Multiple sequence alignment - TraesCS5B01G002100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G002100 chr5B 100.000 3380 0 0 1 3380 2882488 2885867 0.000000e+00 6242.0
1 TraesCS5B01G002100 chr5B 85.119 1391 132 34 966 2325 2614438 2613092 0.000000e+00 1352.0
2 TraesCS5B01G002100 chr5B 81.176 1445 170 65 924 2325 2805420 2806805 0.000000e+00 1068.0
3 TraesCS5B01G002100 chr5B 81.547 569 96 8 12 574 652624567 652624002 8.550000e-126 460.0
4 TraesCS5B01G002100 chr5B 83.957 187 16 7 679 864 2804828 2805001 2.090000e-37 167.0
5 TraesCS5B01G002100 chr5D 86.152 2679 244 71 9 2619 3069547 3072166 0.000000e+00 2774.0
6 TraesCS5B01G002100 chr5D 88.897 1378 111 20 968 2325 3012416 3013771 0.000000e+00 1659.0
7 TraesCS5B01G002100 chr5D 81.983 1432 161 52 929 2328 2797159 2798525 0.000000e+00 1125.0
8 TraesCS5B01G002100 chr5D 89.840 187 15 4 679 864 2796808 2796991 1.570000e-58 237.0
9 TraesCS5B01G002100 chr5D 91.429 140 12 0 3085 3224 3072536 3072675 3.440000e-45 193.0
10 TraesCS5B01G002100 chr5D 89.076 119 10 3 3260 3375 3073838 3073956 9.770000e-31 145.0
11 TraesCS5B01G002100 chr5D 97.297 37 1 0 2459 2495 3074678 3074714 2.820000e-06 63.9
12 TraesCS5B01G002100 chr5A 84.560 1386 141 47 967 2325 1759616 1758277 0.000000e+00 1306.0
13 TraesCS5B01G002100 chr5A 82.108 1442 162 57 929 2325 1834996 1833606 0.000000e+00 1146.0
14 TraesCS5B01G002100 chr5A 91.293 781 62 2 1050 1827 1714393 1713616 0.000000e+00 1061.0
15 TraesCS5B01G002100 chr5A 84.737 570 49 16 411 974 1760448 1759911 1.380000e-148 536.0
16 TraesCS5B01G002100 chr5A 90.106 283 25 1 1053 1332 1336371 1336653 6.890000e-97 364.0
17 TraesCS5B01G002100 chr5A 93.038 158 10 1 2908 3065 605239108 605238952 2.620000e-56 230.0
18 TraesCS5B01G002100 chr5A 93.464 153 10 0 2905 3057 606537845 606537997 9.430000e-56 228.0
19 TraesCS5B01G002100 chr5A 92.053 151 12 0 2908 3058 577730695 577730545 2.640000e-51 213.0
20 TraesCS5B01G002100 chr5A 95.833 48 0 2 970 1015 1714433 1714386 3.620000e-10 76.8
21 TraesCS5B01G002100 chr2B 81.469 572 98 7 12 577 95792914 95792345 2.380000e-126 462.0
22 TraesCS5B01G002100 chr7B 81.207 580 98 10 12 584 126084160 126083585 1.110000e-124 457.0
23 TraesCS5B01G002100 chr1B 81.294 572 99 7 12 577 30713874 30713305 1.110000e-124 457.0
24 TraesCS5B01G002100 chr1B 80.961 583 103 7 12 588 57805600 57805020 3.980000e-124 455.0
25 TraesCS5B01G002100 chr4A 80.961 583 102 8 9 585 733340300 733340879 1.430000e-123 453.0
26 TraesCS5B01G002100 chr4A 88.889 72 6 2 1313 1383 583163365 583163295 1.670000e-13 87.9
27 TraesCS5B01G002100 chr7D 80.815 589 100 10 9 591 264341488 264342069 1.850000e-122 449.0
28 TraesCS5B01G002100 chr7D 91.447 152 11 1 2907 3058 155299083 155299232 1.230000e-49 207.0
29 TraesCS5B01G002100 chr3D 81.086 571 100 7 21 585 463682074 463681506 1.850000e-122 449.0
30 TraesCS5B01G002100 chr2A 92.053 151 12 0 2908 3058 767956380 767956230 2.640000e-51 213.0
31 TraesCS5B01G002100 chrUn 90.260 154 15 0 2905 3058 92772462 92772309 5.720000e-48 202.0
32 TraesCS5B01G002100 chr7A 89.542 153 15 1 2906 3057 173235394 173235242 3.440000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G002100 chr5B 2882488 2885867 3379 False 6242.000 6242 100.0000 1 3380 1 chr5B.!!$F1 3379
1 TraesCS5B01G002100 chr5B 2613092 2614438 1346 True 1352.000 1352 85.1190 966 2325 1 chr5B.!!$R1 1359
2 TraesCS5B01G002100 chr5B 2804828 2806805 1977 False 617.500 1068 82.5665 679 2325 2 chr5B.!!$F2 1646
3 TraesCS5B01G002100 chr5B 652624002 652624567 565 True 460.000 460 81.5470 12 574 1 chr5B.!!$R2 562
4 TraesCS5B01G002100 chr5D 3012416 3013771 1355 False 1659.000 1659 88.8970 968 2325 1 chr5D.!!$F1 1357
5 TraesCS5B01G002100 chr5D 3069547 3074714 5167 False 793.975 2774 90.9885 9 3375 4 chr5D.!!$F3 3366
6 TraesCS5B01G002100 chr5D 2796808 2798525 1717 False 681.000 1125 85.9115 679 2328 2 chr5D.!!$F2 1649
7 TraesCS5B01G002100 chr5A 1833606 1834996 1390 True 1146.000 1146 82.1080 929 2325 1 chr5A.!!$R1 1396
8 TraesCS5B01G002100 chr5A 1758277 1760448 2171 True 921.000 1306 84.6485 411 2325 2 chr5A.!!$R5 1914
9 TraesCS5B01G002100 chr5A 1713616 1714433 817 True 568.900 1061 93.5630 970 1827 2 chr5A.!!$R4 857
10 TraesCS5B01G002100 chr2B 95792345 95792914 569 True 462.000 462 81.4690 12 577 1 chr2B.!!$R1 565
11 TraesCS5B01G002100 chr7B 126083585 126084160 575 True 457.000 457 81.2070 12 584 1 chr7B.!!$R1 572
12 TraesCS5B01G002100 chr1B 30713305 30713874 569 True 457.000 457 81.2940 12 577 1 chr1B.!!$R1 565
13 TraesCS5B01G002100 chr1B 57805020 57805600 580 True 455.000 455 80.9610 12 588 1 chr1B.!!$R2 576
14 TraesCS5B01G002100 chr4A 733340300 733340879 579 False 453.000 453 80.9610 9 585 1 chr4A.!!$F1 576
15 TraesCS5B01G002100 chr7D 264341488 264342069 581 False 449.000 449 80.8150 9 591 1 chr7D.!!$F2 582
16 TraesCS5B01G002100 chr3D 463681506 463682074 568 True 449.000 449 81.0860 21 585 1 chr3D.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
371 376 0.396556 TAGTGCGCTGGTCCTATGGA 60.397 55.0 10.8 0.0 0.0 3.41 F
1009 1722 0.539051 CACCACCTCACTCATCTCCC 59.461 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1792 2573 0.108945 GCTTCTGGTTTCCATGCTGC 60.109 55.0 0.0 0.0 30.82 5.25 R
2522 3401 0.042708 GCGTGAATCATGCTAGCGTG 60.043 55.0 27.8 27.8 42.44 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.895530 CGTCTCTGGTGGCCTTAGAA 59.104 55.000 3.32 0.00 0.00 2.10
70 72 2.586792 GGCCCTTGTCAGCGAGAT 59.413 61.111 0.00 0.00 0.00 2.75
90 93 3.586470 TGGCTCCTTTTTAGGTGTTCA 57.414 42.857 0.00 0.00 0.00 3.18
101 104 8.347035 CCTTTTTAGGTGTTCATTCGAGTTTTA 58.653 33.333 0.00 0.00 0.00 1.52
118 121 6.206048 CGAGTTTTATTAGGGTTTGTGTCCTT 59.794 38.462 0.00 0.00 34.75 3.36
119 122 7.388500 CGAGTTTTATTAGGGTTTGTGTCCTTA 59.612 37.037 0.00 0.00 34.75 2.69
159 162 1.209747 ACGGCTCCCTAAAGATGGAAC 59.790 52.381 0.00 0.00 0.00 3.62
174 177 1.447314 GAACAAGGTACTCCCCGCG 60.447 63.158 0.00 0.00 38.49 6.46
213 218 1.516161 GCATCTAGCATCGCCAATGA 58.484 50.000 0.00 0.00 44.79 2.57
258 263 3.758554 CGGATCTGTCCTTGGTGAATTTT 59.241 43.478 0.00 0.00 42.73 1.82
262 267 6.349694 GGATCTGTCCTTGGTGAATTTTCTTC 60.350 42.308 0.00 0.00 41.60 2.87
272 277 5.181245 TGGTGAATTTTCTTCGATCTGGTTC 59.819 40.000 0.00 0.00 0.00 3.62
274 279 6.402658 GGTGAATTTTCTTCGATCTGGTTCTC 60.403 42.308 0.00 0.00 0.00 2.87
286 291 0.518636 TGGTTCTCGTTCGTCTACGG 59.481 55.000 2.24 0.00 41.67 4.02
299 304 1.534595 GTCTACGGTCGTGTGTCTTCT 59.465 52.381 6.25 0.00 0.00 2.85
327 332 4.036616 GGGTCCTTTCGATCTACACTACTC 59.963 50.000 0.00 0.00 0.00 2.59
353 358 1.962306 GGCGGCGGTTGTTGTTCTA 60.962 57.895 9.78 0.00 0.00 2.10
371 376 0.396556 TAGTGCGCTGGTCCTATGGA 60.397 55.000 10.80 0.00 0.00 3.41
373 378 1.685765 TGCGCTGGTCCTATGGAGT 60.686 57.895 9.73 0.00 29.39 3.85
381 386 3.706594 CTGGTCCTATGGAGTCTTAGCAA 59.293 47.826 0.00 0.00 29.39 3.91
384 389 4.591072 GGTCCTATGGAGTCTTAGCAAGAT 59.409 45.833 2.61 0.00 40.18 2.40
405 410 7.406031 AGATGACTTTCCGATTGTCTACTAA 57.594 36.000 0.00 0.00 0.00 2.24
516 524 9.265862 TGGTCTATGGATTTGGATGTAATTTTT 57.734 29.630 0.00 0.00 0.00 1.94
574 585 8.576442 TGAAGATGAATAGGTCAAAAGTTTTCC 58.424 33.333 0.00 0.00 40.50 3.13
674 693 5.482526 TGCTGGAAAGTAGTATGTAGGTGAA 59.517 40.000 0.00 0.00 0.00 3.18
