Multiple sequence alignment - TraesCS5B01G000600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G000600 chr5B 100.000 2777 0 0 1 2777 228460 231236 0.000000e+00 5129.0
1 TraesCS5B01G000600 chr5B 100.000 2462 0 0 3080 5541 231539 234000 0.000000e+00 4547.0
2 TraesCS5B01G000600 chr5B 94.286 525 12 5 5017 5541 1579707 1580213 0.000000e+00 787.0
3 TraesCS5B01G000600 chr5B 83.829 538 49 18 5017 5533 2016246 2015726 1.400000e-130 477.0
4 TraesCS5B01G000600 chr5B 89.524 210 5 2 5017 5226 5919711 5919519 3.310000e-62 250.0
5 TraesCS5B01G000600 chr5D 93.330 1964 40 22 3080 4995 95966 97886 0.000000e+00 2817.0
6 TraesCS5B01G000600 chr5D 95.748 682 7 7 2105 2777 95265 95933 0.000000e+00 1079.0
7 TraesCS5B01G000600 chr5D 84.911 729 55 31 724 1422 93538 94241 0.000000e+00 686.0
8 TraesCS5B01G000600 chr5D 89.565 460 9 11 1668 2098 94679 95128 1.050000e-151 547.0
9 TraesCS5B01G000600 chr5D 86.007 536 34 20 5018 5540 145673 146180 2.270000e-148 536.0
10 TraesCS5B01G000600 chr5D 86.007 536 34 20 5018 5540 360689 361196 2.270000e-148 536.0
11 TraesCS5B01G000600 chr5D 85.847 537 32 20 5018 5540 105724 106230 1.060000e-146 531.0
12 TraesCS5B01G000600 chr5D 93.357 286 18 1 243 528 321992931 321992647 6.640000e-114 422.0
13 TraesCS5B01G000600 chr5D 96.471 85 3 0 1 85 92123 92207 2.080000e-29 141.0
14 TraesCS5B01G000600 chr5D 92.708 96 7 0 591 686 92792 92887 7.480000e-29 139.0
15 TraesCS5B01G000600 chr5D 89.583 96 10 0 591 686 103219289 103219384 7.540000e-24 122.0
16 TraesCS5B01G000600 chr5D 96.552 58 0 2 1455 1512 94248 94303 1.640000e-15 95.3
17 TraesCS5B01G000600 chr5D 93.220 59 4 0 531 589 92370 92428 2.750000e-13 87.9
18 TraesCS5B01G000600 chr5A 89.374 1854 90 40 3080 4891 336415 334627 0.000000e+00 2233.0
19 TraesCS5B01G000600 chr5A 92.097 658 24 10 2105 2753 337089 336451 0.000000e+00 902.0
20 TraesCS5B01G000600 chr5A 83.589 652 41 33 693 1290 338976 338337 8.110000e-153 551.0
21 TraesCS5B01G000600 chr5A 88.546 454 21 9 1668 2100 337668 337225 6.360000e-144 521.0
22 TraesCS5B01G000600 chr5A 83.799 537 51 18 5017 5533 306593 306073 1.400000e-130 477.0
23 TraesCS5B01G000600 chr5A 93.023 43 2 1 4901 4942 334569 334527 1.670000e-05 62.1
24 TraesCS5B01G000600 chr2D 87.500 1848 114 45 3080 4891 628900060 628901826 0.000000e+00 2025.0
25 TraesCS5B01G000600 chr2D 90.729 658 33 10 2105 2753 628899386 628900024 0.000000e+00 852.0
26 TraesCS5B01G000600 chr2D 82.907 860 55 41 687 1512 628897495 628898296 0.000000e+00 689.0
27 TraesCS5B01G000600 chr2D 88.692 451 22 16 1668 2100 628898782 628899221 1.770000e-144 523.0
28 TraesCS5B01G000600 chr2D 94.915 118 5 1 91 208 628896224 628896340 3.410000e-42 183.0
29 TraesCS5B01G000600 chr2D 96.471 85 3 0 1 85 628896096 628896180 2.080000e-29 141.0
30 TraesCS5B01G000600 chr2D 90.909 77 7 0 2 78 628896174 628896250 2.730000e-18 104.0
31 TraesCS5B01G000600 chr2D 93.333 60 2 2 4889 4948 628901848 628901905 2.750000e-13 87.9
32 TraesCS5B01G000600 chrUn 94.857 525 9 3 5017 5541 162181708 162181202 0.000000e+00 804.0
33 TraesCS5B01G000600 chrUn 94.857 525 9 3 5017 5541 162185004 162184498 0.000000e+00 804.0
34 TraesCS5B01G000600 chrUn 94.857 525 9 5 5017 5541 222148057 222148563 0.000000e+00 804.0
35 TraesCS5B01G000600 chrUn 94.667 525 10 3 5017 5541 144675366 144674860 0.000000e+00 798.0
36 TraesCS5B01G000600 chr7B 94.755 286 14 1 243 528 10182720 10182436 1.420000e-120 444.0
37 TraesCS5B01G000600 chr3B 94.755 286 14 1 243 528 122890415 122890131 1.420000e-120 444.0
38 TraesCS5B01G000600 chr3B 94.755 286 14 1 243 528 573895455 573895171 1.420000e-120 444.0
39 TraesCS5B01G000600 chr3B 93.662 284 17 1 244 527 738202565 738202847 1.850000e-114 424.0
40 TraesCS5B01G000600 chr3B 89.831 59 6 0 534 592 815345755 815345697 5.950000e-10 76.8
41 TraesCS5B01G000600 chr1B 94.056 286 16 1 243 528 109402620 109402336 3.070000e-117 433.0
42 TraesCS5B01G000600 chr1B 94.056 286 16 1 243 528 580654950 580655234 3.070000e-117 433.0
43 TraesCS5B01G000600 chr1B 93.706 286 17 1 243 528 519099394 519099678 1.430000e-115 427.0
44 TraesCS5B01G000600 chr1B 90.625 96 9 0 591 686 366305598 366305693 1.620000e-25 128.0
45 TraesCS5B01G000600 chr6B 93.706 286 17 1 243 528 608490291 608490575 1.430000e-115 427.0
46 TraesCS5B01G000600 chr6B 94.444 36 2 0 1626 1661 517603776 517603741 7.750000e-04 56.5
47 TraesCS5B01G000600 chr4D 93.750 96 6 0 591 686 211734975 211735070 1.610000e-30 145.0
48 TraesCS5B01G000600 chr4D 91.579 95 8 0 592 686 380140998 380140904 1.250000e-26 132.0
49 TraesCS5B01G000600 chr6D 91.919 99 5 1 591 686 119256713 119256811 9.680000e-28 135.0
50 TraesCS5B01G000600 chr3A 90.722 97 9 0 591 687 619654782 619654686 4.500000e-26 130.0
51 TraesCS5B01G000600 chr7D 90.625 96 9 0 591 686 416932234 416932139 1.620000e-25 128.0
52 TraesCS5B01G000600 chr7A 90.625 96 9 0 591 686 481540983 481540888 1.620000e-25 128.0
53 TraesCS5B01G000600 chr4A 94.444 36 2 0 1626 1661 130187057 130187022 7.750000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G000600 chr5B 228460 234000 5540 False 4838.0000 5129 100.000000 1 5541 2 chr5B.!!$F2 5540
1 TraesCS5B01G000600 chr5B 1579707 1580213 506 False 787.0000 787 94.286000 5017 5541 1 chr5B.!!$F1 524
2 TraesCS5B01G000600 chr5B 2015726 2016246 520 True 477.0000 477 83.829000 5017 5533 1 chr5B.!!$R1 516
3 TraesCS5B01G000600 chr5D 92123 97886 5763 False 699.0250 2817 92.813125 1 4995 8 chr5D.!!$F5 4994
4 TraesCS5B01G000600 chr5D 145673 146180 507 False 536.0000 536 86.007000 5018 5540 1 chr5D.!!$F2 522
5 TraesCS5B01G000600 chr5D 360689 361196 507 False 536.0000 536 86.007000 5018 5540 1 chr5D.!!$F3 522
6 TraesCS5B01G000600 chr5D 105724 106230 506 False 531.0000 531 85.847000 5018 5540 1 chr5D.!!$F1 522
7 TraesCS5B01G000600 chr5A 334527 338976 4449 True 853.8200 2233 89.325800 693 4942 5 chr5A.!!$R2 4249
8 TraesCS5B01G000600 chr5A 306073 306593 520 True 477.0000 477 83.799000 5017 5533 1 chr5A.!!$R1 516
9 TraesCS5B01G000600 chr2D 628896096 628901905 5809 False 575.6125 2025 90.682000 1 4948 8 chr2D.!!$F1 4947
10 TraesCS5B01G000600 chrUn 162181202 162185004 3802 True 804.0000 804 94.857000 5017 5541 2 chrUn.!!$R2 524
