTAATTAGTGGAATCTTGCTGAAGT 59.662 37.037 1.61 0.00 0.00 3.01
2843 2928 6.957631 TCCTTAATTAGTGGAATCTTGCTGA 58.042 36.000 6.77 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.