677 696 7.064728 GCTGGAAAGTAGTATGTAGGTGAAAAG 59.935 40.741 0.00 0.00 0.00 2.27
679 698 8.092687 TGGAAAGTAGTATGTAGGTGAAAAGAC 58.907 37.037 0.00 0.00 0.00 3.01
696 715 8.410912 GTGAAAAGACACCCTAATAAAACTTGT 58.589 33.333 0.00 0.00 35.07 3.16
729 748 7.241042 AGATGCTAGTAAGTAGTGGAAACAA 57.759 36.000 0.00 0.00 46.06 2.83
754 773 2.262423 AAAGCAGAAGACAGTGGGAC 57.738 50.000 0.00 0.00 0.00 4.46
816 840 8.997621 TTGACATCCAGTTCATTTACTACTAC 57.002 34.615 0.00 0.00 0.00 2.73
817 841 8.362464 TGACATCCAGTTCATTTACTACTACT 57.638 34.615 0.00 0.00 0.00 2.57
818 842 8.812972 TGACATCCAGTTCATTTACTACTACTT 58.187 33.333 0.00 0.00 0.00 2.24
819 843 9.654663 GACATCCAGTTCATTTACTACTACTTT 57.345 33.333 0.00 0.00 0.00 2.66
1008 1721 1.480137 CTCACCACCTCACTCATCTCC 59.520 57.143 0.00 0.00 0.00 3.71
1009 1722 0.539051 CACCACCTCACTCATCTCCC 59.461 60.000 0.00 0.00 0.00 4.30
1025 1738 2.104170 CTCCCACTCACTACTTCTCCC 58.896 57.143 0.00 0.00 0.00 4.30
1032 1745 2.900546 CTCACTACTTCTCCCAACACCT 59.099 50.000 0.00 0.00 0.00 4.00
1033 1746 3.314693 TCACTACTTCTCCCAACACCTT 58.685 45.455 0.00 0.00 0.00 3.50
1034 1747 3.071023 TCACTACTTCTCCCAACACCTTG 59.929 47.826 0.00 0.00 0.00 3.61
1035 1748 3.071023 CACTACTTCTCCCAACACCTTGA 59.929 47.826 0.00 0.00 0.00 3.02
1039 1752 1.124780 TCTCCCAACACCTTGACGAA 58.875 50.000 0.00 0.00 0.00 3.85
1056 1785 2.159366 ACGAAAGTAGCCATCTCACTCG 60.159 50.000 0.00 0.00 46.88 4.18
1074 1803 0.955919 CGTTCCTCCAGCAACCTTCC 60.956 60.000 0.00 0.00 0.00 3.46
1098 1829 0.942962 CATCTTGGGCTGCGATCTTC 59.057 55.000 0.00 0.00 0.00 2.87
1113 1849 3.512680 GATCTTCCTGTTGATCGTTCGT 58.487 45.455 0.00 0.00 31.29 3.85
1166 1908 3.343788 CTGGTCGTCGCTCCTCACC 62.344 68.421 7.56 0.66 0.00 4.02
1422 2167 4.208686 CCTCCTCTACGCACCGCC 62.209 72.222 0.00 0.00 0.00 6.13
1423 2168 4.554363 CTCCTCTACGCACCGCCG 62.554 72.222 0.00 0.00 0.00 6.46
1495 2243 0.874390 TGGCATTGCAAGAAGACGAC 59.126 50.000 11.39 0.00 0.00 4.34
1517 2298 1.388531 GAGGAGGAGGAGGTGACCA 59.611 63.158 3.63 0.00 0.00 4.02
1802 2583 2.596923 TGCAACCGCAGCATGGAA 60.597 55.556 0.00 0.00 45.36 3.53
1812 2593 1.542492 CAGCATGGAAACCAGAAGCT 58.458 50.000 0.00 0.00 39.46 3.74
1852 2696 1.612950 CATCATGACGAGGAGGAGGAG 59.387 57.143 0.00 0.00 0.00 3.69
1870 2726 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1873 2729 1.231928 GGAGGAGGAGGAGGAGGAC 59.768 68.421 0.00 0.00 0.00 3.85
2007 2866 2.046314 CCTGAACGCGACCCCATT 60.046 61.111 15.93 0.00 0.00 3.16
2022 2881 3.923864 ATTCCCATCGCGCGGCTA 61.924 61.111 31.69 11.79 0.00 3.93
2212 3074 2.660552 CTGTTCACGTCGCGGGTT 60.661 61.111 6.13 0.00 0.00 4.11
2284 3146 1.590259 GAGGCCGCTCTTCATCGTC 60.590 63.158 0.00 0.00 0.00 4.20
2306 3168 0.322975 GCCATACTCCATCATCGCCT 59.677 55.000 0.00 0.00 0.00 5.52
2340 3202 9.750783 ATTAATCCAAATAAGAGGATCATCAGG 57.249 33.333 10.44 1.96 43.67 3.86
2343 3205 2.758736 ATAAGAGGATCATCAGGCGC 57.241 50.000 10.44 0.00 37.82 6.53
2366 3228 7.264373 GCACCATTGCTAGTAGTTAATCAAT 57.736 36.000 0.00 0.00 46.17 2.57
2367 3229 7.134815 GCACCATTGCTAGTAGTTAATCAATG 58.865 38.462 15.27 15.27 46.17 2.82
2411 3273 7.769220 TCAATCTAGTACCTAGTTGTTGTAGC 58.231 38.462 0.00 0.00 35.72 3.58
2412 3274 7.614583 TCAATCTAGTACCTAGTTGTTGTAGCT 59.385 37.037 0.00 0.00 35.72 3.32
2413 3275 6.754702 TCTAGTACCTAGTTGTTGTAGCTG 57.245 41.667 0.00 0.00 35.72 4.24
2475 3337 4.640771 ACCTTGCTCTTGTCCTATCAAA 57.359 40.909 0.00 0.00 0.00 2.69
2522 3401 2.983592 CCACTCCGGTTGGTTGGC 60.984 66.667 14.69 0.00 34.23 4.52
2562 3441 0.595095 GCTGGTTCTGTCTTGCCAAG 59.405 55.000 0.00 0.00 0.00 3.61
2567 3446 2.489722 GGTTCTGTCTTGCCAAGAATCC 59.510 50.000 9.08 4.13 39.67 3.01
2619 3499 3.316029 CCAAATTAATCATCGCAGCTCCA 59.684 43.478 0.00 0.00 0.00 3.86
2620 3500 4.534168 CAAATTAATCATCGCAGCTCCAG 58.466 43.478 0.00 0.00 0.00 3.86
2621 3501 2.988010 TTAATCATCGCAGCTCCAGT 57.012 45.000 0.00 0.00 0.00 4.00
2622 3502 2.229675 TAATCATCGCAGCTCCAGTG 57.770 50.000 0.00 0.00 0.00 3.66
2623 3503 0.251354 AATCATCGCAGCTCCAGTGT 59.749 50.000 0.00 0.00 0.00 3.55
2624 3504 1.114627 ATCATCGCAGCTCCAGTGTA 58.885 50.000 0.00 0.00 0.00 2.90
2668 3667 9.141400 AGTAGAGTTGAGACAATTAATTTCGAC 57.859 33.333 9.42 9.42 0.00 4.20
2671 3670 7.118390 AGAGTTGAGACAATTAATTTCGACCAG 59.882 37.037 12.30 0.00 0.00 4.00
2674 3673 6.697395 TGAGACAATTAATTTCGACCAGAGA 58.303 36.000 0.00 0.00 0.00 3.10
2675 3674 7.158697 TGAGACAATTAATTTCGACCAGAGAA 58.841 34.615 0.00 0.00 0.00 2.87
2690 3689 4.712337 ACCAGAGAAAGTAGGTGATTCGAT 59.288 41.667 0.00 0.00 32.04 3.59
2692 3691 5.751028 CCAGAGAAAGTAGGTGATTCGATTC 59.249 44.000 0.29 0.29 0.00 2.52
2696 3695 8.865090 AGAGAAAGTAGGTGATTCGATTCATAT 58.135 33.333 12.73 7.62 0.00 1.78
2705 3704 9.862371 AGGTGATTCGATTCATATATTGTACTC 57.138 33.333 12.73 0.00 0.00 2.59
2717 3716 9.159254 TCATATATTGTACTCTCTTTGTCCCAT 57.841 33.333 0.00 0.00 0.00 4.00
2721 3720 6.428083 TTGTACTCTCTTTGTCCCATAACA 57.572 37.500 0.00 0.00 0.00 2.41
2722 3721 6.620877 TGTACTCTCTTTGTCCCATAACAT 57.379 37.500 0.00 0.00 0.00 2.71
2723 3722 7.727578 TGTACTCTCTTTGTCCCATAACATA 57.272 36.000 0.00 0.00 0.00 2.29
2724 3723 8.141298 TGTACTCTCTTTGTCCCATAACATAA 57.859 34.615 0.00 0.00 0.00 1.90
2725 3724 8.768397 TGTACTCTCTTTGTCCCATAACATAAT 58.232 33.333 0.00 0.00 0.00 1.28
2728 3727 8.993424 ACTCTCTTTGTCCCATAACATAATAGT 58.007 33.333 0.00 0.00 0.00 2.12
2729 3728 9.265901 CTCTCTTTGTCCCATAACATAATAGTG 57.734 37.037 0.00 0.00 0.00 2.74
2730 3729 8.768397 TCTCTTTGTCCCATAACATAATAGTGT 58.232 33.333 0.00 0.00 0.00 3.55
2731 3730 9.396022 CTCTTTGTCCCATAACATAATAGTGTT 57.604 33.333 0.00 0.00 44.09 3.32
2732 3731 9.747898 TCTTTGTCCCATAACATAATAGTGTTT 57.252 29.630 0.00 0.00 42.08 2.83
2757 3756 3.152261 CACTAAAAACGTTTGGTGCCA 57.848 42.857 15.46 0.00 45.51 4.92
2758 3757 3.512680 CACTAAAAACGTTTGGTGCCAA 58.487 40.909 15.46 0.00 45.51 4.52
2759 3758 3.927142 CACTAAAAACGTTTGGTGCCAAA 59.073 39.130 15.46 11.94 45.51 3.28
2760 3759 4.389077 CACTAAAAACGTTTGGTGCCAAAA 59.611 37.500 15.46 0.69 45.51 2.44
2761 3760 4.995487 ACTAAAAACGTTTGGTGCCAAAAA 59.005 33.333 15.46 0.00 45.86 1.94
2762 3761 3.815337 AAAACGTTTGGTGCCAAAAAC 57.185 38.095 15.46 6.81 45.86 2.43
2767 3766 2.612604 GTTTGGTGCCAAAAACGTTCT 58.387 42.857 16.89 0.00 45.86 3.01
2768 3767 2.997303 GTTTGGTGCCAAAAACGTTCTT 59.003 40.909 16.89 0.00 45.86 2.52
2769 3768 4.174762 GTTTGGTGCCAAAAACGTTCTTA 58.825 39.130 16.89 0.00 45.86 2.10
2770 3769 4.657436 TTGGTGCCAAAAACGTTCTTAT 57.343 36.364 0.00 0.00 32.44 1.73
2771 3770 5.769484 TTGGTGCCAAAAACGTTCTTATA 57.231 34.783 0.00 0.00 32.44 0.98
2772 3771 5.968528 TGGTGCCAAAAACGTTCTTATAT 57.031 34.783 0.00 0.00 0.00 0.86
2773 3772 5.945155 TGGTGCCAAAAACGTTCTTATATC 58.055 37.500 0.00 0.00 0.00 1.63
2774 3773 5.473846 TGGTGCCAAAAACGTTCTTATATCA 59.526 36.000 0.00 0.00 0.00 2.15
2775 3774 5.798434 GGTGCCAAAAACGTTCTTATATCAC 59.202 40.000 0.00 4.58 0.00 3.06
2776 3775 5.506832 GTGCCAAAAACGTTCTTATATCACG 59.493 40.000 0.00 0.00 39.86 4.35
2777 3776 5.025826 GCCAAAAACGTTCTTATATCACGG 58.974 41.667 0.00 0.00 38.26 4.94
2778 3777 5.565695 CCAAAAACGTTCTTATATCACGGG 58.434 41.667 0.00 0.00 38.26 5.28
2779 3778 5.352016 CCAAAAACGTTCTTATATCACGGGA 59.648 40.000 0.00 0.00 38.26 5.14
2780 3779 6.245724 CAAAAACGTTCTTATATCACGGGAC 58.754 40.000 0.00 0.00 38.26 4.46