11 TraesCS5B01G000600 chrUn 222148057 222148563 506 False 804.0000 804 94.857000 5017 5541 1 chrUn.!!$F1 524
12 TraesCS5B01G000600 chrUn 144674860 144675366 506 True 798.0000 798 94.667000 5017 5541 1 chrUn.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 374 0.032540 CTTTGGTTGAACAGCCTGCC 59.967 55.000 8.93 0.00 32.40 4.85 F
856 1944 0.182299 CTCCCTCCTTTGCTCCATCC 59.818 60.000 0.00 0.00 0.00 3.51 F
857 1945 0.253347 TCCCTCCTTTGCTCCATCCT 60.253 55.000 0.00 0.00 0.00 3.24 F
2233 4037 0.112995 TTGAATGTGCCCTCCTGCTT 59.887 50.000 0.00 0.00 0.00 3.91 F
2240 4044 0.771127 TGCCCTCCTGCTTAAACACT 59.229 50.000 0.00 0.00 0.00 3.55 F
2241 4045 1.982226 TGCCCTCCTGCTTAAACACTA 59.018 47.619 0.00 0.00 0.00 2.74 F
2242 4046 2.373836 TGCCCTCCTGCTTAAACACTAA 59.626 45.455 0.00 0.00 0.00 2.24 F
3866 5674 0.690744 AAGGGCCATGTAAATGGGGC 60.691 55.000 14.08 6.71 45.67 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1270 2409 0.033781 GCAAGCAAGCACCAAATCCA 59.966 50.000 0.00 0.0 0.00 3.41 R
2100 3733 0.323629 TCCACATCTGGAAACCGACC 59.676 55.000 0.00 0.0 44.26 4.79 R
2476 4280 0.534873 TCGCATGCCACAGCTAGTAA 59.465 50.000 13.15 0.0 40.80 2.24 R
3319 5124 0.846693 AGGCCACAGTTCCTTTGAGT 59.153 50.000 5.01 0.0 0.00 3.41 R
3783 5591 1.586028 CCCCTTTGCATGGTTCACG 59.414 57.895 0.00 0.0 0.00 4.35 R
3866 5674 2.034179 TCGGTAGATACGTTCATGCCAG 59.966 50.000 0.00 0.0 0.00 4.85 R
3921 5729 6.199908 CAGATGTAAATTCACTAGGCTTCTCG 59.800 42.308 0.00 0.0 0.00 4.04 R
5015 6933 0.391927 CGGGGTCACGGCTTTATCAA 60.392 55.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 2.186076 CTTGACGCCGAGATGTTACTC 58.814 52.381 0.00 0.00 0.00 2.59
86 87 1.460504 TGACGCCGAGATGTTACTCT 58.539 50.000 0.00 0.00 35.06 3.24
87 88 1.132453 TGACGCCGAGATGTTACTCTG 59.868 52.381 0.00 0.00 35.06 3.35
88 89 1.400846 GACGCCGAGATGTTACTCTGA 59.599 52.381 0.00 0.00 35.06 3.27
89 90 1.816835 ACGCCGAGATGTTACTCTGAA 59.183 47.619 0.00 0.00 35.06 3.02
143 182 2.677228 CCGAGGCTGGGGTGATTT 59.323 61.111 7.81 0.00 0.00 2.17
170 209 0.248336 TCGCGTAGTCTTATGGTGCG 60.248 55.000 5.77 0.00 44.90 5.34
208 247 1.555533 GTCCTTGAGGGAGATCGGTTT 59.444 52.381 0.00 0.00 46.10 3.27
211 250 0.108329 TTGAGGGAGATCGGTTTCGC 60.108 55.000 0.00 0.00 36.13 4.70
212 251 1.227292 GAGGGAGATCGGTTTCGCC 60.227 63.158 0.00 0.00 35.08 5.54
221 260 2.125832 GGTTTCGCCGATGTCCGA 60.126 61.111 0.00 0.00 41.76 4.55
222 261 1.520787 GGTTTCGCCGATGTCCGAT 60.521 57.895 0.00 0.00 41.76 4.18
223 262 0.249155 GGTTTCGCCGATGTCCGATA 60.249 55.000 0.00 0.00 41.76 2.92
224 263 1.563111 GTTTCGCCGATGTCCGATAA 58.437 50.000 0.00 0.00 41.76 1.75
225 264 1.521423 GTTTCGCCGATGTCCGATAAG 59.479 52.381 0.00 0.00 41.76 1.73
226 265 0.596600 TTCGCCGATGTCCGATAAGC 60.597 55.000 0.00 0.00 41.76 3.09
227 266 2.022129 CGCCGATGTCCGATAAGCC 61.022 63.158 0.00 0.00 41.76 4.35
228 267 1.668151 GCCGATGTCCGATAAGCCC 60.668 63.158 0.00 0.00 41.76 5.19
229 268 2.050269 CCGATGTCCGATAAGCCCT 58.950 57.895 0.00 0.00 41.76 5.19
230 269 0.038159 CCGATGTCCGATAAGCCCTC 60.038 60.000 0.00 0.00 41.76 4.30
231 270 0.387367 CGATGTCCGATAAGCCCTCG 60.387 60.000 0.00 0.00 41.76 4.63
232 271 0.959553 GATGTCCGATAAGCCCTCGA 59.040 55.000 2.10 0.00 38.38 4.04
233 272 1.546476 GATGTCCGATAAGCCCTCGAT 59.454 52.381 2.10 0.00 38.38 3.59
234 273 0.959553 TGTCCGATAAGCCCTCGATC 59.040 55.000 2.10 0.00 38.38 3.69
235 274 0.244178 GTCCGATAAGCCCTCGATCC 59.756 60.000 2.10 0.00 38.38 3.36
236 275 0.178973 TCCGATAAGCCCTCGATCCA 60.179 55.000 2.10 0.00 38.38 3.41
237 276 0.038159 CCGATAAGCCCTCGATCCAC 60.038 60.000 2.10 0.00 38.38 4.02
238 277 0.387367 CGATAAGCCCTCGATCCACG 60.387 60.000 0.00 0.00 44.09 4.94
239 278 0.674534 GATAAGCCCTCGATCCACGT 59.325 55.000 0.00 0.00 43.13 4.49
240 279 1.068741 GATAAGCCCTCGATCCACGTT 59.931 52.381 0.00 0.00 43.13 3.99
241 280 0.174845 TAAGCCCTCGATCCACGTTG 59.825 55.000 0.00 0.00 43.13 4.10
242 281 3.195698 GCCCTCGATCCACGTTGC 61.196 66.667 0.00 0.00 43.13 4.17
243 282 2.264480 CCCTCGATCCACGTTGCA 59.736 61.111 0.00 0.00 43.13 4.08
244 283 1.153369 CCCTCGATCCACGTTGCAT 60.153 57.895 0.00 0.00 43.13 3.96
245 284 0.744414 CCCTCGATCCACGTTGCATT 60.744 55.000 0.00 0.00 43.13 3.56
246 285 0.374758 CCTCGATCCACGTTGCATTG 59.625 55.000 0.00 0.00 43.13 2.82
247 286 0.374758 CTCGATCCACGTTGCATTGG 59.625 55.000 3.59 3.59 43.13 3.16
248 287 1.226379 CGATCCACGTTGCATTGGC 60.226 57.895 4.91 0.00 37.64 4.52
258 297 2.491152 GCATTGGCATCACCGGTG 59.509 61.111 29.26 29.26 43.94 4.94
259 298 2.491152 CATTGGCATCACCGGTGC 59.509 61.111 30.25 18.46 43.94 5.01
264 303 2.800736 GCATCACCGGTGCCAATC 59.199 61.111 30.25 12.41 36.61 2.67
265 304 3.101209 CATCACCGGTGCCAATCG 58.899 61.111 30.25 9.75 0.00 3.34
266 305 1.745115 CATCACCGGTGCCAATCGT 60.745 57.895 30.25 6.28 0.00 3.73
267 306 1.449601 ATCACCGGTGCCAATCGTC 60.450 57.895 30.25 0.00 0.00 4.20
268 307 3.487202 CACCGGTGCCAATCGTCG 61.487 66.667 24.02 0.00 0.00 5.12
269 308 3.998672 ACCGGTGCCAATCGTCGT 61.999 61.111 6.12 0.00 0.00 4.34
270 309 3.186047 CCGGTGCCAATCGTCGTC 61.186 66.667 0.00 0.00 0.00 4.20
271 310 2.126071 CGGTGCCAATCGTCGTCT 60.126 61.111 0.00 0.00 0.00 4.18
272 311 2.158959 CGGTGCCAATCGTCGTCTC 61.159 63.158 0.00 0.00 0.00 3.36
273 312 2.158959 GGTGCCAATCGTCGTCTCG 61.159 63.158 0.00 0.00 0.00 4.04
274 313 2.506217 TGCCAATCGTCGTCTCGC 60.506 61.111 0.00 0.00 0.00 5.03
275 314 3.255379 GCCAATCGTCGTCTCGCC 61.255 66.667 0.00 0.00 0.00 5.54
276 315 2.949678 CCAATCGTCGTCTCGCCG 60.950 66.667 0.00 0.00 0.00 6.46
277 316 2.202440 CAATCGTCGTCTCGCCGT 60.202 61.111 0.00 0.00 0.00 5.68
278 317 2.202440 AATCGTCGTCTCGCCGTG 60.202 61.111 0.00 0.00 0.00 4.94
279 318 4.831307 ATCGTCGTCTCGCCGTGC 62.831 66.667 0.00 0.00 0.00 5.34
297 336 3.564027 GGTACGCACCGCTCATGC 61.564 66.667 0.00 0.00 39.81 4.06
298 337 2.509336 GTACGCACCGCTCATGCT 60.509 61.111 0.00 0.00 41.10 3.79
299 338 2.202743 TACGCACCGCTCATGCTC 60.203 61.111 0.00 0.00 41.10 4.26
300 339 3.716539 TACGCACCGCTCATGCTCC 62.717 63.158 0.00 0.00 41.10 4.70
302 341 3.200593 GCACCGCTCATGCTCCAG 61.201 66.667 0.00 0.00 40.08 3.86
