Multiple sequence alignment - TraesCS5B01G001100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G001100 | chr5B | 100.000 | 4243 | 0 | 0 | 2461 | 6703 | 864135 | 859893 | 0.000000e+00 | 7836.0 |
1 | TraesCS5B01G001100 | chr5B | 100.000 | 2151 | 0 | 0 | 1 | 2151 | 866595 | 864445 | 0.000000e+00 | 3973.0 |
2 | TraesCS5B01G001100 | chr5B | 83.903 | 1609 | 248 | 9 | 3893 | 5494 | 44140287 | 44141891 | 0.000000e+00 | 1526.0 |
3 | TraesCS5B01G001100 | chr5B | 95.708 | 932 | 23 | 7 | 5775 | 6703 | 400664014 | 400664931 | 0.000000e+00 | 1483.0 |
4 | TraesCS5B01G001100 | chr5B | 98.758 | 322 | 4 | 0 | 1830 | 2151 | 411933655 | 411933334 | 2.100000e-159 | 573.0 |
5 | TraesCS5B01G001100 | chr5B | 93.889 | 360 | 15 | 6 | 6345 | 6701 | 407242802 | 407242447 | 2.750000e-148 | 536.0 |
6 | TraesCS5B01G001100 | chr5B | 98.286 | 175 | 3 | 0 | 2461 | 2635 | 137415231 | 137415057 | 2.350000e-79 | 307.0 |
7 | TraesCS5B01G001100 | chr5B | 94.845 | 97 | 2 | 3 | 3688 | 3782 | 13350146 | 13350051 | 1.510000e-31 | 148.0 |
8 | TraesCS5B01G001100 | chr5B | 93.814 | 97 | 2 | 3 | 3684 | 3780 | 13364611 | 13364703 | 7.010000e-30 | 143.0 |
9 | TraesCS5B01G001100 | chr5B | 92.157 | 102 | 6 | 2 | 3691 | 3792 | 687331438 | 687331339 | 7.010000e-30 | 143.0 |
10 | TraesCS5B01G001100 | chr5B | 100.000 | 56 | 0 | 0 | 3563 | 3618 | 862982 | 862927 | 3.310000e-18 | 104.0 |
11 | TraesCS5B01G001100 | chr5B | 100.000 | 56 | 0 | 0 | 3614 | 3669 | 863033 | 862978 | 3.310000e-18 | 104.0 |
12 | TraesCS5B01G001100 | chr5D | 92.653 | 2137 | 133 | 14 | 3640 | 5766 | 6822804 | 6820682 | 0.000000e+00 | 3055.0 |
13 | TraesCS5B01G001100 | chr5D | 84.217 | 1603 | 246 | 5 | 3896 | 5493 | 44571487 | 44569887 | 0.000000e+00 | 1552.0 |
14 | TraesCS5B01G001100 | chr5D | 84.484 | 1057 | 63 | 36 | 696 | 1670 | 6824192 | 6823155 | 0.000000e+00 | 950.0 |
15 | TraesCS5B01G001100 | chr5D | 87.053 | 587 | 35 | 20 | 5775 | 6346 | 72364071 | 72364631 | 5.710000e-175 | 625.0 |
16 | TraesCS5B01G001100 | chr5D | 92.222 | 360 | 21 | 6 | 6345 | 6701 | 536867438 | 536867083 | 2.790000e-138 | 503.0 |
17 | TraesCS5B01G001100 | chr5D | 80.414 | 531 | 77 | 17 | 3683 | 4190 | 3810217 | 3809691 | 4.910000e-101 | 379.0 |
18 | TraesCS5B01G001100 | chr5D | 86.879 | 282 | 14 | 11 | 3043 | 3319 | 6823114 | 6822851 | 1.830000e-75 | 294.0 |
19 | TraesCS5B01G001100 | chr5D | 96.667 | 90 | 2 | 1 | 3699 | 3788 | 544801961 | 544801873 | 1.510000e-31 | 148.0 |
20 | TraesCS5B01G001100 | chr5D | 92.157 | 102 | 6 | 2 | 3682 | 3782 | 13909890 | 13909790 | 7.010000e-30 | 143.0 |
21 | TraesCS5B01G001100 | chr5D | 92.941 | 85 | 6 | 0 | 4 | 88 | 6824767 | 6824683 | 2.540000e-24 | 124.0 |
22 | TraesCS5B01G001100 | chr5A | 94.794 | 1921 | 90 | 5 | 3842 | 5760 | 3086832 | 3088744 | 0.000000e+00 | 2985.0 |
23 | TraesCS5B01G001100 | chr5A | 83.770 | 1602 | 255 | 3 | 3896 | 5493 | 34982768 | 34981168 | 0.000000e+00 | 1513.0 |
24 | TraesCS5B01G001100 | chr5A | 85.600 | 1250 | 172 | 7 | 3880 | 5124 | 3132588 | 3133834 | 0.000000e+00 | 1304.0 |
25 | TraesCS5B01G001100 | chr5A | 81.036 | 1313 | 91 | 71 | 471 | 1670 | 3085028 | 3086295 | 0.000000e+00 | 900.0 |
26 | TraesCS5B01G001100 | chr5A | 95.495 | 111 | 4 | 1 | 3689 | 3798 | 3086722 | 3086832 | 6.910000e-40 | 176.0 |
27 | TraesCS5B01G001100 | chr5A | 96.078 | 51 | 2 | 0 | 1213 | 1263 | 34986385 | 34986335 | 4.310000e-12 | 84.2 |
28 | TraesCS5B01G001100 | chr5A | 90.476 | 63 | 5 | 1 | 3026 | 3087 | 3086561 | 3086623 | 1.550000e-11 | 82.4 |
29 | TraesCS5B01G001100 | chr6A | 96.026 | 931 | 20 | 7 | 5775 | 6703 | 107169508 | 107170423 | 0.000000e+00 | 1498.0 |
30 | TraesCS5B01G001100 | chr7A | 95.334 | 943 | 26 | 8 | 5764 | 6703 | 482328886 | 482329813 | 0.000000e+00 | 1482.0 |
31 | TraesCS5B01G001100 | chr7A | 85.566 | 1157 | 160 | 6 | 4345 | 5498 | 47511682 | 47512834 | 0.000000e+00 | 1205.0 |
32 | TraesCS5B01G001100 | chr7A | 88.756 | 587 | 43 | 13 | 5775 | 6346 | 219167424 | 219168002 | 0.000000e+00 | 697.0 |
33 | TraesCS5B01G001100 | chr7A | 98.039 | 51 | 1 | 0 | 1213 | 1263 | 47511529 | 47511579 | 9.260000e-14 | 89.8 |
34 | TraesCS5B01G001100 | chr2D | 82.884 | 1595 | 260 | 10 | 3911 | 5503 | 15991423 | 15989840 | 0.000000e+00 | 1421.0 |
35 | TraesCS5B01G001100 | chr2D | 82.127 | 1589 | 273 | 9 | 3911 | 5498 | 15935339 | 15933761 | 0.000000e+00 | 1351.0 |
36 | TraesCS5B01G001100 | chr2D | 85.802 | 324 | 29 | 12 | 5770 | 6087 | 56312282 | 56312594 | 1.800000e-85 | 327.0 |
37 | TraesCS5B01G001100 | chr4A | 82.078 | 1607 | 256 | 18 | 3901 | 5492 | 657071326 | 657072915 | 0.000000e+00 | 1343.0 |
38 | TraesCS5B01G001100 | chr4B | 94.347 | 513 | 7 | 3 | 2463 | 2975 | 672314765 | 672314275 | 0.000000e+00 | 767.0 |
39 | TraesCS5B01G001100 | chr4B | 97.455 | 393 | 10 | 0 | 2634 | 3026 | 28265887 | 28265495 | 0.000000e+00 | 671.0 |
40 | TraesCS5B01G001100 | chr4B | 97.853 | 326 | 7 | 0 | 1826 | 2151 | 479219509 | 479219184 | 1.260000e-156 | 564.0 |
41 | TraesCS5B01G001100 | chr4B | 97.826 | 322 | 7 | 0 | 1830 | 2151 | 28266972 | 28266651 | 2.110000e-154 | 556.0 |
42 | TraesCS5B01G001100 | chr4B | 98.286 | 175 | 3 | 0 | 2461 | 2635 | 479219139 | 479218965 | 2.350000e-79 | 307.0 |
43 | TraesCS5B01G001100 | chr4B | 85.874 | 269 | 22 | 10 | 5767 | 6027 | 66189475 | 66189215 | 8.570000e-69 | 272.0 |
44 | TraesCS5B01G001100 | chr4B | 94.898 | 98 | 2 | 2 | 3681 | 3778 | 14343227 | 14343321 | 4.190000e-32 | 150.0 |
45 | TraesCS5B01G001100 | chr2B | 98.219 | 393 | 7 | 0 | 2634 | 3026 | 752930639 | 752930247 | 0.000000e+00 | 688.0 |
46 | TraesCS5B01G001100 | chr2B | 97.710 | 393 | 9 | 0 | 2634 | 3026 | 617149735 | 617150127 | 0.000000e+00 | 676.0 |
47 | TraesCS5B01G001100 | chr2B | 89.041 | 438 | 29 | 8 | 5781 | 6206 | 547098842 | 547098412 | 5.950000e-145 | 525.0 |
48 | TraesCS5B01G001100 | chr2B | 97.714 | 175 | 4 | 0 | 2461 | 2635 | 617147648 | 617147822 | 1.090000e-77 | 302.0 |
49 | TraesCS5B01G001100 | chr1B | 97.975 | 395 | 8 | 0 | 2634 | 3028 | 61991509 | 61991903 | 0.000000e+00 | 686.0 |
50 | TraesCS5B01G001100 | chr1B | 98.148 | 324 | 6 | 0 | 1828 | 2151 | 61990714 | 61991037 | 3.510000e-157 | 566.0 |
51 | TraesCS5B01G001100 | chr1B | 97.714 | 175 | 4 | 0 | 2461 | 2635 | 61991093 | 61991267 | 1.090000e-77 | 302.0 |
52 | TraesCS5B01G001100 | chr6B | 97.022 | 403 | 11 | 1 | 2634 | 3035 | 704691248 | 704691650 | 0.000000e+00 | 676.0 |
53 | TraesCS5B01G001100 | chr6B | 98.137 | 322 | 4 | 1 | 1830 | 2151 | 451676786 | 451676467 | 1.630000e-155 | 560.0 |
54 | TraesCS5B01G001100 | chr6B | 96.657 | 329 | 10 | 1 | 1824 | 2151 | 693802863 | 693803191 | 4.570000e-151 | 545.0 |
55 | TraesCS5B01G001100 | chr6B | 91.922 | 359 | 23 | 5 | 6345 | 6701 | 708393038 | 708392684 | 1.300000e-136 | 497.0 |
56 | TraesCS5B01G001100 | chr6B | 97.714 | 175 | 4 | 0 | 2461 | 2635 | 670897839 | 670897665 | 1.090000e-77 | 302.0 |
57 | TraesCS5B01G001100 | chr6B | 97.714 | 175 | 4 | 0 | 2461 | 2635 | 704689161 | 704689335 | 1.090000e-77 | 302.0 |
58 | TraesCS5B01G001100 | chr3B | 97.710 | 393 | 9 | 0 | 2634 | 3026 | 671136584 | 671136192 | 0.000000e+00 | 676.0 |
59 | TraesCS5B01G001100 | chr3B | 96.970 | 396 | 12 | 0 | 2634 | 3029 | 726355859 | 726356254 | 0.000000e+00 | 665.0 |
60 | TraesCS5B01G001100 | chr3B | 97.840 | 324 | 7 | 0 | 1828 | 2151 | 49153443 | 49153766 | 1.630000e-155 | 560.0 |
61 | TraesCS5B01G001100 | chr3B | 97.714 | 175 | 4 | 0 | 2461 | 2635 | 516428580 | 516428754 | 1.090000e-77 | 302.0 |
62 | TraesCS5B01G001100 | chr7B | 97.250 | 400 | 8 | 2 | 2630 | 3028 | 698922857 | 698922460 | 0.000000e+00 | 675.0 |
63 | TraesCS5B01G001100 | chr7B | 97.215 | 395 | 9 | 1 | 2634 | 3028 | 693386471 | 693386079 | 0.000000e+00 | 667.0 |
64 | TraesCS5B01G001100 | chr7B | 97.516 | 322 | 8 | 0 | 1828 | 2149 | 693387279 | 693386958 | 9.820000e-153 | 551.0 |
65 | TraesCS5B01G001100 | chr7B | 97.508 | 321 | 8 | 0 | 1831 | 2151 | 6895944 | 6895624 | 3.530000e-152 | 549.0 |
66 | TraesCS5B01G001100 | chr7B | 97.714 | 175 | 4 | 0 | 2461 | 2635 | 246382919 | 246383093 | 1.090000e-77 | 302.0 |
67 | TraesCS5B01G001100 | chrUn | 87.415 | 588 | 49 | 12 | 5775 | 6349 | 49961906 | 49961331 | 0.000000e+00 | 652.0 |
68 | TraesCS5B01G001100 | chr7D | 85.110 | 591 | 41 | 20 | 5775 | 6349 | 4171625 | 4171066 | 1.630000e-155 | 560.0 |
69 | TraesCS5B01G001100 | chr7D | 92.244 | 361 | 19 | 8 | 6345 | 6701 | 586687459 | 586687814 | 2.790000e-138 | 503.0 |
70 | TraesCS5B01G001100 | chr7D | 89.091 | 385 | 25 | 6 | 5777 | 6150 | 552324313 | 552323935 | 4.740000e-126 | 462.0 |
71 | TraesCS5B01G001100 | chr7D | 91.513 | 271 | 17 | 5 | 6082 | 6349 | 431154176 | 431153909 | 1.060000e-97 | 368.0 |
72 | TraesCS5B01G001100 | chr7D | 87.307 | 323 | 26 | 10 | 5770 | 6087 | 33694291 | 33694603 | 8.270000e-94 | 355.0 |
73 | TraesCS5B01G001100 | chr7D | 88.119 | 303 | 26 | 5 | 5771 | 6069 | 431164695 | 431164399 | 1.070000e-92 | 351.0 |
74 | TraesCS5B01G001100 | chr7D | 91.633 | 251 | 15 | 5 | 6098 | 6346 | 586687159 | 586687405 | 6.440000e-90 | 342.0 |
75 | TraesCS5B01G001100 | chr3A | 92.244 | 361 | 19 | 8 | 6345 | 6701 | 357059041 | 357059396 | 2.790000e-138 | 503.0 |
76 | TraesCS5B01G001100 | chr2A | 91.413 | 361 | 23 | 7 | 6345 | 6701 | 733098018 | 733098374 | 7.810000e-134 | 488.0 |
77 | TraesCS5B01G001100 | chr4D | 87.133 | 443 | 23 | 12 | 5775 | 6206 | 400894868 | 400894449 | 7.870000e-129 | 472.0 |
78 | TraesCS5B01G001100 | chr4D | 87.133 | 443 | 22 | 16 | 5775 | 6206 | 472925584 | 472925166 | 2.830000e-128 | 470.0 |
79 | TraesCS5B01G001100 | chr4D | 80.526 | 190 | 37 | 0 | 3906 | 4095 | 11867190 | 11867001 | 5.420000e-31 | 147.0 |
80 | TraesCS5B01G001100 | chr4D | 96.512 | 86 | 3 | 0 | 3687 | 3772 | 7904979 | 7905064 | 7.010000e-30 | 143.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G001100 | chr5B | 859893 | 866595 | 6702 | True | 3004.25 | 7836 | 100.000000 | 1 | 6703 | 4 | chr5B.!!$R6 | 6702 |
1 | TraesCS5B01G001100 | chr5B | 44140287 | 44141891 | 1604 | False | 1526.00 | 1526 | 83.903000 | 3893 | 5494 | 1 | chr5B.!!$F2 | 1601 |
2 | TraesCS5B01G001100 | chr5B | 400664014 | 400664931 | 917 | False | 1483.00 | 1483 | 95.708000 | 5775 | 6703 | 1 | chr5B.!!$F3 | 928 |
3 | TraesCS5B01G001100 | chr5D | 44569887 | 44571487 | 1600 | True | 1552.00 | 1552 | 84.217000 | 3896 | 5493 | 1 | chr5D.!!$R3 | 1597 |
4 | TraesCS5B01G001100 | chr5D | 6820682 | 6824767 | 4085 | True | 1105.75 | 3055 | 89.239250 | 4 | 5766 | 4 | chr5D.!!$R6 | 5762 |
5 | TraesCS5B01G001100 | chr5D | 72364071 | 72364631 | 560 | False | 625.00 | 625 | 87.053000 | 5775 | 6346 | 1 | chr5D.!!$F1 | 571 |
6 | TraesCS5B01G001100 | chr5D | 3809691 | 3810217 | 526 | True | 379.00 | 379 | 80.414000 | 3683 | 4190 | 1 | chr5D.!!$R1 | 507 |
7 | TraesCS5B01G001100 | chr5A | 3132588 | 3133834 | 1246 | False | 1304.00 | 1304 | 85.600000 | 3880 | 5124 | 1 | chr5A.!!$F1 | 1244 |
8 | TraesCS5B01G001100 | chr5A | 3085028 | 3088744 | 3716 | False | 1035.85 | 2985 | 90.450250 | 471 | 5760 | 4 | chr5A.!!$F2 | 5289 |
9 | TraesCS5B01G001100 | chr5A | 34981168 | 34986385 | 5217 | True | 798.60 | 1513 | 89.924000 | 1213 | 5493 | 2 | chr5A.!!$R1 | 4280 |
10 | TraesCS5B01G001100 | chr6A | 107169508 | 107170423 | 915 | False | 1498.00 | 1498 | 96.026000 | 5775 | 6703 | 1 | chr6A.!!$F1 | 928 |
11 | TraesCS5B01G001100 | chr7A | 482328886 | 482329813 | 927 | False | 1482.00 | 1482 | 95.334000 | 5764 | 6703 | 1 | chr7A.!!$F2 | 939 |
12 | TraesCS5B01G001100 | chr7A | 219167424 | 219168002 | 578 | False | 697.00 | 697 | 88.756000 | 5775 | 6346 | 1 | chr7A.!!$F1 | 571 |
13 | TraesCS5B01G001100 | chr7A | 47511529 | 47512834 | 1305 | False | 647.40 | 1205 | 91.802500 | 1213 | 5498 | 2 | chr7A.!!$F3 | 4285 |
14 | TraesCS5B01G001100 | chr2D | 15989840 | 15991423 | 1583 | True | 1421.00 | 1421 | 82.884000 | 3911 | 5503 | 1 | chr2D.!!$R2 | 1592 |
15 | TraesCS5B01G001100 | chr2D | 15933761 | 15935339 | 1578 | True | 1351.00 | 1351 | 82.127000 | 3911 | 5498 | 1 | chr2D.!!$R1 | 1587 |
16 | TraesCS5B01G001100 | chr4A | 657071326 | 657072915 | 1589 | False | 1343.00 | 1343 | 82.078000 | 3901 | 5492 | 1 | chr4A.!!$F1 | 1591 |