2781 3780 4.724074 AACGTTCTTATATCACGGGACA 57.276 40.909 0.00 0.00 38.26 4.02
2782 3781 4.724074 ACGTTCTTATATCACGGGACAA 57.276 40.909 0.00 0.00 38.26 3.18
2783 3782 5.075858 ACGTTCTTATATCACGGGACAAA 57.924 39.130 0.00 0.00 38.26 2.83
2784 3783 5.481105 ACGTTCTTATATCACGGGACAAAA 58.519 37.500 0.00 0.00 38.26 2.44
2785 3784 5.579511 ACGTTCTTATATCACGGGACAAAAG 59.420 40.000 0.00 0.00 38.26 2.27
2786 3785 5.006358 CGTTCTTATATCACGGGACAAAAGG 59.994 44.000 0.00 0.00 0.00 3.11
2787 3786 5.031066 TCTTATATCACGGGACAAAAGGG 57.969 43.478 0.00 0.00 0.00 3.95
2788 3787 4.717778 TCTTATATCACGGGACAAAAGGGA 59.282 41.667 0.00 0.00 0.00 4.20
2789 3788 3.560636 ATATCACGGGACAAAAGGGAG 57.439 47.619 0.00 0.00 0.00 4.30
2790 3789 1.064825 ATCACGGGACAAAAGGGAGT 58.935 50.000 0.00 0.00 0.00 3.85
2791 3790 1.719529 TCACGGGACAAAAGGGAGTA 58.280 50.000 0.00 0.00 0.00 2.59
2792 3791 2.262637 TCACGGGACAAAAGGGAGTAT 58.737 47.619 0.00 0.00 0.00 2.12
2793 3792 3.443052 TCACGGGACAAAAGGGAGTATA 58.557 45.455 0.00 0.00 0.00 1.47
2794 3793 3.839490 TCACGGGACAAAAGGGAGTATAA 59.161 43.478 0.00 0.00 0.00 0.98
2795 3794 4.472108 TCACGGGACAAAAGGGAGTATAAT 59.528 41.667 0.00 0.00 0.00 1.28
2796 3795 4.574828 CACGGGACAAAAGGGAGTATAATG 59.425 45.833 0.00 0.00 0.00 1.90
2797 3796 3.564225 CGGGACAAAAGGGAGTATAATGC 59.436 47.826 0.00 0.00 0.00 3.56
2798 3797 4.686122 CGGGACAAAAGGGAGTATAATGCT 60.686 45.833 0.00 0.00 0.00 3.79
2799 3798 5.454187 CGGGACAAAAGGGAGTATAATGCTA 60.454 44.000 0.00 0.00 0.00 3.49
2800 3799 6.362248 GGGACAAAAGGGAGTATAATGCTAA 58.638 40.000 0.00 0.00 0.00 3.09
2801 3800 6.831868 GGGACAAAAGGGAGTATAATGCTAAA 59.168 38.462 0.00 0.00 0.00 1.85
2802 3801 7.505923 GGGACAAAAGGGAGTATAATGCTAAAT 59.494 37.037 0.00 0.00 0.00 1.40
2803 3802 8.914011 GGACAAAAGGGAGTATAATGCTAAATT 58.086 33.333 0.00 0.00 0.00 1.82
2821 3820 6.528072 GCTAAATTTAACTGTAGCAAGCCTTG 59.472 38.462 9.53 0.00 39.03 3.61
2822 3821 6.648879 AAATTTAACTGTAGCAAGCCTTGA 57.351 33.333 9.04 0.00 0.00 3.02
2845 3844 1.167851 CGAAGGCTTTTGATCCTGCA 58.832 50.000 0.00 0.00 32.00 4.41
2857 3856 1.300963 TCCTGCATGGAGGAAGCAC 59.699 57.895 31.59 0.00 39.32 4.40
2859 3858 1.376424 CTGCATGGAGGAAGCACGT 60.376 57.895 6.28 0.00 34.13 4.49
2876 3875 8.231837 GGAAGCACGTAATGAACTTAATTTGTA 58.768 33.333 0.00 0.00 0.00 2.41
2889 3888 8.685838 AACTTAATTTGTACAAGTAGGAAGCA 57.314 30.769 8.56 0.00 32.35 3.91
2893 3892 5.957842 TTTGTACAAGTAGGAAGCATTGG 57.042 39.130 8.56 0.00 0.00 3.16
2895 3894 3.585289 TGTACAAGTAGGAAGCATTGGGA 59.415 43.478 0.00 0.00 0.00 4.37
2900 3899 5.652452 ACAAGTAGGAAGCATTGGGATTAAC 59.348 40.000 0.00 0.00 0.00 2.01
2906 3905 4.438744 GGAAGCATTGGGATTAACGTCAAG 60.439 45.833 0.00 0.00 0.00 3.02
2908 3907 3.941483 AGCATTGGGATTAACGTCAAGAG 59.059 43.478 0.00 0.00 0.00 2.85
2909 3908 3.487544 GCATTGGGATTAACGTCAAGAGC 60.488 47.826 0.00 0.00 0.00 4.09
2910 3909 3.410631 TTGGGATTAACGTCAAGAGCA 57.589 42.857 0.00 0.00 0.00 4.26
2911 3910 2.972625 TGGGATTAACGTCAAGAGCAG 58.027 47.619 0.00 0.00 0.00 4.24
2912 3911 2.301870 TGGGATTAACGTCAAGAGCAGT 59.698 45.455 0.00 0.00 0.00 4.40
2914 3913 2.094417 GGATTAACGTCAAGAGCAGTGC 59.906 50.000 7.13 7.13 0.00 4.40
2915 3914 2.526304 TTAACGTCAAGAGCAGTGCT 57.474 45.000 19.86 19.86 43.88 4.40
2916 3915 3.653539 TTAACGTCAAGAGCAGTGCTA 57.346 42.857 19.77 0.00 39.88 3.49
2917 3916 1.784525 AACGTCAAGAGCAGTGCTAC 58.215 50.000 19.77 11.75 39.88 3.58
2919 3918 1.273606 ACGTCAAGAGCAGTGCTACAT 59.726 47.619 19.77 4.19 39.88 2.29
2920 3919 1.657594 CGTCAAGAGCAGTGCTACATG 59.342 52.381 19.77 16.72 39.88 3.21
2931 3930 2.081526 GCTACATGCACGACACTGG 58.918 57.895 0.00 0.00 42.31 4.00
2934 3933 3.792047 CATGCACGACACTGGCCG 61.792 66.667 0.00 0.00 0.00 6.13
2941 3940 3.986006 GACACTGGCCGGACGACA 61.986 66.667 21.41 0.00 0.00 4.35
2942 3941 3.296709 GACACTGGCCGGACGACAT 62.297 63.158 21.41 0.00 0.00 3.06
2943 3942 2.815211 CACTGGCCGGACGACATG 60.815 66.667 21.41 0.00 0.00 3.21
2944 3943 4.760047 ACTGGCCGGACGACATGC 62.760 66.667 21.41 0.00 0.00 4.06
2945 3944 4.758251 CTGGCCGGACGACATGCA 62.758 66.667 5.28 0.00 0.00 3.96
2946 3945 4.758251 TGGCCGGACGACATGCAG 62.758 66.667 5.05 0.00 0.00 4.41
2947 3946 4.451150 GGCCGGACGACATGCAGA 62.451 66.667 5.05 0.00 0.00 4.26
2948 3947 3.188786 GCCGGACGACATGCAGAC 61.189 66.667 5.05 0.00 0.00 3.51
2949 3948 2.880879 CCGGACGACATGCAGACG 60.881 66.667 0.00 8.09 41.15 4.18
2951 3950 1.226688 CGGACGACATGCAGACGAT 60.227 57.895 14.84 2.19 38.73 3.73
2952 3951 0.028902 CGGACGACATGCAGACGATA 59.971 55.000 14.84 0.00 38.73 2.92
2953 3952 1.335051 CGGACGACATGCAGACGATAT 60.335 52.381 14.84 0.00 38.73 1.63
2955 3954 2.287608 GGACGACATGCAGACGATATGA 60.288 50.000 14.84 0.00 38.73 2.15
2956 3955 2.721603 GACGACATGCAGACGATATGAC 59.278 50.000 14.84 0.00 38.73 3.06
2957 3956 2.099098 ACGACATGCAGACGATATGACA 59.901 45.455 14.84 0.00 38.73 3.58
2958 3957 3.243535 ACGACATGCAGACGATATGACAT 60.244 43.478 14.84 0.00 38.73 3.06
2959 3958 4.023193 ACGACATGCAGACGATATGACATA 60.023 41.667 14.84 0.00 38.73 2.29
2960 3959 5.098211 CGACATGCAGACGATATGACATAT 58.902 41.667 7.70 7.70 37.60 1.78
2961 3960 5.228843 CGACATGCAGACGATATGACATATC 59.771 44.000 21.06 21.06 37.60 1.63
2962 3961 5.414360 ACATGCAGACGATATGACATATCC 58.586 41.667 23.69 14.03 38.70 2.59
2963 3962 4.456280 TGCAGACGATATGACATATCCC 57.544 45.455 23.69 17.29 38.70 3.85
2964 3963 3.831911 TGCAGACGATATGACATATCCCA 59.168 43.478 23.69 13.28 38.70 4.37
2965 3964 4.467438 TGCAGACGATATGACATATCCCAT 59.533 41.667 23.69 13.20 38.70 4.00
2966 3965 5.046529 GCAGACGATATGACATATCCCATC 58.953 45.833 23.69 18.99 38.70 3.51
2967 3966 5.394553 GCAGACGATATGACATATCCCATCA 60.395 44.000 23.69 0.00 38.70 3.07
2968 3967 6.684865 GCAGACGATATGACATATCCCATCAT 60.685 42.308 23.69 7.82 38.70 2.45
2969 3968 6.922407 CAGACGATATGACATATCCCATCATC 59.078 42.308 23.69 14.07 38.70 2.92
2970 3969 6.608808 AGACGATATGACATATCCCATCATCA 59.391 38.462 23.69 0.00 38.70 3.07
2971 3970 7.124750 AGACGATATGACATATCCCATCATCAA 59.875 37.037 23.69 0.00 38.70 2.57
2972 3971 7.623630 ACGATATGACATATCCCATCATCAAA 58.376 34.615 23.69 0.00 38.70 2.69
2973 3972 7.767659 ACGATATGACATATCCCATCATCAAAG 59.232 37.037 23.69 11.44 38.70 2.77
2974 3973 7.767659 CGATATGACATATCCCATCATCAAAGT 59.232 37.037 23.69 0.00 38.70 2.66
2975 3974 9.107177 GATATGACATATCCCATCATCAAAGTC 57.893 37.037 20.55 0.00 36.48 3.01
2976 3975 5.624159 TGACATATCCCATCATCAAAGTCC 58.376 41.667 0.00 0.00 0.00 3.85
2977 3976 5.132480 TGACATATCCCATCATCAAAGTCCA 59.868 40.000 0.00 0.00 0.00 4.02
2978 3977 6.017211 ACATATCCCATCATCAAAGTCCAA 57.983 37.500 0.00 0.00 0.00 3.53
2979 3978 6.066690 ACATATCCCATCATCAAAGTCCAAG 58.933 40.000 0.00 0.00 0.00 3.61
2980 3979 3.370840 TCCCATCATCAAAGTCCAAGG 57.629 47.619 0.00 0.00 0.00 3.61
2981 3980 1.753073 CCCATCATCAAAGTCCAAGGC 59.247 52.381 0.00 0.00 0.00 4.35
2982 3981 2.449464 CCATCATCAAAGTCCAAGGCA 58.551 47.619 0.00 0.00 0.00 4.75
2983 3982 2.827322 CCATCATCAAAGTCCAAGGCAA 59.173 45.455 0.00 0.00 0.00 4.52
2984 3983 3.258872 CCATCATCAAAGTCCAAGGCAAA 59.741 43.478 0.00 0.00 0.00 3.68
2985 3984 4.262549 CCATCATCAAAGTCCAAGGCAAAA 60.263 41.667 0.00 0.00 0.00 2.44
2986 3985 4.320608 TCATCAAAGTCCAAGGCAAAAC 57.679 40.909 0.00 0.00 0.00 2.43
2987 3986 2.861462 TCAAAGTCCAAGGCAAAACG 57.139 45.000 0.00 0.00 0.00 3.60