303 342 2.513204 CACCGCTCATGCTCCAGG 60.513 66.667 0.00 0.00 36.97 4.45
304 343 3.790437 ACCGCTCATGCTCCAGGG 61.790 66.667 0.00 0.00 36.97 4.45
305 344 4.559063 CCGCTCATGCTCCAGGGG 62.559 72.222 1.49 1.49 36.48 4.79
306 345 3.790437 CGCTCATGCTCCAGGGGT 61.790 66.667 0.00 0.00 36.97 4.95
307 346 2.191641 GCTCATGCTCCAGGGGTC 59.808 66.667 0.00 0.00 36.03 4.46
308 347 2.503061 CTCATGCTCCAGGGGTCG 59.497 66.667 0.00 0.00 0.00 4.79
309 348 3.083349 TCATGCTCCAGGGGTCGG 61.083 66.667 0.00 0.00 0.00 4.79
310 349 4.864334 CATGCTCCAGGGGTCGGC 62.864 72.222 0.00 0.00 0.00 5.54
319 358 4.660938 GGGGTCGGCCTGCACTTT 62.661 66.667 5.77 0.00 34.45 2.66
320 359 3.365265 GGGTCGGCCTGCACTTTG 61.365 66.667 5.77 0.00 34.45 2.77
321 360 3.365265 GGTCGGCCTGCACTTTGG 61.365 66.667 0.00 0.00 0.00 3.28
322 361 2.594592 GTCGGCCTGCACTTTGGT 60.595 61.111 0.00 0.00 0.00 3.67
323 362 2.193536 GTCGGCCTGCACTTTGGTT 61.194 57.895 0.00 0.00 0.00 3.67
324 363 2.192861 TCGGCCTGCACTTTGGTTG 61.193 57.895 0.00 0.00 0.00 3.77
325 364 2.192861 CGGCCTGCACTTTGGTTGA 61.193 57.895 0.00 0.00 0.00 3.18
326 365 1.733402 CGGCCTGCACTTTGGTTGAA 61.733 55.000 0.00 0.00 0.00 2.69
327 366 0.249447 GGCCTGCACTTTGGTTGAAC 60.249 55.000 0.00 0.00 0.00 3.18
328 367 0.459489 GCCTGCACTTTGGTTGAACA 59.541 50.000 0.00 0.00 0.00 3.18
329 368 1.536709 GCCTGCACTTTGGTTGAACAG 60.537 52.381 0.00 0.00 0.00 3.16
330 369 1.536709 CCTGCACTTTGGTTGAACAGC 60.537 52.381 0.00 0.00 0.00 4.40
331 370 0.459489 TGCACTTTGGTTGAACAGCC 59.541 50.000 0.00 0.81 0.00 4.85
332 371 0.746659 GCACTTTGGTTGAACAGCCT 59.253 50.000 8.93 0.00 32.40 4.58
333 372 1.536709 GCACTTTGGTTGAACAGCCTG 60.537 52.381 8.93 0.00 32.40 4.85
334 373 0.746659 ACTTTGGTTGAACAGCCTGC 59.253 50.000 8.93 0.00 32.40 4.85
335 374 0.032540 CTTTGGTTGAACAGCCTGCC 59.967 55.000 8.93 0.00 32.40 4.85
336 375 1.733402 TTTGGTTGAACAGCCTGCCG 61.733 55.000 8.93 0.00 32.40 5.69
337 376 2.281484 GGTTGAACAGCCTGCCGA 60.281 61.111 0.00 0.00 0.00 5.54
338 377 1.675641 GGTTGAACAGCCTGCCGAT 60.676 57.895 0.00 0.00 0.00 4.18
339 378 1.503542 GTTGAACAGCCTGCCGATG 59.496 57.895 0.00 0.00 0.00 3.84
340 379 1.675310 TTGAACAGCCTGCCGATGG 60.675 57.895 0.00 0.00 0.00 3.51
341 380 2.123248 TTGAACAGCCTGCCGATGGA 62.123 55.000 0.00 0.00 0.00 3.41
342 381 2.045926 AACAGCCTGCCGATGGAC 60.046 61.111 0.00 0.00 0.00 4.02
343 382 2.803155 GAACAGCCTGCCGATGGACA 62.803 60.000 0.00 0.00 0.00 4.02
344 383 2.513204 CAGCCTGCCGATGGACAG 60.513 66.667 0.00 0.00 0.00 3.51
345 384 4.479993 AGCCTGCCGATGGACAGC 62.480 66.667 0.00 0.00 32.37 4.40
346 385 4.783621 GCCTGCCGATGGACAGCA 62.784 66.667 0.00 0.00 32.37 4.41
347 386 2.821366 CCTGCCGATGGACAGCAC 60.821 66.667 0.00 0.00 32.37 4.40
348 387 2.821366 CTGCCGATGGACAGCACC 60.821 66.667 0.00 0.00 32.06 5.01
349 388 3.610619 CTGCCGATGGACAGCACCA 62.611 63.158 0.00 0.00 44.41 4.17
350 389 2.359850 GCCGATGGACAGCACCAA 60.360 61.111 0.00 0.00 43.47 3.67
351 390 2.690778 GCCGATGGACAGCACCAAC 61.691 63.158 0.00 0.00 43.47 3.77
352 391 3.168271 CGATGGACAGCACCAACG 58.832 61.111 11.19 11.19 46.05 4.10
353 392 2.870372 GATGGACAGCACCAACGC 59.130 61.111 0.00 0.00 43.47 4.84
354 393 3.027170 GATGGACAGCACCAACGCG 62.027 63.158 3.53 3.53 43.47 6.01
355 394 3.825160 ATGGACAGCACCAACGCGT 62.825 57.895 5.58 5.58 43.47 6.01
356 395 4.012895 GGACAGCACCAACGCGTG 62.013 66.667 14.98 3.05 36.85 5.34
364 403 4.657824 CCAACGCGTGGGTCGACT 62.658 66.667 25.20 0.00 44.64 4.18
365 404 2.660552 CAACGCGTGGGTCGACTT 60.661 61.111 14.98 0.00 42.86 3.01
366 405 2.355481 AACGCGTGGGTCGACTTC 60.355 61.111 14.98 8.89 42.86 3.01
367 406 4.695231 ACGCGTGGGTCGACTTCG 62.695 66.667 12.93 17.22 42.86 3.79
376 415 4.417641 TCGACTTCGAGGAAGCCT 57.582 55.556 0.00 0.00 42.79 4.58
377 416 2.654802 TCGACTTCGAGGAAGCCTT 58.345 52.632 0.00 0.00 42.79 4.35
378 417 0.966920 TCGACTTCGAGGAAGCCTTT 59.033 50.000 0.00 0.00 42.79 3.11
379 418 1.071605 CGACTTCGAGGAAGCCTTTG 58.928 55.000 0.00 0.00 42.79 2.77
380 419 1.605712 CGACTTCGAGGAAGCCTTTGT 60.606 52.381 0.00 0.00 42.79 2.83
381 420 2.070028 GACTTCGAGGAAGCCTTTGTC 58.930 52.381 0.00 0.00 42.79 3.18
382 421 1.270893 ACTTCGAGGAAGCCTTTGTCC 60.271 52.381 0.00 0.00 42.79 4.02
383 422 0.320421 TTCGAGGAAGCCTTTGTCCG 60.320 55.000 0.00 0.00 39.06 4.79
384 423 2.391389 CGAGGAAGCCTTTGTCCGC 61.391 63.158 0.00 0.00 39.06 5.54
385 424 1.302511 GAGGAAGCCTTTGTCCGCA 60.303 57.895 0.00 0.00 39.06 5.69
386 425 0.889186 GAGGAAGCCTTTGTCCGCAA 60.889 55.000 0.00 0.00 39.06 4.85
387 426 1.172812 AGGAAGCCTTTGTCCGCAAC 61.173 55.000 0.00 0.00 39.06 4.17
388 427 1.172812 GGAAGCCTTTGTCCGCAACT 61.173 55.000 0.00 0.00 33.82 3.16
389 428 0.668535 GAAGCCTTTGTCCGCAACTT 59.331 50.000 0.00 0.00 33.82 2.66
390 429 0.668535 AAGCCTTTGTCCGCAACTTC 59.331 50.000 0.00 0.00 33.82 3.01
391 430 0.465460 AGCCTTTGTCCGCAACTTCA 60.465 50.000 0.00 0.00 33.82 3.02
392 431 0.383949 GCCTTTGTCCGCAACTTCAA 59.616 50.000 0.00 0.00 33.82 2.69
393 432 1.600413 GCCTTTGTCCGCAACTTCAAG 60.600 52.381 0.00 0.00 33.82 3.02
394 433 1.001378 CCTTTGTCCGCAACTTCAAGG 60.001 52.381 0.00 0.00 33.82 3.61
395 434 1.001378 CTTTGTCCGCAACTTCAAGGG 60.001 52.381 0.00 0.00 33.82 3.95
396 435 0.821711 TTGTCCGCAACTTCAAGGGG 60.822 55.000 0.00 0.00 39.04 4.79
397 436 1.072505 GTCCGCAACTTCAAGGGGA 59.927 57.895 0.00 0.00 43.58 4.81
398 437 1.072505 TCCGCAACTTCAAGGGGAC 59.927 57.895 0.00 0.00 41.31 4.46
399 438 1.228124 CCGCAACTTCAAGGGGACA 60.228 57.895 0.00 0.00 40.00 4.02
400 439 0.609131 CCGCAACTTCAAGGGGACAT 60.609 55.000 0.00 0.00 40.00 3.06
401 440 1.339631 CCGCAACTTCAAGGGGACATA 60.340 52.381 0.00 0.00 40.00 2.29
402 441 1.737793 CGCAACTTCAAGGGGACATAC 59.262 52.381 0.00 0.00 0.00 2.39
403 442 2.790433 GCAACTTCAAGGGGACATACA 58.210 47.619 0.00 0.00 0.00 2.29
404 443 3.153919 GCAACTTCAAGGGGACATACAA 58.846 45.455 0.00 0.00 0.00 2.41
405 444 3.191371 GCAACTTCAAGGGGACATACAAG 59.809 47.826 0.00 0.00 0.00 3.16
406 445 3.073274 ACTTCAAGGGGACATACAAGC 57.927 47.619 0.00 0.00 0.00 4.01
407 446 2.009774 CTTCAAGGGGACATACAAGCG 58.990 52.381 0.00 0.00 0.00 4.68
408 447 1.271856 TCAAGGGGACATACAAGCGA 58.728 50.000 0.00 0.00 0.00 4.93
409 448 1.066430 TCAAGGGGACATACAAGCGAC 60.066 52.381 0.00 0.00 0.00 5.19