17 | TraesCS5B01G001100 | chr4B | 28265495 | 28266972 | 1477 | True | 613.50 | 671 | 97.640500 | 1830 | 3026 | 2 | chr4B.!!$R3 | 1196 |
18 | TraesCS5B01G001100 | chr4B | 479218965 | 479219509 | 544 | True | 435.50 | 564 | 98.069500 | 1826 | 2635 | 2 | chr4B.!!$R4 | 809 |
19 | TraesCS5B01G001100 | chr2B | 617147648 | 617150127 | 2479 | False | 489.00 | 676 | 97.712000 | 2461 | 3026 | 2 | chr2B.!!$F1 | 565 |
20 | TraesCS5B01G001100 | chr1B | 61990714 | 61991903 | 1189 | False | 518.00 | 686 | 97.945667 | 1828 | 3028 | 3 | chr1B.!!$F1 | 1200 |
21 | TraesCS5B01G001100 | chr6B | 704689161 | 704691650 | 2489 | False | 489.00 | 676 | 97.368000 | 2461 | 3035 | 2 | chr6B.!!$F2 | 574 |
22 | TraesCS5B01G001100 | chr7B | 693386079 | 693387279 | 1200 | True | 609.00 | 667 | 97.365500 | 1828 | 3028 | 2 | chr7B.!!$R3 | 1200 |
23 | TraesCS5B01G001100 | chrUn | 49961331 | 49961906 | 575 | True | 652.00 | 652 | 87.415000 | 5775 | 6349 | 1 | chrUn.!!$R1 | 574 |
24 | TraesCS5B01G001100 | chr7D | 4171066 | 4171625 | 559 | True | 560.00 | 560 | 85.110000 | 5775 | 6349 | 1 | chr7D.!!$R1 | 574 |
25 | TraesCS5B01G001100 | chr7D | 586687159 | 586687814 | 655 | False | 422.50 | 503 | 91.938500 | 6098 | 6701 | 2 | chr7D.!!$F2 | 603 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
227 | 323 | 0.039798 | GCAATATGGTGCATCCGCTG | 60.040 | 55.000 | 0.00 | 0.0 | 44.29 | 5.18 | F |
1039 | 1228 | 0.039437 | CTACCTACCTATGTGCGCCG | 60.039 | 60.000 | 4.18 | 0.0 | 0.00 | 6.46 | F |
1294 | 1533 | 0.179207 | GCATGCACATGTCACACTCG | 60.179 | 55.000 | 14.21 | 0.0 | 40.80 | 4.18 | F |
1628 | 1890 | 0.409092 | TGAGTGCCCACAATCCCATT | 59.591 | 50.000 | 0.82 | 0.0 | 40.16 | 3.16 | F |
1799 | 2226 | 0.443869 | GAGCGAAATCATGTGCGTGT | 59.556 | 50.000 | 0.00 | 0.0 | 0.00 | 4.49 | F |
3426 | 5833 | 0.856982 | TTTCCTCTTCCTTTGGGGCA | 59.143 | 50.000 | 0.00 | 0.0 | 34.39 | 5.36 | F |
3492 | 5899 | 0.396435 | ACTGTCGCTGAAATGGGTGA | 59.604 | 50.000 | 0.00 | 0.0 | 0.00 | 4.02 | F |
3493 | 5900 | 1.202758 | ACTGTCGCTGAAATGGGTGAA | 60.203 | 47.619 | 0.00 | 0.0 | 0.00 | 3.18 | F |
4130 | 8672 | 1.490490 | GCCACCATGTCCTCCTTCATA | 59.510 | 52.381 | 0.00 | 0.0 | 0.00 | 2.15 | F |
5549 | 10107 | 0.905337 | ACAGCCCGAAGAAGCCTAGT | 60.905 | 55.000 | 0.00 | 0.0 | 0.00 | 2.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1606 | 1868 | 0.034186 | GGGATTGTGGGCACTCATCA | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 | R |
2997 | 5373 | 0.811219 | CCAACAGCTGCGCTATAGCA | 60.811 | 55.000 | 23.99 | 6.02 | 45.96 | 3.49 | R |
3039 | 5415 | 1.552792 | AGCTACACAGGAAAGAGAGGC | 59.447 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 | R |
3473 | 5880 | 0.396435 | TCACCCATTTCAGCGACAGT | 59.604 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 | R |
3474 | 5881 | 1.522668 | TTCACCCATTTCAGCGACAG | 58.477 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 | R |
5015 | 9570 | 1.207593 | CTTTGTGAAGCGGCGAAGG | 59.792 | 57.895 | 12.98 | 0.00 | 0.00 | 3.46 | R |
5436 | 9994 | 1.613836 | AAGTAGACGAGGTTCACGGT | 58.386 | 50.000 | 0.00 | 0.00 | 34.93 | 4.83 | R |
5504 | 10062 | 1.219124 | GAGCTCAACATCTCCGGCA | 59.781 | 57.895 | 9.40 | 0.00 | 0.00 | 5.69 | R |
5651 | 10215 | 0.172127 | CGGGATCGATCGATGAGCAT | 59.828 | 55.000 | 33.86 | 11.11 | 39.00 | 3.79 | R |
6384 | 11038 | 2.543777 | AGTTGCAACCGCTAAGAGAA | 57.456 | 45.000 | 25.62 | 0.00 | 39.64 | 2.87 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
51 | 52 | 4.079901 | ACCTCGTTTACTATCTCCTCCTCA | 60.080 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
55 | 56 | 4.276431 | CGTTTACTATCTCCTCCTCACCTC | 59.724 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
57 | 58 | 3.306472 | ACTATCTCCTCCTCACCTCAC | 57.694 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
72 | 73 | 0.528017 | CTCACCGCAACTCTAGCAGA | 59.472 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
113 | 208 | 6.392625 | TCTAGGATACATATAGAATGCGCC | 57.607 | 41.667 | 4.18 | 0.00 | 41.41 | 6.53 |
129 | 224 | 6.540189 | AGAATGCGCCTCATAATATTATGGAC | 59.460 | 38.462 | 27.44 | 18.42 | 40.64 | 4.02 |
141 | 236 | 9.528847 | CATAATATTATGGACATTGTCGAAACG | 57.471 | 33.333 | 22.73 | 0.00 | 37.47 | 3.60 |
144 | 239 | 0.533085 | TGGACATTGTCGAAACGGCA | 60.533 | 50.000 | 10.56 | 0.00 | 40.58 | 5.69 |
147 | 242 | 1.154225 | CATTGTCGAAACGGCAGCC | 60.154 | 57.895 | 0.00 | 0.00 | 43.85 | 4.85 |
155 | 250 | 2.490115 | TCGAAACGGCAGCCATTAATTT | 59.510 | 40.909 | 13.30 | 3.33 | 0.00 | 1.82 |
159 | 254 | 1.476488 | ACGGCAGCCATTAATTTGACC | 59.524 | 47.619 | 13.30 | 0.00 | 0.00 | 4.02 |
173 | 268 | 7.810766 | TTAATTTGACCGCTCATTTCAATTC | 57.189 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
179 | 274 | 4.414852 | ACCGCTCATTTCAATTCAAATCG | 58.585 | 39.130 | 0.00 | 0.00 | 0.00 | 3.34 |
181 | 276 | 3.853103 | CGCTCATTTCAATTCAAATCGCA | 59.147 | 39.130 | 6.46 | 0.00 | 0.00 | 5.10 |
191 | 286 | 6.396450 | TCAATTCAAATCGCAAAATGGATGA | 58.604 | 32.000 | 0.00 | 0.00 | 0.00 | 2.92 |
197 | 292 | 8.945481 | TCAAATCGCAAAATGGATGATTATTT | 57.055 | 26.923 | 0.00 | 0.00 | 0.00 | 1.40 |
216 | 312 | 5.818136 | ATTTTATCGATCGGGCAATATGG | 57.182 | 39.130 | 16.41 | 0.00 | 0.00 | 2.74 |
217 | 313 | 3.973206 | TTATCGATCGGGCAATATGGT | 57.027 | 42.857 | 16.41 | 0.00 | 0.00 | 3.55 |
223 | 319 | 0.537143 | TCGGGCAATATGGTGCATCC | 60.537 | 55.000 | 0.00 | 0.00 | 46.81 | 3.51 |
227 | 323 | 0.039798 | GCAATATGGTGCATCCGCTG | 60.040 | 55.000 | 0.00 | 0.00 | 44.29 | 5.18 |
247 | 343 | 4.816385 | GCTGCAGTTGCTCTAATTATACCA | 59.184 | 41.667 | 16.64 | 0.00 | 42.66 | 3.25 |
248 | 344 | 5.277538 | GCTGCAGTTGCTCTAATTATACCAC | 60.278 | 44.000 | 16.64 | 0.00 | 42.66 | 4.16 |
249 | 345 | 4.808895 | TGCAGTTGCTCTAATTATACCACG | 59.191 | 41.667 | 5.62 | 0.00 | 42.66 | 4.94 |
251 | 347 | 5.522460 | GCAGTTGCTCTAATTATACCACGAA | 59.478 | 40.000 | 0.00 | 0.00 | 38.21 | 3.85 |
253 | 349 | 7.254795 | GCAGTTGCTCTAATTATACCACGAAAT | 60.255 | 37.037 | 0.00 | 0.00 | 38.21 | 2.17 |
254 | 350 | 8.276325 | CAGTTGCTCTAATTATACCACGAAATC | 58.724 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
255 | 351 | 7.169308 | AGTTGCTCTAATTATACCACGAAATCG | 59.831 | 37.037 | 0.48 | 0.48 | 46.33 | 3.34 |
256 | 352 | 5.924254 | TGCTCTAATTATACCACGAAATCGG | 59.076 | 40.000 | 7.81 | 0.00 | 44.95 | 4.18 |
257 | 353 | 5.347907 | GCTCTAATTATACCACGAAATCGGG | 59.652 | 44.000 | 7.81 | 2.51 | 44.95 | 5.14 |
258 | 354 | 5.232463 | TCTAATTATACCACGAAATCGGGC | 58.768 | 41.667 | 7.81 | 0.00 | 42.34 | 6.13 |
260 | 356 | 4.877378 | ATTATACCACGAAATCGGGCTA | 57.123 | 40.909 | 7.81 | 0.00 | 42.34 | 3.93 |
262 | 358 | 3.764237 | ATACCACGAAATCGGGCTAAT | 57.236 | 42.857 | 7.81 | 0.00 | 42.34 | 1.73 |
263 | 359 | 1.663695 | ACCACGAAATCGGGCTAATG | 58.336 | 50.000 | 7.81 | 0.00 | 42.34 | 1.90 |
264 | 360 | 1.065709 | ACCACGAAATCGGGCTAATGT | 60.066 | 47.619 | 7.81 | 0.00 | 42.34 | 2.71 |
265 | 361 | 1.597663 | CCACGAAATCGGGCTAATGTC | 59.402 | 52.381 | 7.81 | 0.00 | 42.34 | 3.06 |
266 | 362 | 2.550978 | CACGAAATCGGGCTAATGTCT | 58.449 | 47.619 | 7.81 | 0.00 | 44.95 | 3.41 |
267 | 363 | 2.540101 | CACGAAATCGGGCTAATGTCTC | 59.460 | 50.000 | 7.81 | 0.00 | 44.95 | 3.36 |
268 | 364 | 2.431057 | ACGAAATCGGGCTAATGTCTCT | 59.569 | 45.455 | 7.81 | 0.00 | 44.95 | 3.10 |
269 | 365 | 3.053455 | CGAAATCGGGCTAATGTCTCTC | 58.947 | 50.000 | 0.00 | 0.00 | 35.37 | 3.20 |
270 | 366 | 3.243569 | CGAAATCGGGCTAATGTCTCTCT | 60.244 | 47.826 | 0.00 | 0.00 | 35.37 | 3.10 |
271 | 367 | 4.698575 | GAAATCGGGCTAATGTCTCTCTT | 58.301 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
272 | 368 | 4.762289 | AATCGGGCTAATGTCTCTCTTT | 57.238 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
273 | 369 | 3.802948 | TCGGGCTAATGTCTCTCTTTC | 57.197 | 47.619 | 0.00 | 0.00 | 0.00 | 2.62 |
274 | 370 | 3.096852 | TCGGGCTAATGTCTCTCTTTCA | 58.903 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
275 | 371 | 3.131223 | TCGGGCTAATGTCTCTCTTTCAG | 59.869 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
276 | 372 | 3.202097 | GGGCTAATGTCTCTCTTTCAGC | 58.798 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
277 | 373 | 2.863137 | GGCTAATGTCTCTCTTTCAGCG | 59.137 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
278 | 374 | 3.516615 | GCTAATGTCTCTCTTTCAGCGT | 58.483 | 45.455 | 0.00 | 0.00 | 0.00 | 5.07 |
279 | 375 | 3.549873 | GCTAATGTCTCTCTTTCAGCGTC | 59.450 | 47.826 | 0.00 | 0.00 | 0.00 | 5.19 |
280 | 376 | 2.663826 | ATGTCTCTCTTTCAGCGTCC | 57.336 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
281 | 377 | 1.621992 | TGTCTCTCTTTCAGCGTCCT | 58.378 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
282 | 378 | 1.542030 | TGTCTCTCTTTCAGCGTCCTC | 59.458 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
283 | 379 | 1.816224 | GTCTCTCTTTCAGCGTCCTCT | 59.184 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
284 | 380 | 2.088423 | TCTCTCTTTCAGCGTCCTCTC | 58.912 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
285 | 381 | 2.091541 | CTCTCTTTCAGCGTCCTCTCT | 58.908 | 52.381 | 0.00 | 0.00 | 0.00 | 3.10 |
286 | 382 | 2.088423 | TCTCTTTCAGCGTCCTCTCTC | 58.912 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
287 | 383 | 2.091541 | CTCTTTCAGCGTCCTCTCTCT | 58.908 | 52.381 | 0.00 | 0.00 | 0.00 | 3.10 |
288 | 384 | 3.055021 | TCTCTTTCAGCGTCCTCTCTCTA | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
289 | 385 | 3.882888 | CTCTTTCAGCGTCCTCTCTCTAT | 59.117 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
290 | 386 | 5.037383 | TCTTTCAGCGTCCTCTCTCTATA | 57.963 | 43.478 | 0.00 | 0.00 | 0.00 | 1.31 |
291 | 387 | 5.626142 | TCTTTCAGCGTCCTCTCTCTATAT | 58.374 | 41.667 | 0.00 | 0.00 | 0.00 | 0.86 |
292 | 388 | 5.471797 | TCTTTCAGCGTCCTCTCTCTATATG | 59.528 | 44.000 | 0.00 | 0.00 | 0.00 | 1.78 |
293 | 389 | 4.359434 | TCAGCGTCCTCTCTCTATATGT | 57.641 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
294 | 390 | 5.485209 | TCAGCGTCCTCTCTCTATATGTA | 57.515 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
295 | 391 | 5.483811 | TCAGCGTCCTCTCTCTATATGTAG | 58.516 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
296 | 392 | 4.094294 | CAGCGTCCTCTCTCTATATGTAGC | 59.906 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
297 | 393 | 4.019681 | AGCGTCCTCTCTCTATATGTAGCT | 60.020 | 45.833 | 0.00 | 0.00 | 0.00 | 3.32 |
298 | 394 | 5.188163 | AGCGTCCTCTCTCTATATGTAGCTA | 59.812 | 44.000 | 0.00 | 0.00 | 0.00 | 3.32 |
299 | 395 | 5.875910 | GCGTCCTCTCTCTATATGTAGCTAA | 59.124 | 44.000 | 0.00 | 0.00 | 0.00 | 3.09 |
300 | 396 | 6.372103 | GCGTCCTCTCTCTATATGTAGCTAAA | 59.628 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
301 | 397 | 7.094720 | GCGTCCTCTCTCTATATGTAGCTAAAA | 60.095 | 40.741 | 0.00 | 0.00 | 0.00 | 1.52 |
302 | 398 | 8.952278 | CGTCCTCTCTCTATATGTAGCTAAAAT | 58.048 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
314 | 410 | 9.815306 | ATATGTAGCTAAAATACAGAGGAGAGA | 57.185 | 33.333 | 0.00 | 0.00 | 36.63 | 3.10 |
315 | 411 | 7.575414 | TGTAGCTAAAATACAGAGGAGAGAG | 57.425 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
316 | 412 | 5.529581 | AGCTAAAATACAGAGGAGAGAGC | 57.470 | 43.478 | 0.00 | 0.00 | 0.00 | 4.09 |
317 | 413 | 4.343814 | AGCTAAAATACAGAGGAGAGAGCC | 59.656 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
318 | 414 | 4.343814 | GCTAAAATACAGAGGAGAGAGCCT | 59.656 | 45.833 | 0.00 | 0.00 | 42.17 | 4.58 |
319 | 415 | 5.536916 | GCTAAAATACAGAGGAGAGAGCCTA | 59.463 | 44.000 | 0.00 | 0.00 | 38.73 | 3.93 |
320 | 416 | 5.862678 | AAAATACAGAGGAGAGAGCCTAC | 57.137 | 43.478 | 0.00 | 0.00 | 38.73 | 3.18 |
321 | 417 | 2.623878 | TACAGAGGAGAGAGCCTACG | 57.376 | 55.000 | 0.00 | 0.00 | 38.73 | 3.51 |
322 | 418 | 0.106918 | ACAGAGGAGAGAGCCTACGG | 60.107 | 60.000 | 0.00 | 0.00 | 38.73 | 4.02 |
323 | 419 | 0.106918 | CAGAGGAGAGAGCCTACGGT | 60.107 | 60.000 | 0.00 | 0.00 | 38.73 | 4.83 |
324 | 420 | 0.626916 | AGAGGAGAGAGCCTACGGTT | 59.373 | 55.000 | 0.00 | 0.00 | 38.73 | 4.44 |
325 | 421 | 0.741915 | GAGGAGAGAGCCTACGGTTG | 59.258 | 60.000 | 0.00 | 0.00 | 38.73 | 3.77 |
326 | 422 | 0.331954 | AGGAGAGAGCCTACGGTTGA | 59.668 | 55.000 | 0.00 | 0.00 | 36.22 | 3.18 |
327 | 423 | 0.741915 | GGAGAGAGCCTACGGTTGAG | 59.258 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
328 | 424 | 0.741915 | GAGAGAGCCTACGGTTGAGG | 59.258 | 60.000 | 0.00 | 0.00 | 37.12 | 3.86 |