2988 3987 2.096248 TCAAAGTCCAAGGCAAAACGT 58.904 42.857 0.00 0.00 0.00 3.99
2989 3988 2.098443 TCAAAGTCCAAGGCAAAACGTC 59.902 45.455 0.00 0.00 0.00 4.34
2990 3989 2.052782 AAGTCCAAGGCAAAACGTCT 57.947 45.000 0.00 0.00 0.00 4.18
2991 3990 2.052782 AGTCCAAGGCAAAACGTCTT 57.947 45.000 0.00 0.00 41.41 3.01
2992 3991 1.947456 AGTCCAAGGCAAAACGTCTTC 59.053 47.619 0.00 0.00 37.50 2.87
2993 3992 1.673920 GTCCAAGGCAAAACGTCTTCA 59.326 47.619 0.00 0.00 37.50 3.02
2994 3993 1.946768 TCCAAGGCAAAACGTCTTCAG 59.053 47.619 0.00 0.00 37.50 3.02
2995 3994 1.676006 CCAAGGCAAAACGTCTTCAGT 59.324 47.619 0.00 0.00 37.50 3.41
2996 3995 2.541588 CCAAGGCAAAACGTCTTCAGTG 60.542 50.000 0.00 0.00 37.50 3.66
2997 3996 1.308998 AGGCAAAACGTCTTCAGTGG 58.691 50.000 0.00 0.00 0.00 4.00
2998 3997 1.021968 GGCAAAACGTCTTCAGTGGT 58.978 50.000 0.00 0.00 0.00 4.16
2999 3998 1.404035 GGCAAAACGTCTTCAGTGGTT 59.596 47.619 0.00 0.00 0.00 3.67
3000 3999 2.450160 GCAAAACGTCTTCAGTGGTTG 58.550 47.619 0.00 0.00 0.00 3.77
3001 4000 2.794631 GCAAAACGTCTTCAGTGGTTGG 60.795 50.000 0.00 0.00 0.00 3.77
3002 4001 2.680841 CAAAACGTCTTCAGTGGTTGGA 59.319 45.455 0.00 0.00 0.00 3.53
3003 4002 2.930826 AACGTCTTCAGTGGTTGGAT 57.069 45.000 0.00 0.00 0.00 3.41
3004 4003 2.930826 ACGTCTTCAGTGGTTGGATT 57.069 45.000 0.00 0.00 0.00 3.01
3005 4004 4.345859 AACGTCTTCAGTGGTTGGATTA 57.654 40.909 0.00 0.00 0.00 1.75
3006 4005 3.926616 ACGTCTTCAGTGGTTGGATTAG 58.073 45.455 0.00 0.00 0.00 1.73
3007 4006 2.673368 CGTCTTCAGTGGTTGGATTAGC 59.327 50.000 0.00 0.00 0.00 3.09
3008 4007 3.617531 CGTCTTCAGTGGTTGGATTAGCT 60.618 47.826 0.00 0.00 0.00 3.32
3009 4008 4.381612 CGTCTTCAGTGGTTGGATTAGCTA 60.382 45.833 0.00 0.00 0.00 3.32
3010 4009 5.675538 GTCTTCAGTGGTTGGATTAGCTAT 58.324 41.667 0.00 0.00 0.00 2.97
3011 4010 5.755861 GTCTTCAGTGGTTGGATTAGCTATC 59.244 44.000 0.00 0.00 0.00 2.08
3012 4011 5.425217 TCTTCAGTGGTTGGATTAGCTATCA 59.575 40.000 0.00 0.00 34.77 2.15
3013 4012 5.894298 TCAGTGGTTGGATTAGCTATCAT 57.106 39.130 0.00 0.00 34.77 2.45
3014 4013 5.858381 TCAGTGGTTGGATTAGCTATCATC 58.142 41.667 0.00 0.00 34.77 2.92
3015 4014 4.999950 CAGTGGTTGGATTAGCTATCATCC 59.000 45.833 15.09 15.09 39.72 3.51
3016 4015 4.910304 AGTGGTTGGATTAGCTATCATCCT 59.090 41.667 20.35 2.17 39.94 3.24
3017 4016 5.012561 AGTGGTTGGATTAGCTATCATCCTC 59.987 44.000 20.35 14.51 39.94 3.71
3018 4017 4.907269 TGGTTGGATTAGCTATCATCCTCA 59.093 41.667 20.35 14.44 39.94 3.86
3019 4018 5.549228 TGGTTGGATTAGCTATCATCCTCAT 59.451 40.000 20.35 0.00 39.94 2.90
3020 4019 5.879223 GGTTGGATTAGCTATCATCCTCATG 59.121 44.000 20.35 0.00 39.94 3.07
3021 4020 6.471146 GTTGGATTAGCTATCATCCTCATGT 58.529 40.000 20.35 0.00 39.94 3.21
3022 4021 6.291648 TGGATTAGCTATCATCCTCATGTC 57.708 41.667 20.35 0.00 39.94 3.06
3023 4022 5.105595 TGGATTAGCTATCATCCTCATGTCG 60.106 44.000 20.35 0.00 39.94 4.35
3024 4023 5.105554 GGATTAGCTATCATCCTCATGTCGT 60.106 44.000 14.79 0.00 36.72 4.34
3025 4024 5.791336 TTAGCTATCATCCTCATGTCGTT 57.209 39.130 0.00 0.00 0.00 3.85
3026 4025 4.250116 AGCTATCATCCTCATGTCGTTC 57.750 45.455 0.00 0.00 0.00 3.95
3027 4026 3.638627 AGCTATCATCCTCATGTCGTTCA 59.361 43.478 0.00 0.00 0.00 3.18
3028 4027 4.282957 AGCTATCATCCTCATGTCGTTCAT 59.717 41.667 0.00 0.00 37.22 2.57
3029 4028 4.993584 GCTATCATCCTCATGTCGTTCATT 59.006 41.667 0.00 0.00 34.09 2.57
3030 4029 5.107182 GCTATCATCCTCATGTCGTTCATTG 60.107 44.000 0.00 0.00 34.09 2.82
3031 4030 3.534554 TCATCCTCATGTCGTTCATTGG 58.465 45.455 0.00 0.00 34.09 3.16
3032 4031 3.197549 TCATCCTCATGTCGTTCATTGGA 59.802 43.478 12.68 12.68 39.31 3.53
3033 4032 3.694043 TCCTCATGTCGTTCATTGGAA 57.306 42.857 0.00 0.00 35.30 3.53
3042 4041 3.412722 TTCATTGGAACTGCCGTGT 57.587 47.368 0.00 0.00 40.66 4.49
3043 4042 0.950836 TTCATTGGAACTGCCGTGTG 59.049 50.000 0.00 0.00 40.66 3.82
3044 4043 0.179032 TCATTGGAACTGCCGTGTGT 60.179 50.000 0.00 0.00 40.66 3.72
3045 4044 0.040157 CATTGGAACTGCCGTGTGTG 60.040 55.000 0.00 0.00 40.66 3.82
3046 4045 0.465460 ATTGGAACTGCCGTGTGTGT 60.465 50.000 0.00 0.00 40.66 3.72
3047 4046 0.178301 TTGGAACTGCCGTGTGTGTA 59.822 50.000 0.00 0.00 40.66 2.90
3048 4047 0.249699 TGGAACTGCCGTGTGTGTAG 60.250 55.000 0.00 0.00 40.66 2.74
3049 4048 0.249741 GGAACTGCCGTGTGTGTAGT 60.250 55.000 0.00 0.00 0.00 2.73
3050 4049 1.000060 GGAACTGCCGTGTGTGTAGTA 60.000 52.381 0.00 0.00 0.00 1.82
3051 4050 2.325761 GAACTGCCGTGTGTGTAGTAG 58.674 52.381 0.00 0.00 0.00 2.57
3052 4051 1.325355 ACTGCCGTGTGTGTAGTAGT 58.675 50.000 0.00 0.00 0.00 2.73
3053 4052 1.684983 ACTGCCGTGTGTGTAGTAGTT 59.315 47.619 0.00 0.00 0.00 2.24
3054 4053 2.101917 ACTGCCGTGTGTGTAGTAGTTT 59.898 45.455 0.00 0.00 0.00 2.66
3055 4054 2.729882 CTGCCGTGTGTGTAGTAGTTTC 59.270 50.000 0.00 0.00 0.00 2.78
3056 4055 1.717645 GCCGTGTGTGTAGTAGTTTCG 59.282 52.381 0.00 0.00 0.00 3.46
3057 4056 2.859806 GCCGTGTGTGTAGTAGTTTCGT 60.860 50.000 0.00 0.00 0.00 3.85
3058 4057 3.609175 GCCGTGTGTGTAGTAGTTTCGTA 60.609 47.826 0.00 0.00 0.00 3.43
3059 4058 4.536065 CCGTGTGTGTAGTAGTTTCGTAA 58.464 43.478 0.00 0.00 0.00 3.18
3060 4059 4.379793 CCGTGTGTGTAGTAGTTTCGTAAC 59.620 45.833 0.00 0.00 34.36 2.50
3061 4060 4.969395 CGTGTGTGTAGTAGTTTCGTAACA 59.031 41.667 7.69 0.00 36.70 2.41
3062 4061 5.626543 CGTGTGTGTAGTAGTTTCGTAACAT 59.373 40.000 7.69 0.00 36.70 2.71
3063 4062 6.183359 CGTGTGTGTAGTAGTTTCGTAACATC 60.183 42.308 7.69 0.21 36.70 3.06
3064 4063 6.638063 GTGTGTGTAGTAGTTTCGTAACATCA 59.362 38.462 7.69 0.00 36.70 3.07
3065 4064 7.167968 GTGTGTGTAGTAGTTTCGTAACATCAA 59.832 37.037 7.69 0.00 36.70 2.57
3066 4065 7.868922 TGTGTGTAGTAGTTTCGTAACATCAAT 59.131 33.333 7.69 0.00 36.70 2.57
3067 4066 8.160342 GTGTGTAGTAGTTTCGTAACATCAATG 58.840 37.037 7.69 0.00 36.70 2.82
3068 4067 8.083462 TGTGTAGTAGTTTCGTAACATCAATGA 58.917 33.333 7.69 0.00 36.70 2.57
3069 4068 9.084164 GTGTAGTAGTTTCGTAACATCAATGAT 57.916 33.333 7.69 0.00 36.70 2.45
3070 4069 9.083080 TGTAGTAGTTTCGTAACATCAATGATG 57.917 33.333 20.58 20.58 44.71 3.07
3071 4070 9.297586 GTAGTAGTTTCGTAACATCAATGATGA 57.702 33.333 27.86 5.39 42.09 2.92
3072 4071 8.186178 AGTAGTTTCGTAACATCAATGATGAC 57.814 34.615 27.86 15.90 42.09 3.06
3073 4072 7.817478 AGTAGTTTCGTAACATCAATGATGACA 59.183 33.333 27.86 12.80 42.09 3.58
3074 4073 7.615582 AGTTTCGTAACATCAATGATGACAT 57.384 32.000 27.86 15.76 42.09 3.06
3075 4074 7.466805 AGTTTCGTAACATCAATGATGACATG 58.533 34.615 27.86 18.54 42.09 3.21
3076 4075 5.989551 TCGTAACATCAATGATGACATGG 57.010 39.130 27.86 13.16 42.09 3.66
3077 4076 4.273235 TCGTAACATCAATGATGACATGGC 59.727 41.667 27.86 11.13 42.09 4.40
3078 4077 4.555313 CGTAACATCAATGATGACATGGCC 60.555 45.833 27.86 0.00 42.09 5.36
3079 4078 2.313317 ACATCAATGATGACATGGCCC 58.687 47.619 27.86 0.00 42.09 5.80
3080 4079 2.312390 CATCAATGATGACATGGCCCA 58.688 47.619 17.76 0.00 42.09 5.36
3081 4080 2.061509 TCAATGATGACATGGCCCAG 57.938 50.000 0.00 0.00 36.79 4.45
3082 4081 1.565288 TCAATGATGACATGGCCCAGA 59.435 47.619 0.00 0.00 36.79 3.86
3083 4082 2.025131 TCAATGATGACATGGCCCAGAA 60.025 45.455 0.00 0.00 36.79 3.02
3097 4096 1.436983 CCAGAACCTTTATCCCGCGC 61.437 60.000 0.00 0.00 0.00 6.86
3114 4113 3.301906 CCGCGCTCTCTTCAATATTATCG 59.698 47.826 5.56 0.00 0.00 2.92
3116 4115 4.795795 CGCGCTCTCTTCAATATTATCGAT 59.204 41.667 5.56 2.16 0.00 3.59