410 449 0.252197 AAGGGGACATACAAGCGACC 59.748 55.000 0.00 0.00 0.00 4.79
411 450 1.153229 GGGGACATACAAGCGACCC 60.153 63.158 0.00 0.00 36.90 4.46
412 451 1.520787 GGGACATACAAGCGACCCG 60.521 63.158 0.00 0.00 0.00 5.28
413 452 1.520787 GGACATACAAGCGACCCGG 60.521 63.158 0.00 0.00 0.00 5.73
414 453 1.217244 GACATACAAGCGACCCGGT 59.783 57.895 0.00 0.00 40.00 5.28
415 454 0.804933 GACATACAAGCGACCCGGTC 60.805 60.000 7.59 7.59 36.27 4.79
436 475 4.790962 CCAGCCAGCTCGCCATGT 62.791 66.667 0.00 0.00 0.00 3.21
437 476 3.506096 CAGCCAGCTCGCCATGTG 61.506 66.667 0.00 0.00 0.00 3.21
471 510 4.549516 GAGACCGGCGGCGAGTAC 62.550 72.222 34.49 19.75 0.00 2.73
482 521 2.577112 CGAGTACCTCGCACGCTG 60.577 66.667 0.20 0.00 46.75 5.18
483 522 2.202623 GAGTACCTCGCACGCTGG 60.203 66.667 0.00 1.42 0.00 4.85
484 523 2.675423 AGTACCTCGCACGCTGGA 60.675 61.111 8.48 0.00 0.00 3.86
485 524 2.506438 GTACCTCGCACGCTGGAC 60.506 66.667 8.48 0.00 0.00 4.02
486 525 3.755628 TACCTCGCACGCTGGACC 61.756 66.667 8.48 0.00 0.00 4.46
493 532 4.803426 CACGCTGGACCGAGCTCC 62.803 72.222 8.47 0.00 36.77 4.70
505 544 4.749310 AGCTCCGGAACAGCTGCG 62.749 66.667 15.27 9.57 45.85 5.18
506 545 4.742201 GCTCCGGAACAGCTGCGA 62.742 66.667 15.27 0.70 42.35 5.10
507 546 2.507992 CTCCGGAACAGCTGCGAG 60.508 66.667 15.27 7.26 42.35 5.03
508 547 3.997064 CTCCGGAACAGCTGCGAGG 62.997 68.421 15.27 12.48 42.35 4.63
521 560 4.052229 CGAGGGCGTCCGTGAAGT 62.052 66.667 0.00 0.00 38.33 3.01
522 561 2.126031 GAGGGCGTCCGTGAAGTC 60.126 66.667 0.00 0.00 38.33 3.01
523 562 3.644399 GAGGGCGTCCGTGAAGTCC 62.644 68.421 0.00 3.04 36.11 3.85
524 563 3.998672 GGGCGTCCGTGAAGTCCA 61.999 66.667 0.00 0.00 35.94 4.02
525 564 2.432628 GGCGTCCGTGAAGTCCAG 60.433 66.667 0.00 0.00 0.00 3.86
526 565 2.432628 GCGTCCGTGAAGTCCAGG 60.433 66.667 0.00 0.00 0.00 4.45
527 566 2.432628 CGTCCGTGAAGTCCAGGC 60.433 66.667 0.00 0.00 0.00 4.85
528 567 2.047179 GTCCGTGAAGTCCAGGCC 60.047 66.667 0.00 0.00 0.00 5.19
529 568 2.203788 TCCGTGAAGTCCAGGCCT 60.204 61.111 0.00 0.00 0.00 5.19
530 569 2.046892 CCGTGAAGTCCAGGCCTG 60.047 66.667 26.87 26.87 0.00 4.85
562 601 0.387367 CGATGTCCGATAAGCCCTCG 60.387 60.000 0.00 0.00 41.76 4.63
600 1002 0.969409 CCCGGAAGAACCCTACGTCT 60.969 60.000 0.73 0.00 34.64 4.18
635 1040 9.846248 TTGTATTGATGATGATGTATCGAGTAG 57.154 33.333 0.00 0.00 38.71 2.57
652 1057 4.819630 CGAGTAGAAGCTTGATCTACCTCT 59.180 45.833 16.88 2.80 46.77 3.69
669 1074 4.964593 ACCTCTAGATCGTAAGGAGAGAC 58.035 47.826 14.77 0.00 36.55 3.36
682 1087 2.680251 GGAGAGACCTAACCCTAAGGG 58.320 57.143 0.00 0.00 41.57 3.95
736 1785 8.466798 TGTACCAGAAAAGAAAAGAAAGGAAAG 58.533 33.333 0.00 0.00 0.00 2.62
744 1793 6.798427 AGAAAAGAAAGGAAAGGAAAAGCT 57.202 33.333 0.00 0.00 0.00 3.74
753 1802 3.329386 GAAAGGAAAAGCTCCCAAATGC 58.671 45.455 0.00 0.00 46.81 3.56
762 1811 1.856629 CTCCCAAATGCCAAGTCCAT 58.143 50.000 0.00 0.00 0.00 3.41
764 1813 1.076841 TCCCAAATGCCAAGTCCATGA 59.923 47.619 0.00 0.00 0.00 3.07
805 1866 1.400494 GAATGACCACATGGCGGTAAC 59.600 52.381 8.91 0.00 36.69 2.50
806 1867 0.326595 ATGACCACATGGCGGTAACA 59.673 50.000 8.91 5.04 36.69 2.41
807 1868 0.326595 TGACCACATGGCGGTAACAT 59.673 50.000 8.91 0.00 36.69 2.71
827 1898 4.131376 CATGCGTGGACCATCCTC 57.869 61.111 0.00 0.00 37.46 3.71
828 1899 1.524002 CATGCGTGGACCATCCTCT 59.476 57.895 0.00 0.00 37.46 3.69
856 1944 0.182299 CTCCCTCCTTTGCTCCATCC 59.818 60.000 0.00 0.00 0.00 3.51
857 1945 0.253347 TCCCTCCTTTGCTCCATCCT 60.253 55.000 0.00 0.00 0.00 3.24
908 2001 1.004277 ACCTGACCGCCATTAACACAT 59.996 47.619 0.00 0.00 0.00 3.21
1184 2298 0.320697 AACGACCTCCACTGTAAGCC 59.679 55.000 0.00 0.00 37.60 4.35
1235 2374 1.834822 CCAGATCTCCCTCCCGGAC 60.835 68.421 0.73 0.00 34.86 4.79
1254 2393 1.005924 ACCAAGATTCCGCCTTTGGAT 59.994 47.619 8.93 0.00 38.00 3.41
1255 2394 2.102578 CCAAGATTCCGCCTTTGGATT 58.897 47.619 0.00 0.00 38.00 3.01
1256 2395 2.159198 CCAAGATTCCGCCTTTGGATTG 60.159 50.000 0.00 0.00 38.00 2.67
1257 2396 1.767759 AGATTCCGCCTTTGGATTGG 58.232 50.000 0.00 0.00 38.00 3.16
1259 2398 1.678101 GATTCCGCCTTTGGATTGGAG 59.322 52.381 0.00 0.00 38.00 3.86
1261 2400 1.379044 CCGCCTTTGGATTGGAGCT 60.379 57.895 0.00 0.00 0.00 4.09
1262 2401 1.379642 CCGCCTTTGGATTGGAGCTC 61.380 60.000 4.71 4.71 0.00 4.09
1263 2402 0.677731 CGCCTTTGGATTGGAGCTCA 60.678 55.000 17.19 0.00 0.00 4.26
1264 2403 1.549203 GCCTTTGGATTGGAGCTCAA 58.451 50.000 17.19 0.00 40.01 3.02
1265 2404 1.203287 GCCTTTGGATTGGAGCTCAAC 59.797 52.381 17.19 0.00 38.31 3.18
1266 2405 1.470098 CCTTTGGATTGGAGCTCAACG 59.530 52.381 17.19 0.00 38.31 4.10
1267 2406 1.470098 CTTTGGATTGGAGCTCAACGG 59.530 52.381 17.19 0.00 38.31 4.44
1268 2407 0.690192 TTGGATTGGAGCTCAACGGA 59.310 50.000 17.19 0.00 38.31 4.69
1269 2408 0.911769 TGGATTGGAGCTCAACGGAT 59.088 50.000 17.19 0.00 38.31 4.18
1270 2409 1.281867 TGGATTGGAGCTCAACGGATT 59.718 47.619 17.19 0.00 38.31 3.01
1391 2547 1.415200 GAGGATGTCAGTACCCCTCC 58.585 60.000 0.00 0.00 37.98 4.30
1407 2622 1.274126 CCTCCCTCCCTCTCTTTTCCT 60.274 57.143 0.00 0.00 0.00 3.36
1409 2624 2.916269 CTCCCTCCCTCTCTTTTCCTTT 59.084 50.000 0.00 0.00 0.00 3.11
1411 2626 2.025793 CCCTCCCTCTCTTTTCCTTTCC 60.026 54.545 0.00 0.00 0.00 3.13
1412 2627 2.916269 CCTCCCTCTCTTTTCCTTTCCT 59.084 50.000 0.00 0.00 0.00 3.36
1413 2628 3.332187 CCTCCCTCTCTTTTCCTTTCCTT 59.668 47.826 0.00 0.00 0.00 3.36
1414 2629 4.566697 CCTCCCTCTCTTTTCCTTTCCTTC 60.567 50.000 0.00 0.00 0.00 3.46
1415 2630 3.330998 TCCCTCTCTTTTCCTTTCCTTCC 59.669 47.826 0.00 0.00 0.00 3.46
1416 2631 3.074538 CCCTCTCTTTTCCTTTCCTTCCA 59.925 47.826 0.00 0.00 0.00 3.53
1417 2632 4.264128 CCCTCTCTTTTCCTTTCCTTCCAT 60.264 45.833 0.00 0.00 0.00 3.41
1418 2633 4.946772 CCTCTCTTTTCCTTTCCTTCCATC 59.053 45.833 0.00 0.00 0.00 3.51
1419 2634 4.923415 TCTCTTTTCCTTTCCTTCCATCC 58.077 43.478 0.00 0.00 0.00 3.51
1420 2635 4.353788 TCTCTTTTCCTTTCCTTCCATCCA 59.646 41.667 0.00 0.00 0.00 3.41
1421 2636 4.666512 TCTTTTCCTTTCCTTCCATCCAG 58.333 43.478 0.00 0.00 0.00 3.86
1422 2637 2.514458 TTCCTTTCCTTCCATCCAGC 57.486 50.000 0.00 0.00 0.00 4.85
1423 2638 1.673767 TCCTTTCCTTCCATCCAGCT 58.326 50.000 0.00 0.00 0.00 4.24