329 | 425 | 0.684805 | AGAGAGCCTACGGTTGAGGG | 60.685 | 60.000 | 0.00 | 0.00 | 34.35 | 4.30 |
331 | 427 | 3.709567 | AGCCTACGGTTGAGGGTC | 58.290 | 61.111 | 0.00 | 0.00 | 40.91 | 4.46 |
332 | 428 | 2.183555 | GCCTACGGTTGAGGGTCG | 59.816 | 66.667 | 0.00 | 0.00 | 34.35 | 4.79 |
333 | 429 | 2.345760 | GCCTACGGTTGAGGGTCGA | 61.346 | 63.158 | 0.00 | 0.00 | 34.35 | 4.20 |
334 | 430 | 1.673808 | GCCTACGGTTGAGGGTCGAT | 61.674 | 60.000 | 0.00 | 0.00 | 34.35 | 3.59 |
335 | 431 | 1.683943 | CCTACGGTTGAGGGTCGATA | 58.316 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
336 | 432 | 2.026641 | CCTACGGTTGAGGGTCGATAA | 58.973 | 52.381 | 0.00 | 0.00 | 0.00 | 1.75 |
337 | 433 | 2.034305 | CCTACGGTTGAGGGTCGATAAG | 59.966 | 54.545 | 0.00 | 0.00 | 0.00 | 1.73 |
338 | 434 | 0.822164 | ACGGTTGAGGGTCGATAAGG | 59.178 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
339 | 435 | 0.822164 | CGGTTGAGGGTCGATAAGGT | 59.178 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
340 | 436 | 1.206371 | CGGTTGAGGGTCGATAAGGTT | 59.794 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
341 | 437 | 2.354403 | CGGTTGAGGGTCGATAAGGTTT | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
342 | 438 | 3.682696 | GGTTGAGGGTCGATAAGGTTTT | 58.317 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
343 | 439 | 4.077108 | GGTTGAGGGTCGATAAGGTTTTT | 58.923 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
344 | 440 | 5.247862 | GGTTGAGGGTCGATAAGGTTTTTA | 58.752 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
345 | 441 | 5.353400 | GGTTGAGGGTCGATAAGGTTTTTAG | 59.647 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
346 | 442 | 5.093849 | TGAGGGTCGATAAGGTTTTTAGG | 57.906 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
347 | 443 | 4.778958 | TGAGGGTCGATAAGGTTTTTAGGA | 59.221 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
348 | 444 | 5.105064 | TGAGGGTCGATAAGGTTTTTAGGAG | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
349 | 445 | 3.875727 | GGGTCGATAAGGTTTTTAGGAGC | 59.124 | 47.826 | 0.00 | 0.00 | 0.00 | 4.70 |
350 | 446 | 4.510571 | GGTCGATAAGGTTTTTAGGAGCA | 58.489 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
351 | 447 | 5.123936 | GGTCGATAAGGTTTTTAGGAGCAT | 58.876 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
352 | 448 | 5.589050 | GGTCGATAAGGTTTTTAGGAGCATT | 59.411 | 40.000 | 0.00 | 0.00 | 0.00 | 3.56 |
353 | 449 | 6.095021 | GGTCGATAAGGTTTTTAGGAGCATTT | 59.905 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
354 | 450 | 7.187480 | GTCGATAAGGTTTTTAGGAGCATTTC | 58.813 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
355 | 451 | 6.882140 | TCGATAAGGTTTTTAGGAGCATTTCA | 59.118 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
356 | 452 | 7.556275 | TCGATAAGGTTTTTAGGAGCATTTCAT | 59.444 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
357 | 453 | 8.190784 | CGATAAGGTTTTTAGGAGCATTTCATT | 58.809 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
358 | 454 | 9.521503 | GATAAGGTTTTTAGGAGCATTTCATTC | 57.478 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
359 | 455 | 6.916360 | AGGTTTTTAGGAGCATTTCATTCA | 57.084 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
360 | 456 | 6.928520 | AGGTTTTTAGGAGCATTTCATTCAG | 58.071 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
361 | 457 | 5.578336 | GGTTTTTAGGAGCATTTCATTCAGC | 59.422 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
362 | 458 | 4.621068 | TTTAGGAGCATTTCATTCAGCG | 57.379 | 40.909 | 0.00 | 0.00 | 0.00 | 5.18 |
363 | 459 | 0.737219 | AGGAGCATTTCATTCAGCGC | 59.263 | 50.000 | 0.00 | 0.00 | 0.00 | 5.92 |
364 | 460 | 0.590732 | GGAGCATTTCATTCAGCGCG | 60.591 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 |
365 | 461 | 0.374758 | GAGCATTTCATTCAGCGCGA | 59.625 | 50.000 | 12.10 | 0.00 | 0.00 | 5.87 |
366 | 462 | 0.097674 | AGCATTTCATTCAGCGCGAC | 59.902 | 50.000 | 12.10 | 0.04 | 0.00 | 5.19 |
367 | 463 | 0.097674 | GCATTTCATTCAGCGCGACT | 59.902 | 50.000 | 12.10 | 3.13 | 0.00 | 4.18 |
375 | 471 | 3.549467 | CAGCGCGACTGTTGCTTA | 58.451 | 55.556 | 12.10 | 0.00 | 41.86 | 3.09 |
376 | 472 | 1.859398 | CAGCGCGACTGTTGCTTAA | 59.141 | 52.632 | 12.10 | 0.00 | 41.86 | 1.85 |
377 | 473 | 0.179240 | CAGCGCGACTGTTGCTTAAG | 60.179 | 55.000 | 12.10 | 0.00 | 41.86 | 1.85 |
378 | 474 | 0.600255 | AGCGCGACTGTTGCTTAAGT | 60.600 | 50.000 | 12.10 | 0.00 | 34.80 | 2.24 |
379 | 475 | 0.234884 | GCGCGACTGTTGCTTAAGTT | 59.765 | 50.000 | 12.10 | 0.00 | 0.00 | 2.66 |
380 | 476 | 1.333791 | GCGCGACTGTTGCTTAAGTTT | 60.334 | 47.619 | 12.10 | 0.00 | 0.00 | 2.66 |
381 | 477 | 2.298300 | CGCGACTGTTGCTTAAGTTTG | 58.702 | 47.619 | 17.38 | 0.00 | 0.00 | 2.93 |
382 | 478 | 2.033236 | CGCGACTGTTGCTTAAGTTTGA | 60.033 | 45.455 | 17.38 | 0.00 | 0.00 | 2.69 |
383 | 479 | 3.289076 | GCGACTGTTGCTTAAGTTTGAC | 58.711 | 45.455 | 12.78 | 0.00 | 0.00 | 3.18 |
384 | 480 | 3.002348 | GCGACTGTTGCTTAAGTTTGACT | 59.998 | 43.478 | 12.78 | 0.00 | 0.00 | 3.41 |
385 | 481 | 4.210537 | GCGACTGTTGCTTAAGTTTGACTA | 59.789 | 41.667 | 12.78 | 0.00 | 0.00 | 2.59 |
386 | 482 | 5.667175 | CGACTGTTGCTTAAGTTTGACTAC | 58.333 | 41.667 | 4.02 | 0.00 | 0.00 | 2.73 |
390 | 486 | 6.073765 | ACTGTTGCTTAAGTTTGACTACATCG | 60.074 | 38.462 | 4.02 | 0.00 | 0.00 | 3.84 |
392 | 488 | 6.073980 | TGTTGCTTAAGTTTGACTACATCGTC | 60.074 | 38.462 | 4.02 | 0.00 | 34.52 | 4.20 |
395 | 491 | 5.515626 | GCTTAAGTTTGACTACATCGTCGAT | 59.484 | 40.000 | 0.75 | 0.75 | 36.71 | 3.59 |
409 | 507 | 0.096976 | GTCGATGTTTGTCCGCATGG | 59.903 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
432 | 530 | 4.569719 | TCCACTTCTTCCTTTATGACCC | 57.430 | 45.455 | 0.00 | 0.00 | 0.00 | 4.46 |
434 | 532 | 4.540099 | TCCACTTCTTCCTTTATGACCCAT | 59.460 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
435 | 533 | 4.641989 | CCACTTCTTCCTTTATGACCCATG | 59.358 | 45.833 | 0.00 | 0.00 | 0.00 | 3.66 |
440 | 538 | 3.644966 | TCCTTTATGACCCATGACCAC | 57.355 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
465 | 563 | 3.892740 | TTCACCACCATGGCCGACG | 62.893 | 63.158 | 13.04 | 0.00 | 42.67 | 5.12 |
466 | 564 | 4.386951 | CACCACCATGGCCGACGA | 62.387 | 66.667 | 13.04 | 0.00 | 42.67 | 4.20 |
467 | 565 | 4.388499 | ACCACCATGGCCGACGAC | 62.388 | 66.667 | 13.04 | 0.00 | 42.67 | 4.34 |
490 | 588 | 0.865111 | TGTTGTTGCATCGGAGTTCG | 59.135 | 50.000 | 0.00 | 0.00 | 40.90 | 3.95 |
499 | 597 | 1.933853 | CATCGGAGTTCGGGTGAATTC | 59.066 | 52.381 | 0.00 | 0.00 | 39.42 | 2.17 |
500 | 598 | 0.108992 | TCGGAGTTCGGGTGAATTCG | 60.109 | 55.000 | 0.04 | 0.00 | 40.63 | 3.34 |
507 | 605 | 3.682858 | AGTTCGGGTGAATTCGTATGTTG | 59.317 | 43.478 | 0.04 | 0.00 | 36.29 | 3.33 |
533 | 631 | 2.316361 | TTTGTCTGTTGGCACGCGTG | 62.316 | 55.000 | 34.01 | 34.01 | 0.00 | 5.34 |
544 | 642 | 1.570347 | GCACGCGTGTTTGGTCCATA | 61.570 | 55.000 | 36.80 | 0.00 | 0.00 | 2.74 |
548 | 646 | 1.939934 | CGCGTGTTTGGTCCATATGAT | 59.060 | 47.619 | 3.65 | 0.00 | 0.00 | 2.45 |
549 | 647 | 3.127589 | CGCGTGTTTGGTCCATATGATA | 58.872 | 45.455 | 3.65 | 0.00 | 0.00 | 2.15 |
550 | 648 | 3.745975 | CGCGTGTTTGGTCCATATGATAT | 59.254 | 43.478 | 3.65 | 0.00 | 0.00 | 1.63 |
551 | 649 | 4.377328 | CGCGTGTTTGGTCCATATGATATG | 60.377 | 45.833 | 3.65 | 5.46 | 0.00 | 1.78 |
552 | 650 | 4.754618 | GCGTGTTTGGTCCATATGATATGA | 59.245 | 41.667 | 13.79 | 0.00 | 0.00 | 2.15 |
584 | 689 | 6.223852 | TCAAATGTTCCAAGTCTCTGTCTAC | 58.776 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
666 | 776 | 3.331150 | ACTGCGTGATATCCGAACAAAA | 58.669 | 40.909 | 15.11 | 0.00 | 0.00 | 2.44 |
671 | 781 | 4.647964 | CGTGATATCCGAACAAAAACCTG | 58.352 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
672 | 782 | 4.436852 | CGTGATATCCGAACAAAAACCTGG | 60.437 | 45.833 | 0.00 | 0.00 | 0.00 | 4.45 |
675 | 785 | 0.395862 | TCCGAACAAAAACCTGGCCA | 60.396 | 50.000 | 4.71 | 4.71 | 0.00 | 5.36 |
681 | 792 | 3.643199 | ACAAAAACCTGGCCACATTTT | 57.357 | 38.095 | 14.02 | 14.02 | 0.00 | 1.82 |
709 | 823 | 0.608640 | AGCAAAGACCCTCTACCGTG | 59.391 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
759 | 877 | 2.033801 | AGCTAGCTGCATTTTTATGGCG | 59.966 | 45.455 | 18.57 | 0.00 | 45.94 | 5.69 |
762 | 880 | 0.525242 | GCTGCATTTTTATGGCGCGA | 60.525 | 50.000 | 12.10 | 0.00 | 0.00 | 5.87 |
814 | 946 | 0.238289 | ATCACGCCGTTGCTTTCTTG | 59.762 | 50.000 | 0.00 | 0.00 | 34.43 | 3.02 |
848 | 980 | 3.530535 | TGTATGAATGTACACGCAGCAT | 58.469 | 40.909 | 0.00 | 0.56 | 30.00 | 3.79 |
850 | 982 | 2.091852 | TGAATGTACACGCAGCATCA | 57.908 | 45.000 | 0.00 | 0.00 | 0.00 | 3.07 |
852 | 984 | 0.729116 | AATGTACACGCAGCATCAGC | 59.271 | 50.000 | 0.00 | 0.00 | 42.56 | 4.26 |
869 | 1001 | 1.003718 | GCTGCCCCGTTTCACTACT | 60.004 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
883 | 1015 | 7.087639 | CGTTTCACTACTGAGAGAGAAAGATT | 58.912 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
887 | 1045 | 6.035843 | CACTACTGAGAGAGAAAGATTGAGC | 58.964 | 44.000 | 0.00 | 0.00 | 0.00 | 4.26 |
889 | 1047 | 3.761218 | ACTGAGAGAGAAAGATTGAGCGA | 59.239 | 43.478 | 0.00 | 0.00 | 0.00 | 4.93 |
890 | 1048 | 4.142403 | ACTGAGAGAGAAAGATTGAGCGAG | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 5.03 |
891 | 1049 | 4.013050 | TGAGAGAGAAAGATTGAGCGAGA | 58.987 | 43.478 | 0.00 | 0.00 | 0.00 | 4.04 |
892 | 1050 | 4.460731 | TGAGAGAGAAAGATTGAGCGAGAA | 59.539 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
921 | 1079 | 5.014649 | AGAGAAACTTAATTTGCTCCCTCCT | 59.985 | 40.000 | 9.40 | 0.00 | 30.69 | 3.69 |
923 | 1081 | 5.478332 | AGAAACTTAATTTGCTCCCTCCTTG | 59.522 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
924 | 1082 | 4.388577 | ACTTAATTTGCTCCCTCCTTGT | 57.611 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
925 | 1083 | 4.082125 | ACTTAATTTGCTCCCTCCTTGTG | 58.918 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
926 | 1084 | 2.683211 | AATTTGCTCCCTCCTTGTGT | 57.317 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
927 | 1085 | 2.206576 | ATTTGCTCCCTCCTTGTGTC | 57.793 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
928 | 1086 | 0.110486 | TTTGCTCCCTCCTTGTGTCC | 59.890 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
929 | 1087 | 2.111999 | TTGCTCCCTCCTTGTGTCCG | 62.112 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
930 | 1088 | 2.584391 | GCTCCCTCCTTGTGTCCGT | 61.584 | 63.158 | 0.00 | 0.00 | 0.00 | 4.69 |
931 | 1089 | 1.255667 | GCTCCCTCCTTGTGTCCGTA | 61.256 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
932 | 1090 | 1.486211 | CTCCCTCCTTGTGTCCGTAT | 58.514 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
933 | 1091 | 2.662866 | CTCCCTCCTTGTGTCCGTATA | 58.337 | 52.381 | 0.00 | 0.00 | 0.00 | 1.47 |
934 | 1092 | 2.361438 | CTCCCTCCTTGTGTCCGTATAC | 59.639 | 54.545 | 0.00 | 0.00 | 0.00 | 1.47 |
967 | 1125 | 5.707066 | AGTATCTTTGGAAGCAAGATCCT | 57.293 | 39.130 | 0.00 | 0.00 | 39.71 | 3.24 |
971 | 1129 | 9.110382 | AGTATCTTTGGAAGCAAGATCCTATAT | 57.890 | 33.333 | 0.00 | 0.00 | 39.71 | 0.86 |
974 | 1132 | 7.911651 | TCTTTGGAAGCAAGATCCTATATAGG | 58.088 | 38.462 | 21.21 | 21.21 | 45.02 | 2.57 |
978 | 1165 | 3.034635 | AGCAAGATCCTATATAGGGCCG | 58.965 | 50.000 | 25.54 | 14.03 | 43.79 | 6.13 |
993 | 1180 | 3.554342 | CCGGCATCTCCTCCCCTG | 61.554 | 72.222 | 0.00 | 0.00 | 0.00 | 4.45 |
994 | 1181 | 4.247380 | CGGCATCTCCTCCCCTGC | 62.247 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
995 | 1182 | 2.771762 | GGCATCTCCTCCCCTGCT | 60.772 | 66.667 | 0.00 | 0.00 | 35.03 | 4.24 |
996 | 1183 | 2.381941 | GGCATCTCCTCCCCTGCTT | 61.382 | 63.158 | 0.00 | 0.00 | 35.03 | 3.91 |
1002 | 1189 | 1.613630 | TCCTCCCCTGCTTCCTCAC | 60.614 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
1031 | 1218 | 4.223953 | CACCACACCATCTACCTACCTAT | 58.776 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
1039 | 1228 | 0.039437 | CTACCTACCTATGTGCGCCG | 60.039 | 60.000 | 4.18 | 0.00 | 0.00 | 6.46 |
1274 | 1513 | 2.397044 | AGGTGATTTTGCCTTTCCCA | 57.603 | 45.000 | 0.00 | 0.00 | 0.00 | 4.37 |
1294 | 1533 | 0.179207 | GCATGCACATGTCACACTCG | 60.179 | 55.000 | 14.21 | 0.00 | 40.80 | 4.18 |
1301 | 1540 | 2.071540 | ACATGTCACACTCGCATCTTG | 58.928 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