3134 4133 8.552083 TTATCGATGATATGCTTGCAATACTT 57.448 30.769 8.54 0.00 0.00 2.24
3139 4138 7.695201 CGATGATATGCTTGCAATACTTATTGG 59.305 37.037 0.00 0.00 42.46 3.16
3147 4146 4.377021 TGCAATACTTATTGGTAGAGCCG 58.623 43.478 10.32 0.00 42.46 5.52
3181 4180 3.320256 CAGATCGGAGGATTGATCTCACA 59.680 47.826 1.92 0.00 46.32 3.58
3210 4209 2.961526 TGGCTGAGTTTCGATCCTAC 57.038 50.000 0.00 0.00 0.00 3.18
3217 4216 5.986135 GCTGAGTTTCGATCCTACAATATGT 59.014 40.000 0.00 0.00 0.00 2.29
3230 5323 8.681486 TCCTACAATATGTGGATGAAAAGATG 57.319 34.615 0.00 0.00 29.57 2.90
3258 5384 8.545229 AATCTAAATCTACATCTAGTGCATGC 57.455 34.615 11.82 11.82 0.00 4.06
3261 5387 5.453567 AATCTACATCTAGTGCATGCGTA 57.546 39.130 14.09 6.31 0.00 4.42
3277 5403 1.810031 GCGTAGATGGCATGGCAGTAA 60.810 52.381 27.02 11.70 0.00 2.24
3279 5405 3.141398 CGTAGATGGCATGGCAGTAAAT 58.859 45.455 27.02 10.20 0.00 1.40
3282 5408 5.334105 CGTAGATGGCATGGCAGTAAATAAC 60.334 44.000 27.02 15.39 0.00 1.89
3286 5412 5.736951 TGGCATGGCAGTAAATAACTTTT 57.263 34.783 19.43 0.00 35.76 2.27
3287 5413 6.107901 TGGCATGGCAGTAAATAACTTTTT 57.892 33.333 19.43 0.00 35.76 1.94
3362 5491 2.881074 CTTCTGTAGCGTACTGTGCAT 58.119 47.619 0.00 0.00 33.85 3.96
3367 5496 2.066262 GTAGCGTACTGTGCATGTGTT 58.934 47.619 0.00 0.00 33.85 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.901948 AGAGACGACGCCAGTTGGA 60.902 57.895 1.45 0.00 37.39 3.53
2 3 1.734477 CCAGAGACGACGCCAGTTG 60.734 63.158 0.00 0.00 37.77 3.16
3 4 2.201022 ACCAGAGACGACGCCAGTT 61.201 57.895 0.00 0.00 0.00 3.16
4 5 2.597805 ACCAGAGACGACGCCAGT 60.598 61.111 0.00 0.00 0.00 4.00
5 6 2.126307 CACCAGAGACGACGCCAG 60.126 66.667 0.00 0.00 0.00 4.85
6 7 3.680786 CCACCAGAGACGACGCCA 61.681 66.667 0.00 0.00 0.00 5.69
10 11 0.173708 CTAAGGCCACCAGAGACGAC 59.826 60.000 5.01 0.00 0.00 4.34
61 63 0.615331 AAAAGGAGCCATCTCGCTGA 59.385 50.000 0.00 0.00 39.87 4.26
67 69 4.202567 TGAACACCTAAAAAGGAGCCATCT 60.203 41.667 0.00 0.00 0.00 2.90
70 72 3.586470 TGAACACCTAAAAAGGAGCCA 57.414 42.857 0.00 0.00 0.00 4.75
90 93 7.094506 GGACACAAACCCTAATAAAACTCGAAT 60.095 37.037 0.00 0.00 0.00 3.34
101 104 5.491078 TCCTGATAAGGACACAAACCCTAAT 59.509 40.000 0.00 0.00 32.09 1.73
118 121 3.695060 GTCACCGTCTCTTCTTCCTGATA 59.305 47.826 0.00 0.00 0.00 2.15
119 122 2.494073 GTCACCGTCTCTTCTTCCTGAT 59.506 50.000 0.00 0.00 0.00 2.90
129 132 3.063084 GGAGCCGTCACCGTCTCT 61.063 66.667 0.00 0.00 39.00 3.10
149 152 3.010250 GGGGAGTACCTTGTTCCATCTTT 59.990 47.826 0.00 0.00 40.03 2.52
159 162 1.436336 CTACGCGGGGAGTACCTTG 59.564 63.158 12.47 0.00 40.03 3.61
207 212 1.003355 ACCTCCACACGCTCATTGG 60.003 57.895 0.00 0.00 0.00 3.16
209 214 0.603707 CACACCTCCACACGCTCATT 60.604 55.000 0.00 0.00 0.00 2.57
213 218 2.088674 GAGACACACCTCCACACGCT 62.089 60.000 0.00 0.00 0.00 5.07
258 263 2.159558 CGAACGAGAACCAGATCGAAGA 60.160 50.000 1.13 0.00 41.40 2.87
262 267 1.130749 AGACGAACGAGAACCAGATCG 59.869 52.381 0.14 0.00 44.36 3.69
272 277 0.517946 CACGACCGTAGACGAACGAG 60.518 60.000 20.53 12.79 45.68 4.18
274 279 1.056464 CACACGACCGTAGACGAACG 61.056 60.000 3.07 10.78 43.02 3.95
286 291 1.217882 CCAACCAGAAGACACACGAC 58.782 55.000 0.00 0.00 0.00 4.34
299 304 1.358152 AGATCGAAAGGACCCAACCA 58.642 50.000 0.00 0.00 0.00 3.67
327 332 3.061848 AACCGCCGCCATTGAAGG 61.062 61.111 0.00 0.00 0.00 3.46
353 358 1.680522 CTCCATAGGACCAGCGCACT 61.681 60.000 11.47 1.70 0.00 4.40
371 376 4.220821 TCGGAAAGTCATCTTGCTAAGACT 59.779 41.667 1.44 0.00 42.72 3.24
373 378 4.801330 TCGGAAAGTCATCTTGCTAAGA 57.199 40.909 1.85 1.85 42.69 2.10
381 386 5.923733 AGTAGACAATCGGAAAGTCATCT 57.076 39.130 13.40 8.94 34.80 2.90
384 389 7.211573 TGTTTTAGTAGACAATCGGAAAGTCA 58.788 34.615 13.40 0.84 34.80 3.41
405 410 2.296792 GGTGCCAGGCAAAATTTGTTT 58.703 42.857 18.28 0.00 41.47 2.83
457 464 1.235724 ACAAGCACTAAAACGAGCCC 58.764 50.000 0.00 0.00 0.00 5.19
480 487 4.755266 ATCCATAGACCACTTAGCGTTT 57.245 40.909 0.00 0.00 0.00 3.60
516 524 6.199531 GCGGTACAACGAACATCAGAAATATA 59.800 38.462 0.00 0.00 35.47 0.86
574 585 5.174035 CAGATAGATTACTCTTTTGTCGCGG 59.826 44.000 6.13 0.00 32.66 6.46
653 669 8.092687 GTCTTTTCACCTACATACTACTTTCCA 58.907 37.037 0.00 0.00 0.00 3.53
703 722 7.321153 TGTTTCCACTACTTACTAGCATCTTC 58.679 38.462 0.00 0.00 0.00 2.87
729 748 4.520492 CCCACTGTCTTCTGCTTTATTTGT 59.480 41.667 0.00 0.00 0.00 2.83
818 842 9.710818 TCTTTTCCTTAGGAGCTAATACTAGAA 57.289 33.333 0.00 0.00 31.21 2.10
819 843 9.710818 TTCTTTTCCTTAGGAGCTAATACTAGA 57.289 33.333 0.00 0.00 31.21 2.43
956 1367 4.332828 GAGGGTATTTATAGGCGGCAAAT 58.667 43.478 13.08 11.21 0.00 2.32
957 1368 3.497227 GGAGGGTATTTATAGGCGGCAAA 60.497 47.826 13.08 3.22 0.00 3.68
960 1371 1.065636 GGGAGGGTATTTATAGGCGGC 60.066 57.143 0.00 0.00 0.00 6.53
1008 1721 2.632996 TGTTGGGAGAAGTAGTGAGTGG 59.367 50.000 0.00 0.00 0.00 4.00
1009 1722 3.555168 GGTGTTGGGAGAAGTAGTGAGTG 60.555 52.174 0.00 0.00 0.00 3.51
1025 1738 2.223377 GGCTACTTTCGTCAAGGTGTTG 59.777 50.000 2.83 0.00 36.72 3.33
1032 1745 3.258372 AGTGAGATGGCTACTTTCGTCAA 59.742 43.478 0.00 0.00 0.00 3.18
1033 1746 2.826128 AGTGAGATGGCTACTTTCGTCA 59.174 45.455 0.00 0.00 0.00 4.35
1034 1747 3.440228 GAGTGAGATGGCTACTTTCGTC 58.560 50.000 0.00 0.00 0.00 4.20
1035 1748 2.159366 CGAGTGAGATGGCTACTTTCGT 60.159 50.000 0.00 0.00 0.00 3.85
1039 1752 2.166664 GGAACGAGTGAGATGGCTACTT 59.833 50.000 0.00 0.00 0.00 2.24
1056 1785 0.402121 AGGAAGGTTGCTGGAGGAAC 59.598 55.000 2.59 2.59 44.24 3.62
1074 1803 1.523258 CGCAGCCCAAGATGGAGAG 60.523 63.158 0.00 0.00 40.96 3.20
1098 1829 2.345641 GTCATCACGAACGATCAACAGG 59.654 50.000 0.14 0.00 0.00 4.00
1113 1849 3.621805 ACACCGCCACCGTCATCA 61.622 61.111 0.00 0.00 0.00 3.07
1152 1891 2.750637 GAGGGTGAGGAGCGACGA 60.751 66.667 0.00 0.00 0.00 4.20
1166 1908 3.190849 CGGCATGCGAGTGTGAGG 61.191 66.667 12.44 0.00 0.00 3.86
1210 1955 1.450134 GATGGCGCTCCACATGTCA 60.450 57.895 7.64 0.00 46.92 3.58
1422 2167 3.691342 TCTGGTGGGAAGTCGGCG 61.691 66.667 0.00 0.00 0.00 6.46
1423 2168 2.047179 GTCTGGTGGGAAGTCGGC 60.047 66.667 0.00 0.00 0.00 5.54
1424 2169 2.663196 GGTCTGGTGGGAAGTCGG 59.337 66.667 0.00 0.00 0.00 4.79
1495 2243 1.454847 CACCTCCTCCTCCTCCTCG 60.455 68.421 0.00 0.00 0.00 4.63
1567 2348 2.571757 GACATGGACGTCAGCGGA 59.428 61.111 18.91 0.00 43.45 5.54
1768 2549 0.675837 GCACCATGCTCTGCTTCTCA 60.676 55.000 0.00 0.00 40.96 3.27
1792 2573 0.108945 GCTTCTGGTTTCCATGCTGC 60.109 55.000 0.00 0.00 30.82 5.25
1794 2575 1.074405 TCAGCTTCTGGTTTCCATGCT 59.926 47.619 0.00 5.67 35.85 3.79
1795 2576 1.471684 CTCAGCTTCTGGTTTCCATGC 59.528 52.381 0.00 0.00 30.82 4.06
1796 2577 1.471684 GCTCAGCTTCTGGTTTCCATG 59.528 52.381 0.00 0.00 30.82 3.66
1797 2578 1.074405 TGCTCAGCTTCTGGTTTCCAT 59.926 47.619 0.00 0.00 30.82 3.41
1798 2579 0.473755 TGCTCAGCTTCTGGTTTCCA 59.526 50.000 0.00 0.00 31.51 3.53
1799 2580 1.471684 CATGCTCAGCTTCTGGTTTCC 59.528 52.381 0.00 0.00 31.51 3.13
1800 2581 1.471684 CCATGCTCAGCTTCTGGTTTC 59.528 52.381 0.00 0.00 31.51 2.78
1801 2582 1.202976 ACCATGCTCAGCTTCTGGTTT 60.203 47.619 11.91 0.00 34.68 3.27
1802 2583 0.403271 ACCATGCTCAGCTTCTGGTT 59.597 50.000 11.91 0.10 34.68 3.67
1812 2593 2.270257 GGCTGTTGCACCATGCTCA 61.270 57.895 2.02 1.45 45.31 4.26
1852 2696 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1870 2726 1.301479 GTCAACCACCTCCACGTCC 60.301 63.158 0.00 0.00 0.00 4.79