1424 2639 1.561542 TCCTTTCCTTCCATCCAGCTC 59.438 52.381 0.00 0.00 0.00 4.09
1425 2640 1.409381 CCTTTCCTTCCATCCAGCTCC 60.409 57.143 0.00 0.00 0.00 4.70
1426 2641 1.283029 CTTTCCTTCCATCCAGCTCCA 59.717 52.381 0.00 0.00 0.00 3.86
1427 2642 0.914644 TTCCTTCCATCCAGCTCCAG 59.085 55.000 0.00 0.00 0.00 3.86
1428 2643 0.984961 TCCTTCCATCCAGCTCCAGG 60.985 60.000 0.00 0.00 0.00 4.45
1429 2644 1.153005 CTTCCATCCAGCTCCAGGC 60.153 63.158 0.00 0.00 42.19 4.85
1440 2655 1.677942 GCTCCAGGCTACTACGTACT 58.322 55.000 0.00 0.00 38.06 2.73
1441 2656 1.603326 GCTCCAGGCTACTACGTACTC 59.397 57.143 0.00 0.00 38.06 2.59
1442 2657 2.745812 GCTCCAGGCTACTACGTACTCT 60.746 54.545 0.00 0.00 38.06 3.24
1443 2658 3.494048 GCTCCAGGCTACTACGTACTCTA 60.494 52.174 0.00 0.00 38.06 2.43
1444 2659 4.309099 CTCCAGGCTACTACGTACTCTAG 58.691 52.174 0.00 0.00 0.00 2.43
1445 2660 3.708631 TCCAGGCTACTACGTACTCTAGT 59.291 47.826 0.00 0.00 0.00 2.57
1449 2664 5.010516 CAGGCTACTACGTACTCTAGTAGGA 59.989 48.000 23.27 11.32 41.95 2.94
1453 2668 7.257722 GCTACTACGTACTCTAGTAGGATAGG 58.742 46.154 23.27 9.11 41.95 2.57
1461 2676 8.246180 CGTACTCTAGTAGGATAGGAGTAGAAG 58.754 44.444 4.23 0.00 38.32 2.85
1505 2720 3.550842 GCATCGGCTTCATGTAATTTCCC 60.551 47.826 0.00 0.00 36.96 3.97
1506 2721 3.644966 TCGGCTTCATGTAATTTCCCT 57.355 42.857 0.00 0.00 0.00 4.20
1508 2723 3.054728 TCGGCTTCATGTAATTTCCCTGA 60.055 43.478 0.00 0.00 0.00 3.86
1509 2724 3.313526 CGGCTTCATGTAATTTCCCTGAG 59.686 47.826 0.00 0.00 0.00 3.35
1510 2725 3.067320 GGCTTCATGTAATTTCCCTGAGC 59.933 47.826 0.00 0.00 0.00 4.26
1511 2726 3.696051 GCTTCATGTAATTTCCCTGAGCA 59.304 43.478 0.00 0.00 0.00 4.26
1512 2727 4.439289 GCTTCATGTAATTTCCCTGAGCAC 60.439 45.833 0.00 0.00 0.00 4.40
1513 2728 4.299586 TCATGTAATTTCCCTGAGCACA 57.700 40.909 0.00 0.00 0.00 4.57
1514 2729 4.009675 TCATGTAATTTCCCTGAGCACAC 58.990 43.478 0.00 0.00 0.00 3.82
1515 2730 3.500448 TGTAATTTCCCTGAGCACACA 57.500 42.857 0.00 0.00 0.00 3.72
1516 2731 3.826524 TGTAATTTCCCTGAGCACACAA 58.173 40.909 0.00 0.00 0.00 3.33
1517 2732 3.568007 TGTAATTTCCCTGAGCACACAAC 59.432 43.478 0.00 0.00 0.00 3.32
1564 2814 3.314635 GGTTAAAGCTCCATCTGCATCTG 59.685 47.826 0.00 0.00 0.00 2.90
1565 2815 1.390565 AAAGCTCCATCTGCATCTGC 58.609 50.000 0.00 0.00 42.50 4.26
1581 2831 4.482386 CATCTGCATCTTGTTGAACCTTG 58.518 43.478 0.00 0.00 0.00 3.61
1583 2833 3.565482 TCTGCATCTTGTTGAACCTTGAC 59.435 43.478 0.00 0.00 0.00 3.18
1624 2898 2.841442 AAACCACCTGCTCACTAGTC 57.159 50.000 0.00 0.00 0.00 2.59
1629 2961 2.425312 CCACCTGCTCACTAGTCACTAG 59.575 54.545 10.55 10.55 39.72 2.57
1641 2973 6.481434 ACTAGTCACTAGTGTCAAAAACCT 57.519 37.500 17.14 8.83 44.47 3.50
1647 2979 7.494952 AGTCACTAGTGTCAAAAACCTTCTTAC 59.505 37.037 21.99 7.34 0.00 2.34
1651 2983 9.841295 ACTAGTGTCAAAAACCTTCTTACATTA 57.159 29.630 0.00 0.00 0.00 1.90
1657 2989 8.244113 GTCAAAAACCTTCTTACATTATGGGAG 58.756 37.037 0.00 0.00 0.00 4.30
1658 2990 7.396055 TCAAAAACCTTCTTACATTATGGGAGG 59.604 37.037 0.00 0.00 0.00 4.30
1661 2993 4.412528 ACCTTCTTACATTATGGGAGGGAC 59.587 45.833 15.38 0.00 0.00 4.46
1662 2994 4.412199 CCTTCTTACATTATGGGAGGGACA 59.588 45.833 0.00 0.00 0.00 4.02
1663 2995 5.104109 CCTTCTTACATTATGGGAGGGACAA 60.104 44.000 0.00 0.00 0.00 3.18
1664 2996 6.410853 CCTTCTTACATTATGGGAGGGACAAT 60.411 42.308 0.00 0.00 0.00 2.71
1665 2997 6.590656 TCTTACATTATGGGAGGGACAATT 57.409 37.500 0.00 0.00 0.00 2.32
1797 3429 6.402222 TCTTCTTCTTCTTCCAAGCTCATAC 58.598 40.000 0.00 0.00 0.00 2.39
1798 3430 6.212388 TCTTCTTCTTCTTCCAAGCTCATACT 59.788 38.462 0.00 0.00 0.00 2.12
1799 3431 7.397476 TCTTCTTCTTCTTCCAAGCTCATACTA 59.603 37.037 0.00 0.00 0.00 1.82
1800 3432 6.868622 TCTTCTTCTTCCAAGCTCATACTAC 58.131 40.000 0.00 0.00 0.00 2.73
1803 3435 6.868622 TCTTCTTCCAAGCTCATACTACTTC 58.131 40.000 0.00 0.00 0.00 3.01
1814 3447 8.988546 AGCTCATACTACTTCTTATCTTGAGA 57.011 34.615 0.00 0.00 31.90 3.27
1890 3523 1.405461 TCAACGACGAGAAGAAAGCG 58.595 50.000 0.00 0.00 0.00 4.68
1947 3580 3.044059 GAGGGTTCATGCAGCGCAC 62.044 63.158 11.47 0.68 43.04 5.34
1965 3598 0.392998 ACAAGGACGATGACATGCCC 60.393 55.000 0.00 0.00 0.00 5.36
2037 3670 5.701290 CCGTCAAGAGGTACTTTTCATCTTT 59.299 40.000 0.00 0.00 41.55 2.52
2038 3671 6.204882 CCGTCAAGAGGTACTTTTCATCTTTT 59.795 38.462 0.00 0.00 41.55 2.27
2039 3672 7.072030 CGTCAAGAGGTACTTTTCATCTTTTG 58.928 38.462 0.00 0.00 41.55 2.44
2040 3673 6.858478 GTCAAGAGGTACTTTTCATCTTTTGC 59.142 38.462 0.00 0.00 41.55 3.68
2041 3674 5.966742 AGAGGTACTTTTCATCTTTTGCC 57.033 39.130 0.00 0.00 41.55 4.52
2044 3677 7.175104 AGAGGTACTTTTCATCTTTTGCCATA 58.825 34.615 0.00 0.00 41.55 2.74
2045 3678 7.836183 AGAGGTACTTTTCATCTTTTGCCATAT 59.164 33.333 0.00 0.00 41.55 1.78
2046 3679 7.775120 AGGTACTTTTCATCTTTTGCCATATG 58.225 34.615 0.00 0.00 27.25 1.78
2047 3680 6.476706 GGTACTTTTCATCTTTTGCCATATGC 59.523 38.462 0.00 0.00 41.77 3.14
2048 3681 6.290294 ACTTTTCATCTTTTGCCATATGCT 57.710 33.333 0.00 0.00 42.00 3.79
2049 3682 7.408756 ACTTTTCATCTTTTGCCATATGCTA 57.591 32.000 0.00 0.00 42.00 3.49
2051 3684 5.443185 TTCATCTTTTGCCATATGCTAGC 57.557 39.130 8.10 8.10 42.00 3.42
2052 3685 4.722220 TCATCTTTTGCCATATGCTAGCT 58.278 39.130 17.23 4.07 42.00 3.32
2053 3686 5.135383 TCATCTTTTGCCATATGCTAGCTT 58.865 37.500 17.23 12.56 42.00 3.74
2054 3687 4.906065 TCTTTTGCCATATGCTAGCTTG 57.094 40.909 17.23 10.69 42.00 4.01
2055 3688 4.272489 TCTTTTGCCATATGCTAGCTTGT 58.728 39.130 17.23 5.03 42.00 3.16
2056 3689 4.336433 TCTTTTGCCATATGCTAGCTTGTC 59.664 41.667 17.23 1.76 42.00 3.18
2057 3690 2.260844 TGCCATATGCTAGCTTGTCC 57.739 50.000 17.23 2.39 42.00 4.02
2085 3718 3.742882 TGTTTTCTCTTGCAGTCTCATCG 59.257 43.478 0.00 0.00 0.00 3.84
2100 3733 3.119137 TCTCATCGGTGTGTTCCATGTAG 60.119 47.826 0.00 0.00 0.00 2.74
2101 3734 2.093711 TCATCGGTGTGTTCCATGTAGG 60.094 50.000 0.00 0.00 39.47 3.18
2103 3736 1.274167 TCGGTGTGTTCCATGTAGGTC 59.726 52.381 0.00 0.00 39.02 3.85
2133 3929 3.436704 AGATGTGGATTTACGTGTTGCTG 59.563 43.478 0.00 0.00 0.00 4.41
2134 3930 1.265635 TGTGGATTTACGTGTTGCTGC 59.734 47.619 0.00 0.00 0.00 5.25
2135 3931 1.535462 GTGGATTTACGTGTTGCTGCT 59.465 47.619 0.00 0.00 0.00 4.24