1320 | 1560 | 3.283259 | TGTCTTCCATCTCTCGCTCTA | 57.717 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
1356 | 1604 | 5.507482 | CCATTAGATCCTGCTGAATTTGCTG | 60.507 | 44.000 | 6.07 | 5.47 | 0.00 | 4.41 |
1360 | 1608 | 0.736325 | CCTGCTGAATTTGCTGCTGC | 60.736 | 55.000 | 8.89 | 8.89 | 40.20 | 5.25 |
1402 | 1650 | 5.678107 | GCCTGGATCTCAGCAAACTAATTTG | 60.678 | 44.000 | 0.00 | 0.00 | 46.81 | 2.32 |
1433 | 1681 | 1.066573 | CAGTCTGATGAGGAAACGGCT | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 5.52 |
1461 | 1709 | 2.218603 | CAAACAGTAAAGGCACGAGGT | 58.781 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
1462 | 1710 | 2.165319 | AACAGTAAAGGCACGAGGTC | 57.835 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1606 | 1868 | 0.947244 | CTTTGCTTTGCCTGACGACT | 59.053 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1623 | 1885 | 2.012673 | GACTGATGAGTGCCCACAATC | 58.987 | 52.381 | 0.00 | 4.56 | 41.26 | 2.67 |
1628 | 1890 | 0.409092 | TGAGTGCCCACAATCCCATT | 59.591 | 50.000 | 0.82 | 0.00 | 40.16 | 3.16 |
1634 | 1896 | 4.162131 | AGTGCCCACAATCCCATTAAAATC | 59.838 | 41.667 | 0.82 | 0.00 | 0.00 | 2.17 |
1674 | 1939 | 2.592574 | TGCTGTGTCTGCAGGTGC | 60.593 | 61.111 | 15.13 | 11.45 | 42.50 | 5.01 |
1754 | 2181 | 6.019801 | AGAGCTATGTACGCGTAAAATTTCAG | 60.020 | 38.462 | 22.44 | 12.56 | 0.00 | 3.02 |
1756 | 2183 | 5.671140 | GCTATGTACGCGTAAAATTTCAGTG | 59.329 | 40.000 | 22.44 | 10.83 | 0.00 | 3.66 |
1766 | 2193 | 7.325097 | CGCGTAAAATTTCAGTGGTAAATCTTT | 59.675 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
1773 | 2200 | 4.130857 | TCAGTGGTAAATCTTTTCACGCA | 58.869 | 39.130 | 0.00 | 0.00 | 32.35 | 5.24 |
1780 | 2207 | 5.173131 | GGTAAATCTTTTCACGCACACAAAG | 59.827 | 40.000 | 0.00 | 0.00 | 0.00 | 2.77 |
1781 | 2208 | 4.630894 | AATCTTTTCACGCACACAAAGA | 57.369 | 36.364 | 0.00 | 0.00 | 39.09 | 2.52 |
1783 | 2210 | 2.111756 | CTTTTCACGCACACAAAGAGC | 58.888 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
1799 | 2226 | 0.443869 | GAGCGAAATCATGTGCGTGT | 59.556 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
1804 | 2231 | 4.331443 | AGCGAAATCATGTGCGTGTAAATA | 59.669 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
1814 | 2241 | 7.597369 | TCATGTGCGTGTAAATAGGATGTATAC | 59.403 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
2607 | 3034 | 2.353406 | CGTCGAAGAAGGTACCCAATGT | 60.353 | 50.000 | 8.74 | 0.00 | 39.69 | 2.71 |
3039 | 5415 | 2.602257 | TGCTCTTATGGATCCACACG | 57.398 | 50.000 | 18.99 | 2.58 | 0.00 | 4.49 |
3040 | 5416 | 1.221414 | GCTCTTATGGATCCACACGC | 58.779 | 55.000 | 18.99 | 11.76 | 0.00 | 5.34 |
3041 | 5417 | 1.871080 | CTCTTATGGATCCACACGCC | 58.129 | 55.000 | 18.99 | 0.00 | 0.00 | 5.68 |
3083 | 5459 | 5.523438 | AAAGTTTCAGAATTTACCCGCAA | 57.477 | 34.783 | 0.00 | 0.00 | 0.00 | 4.85 |
3087 | 5463 | 5.983118 | AGTTTCAGAATTTACCCGCAAAAAG | 59.017 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3088 | 5464 | 5.776173 | TTCAGAATTTACCCGCAAAAAGA | 57.224 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
3090 | 5466 | 6.150396 | TCAGAATTTACCCGCAAAAAGAAA | 57.850 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3091 | 5467 | 6.212955 | TCAGAATTTACCCGCAAAAAGAAAG | 58.787 | 36.000 | 0.00 | 0.00 | 0.00 | 2.62 |
3092 | 5468 | 4.988540 | AGAATTTACCCGCAAAAAGAAAGC | 59.011 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
3093 | 5469 | 4.600692 | ATTTACCCGCAAAAAGAAAGCT | 57.399 | 36.364 | 0.00 | 0.00 | 0.00 | 3.74 |
3095 | 5471 | 2.509052 | ACCCGCAAAAAGAAAGCTTC | 57.491 | 45.000 | 0.00 | 0.00 | 31.82 | 3.86 |
3096 | 5472 | 1.754226 | ACCCGCAAAAAGAAAGCTTCA | 59.246 | 42.857 | 0.00 | 0.00 | 31.82 | 3.02 |
3097 | 5473 | 2.223805 | ACCCGCAAAAAGAAAGCTTCAG | 60.224 | 45.455 | 0.00 | 0.00 | 31.82 | 3.02 |
3098 | 5474 | 2.034558 | CCCGCAAAAAGAAAGCTTCAGA | 59.965 | 45.455 | 0.00 | 0.00 | 31.82 | 3.27 |
3099 | 5475 | 3.490761 | CCCGCAAAAAGAAAGCTTCAGAA | 60.491 | 43.478 | 0.00 | 0.00 | 31.82 | 3.02 |
3102 | 5478 | 5.234972 | CCGCAAAAAGAAAGCTTCAGAATTT | 59.765 | 36.000 | 0.00 | 0.00 | 31.82 | 1.82 |
3103 | 5479 | 6.420604 | CCGCAAAAAGAAAGCTTCAGAATTTA | 59.579 | 34.615 | 0.00 | 0.00 | 31.82 | 1.40 |
3104 | 5480 | 7.276495 | CGCAAAAAGAAAGCTTCAGAATTTAC | 58.724 | 34.615 | 0.00 | 0.00 | 31.82 | 2.01 |
3106 | 5482 | 7.224557 | GCAAAAAGAAAGCTTCAGAATTTACCA | 59.775 | 33.333 | 0.00 | 0.00 | 31.82 | 3.25 |
3107 | 5483 | 8.758715 | CAAAAAGAAAGCTTCAGAATTTACCAG | 58.241 | 33.333 | 0.00 | 0.00 | 31.82 | 4.00 |
3108 | 5484 | 5.635417 | AGAAAGCTTCAGAATTTACCAGC | 57.365 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 |
3109 | 5485 | 5.072741 | AGAAAGCTTCAGAATTTACCAGCA | 58.927 | 37.500 | 0.00 | 0.00 | 0.00 | 4.41 |
3110 | 5486 | 5.536161 | AGAAAGCTTCAGAATTTACCAGCAA | 59.464 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
3111 | 5487 | 5.789643 | AAGCTTCAGAATTTACCAGCAAA | 57.210 | 34.783 | 0.00 | 0.00 | 0.00 | 3.68 |
3274 | 5675 | 4.226168 | CCCAAATTCCACTCTTCTAGGACT | 59.774 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
3323 | 5725 | 8.803397 | TCCTTACCTTCTTTATTTTTCCTAGC | 57.197 | 34.615 | 0.00 | 0.00 | 0.00 | 3.42 |
3324 | 5726 | 7.551617 | TCCTTACCTTCTTTATTTTTCCTAGCG | 59.448 | 37.037 | 0.00 | 0.00 | 0.00 | 4.26 |
3325 | 5727 | 5.562506 | ACCTTCTTTATTTTTCCTAGCGC | 57.437 | 39.130 | 0.00 | 0.00 | 0.00 | 5.92 |
3367 | 5772 | 7.548196 | CACTTTTTGTGTAGTAGTCCAAGAA | 57.452 | 36.000 | 0.00 | 0.00 | 41.53 | 2.52 |
3373 | 5778 | 6.982160 | TGTGTAGTAGTCCAAGAACCTTTA | 57.018 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
3374 | 5779 | 7.364149 | TGTGTAGTAGTCCAAGAACCTTTAA | 57.636 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
3375 | 5780 | 7.794041 | TGTGTAGTAGTCCAAGAACCTTTAAA | 58.206 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
3376 | 5781 | 7.929785 | TGTGTAGTAGTCCAAGAACCTTTAAAG | 59.070 | 37.037 | 8.32 | 8.32 | 0.00 | 1.85 |
3377 | 5782 | 8.146412 | GTGTAGTAGTCCAAGAACCTTTAAAGA | 58.854 | 37.037 | 16.98 | 0.00 | 0.00 | 2.52 |
3380 | 5786 | 8.447924 | AGTAGTCCAAGAACCTTTAAAGAAAC | 57.552 | 34.615 | 16.98 | 7.01 | 0.00 | 2.78 |
3398 | 5804 | 4.701171 | AGAAACAACTTTACGTGGTGGAAA | 59.299 | 37.500 | 0.00 | 0.00 | 27.64 | 3.13 |
3400 | 5806 | 5.388408 | AACAACTTTACGTGGTGGAAAAA | 57.612 | 34.783 | 0.00 | 0.00 | 27.64 | 1.94 |
3403 | 5809 | 7.098074 | ACAACTTTACGTGGTGGAAAAATAA | 57.902 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3424 | 5831 | 3.244887 | ACTTTTCCTCTTCCTTTGGGG | 57.755 | 47.619 | 0.00 | 0.00 | 0.00 | 4.96 |
3425 | 5832 | 1.895798 | CTTTTCCTCTTCCTTTGGGGC | 59.104 | 52.381 | 0.00 | 0.00 | 34.39 | 5.80 |
3426 | 5833 | 0.856982 | TTTCCTCTTCCTTTGGGGCA | 59.143 | 50.000 | 0.00 | 0.00 | 34.39 | 5.36 |
3431 | 5838 | 2.175499 | CCTCTTCCTTTGGGGCATGATA | 59.825 | 50.000 | 0.00 | 0.00 | 34.39 | 2.15 |
3432 | 5839 | 3.217626 | CTCTTCCTTTGGGGCATGATAC | 58.782 | 50.000 | 0.00 | 0.00 | 34.39 | 2.24 |
3433 | 5840 | 2.091885 | TCTTCCTTTGGGGCATGATACC | 60.092 | 50.000 | 0.00 | 0.00 | 34.39 | 2.73 |
3442 | 5849 | 1.683629 | GGGCATGATACCGGGTTTTCA | 60.684 | 52.381 | 4.31 | 9.96 | 0.00 | 2.69 |
3444 | 5851 | 1.065551 | GCATGATACCGGGTTTTCAGC | 59.934 | 52.381 | 4.31 | 10.70 | 0.00 | 4.26 |
3448 | 5855 | 3.492337 | TGATACCGGGTTTTCAGCTTTT | 58.508 | 40.909 | 4.31 | 0.00 | 0.00 | 2.27 |
3467 | 5874 | 3.842007 | TTTTTGTAACCTCCGTCCAGA | 57.158 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
3468 | 5875 | 3.842007 | TTTTGTAACCTCCGTCCAGAA | 57.158 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
3469 | 5876 | 3.842007 | TTTGTAACCTCCGTCCAGAAA | 57.158 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
3470 | 5877 | 4.360951 | TTTGTAACCTCCGTCCAGAAAT | 57.639 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
3471 | 5878 | 4.360951 | TTGTAACCTCCGTCCAGAAATT | 57.639 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
3473 | 5880 | 5.486735 | TGTAACCTCCGTCCAGAAATTAA | 57.513 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
3474 | 5881 | 5.240121 | TGTAACCTCCGTCCAGAAATTAAC | 58.760 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
3475 | 5882 | 4.635699 | AACCTCCGTCCAGAAATTAACT | 57.364 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
3477 | 5884 | 3.326880 | ACCTCCGTCCAGAAATTAACTGT | 59.673 | 43.478 | 10.32 | 0.00 | 34.04 | 3.55 |
3478 | 5885 | 3.933332 | CCTCCGTCCAGAAATTAACTGTC | 59.067 | 47.826 | 10.32 | 4.48 | 34.04 | 3.51 |
3479 | 5886 | 3.581755 | TCCGTCCAGAAATTAACTGTCG | 58.418 | 45.455 | 10.32 | 12.40 | 34.04 | 4.35 |
3480 | 5887 | 2.093783 | CCGTCCAGAAATTAACTGTCGC | 59.906 | 50.000 | 10.32 | 2.23 | 34.04 | 5.19 |
3482 | 5889 | 3.181530 | CGTCCAGAAATTAACTGTCGCTG | 60.182 | 47.826 | 10.32 | 0.00 | 34.04 | 5.18 |
3483 | 5890 | 3.994392 | GTCCAGAAATTAACTGTCGCTGA | 59.006 | 43.478 | 10.32 | 0.58 | 34.04 | 4.26 |
3484 | 5891 | 4.451096 | GTCCAGAAATTAACTGTCGCTGAA | 59.549 | 41.667 | 10.32 | 0.00 | 34.04 | 3.02 |
3486 | 5893 | 5.705441 | TCCAGAAATTAACTGTCGCTGAAAT | 59.295 | 36.000 | 10.32 | 0.00 | 34.04 | 2.17 |
3487 | 5894 | 5.796935 | CCAGAAATTAACTGTCGCTGAAATG | 59.203 | 40.000 | 10.32 | 0.00 | 34.04 | 2.32 |
3488 | 5895 | 5.796935 | CAGAAATTAACTGTCGCTGAAATGG | 59.203 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3489 | 5896 | 4.701956 | AATTAACTGTCGCTGAAATGGG | 57.298 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
3490 | 5897 | 2.851263 | TAACTGTCGCTGAAATGGGT | 57.149 | 45.000 | 0.00 | 0.00 | 0.00 | 4.51 |
3491 | 5898 | 1.238439 | AACTGTCGCTGAAATGGGTG | 58.762 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3492 | 5899 | 0.396435 | ACTGTCGCTGAAATGGGTGA | 59.604 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3493 | 5900 | 1.202758 | ACTGTCGCTGAAATGGGTGAA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
3494 | 5901 | 2.086869 | CTGTCGCTGAAATGGGTGAAT | 58.913 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
3495 | 5902 | 2.083774 | TGTCGCTGAAATGGGTGAATC | 58.916 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
3496 | 5903 | 2.290260 | TGTCGCTGAAATGGGTGAATCT | 60.290 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
3497 | 5904 | 3.055458 | TGTCGCTGAAATGGGTGAATCTA | 60.055 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
3498 | 5905 | 3.557595 | GTCGCTGAAATGGGTGAATCTAG | 59.442 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
3499 | 5906 | 3.450817 | TCGCTGAAATGGGTGAATCTAGA | 59.549 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
3500 | 5907 | 3.557595 | CGCTGAAATGGGTGAATCTAGAC | 59.442 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
3501 | 5908 | 3.879892 | GCTGAAATGGGTGAATCTAGACC | 59.120 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
3502 | 5909 | 4.626287 | GCTGAAATGGGTGAATCTAGACCA | 60.626 | 45.833 | 0.00 | 0.00 | 33.48 | 4.02 |
3503 | 5910 | 5.688807 | CTGAAATGGGTGAATCTAGACCAT | 58.311 | 41.667 | 6.09 | 6.09 | 43.39 | 3.55 |
3504 | 5911 | 5.684704 | TGAAATGGGTGAATCTAGACCATC | 58.315 | 41.667 | 11.20 | 5.67 | 40.84 | 3.51 |
3506 | 5913 | 3.026707 | TGGGTGAATCTAGACCATCGA | 57.973 | 47.619 | 0.00 | 0.00 | 33.48 | 3.59 |
3507 | 5914 | 2.959030 | TGGGTGAATCTAGACCATCGAG | 59.041 | 50.000 | 0.00 | 0.00 | 33.48 | 4.04 |
3508 | 5915 | 2.959707 | GGGTGAATCTAGACCATCGAGT | 59.040 | 50.000 | 0.00 | 0.00 | 33.48 | 4.18 |
3510 | 5917 | 4.583489 | GGGTGAATCTAGACCATCGAGTAA | 59.417 | 45.833 | 0.00 | 0.00 | 33.48 | 2.24 |
3511 | 5918 | 5.244178 | GGGTGAATCTAGACCATCGAGTAAT | 59.756 | 44.000 | 0.00 | 0.00 | 33.48 | 1.89 |
3512 | 5919 | 6.239345 | GGGTGAATCTAGACCATCGAGTAATT | 60.239 | 42.308 | 0.00 | 0.00 | 33.48 | 1.40 |
3515 | 5922 | 9.562583 | GTGAATCTAGACCATCGAGTAATTATC | 57.437 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
3520 | 5927 | 9.521841 | TCTAGACCATCGAGTAATTATCAATCT | 57.478 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
3522 | 5929 | 8.824159 | AGACCATCGAGTAATTATCAATCTTG | 57.176 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
3523 | 5930 | 8.424918 | AGACCATCGAGTAATTATCAATCTTGT | 58.575 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3524 | 5931 | 8.594881 | ACCATCGAGTAATTATCAATCTTGTC | 57.405 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
3525 | 5932 | 7.382488 | ACCATCGAGTAATTATCAATCTTGTCG | 59.618 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