1873 2729 1.301716 CCTGTCAACCACCTCCACG 60.302 63.158 0.00 0.00 0.00 4.94
2030 2889 0.900182 TGAGCGGCTTCTTCCTCAGA 60.900 55.000 2.97 0.00 31.29 3.27
2139 3001 1.671901 CTCTTCCTCGTCCTCCTGGC 61.672 65.000 0.00 0.00 0.00 4.85
2141 3003 1.671901 GCCTCTTCCTCGTCCTCCTG 61.672 65.000 0.00 0.00 0.00 3.86
2212 3074 4.664267 AGCTCCTGCCTGTCCCCA 62.664 66.667 0.00 0.00 40.80 4.96
2284 3146 1.988063 CGATGATGGAGTATGGCTCG 58.012 55.000 0.00 0.00 45.03 5.03
2306 3168 8.948362 TCCTCTTATTTGGATTAATGATCAGGA 58.052 33.333 0.09 0.00 36.43 3.86
2366 3228 9.300681 AGATTGAAAATCTTAGTTGTTGATCCA 57.699 29.630 0.00 0.00 0.00 3.41
2396 3258 1.616865 TCGCAGCTACAACAACTAGGT 59.383 47.619 0.00 0.00 0.00 3.08
2437 3299 5.069914 AGCAAGGTACATTACATACCGATCA 59.930 40.000 0.00 0.00 45.84 2.92
2442 3304 6.113411 ACAAGAGCAAGGTACATTACATACC 58.887 40.000 0.00 0.00 42.22 2.73
2492 3354 2.294791 CCGGAGTGGAGCTCAAGTATAG 59.705 54.545 17.19 2.12 45.88 1.31
2522 3401 0.042708 GCGTGAATCATGCTAGCGTG 60.043 55.000 27.80 27.80 42.44 5.34
2526 3405 1.260825 CAGCTGCGTGAATCATGCTAG 59.739 52.381 25.44 20.57 45.53 3.42
2584 3463 9.484806 GATGATTAATTTGGATTGGAGGGATAT 57.515 33.333 0.00 0.00 0.00 1.63
2593 3473 5.526115 AGCTGCGATGATTAATTTGGATTG 58.474 37.500 0.00 0.00 0.00 2.67
2594 3474 5.278660 GGAGCTGCGATGATTAATTTGGATT 60.279 40.000 0.00 0.00 0.00 3.01
2633 3632 9.593134 AATTGTCTCAACTCTACTATAGCTTTG 57.407 33.333 0.00 0.00 0.00 2.77
2643 3642 8.381387 GGTCGAAATTAATTGTCTCAACTCTAC 58.619 37.037 0.39 0.00 0.00 2.59
2646 3645 7.117812 TCTGGTCGAAATTAATTGTCTCAACTC 59.882 37.037 0.39 0.00 0.00 3.01
2649 3648 7.158697 TCTCTGGTCGAAATTAATTGTCTCAA 58.841 34.615 0.39 0.00 0.00 3.02
2651 3650 7.596749 TTCTCTGGTCGAAATTAATTGTCTC 57.403 36.000 0.39 0.00 0.00 3.36
2652 3651 7.661847 ACTTTCTCTGGTCGAAATTAATTGTCT 59.338 33.333 0.39 0.00 30.75 3.41
2664 3663 3.150458 TCACCTACTTTCTCTGGTCGA 57.850 47.619 0.00 0.00 0.00 4.20
2665 3664 4.425520 GAATCACCTACTTTCTCTGGTCG 58.574 47.826 0.00 0.00 0.00 4.79
2668 3667 4.720649 TCGAATCACCTACTTTCTCTGG 57.279 45.455 0.00 0.00 0.00 3.86
2690 3689 8.988060 TGGGACAAAGAGAGTACAATATATGAA 58.012 33.333 0.00 0.00 31.92 2.57
2705 3704 9.396022 AACACTATTATGTTATGGGACAAAGAG 57.604 33.333 0.00 0.00 41.04 2.85
2730 3729 7.359849 GGCACCAAACGTTTTTAGTGTTAAAAA 60.360 33.333 24.95 2.11 43.12 1.94
2731 3730 6.090493 GGCACCAAACGTTTTTAGTGTTAAAA 59.910 34.615 24.95 0.00 36.87 1.52
2732 3731 5.575995 GGCACCAAACGTTTTTAGTGTTAAA 59.424 36.000 24.95 0.00 36.87 1.52
2733 3732 5.100943 GGCACCAAACGTTTTTAGTGTTAA 58.899 37.500 24.95 0.00 36.87 2.01
2734 3733 4.157289 TGGCACCAAACGTTTTTAGTGTTA 59.843 37.500 24.95 16.61 36.87 2.41
2735 3734 3.056749 TGGCACCAAACGTTTTTAGTGTT 60.057 39.130 24.95 0.46 36.87 3.32
2736 3735 2.492484 TGGCACCAAACGTTTTTAGTGT 59.508 40.909 24.95 11.84 36.87 3.55
2737 3736 3.152261 TGGCACCAAACGTTTTTAGTG 57.848 42.857 22.28 22.28 37.39 2.74
2738 3737 3.870633 TTGGCACCAAACGTTTTTAGT 57.129 38.095 11.66 6.55 32.44 2.24
2739 3738 5.317559 GTTTTTGGCACCAAACGTTTTTAG 58.682 37.500 11.66 5.87 44.39 1.85
2740 3739 4.143179 CGTTTTTGGCACCAAACGTTTTTA 60.143 37.500 25.17 0.00 44.04 1.52
2741 3740 3.364068 CGTTTTTGGCACCAAACGTTTTT 60.364 39.130 25.17 0.00 44.04 1.94
2742 3741 2.157863 CGTTTTTGGCACCAAACGTTTT 59.842 40.909 25.17 0.00 44.04 2.43
2743 3742 1.727335 CGTTTTTGGCACCAAACGTTT 59.273 42.857 25.17 7.96 44.04 3.60
2744 3743 1.351153 CGTTTTTGGCACCAAACGTT 58.649 45.000 25.17 0.00 44.04 3.99
2745 3744 3.037485 CGTTTTTGGCACCAAACGT 57.963 47.368 25.17 0.00 44.04 3.99
2747 3746 2.612604 AGAACGTTTTTGGCACCAAAC 58.387 42.857 14.31 10.24 44.39 2.93
2748 3747 3.320673 AAGAACGTTTTTGGCACCAAA 57.679 38.095 10.79 10.79 43.23 3.28
2749 3748 4.657436 ATAAGAACGTTTTTGGCACCAA 57.343 36.364 13.87 0.00 0.00 3.67
2750 3749 5.473846 TGATATAAGAACGTTTTTGGCACCA 59.526 36.000 13.87 3.58 0.00 4.17
2751 3750 5.798434 GTGATATAAGAACGTTTTTGGCACC 59.202 40.000 13.87 1.29 0.00 5.01
2752 3751 5.506832 CGTGATATAAGAACGTTTTTGGCAC 59.493 40.000 13.87 13.37 32.79 5.01
2753 3752 5.391097 CCGTGATATAAGAACGTTTTTGGCA 60.391 40.000 13.87 4.36 35.59 4.92
2754 3753 5.025826 CCGTGATATAAGAACGTTTTTGGC 58.974 41.667 13.87 0.00 35.59 4.52
2755 3754 5.352016 TCCCGTGATATAAGAACGTTTTTGG 59.648 40.000 13.87 4.87 35.59 3.28
2756 3755 6.128499 TGTCCCGTGATATAAGAACGTTTTTG 60.128 38.462 13.87 0.00 35.59 2.44
2757 3756 5.933463 TGTCCCGTGATATAAGAACGTTTTT 59.067 36.000 9.22 9.22 35.59 1.94
2758 3757 5.481105 TGTCCCGTGATATAAGAACGTTTT 58.519 37.500 0.46 0.00 35.59 2.43
2759 3758 5.075858 TGTCCCGTGATATAAGAACGTTT 57.924 39.130 0.46 0.00 35.59 3.60
2760 3759 4.724074 TGTCCCGTGATATAAGAACGTT 57.276 40.909 0.00 0.00 35.59 3.99
2761 3760 4.724074 TTGTCCCGTGATATAAGAACGT 57.276 40.909 0.00 0.00 35.59 3.99
2762 3761 5.006358 CCTTTTGTCCCGTGATATAAGAACG 59.994 44.000 0.00 0.00 37.07 3.95
2763 3762 5.296035 CCCTTTTGTCCCGTGATATAAGAAC 59.704 44.000 0.00 0.00 0.00 3.01
2764 3763 5.190132 TCCCTTTTGTCCCGTGATATAAGAA 59.810 40.000 0.00 0.00 0.00 2.52
2765 3764 4.717778 TCCCTTTTGTCCCGTGATATAAGA 59.282 41.667 0.00 0.00 0.00 2.10
2766 3765 5.031066 TCCCTTTTGTCCCGTGATATAAG 57.969 43.478 0.00 0.00 0.00 1.73
2767 3766 4.472108 ACTCCCTTTTGTCCCGTGATATAA 59.528 41.667 0.00 0.00 0.00 0.98
2768 3767 4.035112 ACTCCCTTTTGTCCCGTGATATA 58.965 43.478 0.00 0.00 0.00 0.86
2769 3768 2.844348 ACTCCCTTTTGTCCCGTGATAT 59.156 45.455 0.00 0.00 0.00 1.63
2770 3769 2.262637 ACTCCCTTTTGTCCCGTGATA 58.737 47.619 0.00 0.00 0.00 2.15
2771 3770 1.064825 ACTCCCTTTTGTCCCGTGAT 58.935 50.000 0.00 0.00 0.00 3.06
2772 3771 1.719529 TACTCCCTTTTGTCCCGTGA 58.280 50.000 0.00 0.00 0.00 4.35
2773 3772 2.781681 ATACTCCCTTTTGTCCCGTG 57.218 50.000 0.00 0.00 0.00 4.94
2774 3773 4.777463 CATTATACTCCCTTTTGTCCCGT 58.223 43.478 0.00 0.00 0.00 5.28
2775 3774 3.564225 GCATTATACTCCCTTTTGTCCCG 59.436 47.826 0.00 0.00 0.00 5.14
2776 3775 4.793201 AGCATTATACTCCCTTTTGTCCC 58.207 43.478 0.00 0.00 0.00 4.46
2777 3776 7.875327 TTTAGCATTATACTCCCTTTTGTCC 57.125 36.000 0.00 0.00 0.00 4.02
2791 3790 9.736023 GCTTGCTACAGTTAAATTTAGCATTAT 57.264 29.630 20.63 0.26 44.80 1.28
2792 3791 8.188139 GGCTTGCTACAGTTAAATTTAGCATTA 58.812 33.333 20.63 9.19 44.80 1.90
2793 3792 7.035612 GGCTTGCTACAGTTAAATTTAGCATT 58.964 34.615 20.63 3.43 44.80 3.56
2794 3793 6.378280 AGGCTTGCTACAGTTAAATTTAGCAT 59.622 34.615 20.63 6.80 44.80 3.79
2795 3794 5.710099 AGGCTTGCTACAGTTAAATTTAGCA 59.290 36.000 17.25 17.25 44.01 3.49
2796 3795 6.196079 AGGCTTGCTACAGTTAAATTTAGC 57.804 37.500 12.85 12.85 37.95 3.09
2797 3796 7.816640 TCAAGGCTTGCTACAGTTAAATTTAG 58.183 34.615 22.31 0.00 0.00 1.85
2798 3797 7.574967 GCTCAAGGCTTGCTACAGTTAAATTTA 60.575 37.037 22.31 0.00 38.06 1.40
2799 3798 6.648879 TCAAGGCTTGCTACAGTTAAATTT 57.351 33.333 22.31 0.00 0.00 1.82
2800 3799 5.335976 GCTCAAGGCTTGCTACAGTTAAATT 60.336 40.000 22.31 0.00 38.06 1.82
2801 3800 4.156739 GCTCAAGGCTTGCTACAGTTAAAT 59.843 41.667 22.31 0.00 38.06 1.40
2802 3801 3.502211 GCTCAAGGCTTGCTACAGTTAAA 59.498 43.478 22.31 0.10 38.06 1.52
2803 3802 3.074412 GCTCAAGGCTTGCTACAGTTAA 58.926 45.455 22.31 0.85 38.06 2.01
2804 3803 2.038426 TGCTCAAGGCTTGCTACAGTTA 59.962 45.455 22.31 1.59 42.39 2.24
2805 3804 1.202806 TGCTCAAGGCTTGCTACAGTT 60.203 47.619 22.31 0.00 42.39 3.16