2153 3949 4.687483 GCTGCTACTTCACAAATTTGCAAT 59.313 37.500 18.12 2.59 28.71 3.56
2154 3950 5.178067 GCTGCTACTTCACAAATTTGCAATT 59.822 36.000 18.12 8.05 28.71 2.32
2156 3952 6.514947 TGCTACTTCACAAATTTGCAATTCT 58.485 32.000 18.12 0.00 0.00 2.40
2157 3953 7.656412 TGCTACTTCACAAATTTGCAATTCTA 58.344 30.769 18.12 0.87 0.00 2.10
2158 3954 8.306038 TGCTACTTCACAAATTTGCAATTCTAT 58.694 29.630 18.12 0.00 0.00 1.98
2159 3955 8.801913 GCTACTTCACAAATTTGCAATTCTATC 58.198 33.333 18.12 0.00 0.00 2.08
2160 3956 9.844790 CTACTTCACAAATTTGCAATTCTATCA 57.155 29.630 18.12 0.00 0.00 2.15
2182 3986 4.164822 ACTGATGTTTATGTGCAGTTGC 57.835 40.909 0.00 0.00 36.49 4.17
2196 4000 1.860950 CAGTTGCCGATTCTACCATCG 59.139 52.381 0.00 0.00 44.78 3.84
2221 4025 4.021104 TCCTGTTCTCTGTCGATTGAATGT 60.021 41.667 0.00 0.00 0.00 2.71
2222 4026 4.092529 CCTGTTCTCTGTCGATTGAATGTG 59.907 45.833 0.00 0.00 0.00 3.21
2233 4037 0.112995 TTGAATGTGCCCTCCTGCTT 59.887 50.000 0.00 0.00 0.00 3.91
2240 4044 0.771127 TGCCCTCCTGCTTAAACACT 59.229 50.000 0.00 0.00 0.00 3.55
2241 4045 1.982226 TGCCCTCCTGCTTAAACACTA 59.018 47.619 0.00 0.00 0.00 2.74
2242 4046 2.373836 TGCCCTCCTGCTTAAACACTAA 59.626 45.455 0.00 0.00 0.00 2.24
2243 4047 3.010138 TGCCCTCCTGCTTAAACACTAAT 59.990 43.478 0.00 0.00 0.00 1.73
2254 4058 7.192913 TGCTTAAACACTAATTAATGCATCGG 58.807 34.615 0.00 0.00 29.65 4.18
2476 4280 8.404000 TGAAAGCATGCATTTACAAACAATTTT 58.596 25.926 21.98 5.98 0.00 1.82
2477 4281 9.235537 GAAAGCATGCATTTACAAACAATTTTT 57.764 25.926 21.98 5.29 0.00 1.94
3314 5119 2.968574 TGGATGGATGTCTAGAAGCTCC 59.031 50.000 0.00 1.71 0.00 4.70
3315 5120 3.238597 GGATGGATGTCTAGAAGCTCCT 58.761 50.000 14.37 0.00 0.00 3.69
3316 5121 3.258123 GGATGGATGTCTAGAAGCTCCTC 59.742 52.174 14.37 10.34 0.00 3.71
3317 5122 3.388552 TGGATGTCTAGAAGCTCCTCA 57.611 47.619 14.37 0.00 0.00 3.86
3318 5123 3.713003 TGGATGTCTAGAAGCTCCTCAA 58.287 45.455 14.37 0.00 0.00 3.02
3319 5124 4.096681 TGGATGTCTAGAAGCTCCTCAAA 58.903 43.478 14.37 0.00 0.00 2.69
3349 5154 2.563702 ACTGTGGCCTTTTTGCATTTG 58.436 42.857 3.32 0.00 0.00 2.32
3866 5674 0.690744 AAGGGCCATGTAAATGGGGC 60.691 55.000 14.08 6.71 45.67 5.80
3921 5729 5.639931 GGATAAGGAGTCAAACAACTCAGAC 59.360 44.000 6.40 0.00 46.15 3.51
4119 5928 0.326264 CACTGTTAGGCTGCCCTCTT 59.674 55.000 16.57 0.00 41.75 2.85
4120 5929 1.068121 ACTGTTAGGCTGCCCTCTTT 58.932 50.000 16.57 0.00 41.75 2.52
4121 5930 1.425448 ACTGTTAGGCTGCCCTCTTTT 59.575 47.619 16.57 0.00 41.75 2.27
4122 5931 2.158460 ACTGTTAGGCTGCCCTCTTTTT 60.158 45.455 16.57 0.00 41.75 1.94
4296 6123 5.465935 CGATTAGAGAAAGAGCAGGATACC 58.534 45.833 0.00 0.00 37.17 2.73
4397 6229 4.718774 ACCACAGATACCATCATTGTCTCT 59.281 41.667 0.00 0.00 0.00 3.10
4424 6256 9.897744 TGTTGAGATTTTGAGATAAACAATCAC 57.102 29.630 0.00 0.00 37.03 3.06
4430 6262 3.006940 TGAGATAAACAATCACCGTGCC 58.993 45.455 0.00 0.00 37.03 5.01
4431 6263 2.354821 GAGATAAACAATCACCGTGCCC 59.645 50.000 0.00 0.00 37.03 5.36
4472 6304 5.412526 CACGGTATGTGTTGTTACTTGTT 57.587 39.130 0.00 0.00 43.88 2.83
4473 6305 6.528014 CACGGTATGTGTTGTTACTTGTTA 57.472 37.500 0.00 0.00 43.88 2.41
4474 6306 6.586751 CACGGTATGTGTTGTTACTTGTTAG 58.413 40.000 0.00 0.00 43.88 2.34
4475 6307 6.201425 CACGGTATGTGTTGTTACTTGTTAGT 59.799 38.462 0.00 0.00 43.88 2.24
4476 6308 6.762661 ACGGTATGTGTTGTTACTTGTTAGTT 59.237 34.615 0.00 0.00 35.78 2.24
4477 6309 7.925483 ACGGTATGTGTTGTTACTTGTTAGTTA 59.075 33.333 0.00 0.00 35.78 2.24
4546 6378 0.455464 CACGCAACATGTGATGCTGG 60.455 55.000 17.93 8.03 41.00 4.85
4599 6450 3.003763 GCGTCCAGGGACCCTCTT 61.004 66.667 11.23 0.00 41.76 2.85
4631 6482 3.186613 GTGTAGAGAAAACAAGAAGGCGG 59.813 47.826 0.00 0.00 0.00 6.13
4646 6497 4.379243 CGGTGCCCAGAAGCGTCT 62.379 66.667 0.00 0.00 34.02 4.18
4666 6531 4.106925 GCCTGAGCCTGACCCTGG 62.107 72.222 0.00 0.00 0.00 4.45
4707 6572 0.446222 CGTGGTCGCGGAAATCAATT 59.554 50.000 6.13 0.00 0.00 2.32
4756 6625 3.125316 CGAGTTTGTCGGGTGAAAGTTA 58.875 45.455 0.00 0.00 45.58 2.24
4762 6631 3.199677 TGTCGGGTGAAAGTTAAGTGTG 58.800 45.455 0.00 0.00 0.00 3.82
4790 6659 7.601856 TGATGAGATTTGGTGGTGTTTTTATC 58.398 34.615 0.00 0.00 0.00 1.75
4999 6917 2.990066 ACTTGTATAGTGCAGCCTCC 57.010 50.000 0.00 0.00 35.19 4.30
5000 6918 1.486726 ACTTGTATAGTGCAGCCTCCC 59.513 52.381 0.00 0.00 35.19 4.30
5001 6919 1.765314 CTTGTATAGTGCAGCCTCCCT 59.235 52.381 0.00 0.00 0.00 4.20
5002 6920 2.767644 TGTATAGTGCAGCCTCCCTA 57.232 50.000 0.00 0.00 0.00 3.53
5003 6921 3.040655 TGTATAGTGCAGCCTCCCTAA 57.959 47.619 0.00 0.00 0.00 2.69
5004 6922 3.380393 TGTATAGTGCAGCCTCCCTAAA 58.620 45.455 0.00 0.00 0.00 1.85
5005 6923 3.778075 TGTATAGTGCAGCCTCCCTAAAA 59.222 43.478 0.00 0.00 0.00 1.52
5006 6924 2.781681 TAGTGCAGCCTCCCTAAAAC 57.218 50.000 0.00 0.00 0.00 2.43
5007 6925 1.068121 AGTGCAGCCTCCCTAAAACT 58.932 50.000 0.00 0.00 0.00 2.66
5008 6926 1.003696 AGTGCAGCCTCCCTAAAACTC 59.996 52.381 0.00 0.00 0.00 3.01
5009 6927 0.328258 TGCAGCCTCCCTAAAACTCC 59.672 55.000 0.00 0.00 0.00 3.85
5010 6928 0.621082 GCAGCCTCCCTAAAACTCCT 59.379 55.000 0.00 0.00 0.00 3.69
5011 6929 1.407575 GCAGCCTCCCTAAAACTCCTC 60.408 57.143 0.00 0.00 0.00 3.71
5012 6930 2.192263 CAGCCTCCCTAAAACTCCTCT 58.808 52.381 0.00 0.00 0.00 3.69
5013 6931 2.169561 CAGCCTCCCTAAAACTCCTCTC 59.830 54.545 0.00 0.00 0.00 3.20
5014 6932 1.487142 GCCTCCCTAAAACTCCTCTCC 59.513 57.143 0.00 0.00 0.00 3.71
5015 6933 2.894864 GCCTCCCTAAAACTCCTCTCCT 60.895 54.545 0.00 0.00 0.00 3.69
5046 6964 0.320374 TGACCCCGTGAGTGTGATTC 59.680 55.000 0.00 0.00 0.00 2.52
5075 7018 6.009589 TGTCATGGTGTCTATGGATGTTTTT 58.990 36.000 0.00 0.00 0.00 1.94
5076 7019 7.171653 TGTCATGGTGTCTATGGATGTTTTTA 58.828 34.615 0.00 0.00 0.00 1.52
5077 7020 7.833682 TGTCATGGTGTCTATGGATGTTTTTAT 59.166 33.333 0.00 0.00 0.00 1.40
5078 7021 8.686334 GTCATGGTGTCTATGGATGTTTTTATT 58.314 33.333 0.00 0.00 0.00 1.40
5079 7022 9.253832 TCATGGTGTCTATGGATGTTTTTATTT 57.746 29.630 0.00 0.00 0.00 1.40
5377 10647 5.011125 TGGAAACTTGAAGGTGTGTGAAAAA 59.989 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.996798 TCGGGTTCAGAACTGACTCT 58.003 50.000 13.13 0.00 39.66 3.24