3526 | 5933 | 7.382488 | CCATCGAGTAATTATCAATCTTGTCGT | 59.618 | 37.037 | 0.00 | 0.00 | 0.00 | 4.34 |
3527 | 5934 | 7.909777 | TCGAGTAATTATCAATCTTGTCGTC | 57.090 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3528 | 5935 | 7.477494 | TCGAGTAATTATCAATCTTGTCGTCA | 58.523 | 34.615 | 0.00 | 0.00 | 0.00 | 4.35 |
3529 | 5936 | 7.431376 | TCGAGTAATTATCAATCTTGTCGTCAC | 59.569 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
3530 | 5937 | 7.220108 | CGAGTAATTATCAATCTTGTCGTCACA | 59.780 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
3531 | 5938 | 8.412608 | AGTAATTATCAATCTTGTCGTCACAG | 57.587 | 34.615 | 0.00 | 0.00 | 32.71 | 3.66 |
3532 | 5939 | 6.668541 | AATTATCAATCTTGTCGTCACAGG | 57.331 | 37.500 | 0.00 | 0.00 | 32.71 | 4.00 |
3555 | 5962 | 7.059488 | CAGGACGACTTCAAAAATAAAATCACG | 59.941 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
3556 | 5963 | 6.183359 | GGACGACTTCAAAAATAAAATCACGC | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 5.34 |
3557 | 5964 | 6.435428 | ACGACTTCAAAAATAAAATCACGCT | 58.565 | 32.000 | 0.00 | 0.00 | 0.00 | 5.07 |
3559 | 5966 | 7.096640 | ACGACTTCAAAAATAAAATCACGCTTG | 60.097 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
3560 | 5967 | 7.096640 | CGACTTCAAAAATAAAATCACGCTTGT | 60.097 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3561 | 5968 | 9.176181 | GACTTCAAAAATAAAATCACGCTTGTA | 57.824 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
3565 | 5972 | 8.132362 | TCAAAAATAAAATCACGCTTGTACAGT | 58.868 | 29.630 | 0.00 | 0.00 | 0.00 | 3.55 |
3572 | 6250 | 4.461992 | TCACGCTTGTACAGTAAAAAGC | 57.538 | 40.909 | 15.13 | 15.13 | 41.26 | 3.51 |
3580 | 6258 | 7.084486 | GCTTGTACAGTAAAAAGCAGCTAAAT | 58.916 | 34.615 | 18.34 | 0.00 | 43.55 | 1.40 |
3615 | 6293 | 5.350914 | CACACTAAGCCAAGAAGAAGATCAG | 59.649 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3616 | 6294 | 5.012561 | ACACTAAGCCAAGAAGAAGATCAGT | 59.987 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3619 | 6297 | 7.604164 | CACTAAGCCAAGAAGAAGATCAGTAAA | 59.396 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
3626 | 6304 | 6.493449 | AGAAGAAGATCAGTAAAAAGCAGC | 57.507 | 37.500 | 0.00 | 0.00 | 0.00 | 5.25 |
3627 | 6305 | 6.237154 | AGAAGAAGATCAGTAAAAAGCAGCT | 58.763 | 36.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3629 | 6307 | 7.880195 | AGAAGAAGATCAGTAAAAAGCAGCTAA | 59.120 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
3631 | 6309 | 8.572855 | AGAAGATCAGTAAAAAGCAGCTAAAT | 57.427 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
3658 | 6336 | 7.849804 | ACATATAACACACTAAGCCAAGAAG | 57.150 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3659 | 6337 | 7.620880 | ACATATAACACACTAAGCCAAGAAGA | 58.379 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
3661 | 6339 | 8.607459 | CATATAACACACTAAGCCAAGAAGAAG | 58.393 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
3663 | 6341 | 5.234466 | ACACACTAAGCCAAGAAGAAGAT | 57.766 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
3664 | 6342 | 5.241662 | ACACACTAAGCCAAGAAGAAGATC | 58.758 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
3665 | 6343 | 5.221722 | ACACACTAAGCCAAGAAGAAGATCA | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3666 | 6344 | 5.350914 | CACACTAAGCCAAGAAGAAGATCAG | 59.649 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3667 | 6345 | 5.012561 | ACACTAAGCCAAGAAGAAGATCAGT | 59.987 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3669 | 6347 | 6.756074 | CACTAAGCCAAGAAGAAGATCAGTAG | 59.244 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
3670 | 6348 | 5.753721 | AAGCCAAGAAGAAGATCAGTAGT | 57.246 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
3671 | 6349 | 5.337578 | AGCCAAGAAGAAGATCAGTAGTC | 57.662 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
3672 | 6350 | 5.022787 | AGCCAAGAAGAAGATCAGTAGTCT | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
3673 | 6351 | 5.127031 | AGCCAAGAAGAAGATCAGTAGTCTC | 59.873 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3675 | 6353 | 5.124776 | CCAAGAAGAAGATCAGTAGTCTCGT | 59.875 | 44.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3676 | 6354 | 5.811399 | AGAAGAAGATCAGTAGTCTCGTG | 57.189 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
3677 | 6355 | 5.250200 | AGAAGAAGATCAGTAGTCTCGTGT | 58.750 | 41.667 | 0.00 | 0.00 | 0.00 | 4.49 |
3678 | 6356 | 4.955925 | AGAAGATCAGTAGTCTCGTGTG | 57.044 | 45.455 | 0.00 | 0.00 | 0.00 | 3.82 |
3679 | 6357 | 3.692101 | AGAAGATCAGTAGTCTCGTGTGG | 59.308 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
3680 | 6358 | 3.074675 | AGATCAGTAGTCTCGTGTGGT | 57.925 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
3793 | 8233 | 8.385111 | GCGCTGTTATGTCTACATTTTACTTTA | 58.615 | 33.333 | 0.00 | 0.00 | 37.76 | 1.85 |
3811 | 8252 | 6.803154 | ACTTTACTGGATTGTAGAAACAGC | 57.197 | 37.500 | 7.36 | 0.00 | 36.83 | 4.40 |
3812 | 8253 | 6.296026 | ACTTTACTGGATTGTAGAAACAGCA | 58.704 | 36.000 | 7.36 | 0.00 | 36.83 | 4.41 |
3813 | 8254 | 6.942576 | ACTTTACTGGATTGTAGAAACAGCAT | 59.057 | 34.615 | 7.36 | 0.00 | 36.83 | 3.79 |
3815 | 8256 | 8.492673 | TTTACTGGATTGTAGAAACAGCATAG | 57.507 | 34.615 | 7.36 | 0.00 | 36.83 | 2.23 |
3816 | 8257 | 5.431765 | ACTGGATTGTAGAAACAGCATAGG | 58.568 | 41.667 | 7.36 | 0.00 | 36.83 | 2.57 |
3851 | 8302 | 7.647715 | ACTGAATTTCACAAAAGTTGAATACCG | 59.352 | 33.333 | 0.00 | 0.00 | 33.03 | 4.02 |
3857 | 8308 | 7.181143 | TCACAAAAGTTGAATACCGTTAGTC | 57.819 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4070 | 8596 | 2.879462 | GTCTTCGGCGCCTACGTG | 60.879 | 66.667 | 26.68 | 8.63 | 42.83 | 4.49 |
4130 | 8672 | 1.490490 | GCCACCATGTCCTCCTTCATA | 59.510 | 52.381 | 0.00 | 0.00 | 0.00 | 2.15 |
4208 | 8751 | 2.676471 | GCGTCCAAGGGGCAACAT | 60.676 | 61.111 | 0.00 | 0.00 | 39.74 | 2.71 |
4269 | 8812 | 4.742012 | AGTGTCCTTCTTCTTCCTAGTCA | 58.258 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
4334 | 8877 | 1.525995 | CCAGTTCAACCCACGCACT | 60.526 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
4337 | 8880 | 2.186826 | GTTCAACCCACGCACTGCT | 61.187 | 57.895 | 0.00 | 0.00 | 0.00 | 4.24 |
5060 | 9615 | 2.356278 | GGCATCACCCTGCTCCAA | 59.644 | 61.111 | 0.00 | 0.00 | 41.95 | 3.53 |
5096 | 9651 | 2.964925 | GCGTTGTCTGTGGCGACA | 60.965 | 61.111 | 0.33 | 0.33 | 41.82 | 4.35 |
5267 | 9825 | 1.965930 | GAACATGCGGAGTGTGGCA | 60.966 | 57.895 | 0.00 | 0.00 | 44.29 | 4.92 |
5504 | 10062 | 3.352338 | GAAGTCCGACGATGCCGGT | 62.352 | 63.158 | 1.90 | 0.00 | 46.53 | 5.28 |
5544 | 10102 | 2.048127 | ACGACAGCCCGAAGAAGC | 60.048 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
5547 | 10105 | 1.898154 | GACAGCCCGAAGAAGCCTA | 59.102 | 57.895 | 0.00 | 0.00 | 0.00 | 3.93 |
5549 | 10107 | 0.905337 | ACAGCCCGAAGAAGCCTAGT | 60.905 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5613 | 10177 | 2.749280 | TACTCCGATGCATGCATAGG | 57.251 | 50.000 | 39.35 | 39.35 | 46.24 | 2.57 |
5677 | 10241 | 1.079819 | CGATCGATCCCGGGGAATG | 60.080 | 63.158 | 23.50 | 15.46 | 34.34 | 2.67 |
5687 | 10251 | 5.425630 | GATCCCGGGGAATGTATGTAATAC | 58.574 | 45.833 | 23.50 | 0.00 | 42.10 | 1.89 |
5710 | 10274 | 9.860898 | ATACAGATTTGGAACTAATCAAAAAGC | 57.139 | 29.630 | 6.29 | 0.00 | 34.62 | 3.51 |
5711 | 10275 | 7.154656 | ACAGATTTGGAACTAATCAAAAAGCC | 58.845 | 34.615 | 6.29 | 0.00 | 34.62 | 4.35 |
5712 | 10276 | 6.591448 | CAGATTTGGAACTAATCAAAAAGCCC | 59.409 | 38.462 | 6.29 | 0.00 | 34.62 | 5.19 |
5713 | 10277 | 5.878406 | TTTGGAACTAATCAAAAAGCCCA | 57.122 | 34.783 | 0.00 | 0.00 | 27.62 | 5.36 |
5715 | 10279 | 5.208463 | TGGAACTAATCAAAAAGCCCAAC | 57.792 | 39.130 | 0.00 | 0.00 | 0.00 | 3.77 |
5716 | 10280 | 4.651503 | TGGAACTAATCAAAAAGCCCAACA | 59.348 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
5717 | 10281 | 5.129485 | TGGAACTAATCAAAAAGCCCAACAA | 59.871 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
5747 | 10311 | 3.067883 | TGAATAGCAGCAAAACACAGCAA | 59.932 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
5760 | 10324 | 2.037251 | ACACAGCAATACGTCTCCTGTT | 59.963 | 45.455 | 0.00 | 0.00 | 34.77 | 3.16 |
6051 | 10636 | 2.163815 | CCTCACCTACATCGTCTTCGTT | 59.836 | 50.000 | 0.00 | 0.00 | 38.33 | 3.85 |
6079 | 10664 | 0.110486 | AAAACCTCCGTGGATGCAGT | 59.890 | 50.000 | 0.00 | 0.00 | 39.71 | 4.40 |
6289 | 10883 | 4.378774 | CAAAAATCCACATGGTTGAAGCA | 58.621 | 39.130 | 0.00 | 0.00 | 36.34 | 3.91 |
6384 | 11038 | 5.058149 | TCACGCATACAATTGAAGCATTT | 57.942 | 34.783 | 13.59 | 0.00 | 0.00 | 2.32 |
6385 | 11039 | 5.468592 | TCACGCATACAATTGAAGCATTTT | 58.531 | 33.333 | 13.59 | 0.00 | 0.00 | 1.82 |
6426 | 11080 | 8.268850 | ACTTTTCTGATTTGCGTATTGTCTAT | 57.731 | 30.769 | 0.00 | 0.00 | 0.00 | 1.98 |
6446 | 11100 | 9.587772 | TGTCTATTTGTAGCTTTCTATCTCAAC | 57.412 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
6555 | 11209 | 0.041576 | GTGTCGTTTCGGTTGAAGCC | 60.042 | 55.000 | 0.00 | 0.00 | 35.06 | 4.35 |
6616 | 11271 | 4.794648 | TTTCCCCGATGGCGCTGG | 62.795 | 66.667 | 7.64 | 4.33 | 35.83 | 4.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.249699 | TATACGCTGGATTGCACGGG | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1 | 2 | 1.139989 | CTATACGCTGGATTGCACGG | 58.860 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
51 | 52 | 1.185618 | TGCTAGAGTTGCGGTGAGGT | 61.186 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
55 | 56 | 3.041874 | CTCTGCTAGAGTTGCGGTG | 57.958 | 57.895 | 0.00 | 0.00 | 37.57 | 4.94 |
88 | 89 | 7.288852 | AGGCGCATTCTATATGTATCCTAGAAT | 59.711 | 37.037 | 10.83 | 0.00 | 40.90 | 2.40 |
89 | 90 | 6.607600 | AGGCGCATTCTATATGTATCCTAGAA | 59.392 | 38.462 | 10.83 | 0.00 | 36.30 | 2.10 |
91 | 92 | 6.039829 | TGAGGCGCATTCTATATGTATCCTAG | 59.960 | 42.308 | 10.83 | 0.00 | 0.00 | 3.02 |
92 | 93 | 5.891551 | TGAGGCGCATTCTATATGTATCCTA | 59.108 | 40.000 | 10.83 | 0.00 | 0.00 | 2.94 |
93 | 94 | 4.711846 | TGAGGCGCATTCTATATGTATCCT | 59.288 | 41.667 | 10.83 | 0.00 | 0.00 | 3.24 |
94 | 95 | 5.011090 | TGAGGCGCATTCTATATGTATCC | 57.989 | 43.478 | 10.83 | 0.00 | 0.00 | 2.59 |
102 | 197 | 8.432013 | TCCATAATATTATGAGGCGCATTCTAT | 58.568 | 33.333 | 29.23 | 4.44 | 42.38 | 1.98 |
104 | 199 | 6.540189 | GTCCATAATATTATGAGGCGCATTCT | 59.460 | 38.462 | 29.23 | 0.00 | 42.38 | 2.40 |
108 | 203 | 5.159273 | TGTCCATAATATTATGAGGCGCA | 57.841 | 39.130 | 29.23 | 18.58 | 42.38 | 6.09 |
109 | 204 | 6.094048 | ACAATGTCCATAATATTATGAGGCGC | 59.906 | 38.462 | 29.23 | 16.87 | 42.38 | 6.53 |
124 | 219 | 0.802494 | GCCGTTTCGACAATGTCCAT | 59.198 | 50.000 | 7.91 | 0.00 | 0.00 | 3.41 |
129 | 224 | 1.154225 | GGCTGCCGTTTCGACAATG | 60.154 | 57.895 | 1.35 | 0.00 | 0.00 | 2.82 |
141 | 236 | 2.208326 | CGGTCAAATTAATGGCTGCC | 57.792 | 50.000 | 12.87 | 12.87 | 0.00 | 4.85 |
144 | 239 | 2.722094 | TGAGCGGTCAAATTAATGGCT | 58.278 | 42.857 | 16.20 | 0.00 | 0.00 | 4.75 |
147 | 242 | 7.760131 | ATTGAAATGAGCGGTCAAATTAATG | 57.240 | 32.000 | 22.64 | 0.00 | 35.88 | 1.90 |
155 | 250 | 4.844998 | TTTGAATTGAAATGAGCGGTCA | 57.155 | 36.364 | 21.02 | 21.02 | 37.02 | 4.02 |
159 | 254 | 3.853103 | TGCGATTTGAATTGAAATGAGCG | 59.147 | 39.130 | 7.65 | 6.60 | 32.45 | 5.03 |
191 | 286 | 7.556275 | ACCATATTGCCCGATCGATAAAATAAT | 59.444 | 33.333 | 18.66 | 9.28 | 0.00 | 1.28 |
197 | 292 | 3.595173 | CACCATATTGCCCGATCGATAA | 58.405 | 45.455 | 18.66 | 8.83 | 0.00 | 1.75 |
223 | 319 | 4.084328 | GGTATAATTAGAGCAACTGCAGCG | 60.084 | 45.833 | 15.27 | 6.49 | 45.16 | 5.18 |
227 | 323 | 5.047847 | TCGTGGTATAATTAGAGCAACTGC | 58.952 | 41.667 | 13.15 | 1.31 | 42.49 | 4.40 |
228 | 324 | 7.534085 | TTTCGTGGTATAATTAGAGCAACTG | 57.466 | 36.000 | 13.15 | 7.19 | 0.00 | 3.16 |
247 | 343 | 2.431057 | AGAGACATTAGCCCGATTTCGT | 59.569 | 45.455 | 0.00 | 0.00 | 37.74 | 3.85 |
248 | 344 | 3.053455 | GAGAGACATTAGCCCGATTTCG | 58.947 | 50.000 | 0.00 | 0.00 | 39.44 | 3.46 |
249 | 345 | 4.329462 | AGAGAGACATTAGCCCGATTTC | 57.671 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
251 | 347 | 4.162320 | TGAAAGAGAGACATTAGCCCGATT | 59.838 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
253 | 349 | 3.096852 | TGAAAGAGAGACATTAGCCCGA | 58.903 | 45.455 | 0.00 | 0.00 | 0.00 | 5.14 |
254 | 350 | 3.452474 | CTGAAAGAGAGACATTAGCCCG | 58.548 | 50.000 | 0.00 | 0.00 | 34.07 | 6.13 |