2806 3805 0.397941 TGCTCAAGGCTTGCTACAGT 59.602 50.000 22.31 0.00 42.39 3.55
2821 3820 1.131315 GGATCAAAAGCCTTCGTGCTC 59.869 52.381 0.00 0.00 41.80 4.26
2822 3821 1.168714 GGATCAAAAGCCTTCGTGCT 58.831 50.000 0.00 0.00 45.43 4.40
2845 3844 3.055094 AGTTCATTACGTGCTTCCTCCAT 60.055 43.478 0.00 0.00 0.00 3.41
2876 3875 4.322057 AATCCCAATGCTTCCTACTTGT 57.678 40.909 0.00 0.00 0.00 3.16
2884 3883 4.394920 TCTTGACGTTAATCCCAATGCTTC 59.605 41.667 0.00 0.00 0.00 3.86
2889 3888 3.941483 CTGCTCTTGACGTTAATCCCAAT 59.059 43.478 0.00 0.00 0.00 3.16
2893 3892 2.094417 GCACTGCTCTTGACGTTAATCC 59.906 50.000 0.00 0.00 0.00 3.01
2895 3894 3.045601 AGCACTGCTCTTGACGTTAAT 57.954 42.857 0.00 0.00 30.62 1.40
2900 3899 1.657594 CATGTAGCACTGCTCTTGACG 59.342 52.381 6.86 0.00 40.44 4.35
2914 3913 1.361668 GGCCAGTGTCGTGCATGTAG 61.362 60.000 5.68 0.00 0.00 2.74
2915 3914 1.375396 GGCCAGTGTCGTGCATGTA 60.375 57.895 5.68 0.00 0.00 2.29
2916 3915 2.669569 GGCCAGTGTCGTGCATGT 60.670 61.111 5.68 0.00 0.00 3.21
2917 3916 3.792047 CGGCCAGTGTCGTGCATG 61.792 66.667 2.24 0.00 34.12 4.06
2924 3923 3.296709 ATGTCGTCCGGCCAGTGTC 62.297 63.158 2.24 0.00 0.00 3.67
2925 3924 3.311110 ATGTCGTCCGGCCAGTGT 61.311 61.111 2.24 0.00 0.00 3.55
2926 3925 2.815211 CATGTCGTCCGGCCAGTG 60.815 66.667 2.24 0.00 0.00 3.66
2927 3926 4.760047 GCATGTCGTCCGGCCAGT 62.760 66.667 2.24 0.00 0.00 4.00
2929 3928 4.758251 CTGCATGTCGTCCGGCCA 62.758 66.667 2.24 0.00 0.00 5.36
2931 3930 3.188786 GTCTGCATGTCGTCCGGC 61.189 66.667 0.00 0.00 0.00 6.13
2934 3933 2.054363 CATATCGTCTGCATGTCGTCC 58.946 52.381 0.00 0.00 0.00 4.79
2935 3934 2.721603 GTCATATCGTCTGCATGTCGTC 59.278 50.000 0.00 0.00 0.00 4.20
2936 3935 2.099098 TGTCATATCGTCTGCATGTCGT 59.901 45.455 0.00 0.00 0.00 4.34
2937 3936 2.731217 TGTCATATCGTCTGCATGTCG 58.269 47.619 0.00 0.00 0.00 4.35
2938 3937 5.518128 GGATATGTCATATCGTCTGCATGTC 59.482 44.000 21.35 5.18 41.99 3.06
2939 3938 5.414360 GGATATGTCATATCGTCTGCATGT 58.586 41.667 21.35 0.00 41.99 3.21
2940 3939 4.807834 GGGATATGTCATATCGTCTGCATG 59.192 45.833 21.35 0.00 41.99 4.06
2941 3940 4.467438 TGGGATATGTCATATCGTCTGCAT 59.533 41.667 21.35 0.00 41.99 3.96
2942 3941 3.831911 TGGGATATGTCATATCGTCTGCA 59.168 43.478 21.35 5.73 41.99 4.41
2943 3942 4.456280 TGGGATATGTCATATCGTCTGC 57.544 45.455 21.35 10.63 41.99 4.26
2944 3943 6.212888 TGATGGGATATGTCATATCGTCTG 57.787 41.667 21.35 0.00 41.99 3.51
2945 3944 6.608808 TGATGATGGGATATGTCATATCGTCT 59.391 38.462 21.35 11.27 41.99 4.18
2946 3945 6.809869 TGATGATGGGATATGTCATATCGTC 58.190 40.000 21.35 18.72 41.99 4.20
2947 3946 6.796785 TGATGATGGGATATGTCATATCGT 57.203 37.500 21.35 12.79 41.99 3.73
2948 3947 7.767659 ACTTTGATGATGGGATATGTCATATCG 59.232 37.037 21.35 9.42 41.99 2.92
2949 3948 9.107177 GACTTTGATGATGGGATATGTCATATC 57.893 37.037 20.44 20.44 40.68 1.63
2951 3950 7.017452 TGGACTTTGATGATGGGATATGTCATA 59.983 37.037 0.00 0.00 33.03 2.15
2952 3951 6.183361 TGGACTTTGATGATGGGATATGTCAT 60.183 38.462 0.00 0.00 35.42 3.06
2953 3952 5.132480 TGGACTTTGATGATGGGATATGTCA 59.868 40.000 0.00 0.00 0.00 3.58
2955 3954 5.651612 TGGACTTTGATGATGGGATATGT 57.348 39.130 0.00 0.00 0.00 2.29
2956 3955 5.475909 CCTTGGACTTTGATGATGGGATATG 59.524 44.000 0.00 0.00 0.00 1.78
2957 3956 5.638133 CCTTGGACTTTGATGATGGGATAT 58.362 41.667 0.00 0.00 0.00 1.63
2958 3957 4.689705 GCCTTGGACTTTGATGATGGGATA 60.690 45.833 0.00 0.00 0.00 2.59
2959 3958 3.907221 CCTTGGACTTTGATGATGGGAT 58.093 45.455 0.00 0.00 0.00 3.85
2960 3959 2.621407 GCCTTGGACTTTGATGATGGGA 60.621 50.000 0.00 0.00 0.00 4.37
2961 3960 1.753073 GCCTTGGACTTTGATGATGGG 59.247 52.381 0.00 0.00 0.00 4.00
2962 3961 2.449464 TGCCTTGGACTTTGATGATGG 58.551 47.619 0.00 0.00 0.00 3.51
2963 3962 4.524316 TTTGCCTTGGACTTTGATGATG 57.476 40.909 0.00 0.00 0.00 3.07
2964 3963 4.559300 CGTTTTGCCTTGGACTTTGATGAT 60.559 41.667 0.00 0.00 0.00 2.45
2965 3964 3.243367 CGTTTTGCCTTGGACTTTGATGA 60.243 43.478 0.00 0.00 0.00 2.92
2966 3965 3.052036 CGTTTTGCCTTGGACTTTGATG 58.948 45.455 0.00 0.00 0.00 3.07
2967 3966 2.693074 ACGTTTTGCCTTGGACTTTGAT 59.307 40.909 0.00 0.00 0.00 2.57
2968 3967 2.096248 ACGTTTTGCCTTGGACTTTGA 58.904 42.857 0.00 0.00 0.00 2.69
2969 3968 2.099098 AGACGTTTTGCCTTGGACTTTG 59.901 45.455 0.00 0.00 0.00 2.77
2970 3969 2.375146 AGACGTTTTGCCTTGGACTTT 58.625 42.857 0.00 0.00 0.00 2.66
2971 3970 2.052782 AGACGTTTTGCCTTGGACTT 57.947 45.000 0.00 0.00 0.00 3.01
2972 3971 1.947456 GAAGACGTTTTGCCTTGGACT 59.053 47.619 0.00 0.00 0.00 3.85
2973 3972 1.673920 TGAAGACGTTTTGCCTTGGAC 59.326 47.619 0.00 0.00 0.00 4.02
2974 3973 1.946768 CTGAAGACGTTTTGCCTTGGA 59.053 47.619 0.00 0.00 0.00 3.53
2975 3974 1.676006 ACTGAAGACGTTTTGCCTTGG 59.324 47.619 0.00 0.00 0.00 3.61
2976 3975 2.541588 CCACTGAAGACGTTTTGCCTTG 60.542 50.000 0.00 0.00 0.00 3.61
2977 3976 1.676006 CCACTGAAGACGTTTTGCCTT 59.324 47.619 0.00 0.00 0.00 4.35
2978 3977 1.308998 CCACTGAAGACGTTTTGCCT 58.691 50.000 0.00 0.00 0.00 4.75
2979 3978 1.021968 ACCACTGAAGACGTTTTGCC 58.978 50.000 0.00 0.00 0.00 4.52
2980 3979 2.450160 CAACCACTGAAGACGTTTTGC 58.550 47.619 0.00 0.00 0.00 3.68
2981 3980 2.680841 TCCAACCACTGAAGACGTTTTG 59.319 45.455 0.00 0.00 0.00 2.44
2982 3981 2.993937 TCCAACCACTGAAGACGTTTT 58.006 42.857 0.00 0.00 0.00 2.43
2983 3982 2.702592 TCCAACCACTGAAGACGTTT 57.297 45.000 0.00 0.00 0.00 3.60
2984 3983 2.930826 ATCCAACCACTGAAGACGTT 57.069 45.000 0.00 0.00 0.00 3.99
2985 3984 2.930826 AATCCAACCACTGAAGACGT 57.069 45.000 0.00 0.00 0.00 4.34
2986 3985 2.673368 GCTAATCCAACCACTGAAGACG 59.327 50.000 0.00 0.00 0.00 4.18
2987 3986 3.944087 AGCTAATCCAACCACTGAAGAC 58.056 45.455 0.00 0.00 0.00 3.01
2988 3987 5.425217 TGATAGCTAATCCAACCACTGAAGA 59.575 40.000 0.00 0.00 33.22 2.87
2989 3988 5.674525 TGATAGCTAATCCAACCACTGAAG 58.325 41.667 0.00 0.00 33.22 3.02
2990 3989 5.692115 TGATAGCTAATCCAACCACTGAA 57.308 39.130 0.00 0.00 33.22 3.02
2991 3990 5.221722 GGATGATAGCTAATCCAACCACTGA 60.222 44.000 16.53 0.00 41.78 3.41
2992 3991 4.999950 GGATGATAGCTAATCCAACCACTG 59.000 45.833 16.53 0.00 41.78 3.66
2993 3992 4.910304 AGGATGATAGCTAATCCAACCACT 59.090 41.667 21.42 2.61 44.17 4.00
2994 3993 5.221722 TGAGGATGATAGCTAATCCAACCAC 60.222 44.000 21.42 14.82 44.17 4.16
2995 3994 4.907269 TGAGGATGATAGCTAATCCAACCA 59.093 41.667 21.42 14.58 44.17 3.67
2996 3995 5.489792 TGAGGATGATAGCTAATCCAACC 57.510 43.478 21.42 15.76 44.17 3.77
2997 3996 6.471146 ACATGAGGATGATAGCTAATCCAAC 58.529 40.000 21.42 16.00 44.17 3.77
2998 3997 6.573094 CGACATGAGGATGATAGCTAATCCAA 60.573 42.308 21.42 12.43 44.17 3.53
2999 3998 5.105595 CGACATGAGGATGATAGCTAATCCA 60.106 44.000 21.42 10.65 44.17 3.41
3000 3999 5.105554 ACGACATGAGGATGATAGCTAATCC 60.106 44.000 14.39 14.39 42.39 3.01
3001 4000 5.960113 ACGACATGAGGATGATAGCTAATC 58.040 41.667 0.00 0.00 33.36 1.75
3002 4001 5.991933 ACGACATGAGGATGATAGCTAAT 57.008 39.130 0.00 0.00 33.36 1.73
3003 4002 5.301805 TGAACGACATGAGGATGATAGCTAA 59.698 40.000 0.00 0.00 33.36 3.09
3004 4003 4.827284 TGAACGACATGAGGATGATAGCTA 59.173 41.667 0.00 0.00 33.36 3.32
3005 4004 3.638627 TGAACGACATGAGGATGATAGCT 59.361 43.478 0.00 0.00 33.36 3.32
3006 4005 3.982475 TGAACGACATGAGGATGATAGC 58.018 45.455 0.00 0.00 33.36 2.97
3007 4006 5.407691 CCAATGAACGACATGAGGATGATAG 59.592 44.000 0.00 0.00 39.39 2.08