85 86 0.868406 GCCTCAACGTTGGTCTTCAG 59.132 55.000 27.02 15.65 0.00 3.02
86 87 0.468226 AGCCTCAACGTTGGTCTTCA 59.532 50.000 27.02 6.69 0.00 3.02
87 88 1.264288 CAAGCCTCAACGTTGGTCTTC 59.736 52.381 27.02 12.37 0.00 2.87
88 89 1.134220 TCAAGCCTCAACGTTGGTCTT 60.134 47.619 27.02 21.74 0.00 3.01
89 90 0.468226 TCAAGCCTCAACGTTGGTCT 59.532 50.000 27.02 17.74 0.00 3.85
143 182 4.499188 CCATAAGACTACGCGAAGGAATCA 60.499 45.833 15.93 0.00 0.00 2.57
170 209 2.677848 GTTGGAGAAGGCCCCCTC 59.322 66.667 12.31 12.31 30.89 4.30
181 220 0.247736 CTCCCTCAAGGACGTTGGAG 59.752 60.000 7.96 3.66 40.93 3.86
208 247 1.007734 GCTTATCGGACATCGGCGA 60.008 57.895 13.87 13.87 39.77 5.54
211 250 0.038159 GAGGGCTTATCGGACATCGG 60.038 60.000 0.00 0.00 39.77 4.18
212 251 0.387367 CGAGGGCTTATCGGACATCG 60.387 60.000 0.00 0.00 41.89 3.84
213 252 0.959553 TCGAGGGCTTATCGGACATC 59.040 55.000 7.29 0.00 40.54 3.06
214 253 1.546476 GATCGAGGGCTTATCGGACAT 59.454 52.381 0.00 0.00 40.54 3.06
215 254 0.959553 GATCGAGGGCTTATCGGACA 59.040 55.000 0.00 0.00 40.54 4.02
216 255 0.244178 GGATCGAGGGCTTATCGGAC 59.756 60.000 0.00 3.23 40.54 4.79
217 256 0.178973 TGGATCGAGGGCTTATCGGA 60.179 55.000 0.00 0.00 40.54 4.55
218 257 0.038159 GTGGATCGAGGGCTTATCGG 60.038 60.000 0.00 0.00 40.54 4.18
219 258 0.387367 CGTGGATCGAGGGCTTATCG 60.387 60.000 0.00 1.77 42.86 2.92
220 259 0.674534 ACGTGGATCGAGGGCTTATC 59.325 55.000 2.46 0.00 42.86 1.75
221 260 1.120530 AACGTGGATCGAGGGCTTAT 58.879 50.000 2.46 0.00 42.86 1.73
222 261 0.174845 CAACGTGGATCGAGGGCTTA 59.825 55.000 2.46 0.00 42.86 3.09
223 262 1.079127 CAACGTGGATCGAGGGCTT 60.079 57.895 2.46 0.00 42.86 4.35
224 263 2.579201 CAACGTGGATCGAGGGCT 59.421 61.111 2.46 0.00 42.86 5.19
225 264 3.195698 GCAACGTGGATCGAGGGC 61.196 66.667 0.00 0.00 42.86 5.19
226 265 0.744414 AATGCAACGTGGATCGAGGG 60.744 55.000 0.00 0.00 42.86 4.30
227 266 0.374758 CAATGCAACGTGGATCGAGG 59.625 55.000 0.00 0.00 42.86 4.63
228 267 0.374758 CCAATGCAACGTGGATCGAG 59.625 55.000 8.40 0.00 42.86 4.04
229 268 1.643868 GCCAATGCAACGTGGATCGA 61.644 55.000 16.38 0.00 39.18 3.59
230 269 1.226379 GCCAATGCAACGTGGATCG 60.226 57.895 16.38 0.00 40.69 3.69
231 270 1.882311 TGCCAATGCAACGTGGATC 59.118 52.632 16.38 2.83 46.66 3.36
232 271 4.093966 TGCCAATGCAACGTGGAT 57.906 50.000 16.38 0.00 46.66 3.41
241 280 2.491152 CACCGGTGATGCCAATGC 59.509 61.111 31.31 0.00 36.97 3.56
242 281 2.491152 GCACCGGTGATGCCAATG 59.509 61.111 38.30 8.81 37.08 2.82
247 286 2.800736 GATTGGCACCGGTGATGC 59.199 61.111 38.30 22.72 42.62 3.91
248 287 1.705337 GACGATTGGCACCGGTGATG 61.705 60.000 38.30 20.22 0.00 3.07
249 288 1.449601 GACGATTGGCACCGGTGAT 60.450 57.895 38.30 22.53 0.00 3.06
250 289 2.047655 GACGATTGGCACCGGTGA 60.048 61.111 38.30 18.34 0.00 4.02
251 290 3.487202 CGACGATTGGCACCGGTG 61.487 66.667 30.66 30.66 0.00 4.94
252 291 3.927163 GACGACGATTGGCACCGGT 62.927 63.158 0.00 0.00 0.00 5.28
253 292 3.186047 GACGACGATTGGCACCGG 61.186 66.667 0.00 0.00 0.00 5.28
254 293 2.126071 AGACGACGATTGGCACCG 60.126 61.111 0.00 6.89 0.00 4.94
255 294 2.158959 CGAGACGACGATTGGCACC 61.159 63.158 0.00 0.00 35.09 5.01
256 295 2.789203 GCGAGACGACGATTGGCAC 61.789 63.158 0.00 0.00 35.09 5.01
257 296 2.506217 GCGAGACGACGATTGGCA 60.506 61.111 0.00 0.00 35.09 4.92
258 297 3.255379 GGCGAGACGACGATTGGC 61.255 66.667 0.00 2.24 35.09 4.52
280 319 3.564027 GCATGAGCGGTGCGTACC 61.564 66.667 13.35 13.35 43.89 3.34
281 320 2.509336 AGCATGAGCGGTGCGTAC 60.509 61.111 0.00 0.00 46.86 3.67
282 321 2.202743 GAGCATGAGCGGTGCGTA 60.203 61.111 0.00 0.00 46.86 4.42
290 329 2.191641 GACCCCTGGAGCATGAGC 59.808 66.667 0.00 0.00 42.56 4.26
291 330 2.503061 CGACCCCTGGAGCATGAG 59.497 66.667 0.00 0.00 0.00 2.90
292 331 3.083349 CCGACCCCTGGAGCATGA 61.083 66.667 0.00 0.00 0.00 3.07
293 332 4.864334 GCCGACCCCTGGAGCATG 62.864 72.222 0.00 0.00 0.00 4.06
302 341 4.660938 AAAGTGCAGGCCGACCCC 62.661 66.667 0.00 0.00 36.11 4.95
303 342 3.365265 CAAAGTGCAGGCCGACCC 61.365 66.667 0.00 0.00 36.11 4.46
304 343 3.365265 CCAAAGTGCAGGCCGACC 61.365 66.667 0.00 0.00 0.00 4.79
305 344 2.193536 AACCAAAGTGCAGGCCGAC 61.194 57.895 0.00 0.00 0.00 4.79
306 345 2.192861 CAACCAAAGTGCAGGCCGA 61.193 57.895 0.00 0.00 0.00 5.54
307 346 1.733402 TTCAACCAAAGTGCAGGCCG 61.733 55.000 0.00 0.00 0.00 6.13
308 347 0.249447 GTTCAACCAAAGTGCAGGCC 60.249 55.000 0.00 0.00 0.00 5.19
309 348 0.459489 TGTTCAACCAAAGTGCAGGC 59.541 50.000 0.00 0.00 0.00 4.85
310 349 1.536709 GCTGTTCAACCAAAGTGCAGG 60.537 52.381 0.00 0.00 0.00 4.85
311 350 1.536709 GGCTGTTCAACCAAAGTGCAG 60.537 52.381 0.00 0.00 0.00 4.41
312 351 0.459489 GGCTGTTCAACCAAAGTGCA 59.541 50.000 0.00 0.00 0.00 4.57
313 352 0.746659 AGGCTGTTCAACCAAAGTGC 59.253 50.000 0.00 0.00 0.00 4.40
314 353 1.536709 GCAGGCTGTTCAACCAAAGTG 60.537 52.381 17.16 0.00 0.00 3.16
315 354 0.746659 GCAGGCTGTTCAACCAAAGT 59.253 50.000 17.16 0.00 0.00 2.66
316 355 0.032540 GGCAGGCTGTTCAACCAAAG 59.967 55.000 17.16 0.00 0.00 2.77
317 356 1.733402 CGGCAGGCTGTTCAACCAAA 61.733 55.000 17.16 0.00 0.00 3.28
318 357 2.192861 CGGCAGGCTGTTCAACCAA 61.193 57.895 17.16 0.00 0.00 3.67
319 358 2.410322 ATCGGCAGGCTGTTCAACCA 62.410 55.000 17.16 0.19 0.00 3.67
320 359 1.675641 ATCGGCAGGCTGTTCAACC 60.676 57.895 17.16 7.20 0.00 3.77
321 360 1.503542 CATCGGCAGGCTGTTCAAC 59.496 57.895 17.16 0.00 0.00 3.18
322 361 1.675310 CCATCGGCAGGCTGTTCAA 60.675 57.895 17.16 0.00 0.00 2.69
323 362 2.046023 CCATCGGCAGGCTGTTCA 60.046 61.111 17.16 0.00 0.00 3.18
324 363 2.109126 GTCCATCGGCAGGCTGTTC 61.109 63.158 17.16 8.07 0.00 3.18
325 364 2.045926 GTCCATCGGCAGGCTGTT 60.046 61.111 17.16 0.00 0.00 3.16
326 365 3.320879 CTGTCCATCGGCAGGCTGT 62.321 63.158 17.16 0.00 0.00 4.40
327 366 2.513204 CTGTCCATCGGCAGGCTG 60.513 66.667 10.94 10.94 0.00 4.85
328 367 4.479993 GCTGTCCATCGGCAGGCT 62.480 66.667 0.00 0.00 46.78 4.58
334 373 2.390599 CGTTGGTGCTGTCCATCGG 61.391 63.158 14.19 0.00 43.02 4.18
335 374 3.027170 GCGTTGGTGCTGTCCATCG 62.027 63.158 16.26 16.26 46.79 3.84
336 375 2.870372 GCGTTGGTGCTGTCCATC 59.130 61.111 0.00 0.00 37.33 3.51
337 376 3.049674 CGCGTTGGTGCTGTCCAT 61.050 61.111 0.00 0.00 37.33 3.41
338 377 4.539083 ACGCGTTGGTGCTGTCCA 62.539 61.111 5.58 0.00 35.49 4.02