255 | 351 | 3.202097 | GCTGAAAGAGAGACATTAGCCC | 58.798 | 50.000 | 0.00 | 0.00 | 34.07 | 5.19 |
256 | 352 | 2.863137 | CGCTGAAAGAGAGACATTAGCC | 59.137 | 50.000 | 0.00 | 0.00 | 34.81 | 3.93 |
257 | 353 | 3.516615 | ACGCTGAAAGAGAGACATTAGC | 58.483 | 45.455 | 0.00 | 0.00 | 37.13 | 3.09 |
258 | 354 | 4.109050 | GGACGCTGAAAGAGAGACATTAG | 58.891 | 47.826 | 0.00 | 0.00 | 37.13 | 1.73 |
260 | 356 | 2.564947 | AGGACGCTGAAAGAGAGACATT | 59.435 | 45.455 | 0.00 | 0.00 | 37.13 | 2.71 |
262 | 358 | 1.542030 | GAGGACGCTGAAAGAGAGACA | 59.458 | 52.381 | 0.00 | 0.00 | 37.13 | 3.41 |
263 | 359 | 1.816224 | AGAGGACGCTGAAAGAGAGAC | 59.184 | 52.381 | 0.00 | 0.00 | 37.13 | 3.36 |
264 | 360 | 2.088423 | GAGAGGACGCTGAAAGAGAGA | 58.912 | 52.381 | 0.00 | 0.00 | 37.13 | 3.10 |
265 | 361 | 2.091541 | AGAGAGGACGCTGAAAGAGAG | 58.908 | 52.381 | 0.00 | 0.00 | 37.13 | 3.20 |
266 | 362 | 2.088423 | GAGAGAGGACGCTGAAAGAGA | 58.912 | 52.381 | 0.00 | 0.00 | 37.13 | 3.10 |
267 | 363 | 2.091541 | AGAGAGAGGACGCTGAAAGAG | 58.908 | 52.381 | 0.00 | 0.00 | 40.74 | 2.85 |
268 | 364 | 2.208132 | AGAGAGAGGACGCTGAAAGA | 57.792 | 50.000 | 0.00 | 0.00 | 34.07 | 2.52 |
269 | 365 | 5.240623 | ACATATAGAGAGAGGACGCTGAAAG | 59.759 | 44.000 | 0.00 | 0.00 | 0.00 | 2.62 |
270 | 366 | 5.133941 | ACATATAGAGAGAGGACGCTGAAA | 58.866 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
271 | 367 | 4.720046 | ACATATAGAGAGAGGACGCTGAA | 58.280 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
272 | 368 | 4.359434 | ACATATAGAGAGAGGACGCTGA | 57.641 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
273 | 369 | 4.094294 | GCTACATATAGAGAGAGGACGCTG | 59.906 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
274 | 370 | 4.019681 | AGCTACATATAGAGAGAGGACGCT | 60.020 | 45.833 | 0.00 | 0.00 | 0.00 | 5.07 |
275 | 371 | 4.258543 | AGCTACATATAGAGAGAGGACGC | 58.741 | 47.826 | 0.00 | 0.00 | 0.00 | 5.19 |
276 | 372 | 7.908827 | TTTAGCTACATATAGAGAGAGGACG | 57.091 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
288 | 384 | 9.815306 | TCTCTCCTCTGTATTTTAGCTACATAT | 57.185 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
289 | 385 | 9.290988 | CTCTCTCCTCTGTATTTTAGCTACATA | 57.709 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
290 | 386 | 7.255801 | GCTCTCTCCTCTGTATTTTAGCTACAT | 60.256 | 40.741 | 0.00 | 0.00 | 0.00 | 2.29 |
291 | 387 | 6.039941 | GCTCTCTCCTCTGTATTTTAGCTACA | 59.960 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
292 | 388 | 6.443792 | GCTCTCTCCTCTGTATTTTAGCTAC | 58.556 | 44.000 | 0.00 | 0.00 | 0.00 | 3.58 |
293 | 389 | 5.536916 | GGCTCTCTCCTCTGTATTTTAGCTA | 59.463 | 44.000 | 0.00 | 0.00 | 0.00 | 3.32 |
294 | 390 | 4.343814 | GGCTCTCTCCTCTGTATTTTAGCT | 59.656 | 45.833 | 0.00 | 0.00 | 0.00 | 3.32 |
295 | 391 | 4.343814 | AGGCTCTCTCCTCTGTATTTTAGC | 59.656 | 45.833 | 0.00 | 0.00 | 0.00 | 3.09 |
296 | 392 | 6.293735 | CGTAGGCTCTCTCCTCTGTATTTTAG | 60.294 | 46.154 | 0.00 | 0.00 | 37.66 | 1.85 |
297 | 393 | 5.531659 | CGTAGGCTCTCTCCTCTGTATTTTA | 59.468 | 44.000 | 0.00 | 0.00 | 37.66 | 1.52 |
298 | 394 | 4.339814 | CGTAGGCTCTCTCCTCTGTATTTT | 59.660 | 45.833 | 0.00 | 0.00 | 37.66 | 1.82 |
299 | 395 | 3.886505 | CGTAGGCTCTCTCCTCTGTATTT | 59.113 | 47.826 | 0.00 | 0.00 | 37.66 | 1.40 |
300 | 396 | 3.482436 | CGTAGGCTCTCTCCTCTGTATT | 58.518 | 50.000 | 0.00 | 0.00 | 37.66 | 1.89 |
301 | 397 | 2.224670 | CCGTAGGCTCTCTCCTCTGTAT | 60.225 | 54.545 | 0.00 | 0.00 | 46.14 | 2.29 |
302 | 398 | 1.141254 | CCGTAGGCTCTCTCCTCTGTA | 59.859 | 57.143 | 0.00 | 0.00 | 46.14 | 2.74 |
303 | 399 | 0.106918 | CCGTAGGCTCTCTCCTCTGT | 60.107 | 60.000 | 0.00 | 0.00 | 46.14 | 3.41 |
304 | 400 | 2.714259 | CCGTAGGCTCTCTCCTCTG | 58.286 | 63.158 | 0.00 | 0.00 | 46.14 | 3.35 |
317 | 413 | 2.034305 | CCTTATCGACCCTCAACCGTAG | 59.966 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
318 | 414 | 2.026641 | CCTTATCGACCCTCAACCGTA | 58.973 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
319 | 415 | 0.822164 | CCTTATCGACCCTCAACCGT | 59.178 | 55.000 | 0.00 | 0.00 | 0.00 | 4.83 |
320 | 416 | 0.822164 | ACCTTATCGACCCTCAACCG | 59.178 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
321 | 417 | 3.345508 | AAACCTTATCGACCCTCAACC | 57.654 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
322 | 418 | 5.353400 | CCTAAAAACCTTATCGACCCTCAAC | 59.647 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
323 | 419 | 5.248934 | TCCTAAAAACCTTATCGACCCTCAA | 59.751 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
324 | 420 | 4.778958 | TCCTAAAAACCTTATCGACCCTCA | 59.221 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
325 | 421 | 5.349061 | TCCTAAAAACCTTATCGACCCTC | 57.651 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
326 | 422 | 4.383880 | GCTCCTAAAAACCTTATCGACCCT | 60.384 | 45.833 | 0.00 | 0.00 | 0.00 | 4.34 |
327 | 423 | 3.875727 | GCTCCTAAAAACCTTATCGACCC | 59.124 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
328 | 424 | 4.510571 | TGCTCCTAAAAACCTTATCGACC | 58.489 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
329 | 425 | 6.679327 | AATGCTCCTAAAAACCTTATCGAC | 57.321 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
330 | 426 | 6.882140 | TGAAATGCTCCTAAAAACCTTATCGA | 59.118 | 34.615 | 0.00 | 0.00 | 0.00 | 3.59 |
331 | 427 | 7.083875 | TGAAATGCTCCTAAAAACCTTATCG | 57.916 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
332 | 428 | 9.521503 | GAATGAAATGCTCCTAAAAACCTTATC | 57.478 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
333 | 429 | 9.034800 | TGAATGAAATGCTCCTAAAAACCTTAT | 57.965 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
334 | 430 | 8.415950 | TGAATGAAATGCTCCTAAAAACCTTA | 57.584 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
335 | 431 | 7.301868 | TGAATGAAATGCTCCTAAAAACCTT | 57.698 | 32.000 | 0.00 | 0.00 | 0.00 | 3.50 |
336 | 432 | 6.573094 | GCTGAATGAAATGCTCCTAAAAACCT | 60.573 | 38.462 | 0.00 | 0.00 | 0.00 | 3.50 |
337 | 433 | 5.578336 | GCTGAATGAAATGCTCCTAAAAACC | 59.422 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
338 | 434 | 5.287035 | CGCTGAATGAAATGCTCCTAAAAAC | 59.713 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
339 | 435 | 5.401550 | CGCTGAATGAAATGCTCCTAAAAA | 58.598 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
340 | 436 | 4.675146 | GCGCTGAATGAAATGCTCCTAAAA | 60.675 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
341 | 437 | 3.181497 | GCGCTGAATGAAATGCTCCTAAA | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
342 | 438 | 2.355756 | GCGCTGAATGAAATGCTCCTAA | 59.644 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
343 | 439 | 1.942657 | GCGCTGAATGAAATGCTCCTA | 59.057 | 47.619 | 0.00 | 0.00 | 0.00 | 2.94 |
344 | 440 | 0.737219 | GCGCTGAATGAAATGCTCCT | 59.263 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
345 | 441 | 0.590732 | CGCGCTGAATGAAATGCTCC | 60.591 | 55.000 | 5.56 | 0.00 | 0.00 | 4.70 |
346 | 442 | 0.374758 | TCGCGCTGAATGAAATGCTC | 59.625 | 50.000 | 5.56 | 0.00 | 0.00 | 4.26 |
347 | 443 | 0.097674 | GTCGCGCTGAATGAAATGCT | 59.902 | 50.000 | 5.56 | 0.00 | 0.00 | 3.79 |
348 | 444 | 0.097674 | AGTCGCGCTGAATGAAATGC | 59.902 | 50.000 | 5.56 | 0.00 | 0.00 | 3.56 |
349 | 445 | 1.129251 | ACAGTCGCGCTGAATGAAATG | 59.871 | 47.619 | 28.70 | 11.01 | 45.36 | 2.32 |
350 | 446 | 1.442769 | ACAGTCGCGCTGAATGAAAT | 58.557 | 45.000 | 28.70 | 9.89 | 45.36 | 2.17 |
351 | 447 | 1.069973 | CAACAGTCGCGCTGAATGAAA | 60.070 | 47.619 | 28.70 | 0.00 | 45.36 | 2.69 |
352 | 448 | 0.512518 | CAACAGTCGCGCTGAATGAA | 59.487 | 50.000 | 28.70 | 0.00 | 45.36 | 2.57 |
353 | 449 | 1.900585 | GCAACAGTCGCGCTGAATGA | 61.901 | 55.000 | 28.70 | 7.21 | 45.36 | 2.57 |
359 | 455 | 0.600255 | ACTTAAGCAACAGTCGCGCT | 60.600 | 50.000 | 5.56 | 0.00 | 37.68 | 5.92 |
360 | 456 | 0.234884 | AACTTAAGCAACAGTCGCGC | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 6.86 |
361 | 457 | 2.033236 | TCAAACTTAAGCAACAGTCGCG | 60.033 | 45.455 | 0.00 | 0.00 | 0.00 | 5.87 |
362 | 458 | 3.002348 | AGTCAAACTTAAGCAACAGTCGC | 59.998 | 43.478 | 1.29 | 0.00 | 0.00 | 5.19 |
363 | 459 | 4.795970 | AGTCAAACTTAAGCAACAGTCG | 57.204 | 40.909 | 1.29 | 0.00 | 0.00 | 4.18 |
364 | 460 | 6.598753 | TGTAGTCAAACTTAAGCAACAGTC | 57.401 | 37.500 | 1.29 | 0.00 | 0.00 | 3.51 |
365 | 461 | 6.073765 | CGATGTAGTCAAACTTAAGCAACAGT | 60.074 | 38.462 | 1.29 | 0.00 | 0.00 | 3.55 |
366 | 462 | 6.073765 | ACGATGTAGTCAAACTTAAGCAACAG | 60.074 | 38.462 | 1.29 | 0.00 | 0.00 | 3.16 |
367 | 463 | 5.756347 | ACGATGTAGTCAAACTTAAGCAACA | 59.244 | 36.000 | 1.29 | 0.00 | 0.00 | 3.33 |
368 | 464 | 6.224420 | ACGATGTAGTCAAACTTAAGCAAC | 57.776 | 37.500 | 1.29 | 0.00 | 0.00 | 4.17 |
369 | 465 | 5.118050 | CGACGATGTAGTCAAACTTAAGCAA | 59.882 | 40.000 | 1.29 | 0.00 | 40.98 | 3.91 |
370 | 466 | 4.619760 | CGACGATGTAGTCAAACTTAAGCA | 59.380 | 41.667 | 1.29 | 0.00 | 40.98 | 3.91 |
371 | 467 | 4.855388 | TCGACGATGTAGTCAAACTTAAGC | 59.145 | 41.667 | 1.29 | 0.00 | 40.98 | 3.09 |
372 | 468 | 6.912815 | CATCGACGATGTAGTCAAACTTAAG | 58.087 | 40.000 | 26.15 | 0.00 | 40.98 | 1.85 |
373 | 469 | 6.864560 | CATCGACGATGTAGTCAAACTTAA | 57.135 | 37.500 | 26.15 | 0.00 | 40.98 | 1.85 |
386 | 482 | 0.025001 | GCGGACAAACATCGACGATG | 59.975 | 55.000 | 31.05 | 31.05 | 44.71 | 3.84 |
390 | 486 | 0.096976 | CCATGCGGACAAACATCGAC | 59.903 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
392 | 488 | 0.521291 | AACCATGCGGACAAACATCG | 59.479 | 50.000 | 0.00 | 0.00 | 35.59 | 3.84 |
395 | 491 | 0.466372 | TGGAACCATGCGGACAAACA | 60.466 | 50.000 | 0.00 | 0.00 | 35.59 | 2.83 |
399 | 495 | 0.605319 | GAAGTGGAACCATGCGGACA | 60.605 | 55.000 | 0.00 | 0.00 | 37.80 | 4.02 |
409 | 507 | 4.700692 | GGGTCATAAAGGAAGAAGTGGAAC | 59.299 | 45.833 | 0.00 | 0.00 | 0.00 | 3.62 |
432 | 530 | 2.026915 | TGGTGAAGATGAGGTGGTCATG | 60.027 | 50.000 | 0.00 | 0.00 | 46.64 | 3.07 |
434 | 532 | 1.347707 | GTGGTGAAGATGAGGTGGTCA | 59.652 | 52.381 | 0.00 | 0.00 | 40.38 | 4.02 |
435 | 533 | 1.339151 | GGTGGTGAAGATGAGGTGGTC | 60.339 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
440 | 538 | 2.020694 | GCCATGGTGGTGAAGATGAGG | 61.021 | 57.143 | 14.67 | 0.00 | 40.46 | 3.86 |
465 | 563 | 0.171007 | CCGATGCAACAACATGGGTC | 59.829 | 55.000 | 0.00 | 0.00 | 40.11 | 4.46 |
466 | 564 | 0.251121 | TCCGATGCAACAACATGGGT | 60.251 | 50.000 | 0.00 | 0.00 | 44.01 | 4.51 |
467 | 565 | 0.452987 | CTCCGATGCAACAACATGGG | 59.547 | 55.000 | 0.00 | 0.00 | 44.73 | 4.00 |
468 | 566 | 1.167851 | ACTCCGATGCAACAACATGG | 58.832 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
469 | 567 | 2.725759 | CGAACTCCGATGCAACAACATG | 60.726 | 50.000 | 0.00 | 0.00 | 41.76 | 3.21 |
490 | 588 | 4.379082 | GGTTCACAACATACGAATTCACCC | 60.379 | 45.833 | 6.22 | 0.00 | 0.00 | 4.61 |
499 | 597 | 4.272504 | ACAGACAAAGGTTCACAACATACG | 59.727 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
500 | 598 | 5.751243 | ACAGACAAAGGTTCACAACATAC | 57.249 | 39.130 | 0.00 | 0.00 | 0.00 | 2.39 |
507 | 605 | 1.748493 | TGCCAACAGACAAAGGTTCAC | 59.252 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
571 | 676 | 3.799232 | GCAAACCGTGTAGACAGAGACTT | 60.799 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
627 | 732 | 9.906660 | TCACGCAGTTTTTGATTAATCTTTAAT | 57.093 | 25.926 | 16.24 | 0.00 | 41.61 | 1.40 |
632 | 737 | 8.345565 | GGATATCACGCAGTTTTTGATTAATCT | 58.654 | 33.333 | 16.24 | 0.00 | 41.61 | 2.40 |
633 | 738 | 7.321271 | CGGATATCACGCAGTTTTTGATTAATC | 59.679 | 37.037 | 8.60 | 8.60 | 41.61 | 1.75 |
635 | 740 | 6.314152 | TCGGATATCACGCAGTTTTTGATTAA | 59.686 | 34.615 | 4.83 | 0.00 | 41.61 | 1.40 |
650 | 760 | 4.674362 | GCCAGGTTTTTGTTCGGATATCAC | 60.674 | 45.833 | 4.83 | 0.00 | 0.00 | 3.06 |
666 | 776 | 4.082125 | CTCTCTTAAAATGTGGCCAGGTT | 58.918 | 43.478 | 5.11 | 0.00 | 0.00 | 3.50 |
671 | 781 | 3.758554 | TGCTTCTCTCTTAAAATGTGGCC | 59.241 | 43.478 | 0.00 | 0.00 | 0.00 | 5.36 |
672 | 782 | 5.376854 | TTGCTTCTCTCTTAAAATGTGGC | 57.623 | 39.130 | 0.00 | 0.00 | 0.00 | 5.01 |
675 | 785 | 6.207614 | GGGTCTTTGCTTCTCTCTTAAAATGT | 59.792 | 38.462 | 0.00 | 0.00 | 0.00 | 2.71 |
681 | 792 | 4.421131 | AGAGGGTCTTTGCTTCTCTCTTA | 58.579 | 43.478 | 0.00 | 0.00 | 29.81 | 2.10 |
709 | 823 | 2.620585 | GAGGCAAATCATTGAGGTAGCC | 59.379 | 50.000 | 11.90 | 11.90 | 38.94 | 3.93 |