3008 4007 5.070313 TCCAATGAACGACATGAGGATGATA 59.930 40.000 0.00 0.00 38.33 2.15
3009 4008 4.132336 CCAATGAACGACATGAGGATGAT 58.868 43.478 0.00 0.00 39.39 2.45
3010 4009 3.197549 TCCAATGAACGACATGAGGATGA 59.802 43.478 0.00 0.00 38.33 2.92
3011 4010 3.534554 TCCAATGAACGACATGAGGATG 58.465 45.455 0.00 0.00 38.33 3.51
3012 4011 3.912496 TCCAATGAACGACATGAGGAT 57.088 42.857 0.00 0.00 38.33 3.24
3013 4012 3.334691 GTTCCAATGAACGACATGAGGA 58.665 45.455 0.00 13.11 41.35 3.71
3014 4013 3.747099 GTTCCAATGAACGACATGAGG 57.253 47.619 0.00 1.44 41.35 3.86
3024 4023 0.950836 CACACGGCAGTTCCAATGAA 59.049 50.000 0.00 0.00 34.01 2.57
3025 4024 0.179032 ACACACGGCAGTTCCAATGA 60.179 50.000 0.00 0.00 34.01 2.57
3026 4025 0.040157 CACACACGGCAGTTCCAATG 60.040 55.000 0.00 0.00 34.01 2.82
3027 4026 0.465460 ACACACACGGCAGTTCCAAT 60.465 50.000 0.00 0.00 34.01 3.16
3028 4027 0.178301 TACACACACGGCAGTTCCAA 59.822 50.000 0.00 0.00 34.01 3.53
3029 4028 0.249699 CTACACACACGGCAGTTCCA 60.250 55.000 0.00 0.00 34.01 3.53
3030 4029 0.249741 ACTACACACACGGCAGTTCC 60.250 55.000 0.00 0.00 0.00 3.62
3031 4030 2.288030 ACTACTACACACACGGCAGTTC 60.288 50.000 0.00 0.00 0.00 3.01
3032 4031 1.684983 ACTACTACACACACGGCAGTT 59.315 47.619 0.00 0.00 0.00 3.16
3033 4032 1.325355 ACTACTACACACACGGCAGT 58.675 50.000 0.00 0.00 0.00 4.40
3034 4033 2.433868 AACTACTACACACACGGCAG 57.566 50.000 0.00 0.00 0.00 4.85
3035 4034 2.746269 GAAACTACTACACACACGGCA 58.254 47.619 0.00 0.00 0.00 5.69
3036 4035 1.717645 CGAAACTACTACACACACGGC 59.282 52.381 0.00 0.00 0.00 5.68
3037 4036 3.004024 ACGAAACTACTACACACACGG 57.996 47.619 0.00 0.00 0.00 4.94
3038 4037 4.969395 TGTTACGAAACTACTACACACACG 59.031 41.667 0.00 0.00 36.51 4.49
3039 4038 6.638063 TGATGTTACGAAACTACTACACACAC 59.362 38.462 0.00 0.00 36.51 3.82
3040 4039 6.737118 TGATGTTACGAAACTACTACACACA 58.263 36.000 0.00 0.00 36.51 3.72
3041 4040 7.627585 TTGATGTTACGAAACTACTACACAC 57.372 36.000 0.00 0.00 36.51 3.82
3042 4041 8.083462 TCATTGATGTTACGAAACTACTACACA 58.917 33.333 0.00 0.00 36.51 3.72
3043 4042 8.456904 TCATTGATGTTACGAAACTACTACAC 57.543 34.615 0.00 0.00 36.51 2.90
3044 4043 9.083080 CATCATTGATGTTACGAAACTACTACA 57.917 33.333 16.93 0.00 35.54 2.74
3045 4044 9.297586 TCATCATTGATGTTACGAAACTACTAC 57.702 33.333 22.64 0.00 40.55 2.73
3046 4045 9.297586 GTCATCATTGATGTTACGAAACTACTA 57.702 33.333 22.64 0.00 40.55 1.82
3047 4046 7.817478 TGTCATCATTGATGTTACGAAACTACT 59.183 33.333 22.64 0.00 40.55 2.57
3048 4047 7.959733 TGTCATCATTGATGTTACGAAACTAC 58.040 34.615 22.64 11.93 40.55 2.73
3049 4048 8.603181 CATGTCATCATTGATGTTACGAAACTA 58.397 33.333 22.64 6.72 40.55 2.24
3050 4049 7.414429 CCATGTCATCATTGATGTTACGAAACT 60.414 37.037 22.64 3.66 40.55 2.66
3051 4050 6.688385 CCATGTCATCATTGATGTTACGAAAC 59.312 38.462 22.64 13.70 40.55 2.78
3052 4051 6.677675 GCCATGTCATCATTGATGTTACGAAA 60.678 38.462 22.64 2.65 40.55 3.46
3053 4052 5.220835 GCCATGTCATCATTGATGTTACGAA 60.221 40.000 22.64 3.38 40.55 3.85
3054 4053 4.273235 GCCATGTCATCATTGATGTTACGA 59.727 41.667 22.64 4.05 40.55 3.43
3055 4054 4.530388 GCCATGTCATCATTGATGTTACG 58.470 43.478 22.64 12.14 40.55 3.18
3056 4055 4.261741 GGGCCATGTCATCATTGATGTTAC 60.262 45.833 22.64 16.09 40.55 2.50
3057 4056 3.890756 GGGCCATGTCATCATTGATGTTA 59.109 43.478 22.64 14.64 40.55 2.41
3058 4057 2.696707 GGGCCATGTCATCATTGATGTT 59.303 45.455 22.64 9.32 40.55 2.71
3059 4058 2.313317 GGGCCATGTCATCATTGATGT 58.687 47.619 22.64 4.72 40.55 3.06
3060 4059 2.296190 CTGGGCCATGTCATCATTGATG 59.704 50.000 18.71 18.71 41.00 3.07
3061 4060 2.176148 TCTGGGCCATGTCATCATTGAT 59.824 45.455 6.72 0.00 33.56 2.57
3062 4061 1.565288 TCTGGGCCATGTCATCATTGA 59.435 47.619 6.72 0.00 31.15 2.57
3063 4062 2.061509 TCTGGGCCATGTCATCATTG 57.938 50.000 6.72 0.00 31.15 2.82
3064 4063 2.381911 GTTCTGGGCCATGTCATCATT 58.618 47.619 6.72 0.00 31.15 2.57
3065 4064 1.410648 GGTTCTGGGCCATGTCATCAT 60.411 52.381 6.72 0.00 34.21 2.45
3066 4065 0.034186 GGTTCTGGGCCATGTCATCA 60.034 55.000 6.72 0.00 0.00 3.07
3067 4066 0.257039 AGGTTCTGGGCCATGTCATC 59.743 55.000 6.72 0.00 0.00 2.92
3068 4067 0.706433 AAGGTTCTGGGCCATGTCAT 59.294 50.000 6.72 0.00 0.00 3.06
3069 4068 0.482446 AAAGGTTCTGGGCCATGTCA 59.518 50.000 6.72 0.00 0.00 3.58
3070 4069 2.507407 TAAAGGTTCTGGGCCATGTC 57.493 50.000 6.72 0.00 0.00 3.06
3071 4070 2.358195 GGATAAAGGTTCTGGGCCATGT 60.358 50.000 6.72 0.00 0.00 3.21
3072 4071 2.310538 GGATAAAGGTTCTGGGCCATG 58.689 52.381 6.72 0.97 0.00 3.66
3073 4072 1.217942 GGGATAAAGGTTCTGGGCCAT 59.782 52.381 6.72 0.00 0.00 4.40
3074 4073 0.629058 GGGATAAAGGTTCTGGGCCA 59.371 55.000 5.85 5.85 0.00 5.36
3075 4074 0.465642 CGGGATAAAGGTTCTGGGCC 60.466 60.000 0.00 0.00 0.00 5.80
3076 4075 1.101635 GCGGGATAAAGGTTCTGGGC 61.102 60.000 0.00 0.00 0.00 5.36
3077 4076 0.814010 CGCGGGATAAAGGTTCTGGG 60.814 60.000 0.00 0.00 0.00 4.45
3078 4077 1.436983 GCGCGGGATAAAGGTTCTGG 61.437 60.000 8.83 0.00 0.00 3.86
3079 4078 0.462047 AGCGCGGGATAAAGGTTCTG 60.462 55.000 8.83 0.00 0.00 3.02
3080 4079 0.179081 GAGCGCGGGATAAAGGTTCT 60.179 55.000 8.83 0.00 0.00 3.01
3081 4080 0.179081 AGAGCGCGGGATAAAGGTTC 60.179 55.000 8.83 0.00 0.00 3.62
3082 4081 0.179081 GAGAGCGCGGGATAAAGGTT 60.179 55.000 8.83 0.00 0.00 3.50
3083 4082 1.043673 AGAGAGCGCGGGATAAAGGT 61.044 55.000 8.83 0.00 0.00 3.50
3114 4113 8.517878 ACCAATAAGTATTGCAAGCATATCATC 58.482 33.333 4.94 0.00 41.23 2.92
3116 4115 7.822161 ACCAATAAGTATTGCAAGCATATCA 57.178 32.000 4.94 0.00 41.23 2.15
3125 4124 4.100344 TCGGCTCTACCAATAAGTATTGCA 59.900 41.667 5.66 0.00 41.23 4.08
3134 4133 3.308035 TTCTCCTCGGCTCTACCAATA 57.692 47.619 0.00 0.00 39.03 1.90
3139 4138 0.032815 GCCATTCTCCTCGGCTCTAC 59.967 60.000 0.00 0.00 42.78 2.59
3147 4146 0.034616 CCGATCTGGCCATTCTCCTC 59.965 60.000 5.51 0.00 0.00 3.71
3181 4180 3.181471 CGAAACTCAGCCATCCACTAGAT 60.181 47.826 0.00 0.00 34.66 1.98
3189 4188 2.611225 AGGATCGAAACTCAGCCATC 57.389 50.000 0.00 0.00 0.00 3.51
3194 4193 6.422100 CCACATATTGTAGGATCGAAACTCAG 59.578 42.308 0.00 0.00 0.00 3.35
3233 5326 7.330454 CGCATGCACTAGATGTAGATTTAGATT 59.670 37.037 19.57 0.00 0.00 2.40
3236 5329 5.923114 ACGCATGCACTAGATGTAGATTTAG 59.077 40.000 19.57 0.00 0.00 1.85
3238 5331 4.697514 ACGCATGCACTAGATGTAGATTT 58.302 39.130 19.57 0.00 0.00 2.17
3242 5335 4.489679 TCTACGCATGCACTAGATGTAG 57.510 45.455 19.57 17.47 0.00 2.74
3245 5338 2.991866 CCATCTACGCATGCACTAGATG 59.008 50.000 32.58 32.58 41.66 2.90
3246 5339 2.611473 GCCATCTACGCATGCACTAGAT 60.611 50.000 21.43 21.43 0.00 1.98
3248 5341 1.143305 GCCATCTACGCATGCACTAG 58.857 55.000 19.57 14.90 0.00 2.57
3249 5342 0.463620 TGCCATCTACGCATGCACTA 59.536 50.000 19.57 5.20 0.00 2.74
3250 5343 0.179037 ATGCCATCTACGCATGCACT 60.179 50.000 19.57 4.13 45.11 4.40
3251 5344 2.324215 ATGCCATCTACGCATGCAC 58.676 52.632 19.57 0.00 45.11 4.57
3252 5345 4.883240 ATGCCATCTACGCATGCA 57.117 50.000 19.57 0.00 45.11 3.96
3256 5382 1.524393 CTGCCATGCCATCTACGCA 60.524 57.895 0.00 0.00 41.28 5.24
3258 5384 2.238942 TTACTGCCATGCCATCTACG 57.761 50.000 0.00 0.00 0.00 3.51
3261 5387 4.796606 AGTTATTTACTGCCATGCCATCT 58.203 39.130 0.00 0.00 35.19 2.90
3292 5418 6.251471 AGGTGATGAATTGTTTCCTCTTGAT 58.749 36.000 0.00 0.00 30.40 2.57
3347 5476 1.710013 ACACATGCACAGTACGCTAC 58.290 50.000 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.