814 | 946 | 3.777465 | TTCATACAGTACAGAGACGGC | 57.223 | 47.619 | 0.00 | 0.00 | 0.00 | 5.68 |
848 | 980 | 1.476845 | TAGTGAAACGGGGCAGCTGA | 61.477 | 55.000 | 20.43 | 0.00 | 45.86 | 4.26 |
850 | 982 | 1.003718 | GTAGTGAAACGGGGCAGCT | 60.004 | 57.895 | 0.00 | 0.00 | 45.86 | 4.24 |
852 | 984 | 0.320374 | TCAGTAGTGAAACGGGGCAG | 59.680 | 55.000 | 0.00 | 0.00 | 45.86 | 4.85 |
853 | 985 | 0.320374 | CTCAGTAGTGAAACGGGGCA | 59.680 | 55.000 | 1.11 | 0.00 | 45.86 | 5.36 |
869 | 1001 | 4.013050 | TCTCGCTCAATCTTTCTCTCTCA | 58.987 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
883 | 1015 | 4.950050 | AGTTTCTCTTTCTTTCTCGCTCA | 58.050 | 39.130 | 0.00 | 0.00 | 0.00 | 4.26 |
887 | 1045 | 8.896826 | GCAAATTAAGTTTCTCTTTCTTTCTCG | 58.103 | 33.333 | 0.00 | 0.00 | 37.56 | 4.04 |
889 | 1047 | 9.958234 | GAGCAAATTAAGTTTCTCTTTCTTTCT | 57.042 | 29.630 | 7.86 | 0.00 | 37.56 | 2.52 |
890 | 1048 | 9.186323 | GGAGCAAATTAAGTTTCTCTTTCTTTC | 57.814 | 33.333 | 13.51 | 0.00 | 37.56 | 2.62 |
891 | 1049 | 8.144478 | GGGAGCAAATTAAGTTTCTCTTTCTTT | 58.856 | 33.333 | 13.51 | 0.00 | 37.56 | 2.52 |
892 | 1050 | 7.507277 | AGGGAGCAAATTAAGTTTCTCTTTCTT | 59.493 | 33.333 | 13.51 | 0.00 | 37.56 | 2.52 |
921 | 1079 | 3.959293 | TCAGAGAGGTATACGGACACAA | 58.041 | 45.455 | 0.00 | 0.00 | 0.00 | 3.33 |
923 | 1081 | 4.978083 | TTTCAGAGAGGTATACGGACAC | 57.022 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
924 | 1082 | 5.014858 | ACTTTTCAGAGAGGTATACGGACA | 58.985 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
925 | 1083 | 5.579564 | ACTTTTCAGAGAGGTATACGGAC | 57.420 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
926 | 1084 | 7.288560 | AGATACTTTTCAGAGAGGTATACGGA | 58.711 | 38.462 | 0.00 | 0.00 | 0.00 | 4.69 |
927 | 1085 | 7.513371 | AGATACTTTTCAGAGAGGTATACGG | 57.487 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
928 | 1086 | 9.239002 | CAAAGATACTTTTCAGAGAGGTATACG | 57.761 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
929 | 1087 | 9.535878 | CCAAAGATACTTTTCAGAGAGGTATAC | 57.464 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
930 | 1088 | 9.488762 | TCCAAAGATACTTTTCAGAGAGGTATA | 57.511 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
931 | 1089 | 8.380742 | TCCAAAGATACTTTTCAGAGAGGTAT | 57.619 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
932 | 1090 | 7.792364 | TCCAAAGATACTTTTCAGAGAGGTA | 57.208 | 36.000 | 0.00 | 0.00 | 0.00 | 3.08 |
933 | 1091 | 6.688073 | TCCAAAGATACTTTTCAGAGAGGT | 57.312 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
934 | 1092 | 6.093357 | GCTTCCAAAGATACTTTTCAGAGAGG | 59.907 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
967 | 1125 | 1.291033 | AGGAGATGCCGGCCCTATATA | 59.709 | 52.381 | 26.77 | 2.60 | 43.43 | 0.86 |
971 | 1129 | 2.524394 | GAGGAGATGCCGGCCCTA | 60.524 | 66.667 | 26.77 | 5.45 | 43.43 | 3.53 |
978 | 1165 | 2.336484 | GAAGCAGGGGAGGAGATGCC | 62.336 | 65.000 | 0.00 | 0.00 | 39.51 | 4.40 |
993 | 1180 | 2.669569 | TGGCGCTTGTGAGGAAGC | 60.670 | 61.111 | 7.64 | 0.00 | 44.21 | 3.86 |
994 | 1181 | 2.328099 | GGTGGCGCTTGTGAGGAAG | 61.328 | 63.158 | 7.64 | 0.00 | 0.00 | 3.46 |
995 | 1182 | 2.281484 | GGTGGCGCTTGTGAGGAA | 60.281 | 61.111 | 7.64 | 0.00 | 0.00 | 3.36 |
996 | 1183 | 3.555324 | TGGTGGCGCTTGTGAGGA | 61.555 | 61.111 | 7.64 | 0.00 | 0.00 | 3.71 |
1002 | 1189 | 2.981560 | GATGGTGTGGTGGCGCTTG | 61.982 | 63.158 | 7.64 | 0.00 | 0.00 | 4.01 |
1007 | 1194 | 1.134491 | GTAGGTAGATGGTGTGGTGGC | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 5.01 |
1246 | 1456 | 4.442706 | AGGCAAAATCACCTATGACGTAG | 58.557 | 43.478 | 0.00 | 0.00 | 37.79 | 3.51 |
1265 | 1475 | 1.610554 | ATGTGCATGCTGGGAAAGGC | 61.611 | 55.000 | 20.33 | 0.00 | 0.00 | 4.35 |
1274 | 1513 | 1.162698 | GAGTGTGACATGTGCATGCT | 58.837 | 50.000 | 20.33 | 0.00 | 42.39 | 3.79 |
1294 | 1533 | 3.122297 | CGAGAGATGGAAGACAAGATGC | 58.878 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1301 | 1540 | 3.211045 | AGTAGAGCGAGAGATGGAAGAC | 58.789 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1320 | 1560 | 5.772672 | CAGGATCTAATGGCTACTACTGAGT | 59.227 | 44.000 | 0.00 | 0.00 | 39.92 | 3.41 |
1337 | 1585 | 1.749634 | GCAGCAAATTCAGCAGGATCT | 59.250 | 47.619 | 5.74 | 0.00 | 0.00 | 2.75 |
1356 | 1604 | 4.535116 | CACAAGAAGAAGAAGAAAGCAGC | 58.465 | 43.478 | 0.00 | 0.00 | 0.00 | 5.25 |
1360 | 1608 | 4.023365 | CCAGGCACAAGAAGAAGAAGAAAG | 60.023 | 45.833 | 0.00 | 0.00 | 0.00 | 2.62 |
1402 | 1650 | 2.105006 | ATCAGACTGATGGTGTGCAC | 57.895 | 50.000 | 17.27 | 10.75 | 38.84 | 4.57 |
1433 | 1681 | 3.449018 | TGCCTTTACTGTTTGCCTTTTCA | 59.551 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
1578 | 1834 | 1.401199 | GGCAAAGCAAAGCAAAGCAAA | 59.599 | 42.857 | 0.00 | 0.00 | 0.00 | 3.68 |
1579 | 1835 | 1.015868 | GGCAAAGCAAAGCAAAGCAA | 58.984 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1581 | 1837 | 0.584876 | CAGGCAAAGCAAAGCAAAGC | 59.415 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1606 | 1868 | 0.034186 | GGGATTGTGGGCACTCATCA | 60.034 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1623 | 1885 | 3.243975 | GCATGGGAGCTGATTTTAATGGG | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
1628 | 1890 | 2.824689 | TGGCATGGGAGCTGATTTTA | 57.175 | 45.000 | 0.00 | 0.00 | 34.17 | 1.52 |
1634 | 1896 | 1.379443 | ACACATGGCATGGGAGCTG | 60.379 | 57.895 | 34.91 | 22.46 | 37.07 | 4.24 |
1731 | 2158 | 5.579511 | ACTGAAATTTTACGCGTACATAGCT | 59.420 | 36.000 | 20.44 | 1.85 | 0.00 | 3.32 |
1735 | 2162 | 4.453136 | ACCACTGAAATTTTACGCGTACAT | 59.547 | 37.500 | 20.44 | 11.38 | 0.00 | 2.29 |
1737 | 2164 | 4.394099 | ACCACTGAAATTTTACGCGTAC | 57.606 | 40.909 | 20.44 | 6.93 | 0.00 | 3.67 |
1754 | 2181 | 3.972502 | GTGTGCGTGAAAAGATTTACCAC | 59.027 | 43.478 | 0.00 | 0.00 | 32.22 | 4.16 |
1756 | 2183 | 4.217754 | TGTGTGCGTGAAAAGATTTACC | 57.782 | 40.909 | 0.00 | 0.00 | 0.00 | 2.85 |
1773 | 2200 | 3.610114 | GCACATGATTTCGCTCTTTGTGT | 60.610 | 43.478 | 0.00 | 0.00 | 34.88 | 3.72 |
1780 | 2207 | 0.443869 | ACACGCACATGATTTCGCTC | 59.556 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1781 | 2208 | 1.720805 | TACACGCACATGATTTCGCT | 58.279 | 45.000 | 0.00 | 0.00 | 0.00 | 4.93 |
1783 | 2210 | 5.006261 | TCCTATTTACACGCACATGATTTCG | 59.994 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1788 | 2215 | 4.765273 | ACATCCTATTTACACGCACATGA | 58.235 | 39.130 | 0.00 | 0.00 | 0.00 | 3.07 |
1814 | 2241 | 6.915300 | GGAGATGCTCTAATACATAGTATGCG | 59.085 | 42.308 | 10.16 | 0.00 | 33.08 | 4.73 |
1823 | 2250 | 4.443457 | GGCTGTTGGAGATGCTCTAATACA | 60.443 | 45.833 | 0.00 | 0.00 | 33.81 | 2.29 |
1824 | 2251 | 4.061596 | GGCTGTTGGAGATGCTCTAATAC | 58.938 | 47.826 | 0.00 | 0.00 | 33.81 | 1.89 |
1825 | 2252 | 3.243873 | CGGCTGTTGGAGATGCTCTAATA | 60.244 | 47.826 | 0.00 | 0.00 | 33.81 | 0.98 |
1826 | 2253 | 2.484417 | CGGCTGTTGGAGATGCTCTAAT | 60.484 | 50.000 | 0.00 | 0.00 | 33.81 | 1.73 |
2997 | 5373 | 0.811219 | CCAACAGCTGCGCTATAGCA | 60.811 | 55.000 | 23.99 | 6.02 | 45.96 | 3.49 |
3039 | 5415 | 1.552792 | AGCTACACAGGAAAGAGAGGC | 59.447 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
3040 | 5416 | 5.407407 | TTTAGCTACACAGGAAAGAGAGG | 57.593 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
3041 | 5417 | 6.459923 | ACTTTTAGCTACACAGGAAAGAGAG | 58.540 | 40.000 | 16.51 | 0.00 | 0.00 | 3.20 |
3083 | 5459 | 6.925718 | GCTGGTAAATTCTGAAGCTTTCTTTT | 59.074 | 34.615 | 0.00 | 0.16 | 31.48 | 2.27 |
3087 | 5463 | 5.376854 | TGCTGGTAAATTCTGAAGCTTTC | 57.623 | 39.130 | 0.00 | 0.00 | 0.00 | 2.62 |
3088 | 5464 | 5.789643 | TTGCTGGTAAATTCTGAAGCTTT | 57.210 | 34.783 | 0.00 | 0.00 | 0.00 | 3.51 |
3090 | 5466 | 5.789643 | TTTTGCTGGTAAATTCTGAAGCT | 57.210 | 34.783 | 0.00 | 0.00 | 0.00 | 3.74 |
3303 | 5705 | 5.254115 | AGCGCTAGGAAAAATAAAGAAGGT | 58.746 | 37.500 | 8.99 | 0.00 | 0.00 | 3.50 |
3345 | 5750 | 6.766467 | AGGTTCTTGGACTACTACACAAAAAG | 59.234 | 38.462 | 0.00 | 0.00 | 0.00 | 2.27 |
3346 | 5751 | 6.655930 | AGGTTCTTGGACTACTACACAAAAA | 58.344 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3350 | 5755 | 5.881923 | AAAGGTTCTTGGACTACTACACA | 57.118 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
3351 | 5756 | 8.146412 | TCTTTAAAGGTTCTTGGACTACTACAC | 58.854 | 37.037 | 15.13 | 0.00 | 0.00 | 2.90 |
3355 | 5760 | 8.050930 | TGTTTCTTTAAAGGTTCTTGGACTACT | 58.949 | 33.333 | 15.13 | 0.00 | 0.00 | 2.57 |
3365 | 5770 | 8.791605 | CACGTAAAGTTGTTTCTTTAAAGGTTC | 58.208 | 33.333 | 15.13 | 6.46 | 40.20 | 3.62 |
3366 | 5771 | 7.756272 | CCACGTAAAGTTGTTTCTTTAAAGGTT | 59.244 | 33.333 | 15.13 | 0.99 | 40.20 | 3.50 |
3367 | 5772 | 7.094248 | ACCACGTAAAGTTGTTTCTTTAAAGGT | 60.094 | 33.333 | 15.13 | 0.00 | 40.20 | 3.50 |
3373 | 5778 | 4.701171 | TCCACCACGTAAAGTTGTTTCTTT | 59.299 | 37.500 | 0.00 | 0.00 | 40.22 | 2.52 |
3374 | 5779 | 4.263435 | TCCACCACGTAAAGTTGTTTCTT | 58.737 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
3375 | 5780 | 3.876341 | TCCACCACGTAAAGTTGTTTCT | 58.124 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
3376 | 5781 | 4.619437 | TTCCACCACGTAAAGTTGTTTC | 57.381 | 40.909 | 0.00 | 0.00 | 0.00 | 2.78 |
3377 | 5782 | 5.388408 | TTTTCCACCACGTAAAGTTGTTT | 57.612 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
3380 | 5786 | 7.703197 | AGTTTATTTTTCCACCACGTAAAGTTG | 59.297 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
3398 | 5804 | 7.202093 | CCCCAAAGGAAGAGGAAAAGTTTATTT | 60.202 | 37.037 | 0.00 | 0.00 | 38.24 | 1.40 |
3400 | 5806 | 5.780282 | CCCCAAAGGAAGAGGAAAAGTTTAT | 59.220 | 40.000 | 0.00 | 0.00 | 38.24 | 1.40 |
3403 | 5809 | 3.576861 | CCCCAAAGGAAGAGGAAAAGTT | 58.423 | 45.455 | 0.00 | 0.00 | 38.24 | 2.66 |
3412 | 5818 | 2.091885 | GGTATCATGCCCCAAAGGAAGA | 60.092 | 50.000 | 0.00 | 0.00 | 38.24 | 2.87 |
3419 | 5826 | 1.576368 | AACCCGGTATCATGCCCCAA | 61.576 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
3420 | 5827 | 1.576368 | AAACCCGGTATCATGCCCCA | 61.576 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
3424 | 5831 | 1.065551 | GCTGAAAACCCGGTATCATGC | 59.934 | 52.381 | 0.00 | 8.37 | 0.00 | 4.06 |
3425 | 5832 | 2.643551 | AGCTGAAAACCCGGTATCATG | 58.356 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
3426 | 5833 | 3.366052 | AAGCTGAAAACCCGGTATCAT | 57.634 | 42.857 | 0.00 | 0.00 | 0.00 | 2.45 |
3448 | 5855 | 3.842007 | TTCTGGACGGAGGTTACAAAA | 57.158 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
3450 | 5857 | 4.360951 | AATTTCTGGACGGAGGTTACAA | 57.639 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
3451 | 5858 | 5.012354 | AGTTAATTTCTGGACGGAGGTTACA | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3452 | 5859 | 5.350640 | CAGTTAATTTCTGGACGGAGGTTAC | 59.649 | 44.000 | 0.00 | 0.00 | 0.00 | 2.50 |
3454 | 5861 | 4.202430 | ACAGTTAATTTCTGGACGGAGGTT | 60.202 | 41.667 | 12.64 | 0.00 | 37.25 | 3.50 |
3456 | 5863 | 3.933332 | GACAGTTAATTTCTGGACGGAGG | 59.067 | 47.826 | 12.64 | 0.00 | 37.25 | 4.30 |
3457 | 5864 | 3.612860 | CGACAGTTAATTTCTGGACGGAG | 59.387 | 47.826 | 12.64 | 0.00 | 37.25 | 4.63 |
3458 | 5865 | 3.581755 | CGACAGTTAATTTCTGGACGGA | 58.418 | 45.455 | 12.64 | 0.00 | 37.25 | 4.69 |
3459 | 5866 | 2.093783 | GCGACAGTTAATTTCTGGACGG | 59.906 | 50.000 | 20.22 | 9.04 | 37.34 | 4.79 |
3460 | 5867 | 2.993899 | AGCGACAGTTAATTTCTGGACG | 59.006 | 45.455 | 17.54 | 17.54 | 38.57 | 4.79 |
3463 | 5870 | 5.356882 | TTTCAGCGACAGTTAATTTCTGG | 57.643 | 39.130 | 12.64 | 1.08 | 37.25 | 3.86 |
3464 | 5871 | 5.796935 | CCATTTCAGCGACAGTTAATTTCTG | 59.203 | 40.000 | 8.23 | 8.23 | 38.68 | 3.02 |
3466 | 5873 | 5.095490 | CCCATTTCAGCGACAGTTAATTTC | 58.905 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
3467 | 5874 | 4.522789 | ACCCATTTCAGCGACAGTTAATTT | 59.477 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
3468 | 5875 | 4.079253 | ACCCATTTCAGCGACAGTTAATT | 58.921 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
3469 | 5876 | 3.440173 | CACCCATTTCAGCGACAGTTAAT | 59.560 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
3470 | 5877 | 2.811431 | CACCCATTTCAGCGACAGTTAA | 59.189 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
3471 | 5878 | 2.037902 | TCACCCATTTCAGCGACAGTTA | 59.962 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
3473 | 5880 | 0.396435 | TCACCCATTTCAGCGACAGT | 59.604 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3474 | 5881 | 1.522668 | TTCACCCATTTCAGCGACAG | 58.477 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3475 | 5882 | 2.083774 | GATTCACCCATTTCAGCGACA | 58.916 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
3477 | 5884 | 2.787473 | AGATTCACCCATTTCAGCGA | 57.213 | 45.000 | 0.00 | 0.00 | 0.00 | 4.93 |
3478 | 5885 | 3.557595 | GTCTAGATTCACCCATTTCAGCG | 59.442 | 47.826 | 0.00 | 0.00 | 0.00 | 5.18 |
3479 | 5886 | 3.879892 | GGTCTAGATTCACCCATTTCAGC | 59.120 | 47.826 | 0.00 | 0.00 | 0.00 | 4.26 |
3480 | 5887 | 5.102953 | TGGTCTAGATTCACCCATTTCAG | 57.897 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
3482 | 5889 | 4.752101 | CGATGGTCTAGATTCACCCATTTC | 59.248 | 45.833 | 11.90 | 2.70 | 36.08 | 2.17 |
3483 | 5890 | 4.408921 | TCGATGGTCTAGATTCACCCATTT | 59.591 | 41.667 | 11.90 | 0.00 | 36.08 | 2.32 |
3484 | 5891 | 3.967326 | TCGATGGTCTAGATTCACCCATT | 59.033 | 43.478 | 11.90 | 0.00 | 36.08 | 3.16 |
3486 | 5893 | 2.959030 | CTCGATGGTCTAGATTCACCCA | 59.041 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
3487 | 5894 | 2.959707 | ACTCGATGGTCTAGATTCACCC | 59.040 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3488 | 5895 | 5.769484 | TTACTCGATGGTCTAGATTCACC | 57.231 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
3489 | 5896 | 9.562583 | GATAATTACTCGATGGTCTAGATTCAC | 57.437 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
3490 | 5897 | 9.297037 | TGATAATTACTCGATGGTCTAGATTCA | 57.703 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3494 | 5901 | 9.521841 | AGATTGATAATTACTCGATGGTCTAGA | 57.478 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
3496 | 5903 | 9.914131 | CAAGATTGATAATTACTCGATGGTCTA | 57.086 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
3497 | 5904 | 8.424918 | ACAAGATTGATAATTACTCGATGGTCT | 58.575 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
3498 | 5905 | 8.594881 | ACAAGATTGATAATTACTCGATGGTC | 57.405 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
3499 | 5906 | 7.382488 | CGACAAGATTGATAATTACTCGATGGT | 59.618 | 37.037 | 0.00 | 0.00 | 0.00 | 3.55 |
3500 | 5907 | 7.382488 | ACGACAAGATTGATAATTACTCGATGG | 59.618 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3501 | 5908 | 8.286996 | ACGACAAGATTGATAATTACTCGATG | 57.713 | 34.615 | 0.00 | 0.00 | 0.00 | 3.84 |
3502 | 5909 | 8.135529 | TGACGACAAGATTGATAATTACTCGAT | 58.864 | 33.333 | 0.00 | 0.00 | 0.00 | 3.59 |
3503 | 5910 | 7.431376 | GTGACGACAAGATTGATAATTACTCGA | 59.569 | 37.037 | 0.00 | 0.00 | 0.00 | 4.04 |
3504 | 5911 | 7.220108 | TGTGACGACAAGATTGATAATTACTCG | 59.780 | 37.037 | 0.00 | 0.00 | 0.00 | 4.18 |
3506 | 5913 | 7.492669 | CCTGTGACGACAAGATTGATAATTACT | 59.507 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
3507 | 5914 | 7.491372 | TCCTGTGACGACAAGATTGATAATTAC | 59.509 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
3508 | 5915 | 7.491372 | GTCCTGTGACGACAAGATTGATAATTA | 59.509 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
3510 | 5917 | 5.812642 | GTCCTGTGACGACAAGATTGATAAT | 59.187 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3511 | 5918 | 5.168569 | GTCCTGTGACGACAAGATTGATAA | 58.831 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
3512 | 5919 | 4.744570 | GTCCTGTGACGACAAGATTGATA | 58.255 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
3525 | 5932 | 4.813296 | ATTTTTGAAGTCGTCCTGTGAC | 57.187 | 40.909 | 0.00 | 0.00 | 38.18 | 3.67 |
3526 | 5933 | 6.928979 | TTTATTTTTGAAGTCGTCCTGTGA | 57.071 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
3527 | 5934 | 7.860373 | TGATTTTATTTTTGAAGTCGTCCTGTG | 59.140 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
3528 | 5935 | 7.860872 | GTGATTTTATTTTTGAAGTCGTCCTGT | 59.139 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
3529 | 5936 | 7.059488 | CGTGATTTTATTTTTGAAGTCGTCCTG | 59.941 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
3530 | 5937 | 7.075741 | CGTGATTTTATTTTTGAAGTCGTCCT | 58.924 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
3531 | 5938 | 6.183359 | GCGTGATTTTATTTTTGAAGTCGTCC | 60.183 | 38.462 | 0.00 | 0.00 | 0.00 | 4.79 |
3532 | 5939 | 6.577427 | AGCGTGATTTTATTTTTGAAGTCGTC | 59.423 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
3535 | 5942 | 8.061125 | ACAAGCGTGATTTTATTTTTGAAGTC | 57.939 | 30.769 | 6.65 | 0.00 | 0.00 | 3.01 |
3538 | 5945 | 8.858003 | TGTACAAGCGTGATTTTATTTTTGAA | 57.142 | 26.923 | 6.65 | 0.00 | 0.00 | 2.69 |
3539 | 5946 | 8.132362 | ACTGTACAAGCGTGATTTTATTTTTGA | 58.868 | 29.630 | 6.65 | 0.00 | 0.00 | 2.69 |
3555 | 5962 | 4.489679 | AGCTGCTTTTTACTGTACAAGC | 57.510 | 40.909 | 17.97 | 17.97 | 41.75 | 4.01 |
3582 | 6260 | 8.755028 | TCTTCTTGGCTTAGTGTGTTATATGTA | 58.245 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3585 | 6263 | 8.540388 | TCTTCTTCTTGGCTTAGTGTGTTATAT | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
3633 | 6311 | 8.755028 | TCTTCTTGGCTTAGTGTGTTATATGTA | 58.245 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3637 | 6315 | 7.903145 | TCTTCTTCTTGGCTTAGTGTGTTATA | 58.097 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
3639 | 6317 | 6.169557 | TCTTCTTCTTGGCTTAGTGTGTTA | 57.830 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
3641 | 6319 | 4.689612 | TCTTCTTCTTGGCTTAGTGTGT | 57.310 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
3642 | 6320 | 5.240891 | TGATCTTCTTCTTGGCTTAGTGTG | 58.759 | 41.667 | 0.00 | 0.00 | 0.00 | 3.82 |
3643 | 6321 | 5.012561 | ACTGATCTTCTTCTTGGCTTAGTGT | 59.987 | 40.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3644 | 6322 | 5.486526 | ACTGATCTTCTTCTTGGCTTAGTG | 58.513 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3645 | 6323 | 5.753721 | ACTGATCTTCTTCTTGGCTTAGT | 57.246 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
3646 | 6324 | 6.872920 | ACTACTGATCTTCTTCTTGGCTTAG | 58.127 | 40.000 | 0.00 | 0.00 | 0.00 | 2.18 |
3647 | 6325 | 6.665680 | AGACTACTGATCTTCTTCTTGGCTTA | 59.334 | 38.462 | 0.00 | 0.00 | 0.00 | 3.09 |
3649 | 6327 | 5.022787 | AGACTACTGATCTTCTTCTTGGCT | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 4.75 |
3650 | 6328 | 5.337578 | AGACTACTGATCTTCTTCTTGGC | 57.662 | 43.478 | 0.00 | 0.00 | 0.00 | 4.52 |
3652 | 6330 | 6.027131 | CACGAGACTACTGATCTTCTTCTTG | 58.973 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3653 | 6331 | 5.708230 | ACACGAGACTACTGATCTTCTTCTT | 59.292 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3655 | 6333 | 5.328691 | CACACGAGACTACTGATCTTCTTC | 58.671 | 45.833 | 0.00 | 0.00 | 0.00 | 2.87 |
3657 | 6335 | 3.692101 | CCACACGAGACTACTGATCTTCT | 59.308 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
3658 | 6336 | 3.440872 | ACCACACGAGACTACTGATCTTC | 59.559 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
3659 | 6337 | 3.422796 | ACCACACGAGACTACTGATCTT | 58.577 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
3661 | 6339 | 6.615264 | TTATACCACACGAGACTACTGATC | 57.385 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
3663 | 6341 | 5.356190 | CCTTTATACCACACGAGACTACTGA | 59.644 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3664 | 6342 | 5.356190 | TCCTTTATACCACACGAGACTACTG | 59.644 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3665 | 6343 | 5.503927 | TCCTTTATACCACACGAGACTACT | 58.496 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3666 | 6344 | 5.824904 | TCCTTTATACCACACGAGACTAC | 57.175 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
3667 | 6345 | 6.839124 | TTTCCTTTATACCACACGAGACTA | 57.161 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
3669 | 6347 | 6.790285 | TTTTTCCTTTATACCACACGAGAC | 57.210 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
3793 | 8233 | 5.189736 | TCCTATGCTGTTTCTACAATCCAGT | 59.810 | 40.000 | 0.00 | 0.00 | 32.92 | 4.00 |
3798 | 8238 | 5.882557 | CCACTTCCTATGCTGTTTCTACAAT | 59.117 | 40.000 | 0.00 | 0.00 | 32.92 | 2.71 |
3800 | 8240 | 4.832248 | CCACTTCCTATGCTGTTTCTACA | 58.168 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
3807 | 8248 | 1.352352 | AGTTGCCACTTCCTATGCTGT | 59.648 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
3808 | 8249 | 1.741706 | CAGTTGCCACTTCCTATGCTG | 59.258 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
3811 | 8252 | 5.183713 | TGAAATTCAGTTGCCACTTCCTATG | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 2.23 |
3812 | 8253 | 5.183904 | GTGAAATTCAGTTGCCACTTCCTAT | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3813 | 8254 | 4.518970 | GTGAAATTCAGTTGCCACTTCCTA | 59.481 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
3815 | 8256 | 3.068024 | TGTGAAATTCAGTTGCCACTTCC | 59.932 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
3816 | 8257 | 4.305989 | TGTGAAATTCAGTTGCCACTTC | 57.694 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
3887 | 8339 | 5.065090 | TGCGACAACAAATCCATATCTCTTG | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3956 | 8481 | 2.158682 | TGTCAGGTACACCAGCATGTTT | 60.159 | 45.455 | 0.38 | 0.00 | 38.89 | 2.83 |
4070 | 8596 | 2.799371 | CCGAGGTAGGTGTCGCTC | 59.201 | 66.667 | 0.00 | 0.00 | 34.78 | 5.03 |
4130 | 8672 | 1.145598 | CGTGAGGATGAGCATGCCT | 59.854 | 57.895 | 15.66 | 3.13 | 33.97 | 4.75 |
4208 | 8751 | 2.829384 | GCCAGTGGGACCCTCACAA | 61.829 | 63.158 | 13.00 | 0.00 | 37.58 | 3.33 |
5015 | 9570 | 1.207593 | CTTTGTGAAGCGGCGAAGG | 59.792 | 57.895 | 12.98 | 0.00 | 0.00 | 3.46 |
5060 | 9615 | 2.993264 | AACCCGACACCGATCCGT | 60.993 | 61.111 | 0.00 | 0.00 | 38.22 | 4.69 |
5096 | 9651 | 2.672996 | GCCGCTGACACCACCATT | 60.673 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
5267 | 9825 | 2.060980 | CAGGAAGTAGAGCGCCCCT | 61.061 | 63.158 | 2.29 | 4.13 | 0.00 | 4.79 |
5436 | 9994 | 1.613836 | AAGTAGACGAGGTTCACGGT | 58.386 | 50.000 | 0.00 | 0.00 | 34.93 | 4.83 |
5504 | 10062 | 1.219124 | GAGCTCAACATCTCCGGCA | 59.781 | 57.895 | 9.40 | 0.00 | 0.00 | 5.69 |
5516 | 10074 | 2.861006 | CTGTCGTCGTCGAGCTCA | 59.139 | 61.111 | 15.40 | 0.00 | 46.96 | 4.26 |
5649 | 10213 | 2.792890 | CGGGATCGATCGATGAGCATAC | 60.793 | 54.545 | 33.86 | 17.34 | 39.00 | 2.39 |
5650 | 10214 | 1.401905 | CGGGATCGATCGATGAGCATA | 59.598 | 52.381 | 33.86 | 2.99 | 39.00 | 3.14 |
5651 | 10215 | 0.172127 | CGGGATCGATCGATGAGCAT | 59.828 | 55.000 | 33.86 | 11.11 | 39.00 | 3.79 |
5652 | 10216 | 1.581447 | CGGGATCGATCGATGAGCA | 59.419 | 57.895 | 33.86 | 4.67 | 39.00 | 4.26 |
5687 | 10251 | 6.591448 | GGGCTTTTTGATTAGTTCCAAATCTG | 59.409 | 38.462 | 0.00 | 0.00 | 34.95 | 2.90 |
5711 | 10275 | 4.272489 | TGCTATTCAATCTCCCTTGTTGG | 58.728 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
5712 | 10276 | 4.201990 | GCTGCTATTCAATCTCCCTTGTTG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.33 |
5713 | 10277 | 3.950395 | GCTGCTATTCAATCTCCCTTGTT | 59.050 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
5715 | 10279 | 3.548770 | TGCTGCTATTCAATCTCCCTTG | 58.451 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
5716 | 10280 | 3.939740 | TGCTGCTATTCAATCTCCCTT | 57.060 | 42.857 | 0.00 | 0.00 | 0.00 | 3.95 |
5717 | 10281 | 3.939740 | TTGCTGCTATTCAATCTCCCT | 57.060 | 42.857 | 0.00 | 0.00 | 0.00 | 4.20 |
5772 | 10336 | 2.417257 | GGCGCAGATCATTGCCCAA | 61.417 | 57.895 | 10.83 | 0.00 | 41.70 | 4.12 |
5773 | 10337 | 2.829914 | GGCGCAGATCATTGCCCA | 60.830 | 61.111 | 10.83 | 0.00 | 41.70 | 5.36 |
6051 | 10636 | 2.685897 | CCACGGAGGTTTTCAGAAACAA | 59.314 | 45.455 | 0.00 | 0.00 | 45.52 | 2.83 |
6170 | 10764 | 3.344215 | GCGGCGAGATCCAGCATG | 61.344 | 66.667 | 12.98 | 5.13 | 34.54 | 4.06 |
6171 | 10765 | 4.615815 | GGCGGCGAGATCCAGCAT | 62.616 | 66.667 | 12.98 | 0.00 | 34.54 | 3.79 |
6289 | 10883 | 3.746492 | GCTACGACCTTGTGACATCTTTT | 59.254 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
6384 | 11038 | 2.543777 | AGTTGCAACCGCTAAGAGAA | 57.456 | 45.000 | 25.62 | 0.00 | 39.64 | 2.87 |
6385 | 11039 | 2.543777 | AAGTTGCAACCGCTAAGAGA | 57.456 | 45.000 | 25.62 | 0.00 | 39.64 | 3.10 |
6426 | 11080 | 5.790593 | ACCGTTGAGATAGAAAGCTACAAA | 58.209 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
6555 | 11209 | 7.951530 | AATGCTACAACCTTCAATGAAAAAG | 57.048 | 32.000 | 0.00 | 0.00 | 0.00 | 2.27 |

Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.