339 378 4.012895 CACGCGTTGGTGCTGTCC 62.013 66.667 10.22 0.00 0.00 4.02
340 379 4.012895 CCACGCGTTGGTGCTGTC 62.013 66.667 10.22 0.00 41.10 3.51
345 384 4.953868 TCGACCCACGCGTTGGTG 62.954 66.667 36.50 26.42 45.25 4.17
346 385 4.955774 GTCGACCCACGCGTTGGT 62.956 66.667 32.69 32.69 45.25 3.67
347 386 4.657824 AGTCGACCCACGCGTTGG 62.658 66.667 26.39 26.39 46.47 3.77
348 387 2.654912 GAAGTCGACCCACGCGTTG 61.655 63.158 10.22 6.05 42.26 4.10
349 388 2.355481 GAAGTCGACCCACGCGTT 60.355 61.111 10.22 0.00 42.26 4.84
350 389 4.695231 CGAAGTCGACCCACGCGT 62.695 66.667 13.01 5.58 43.02 6.01
351 390 4.394078 TCGAAGTCGACCCACGCG 62.394 66.667 13.01 3.53 44.22 6.01
352 391 2.504244 CTCGAAGTCGACCCACGC 60.504 66.667 13.01 0.00 44.22 5.34
353 392 1.859427 TTCCTCGAAGTCGACCCACG 61.859 60.000 13.01 15.22 44.22 4.94
354 393 0.109226 CTTCCTCGAAGTCGACCCAC 60.109 60.000 13.01 3.02 44.22 4.61
355 394 1.874345 GCTTCCTCGAAGTCGACCCA 61.874 60.000 13.01 0.00 44.22 4.51
356 395 1.153804 GCTTCCTCGAAGTCGACCC 60.154 63.158 13.01 3.54 44.22 4.46
357 396 1.153804 GGCTTCCTCGAAGTCGACC 60.154 63.158 13.01 0.00 44.22 4.79
358 397 4.480031 GGCTTCCTCGAAGTCGAC 57.520 61.111 7.70 7.70 44.22 4.20
361 400 2.070028 GACAAAGGCTTCCTCGAAGTC 58.930 52.381 0.00 0.00 43.71 3.01
362 401 1.270893 GGACAAAGGCTTCCTCGAAGT 60.271 52.381 0.00 0.00 41.27 3.01
363 402 1.443802 GGACAAAGGCTTCCTCGAAG 58.556 55.000 0.00 0.00 42.03 3.79
364 403 0.320421 CGGACAAAGGCTTCCTCGAA 60.320 55.000 0.00 0.00 30.89 3.71
365 404 1.292223 CGGACAAAGGCTTCCTCGA 59.708 57.895 0.00 0.00 30.89 4.04
366 405 2.391389 GCGGACAAAGGCTTCCTCG 61.391 63.158 0.00 4.13 30.89 4.63
367 406 0.889186 TTGCGGACAAAGGCTTCCTC 60.889 55.000 0.00 0.00 30.89 3.71
368 407 1.150536 TTGCGGACAAAGGCTTCCT 59.849 52.632 0.00 0.00 33.87 3.36
369 408 1.172812 AGTTGCGGACAAAGGCTTCC 61.173 55.000 0.00 0.00 37.58 3.46
370 409 0.668535 AAGTTGCGGACAAAGGCTTC 59.331 50.000 0.00 0.00 37.58 3.86
371 410 0.668535 GAAGTTGCGGACAAAGGCTT 59.331 50.000 0.00 0.00 37.58 4.35
372 411 0.465460 TGAAGTTGCGGACAAAGGCT 60.465 50.000 0.00 0.00 37.58 4.58
373 412 0.383949 TTGAAGTTGCGGACAAAGGC 59.616 50.000 0.00 0.00 37.58 4.35
374 413 1.001378 CCTTGAAGTTGCGGACAAAGG 60.001 52.381 0.00 0.00 37.58 3.11
375 414 1.001378 CCCTTGAAGTTGCGGACAAAG 60.001 52.381 0.00 0.00 37.58 2.77
376 415 1.028905 CCCTTGAAGTTGCGGACAAA 58.971 50.000 0.00 0.00 37.58 2.83
377 416 0.821711 CCCCTTGAAGTTGCGGACAA 60.822 55.000 0.00 0.00 0.00 3.18
378 417 1.228124 CCCCTTGAAGTTGCGGACA 60.228 57.895 0.00 0.00 0.00 4.02
379 418 1.072505 TCCCCTTGAAGTTGCGGAC 59.927 57.895 0.00 0.00 0.00 4.79
380 419 1.072505 GTCCCCTTGAAGTTGCGGA 59.927 57.895 0.00 0.00 0.00 5.54
381 420 0.609131 ATGTCCCCTTGAAGTTGCGG 60.609 55.000 0.00 0.00 0.00 5.69
382 421 1.737793 GTATGTCCCCTTGAAGTTGCG 59.262 52.381 0.00 0.00 0.00 4.85
383 422 2.790433 TGTATGTCCCCTTGAAGTTGC 58.210 47.619 0.00 0.00 0.00 4.17
384 423 3.191371 GCTTGTATGTCCCCTTGAAGTTG 59.809 47.826 0.00 0.00 0.00 3.16
385 424 3.421844 GCTTGTATGTCCCCTTGAAGTT 58.578 45.455 0.00 0.00 0.00 2.66
386 425 2.615493 CGCTTGTATGTCCCCTTGAAGT 60.615 50.000 0.00 0.00 0.00 3.01
387 426 2.009774 CGCTTGTATGTCCCCTTGAAG 58.990 52.381 0.00 0.00 0.00 3.02
388 427 1.626321 TCGCTTGTATGTCCCCTTGAA 59.374 47.619 0.00 0.00 0.00 2.69
389 428 1.066430 GTCGCTTGTATGTCCCCTTGA 60.066 52.381 0.00 0.00 0.00 3.02
390 429 1.369625 GTCGCTTGTATGTCCCCTTG 58.630 55.000 0.00 0.00 0.00 3.61
391 430 0.252197 GGTCGCTTGTATGTCCCCTT 59.748 55.000 0.00 0.00 0.00 3.95
392 431 1.623542 GGGTCGCTTGTATGTCCCCT 61.624 60.000 0.00 0.00 0.00 4.79
393 432 1.153229 GGGTCGCTTGTATGTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
394 433 1.520787 CGGGTCGCTTGTATGTCCC 60.521 63.158 0.00 0.00 0.00 4.46
395 434 1.520787 CCGGGTCGCTTGTATGTCC 60.521 63.158 0.00 0.00 0.00 4.02
396 435 0.804933 GACCGGGTCGCTTGTATGTC 60.805 60.000 12.12 0.00 0.00 3.06
397 436 1.217244 GACCGGGTCGCTTGTATGT 59.783 57.895 12.12 0.00 0.00 2.29
398 437 4.104143 GACCGGGTCGCTTGTATG 57.896 61.111 12.12 0.00 0.00 2.39
419 458 4.790962 ACATGGCGAGCTGGCTGG 62.791 66.667 20.62 12.15 45.14 4.85
420 459 3.506096 CACATGGCGAGCTGGCTG 61.506 66.667 20.62 13.96 45.14 4.85
454 493 4.549516 GTACTCGCCGCCGGTCTC 62.550 72.222 4.45 0.00 34.56 3.36
468 507 2.506438 GTCCAGCGTGCGAGGTAC 60.506 66.667 0.00 0.00 0.00 3.34
469 508 3.755628 GGTCCAGCGTGCGAGGTA 61.756 66.667 0.00 0.00 0.00 3.08
476 515 4.803426 GGAGCTCGGTCCAGCGTG 62.803 72.222 7.83 0.00 44.82 5.34
486 525 2.507992 CAGCTGTTCCGGAGCTCG 60.508 66.667 19.73 11.30 45.24 5.03
487 526 2.817396 GCAGCTGTTCCGGAGCTC 60.817 66.667 19.73 4.71 45.24 4.09
489 528 4.742201 TCGCAGCTGTTCCGGAGC 62.742 66.667 16.64 11.99 36.65 4.70
490 529 2.507992 CTCGCAGCTGTTCCGGAG 60.508 66.667 16.64 10.43 0.00 4.63
491 530 4.069232 CCTCGCAGCTGTTCCGGA 62.069 66.667 16.64 0.00 0.00 5.14
504 543 3.966026 GACTTCACGGACGCCCTCG 62.966 68.421 0.00 0.00 42.43 4.63
505 544 2.126031 GACTTCACGGACGCCCTC 60.126 66.667 0.00 0.00 0.00 4.30
506 545 3.692406 GGACTTCACGGACGCCCT 61.692 66.667 0.00 0.00 0.00 5.19
507 546 3.934391 CTGGACTTCACGGACGCCC 62.934 68.421 0.00 0.00 0.00 6.13
508 547 2.432628 CTGGACTTCACGGACGCC 60.433 66.667 0.00 0.00 0.00 5.68
509 548 2.432628 CCTGGACTTCACGGACGC 60.433 66.667 0.00 0.00 0.00 5.19
510 549 2.432628 GCCTGGACTTCACGGACG 60.433 66.667 0.00 0.00 0.00 4.79
511 550 2.047179 GGCCTGGACTTCACGGAC 60.047 66.667 0.00 0.00 0.00 4.79
512 551 2.203788 AGGCCTGGACTTCACGGA 60.204 61.111 3.11 0.00 0.00 4.69
513 552 2.046892 CAGGCCTGGACTTCACGG 60.047 66.667 26.14 0.00 0.00 4.94
532 571 4.570663 GACATCGGGGGCTCGACG 62.571 72.222 5.73 1.15 42.21 5.12
585 624 2.745515 AGCAAGACGTAGGGTTCTTC 57.254 50.000 0.00 0.00 0.00 2.87
600 1002 8.471609 ACATCATCATCAATACAATCAAAGCAA 58.528 29.630 0.00 0.00 0.00 3.91
652 1057 5.455899 GGGTTAGGTCTCTCCTTACGATCTA 60.456 48.000 0.00 0.00 45.67 1.98
736 1785 0.975887 TGGCATTTGGGAGCTTTTCC 59.024 50.000 0.00 0.00 46.00 3.13
744 1793 1.076841 TCATGGACTTGGCATTTGGGA 59.923 47.619 0.00 0.00 0.00 4.37
753 1802 2.362736 CACTCATGGTCATGGACTTGG 58.637 52.381 10.61 0.00 39.24 3.61
762 1811 1.913262 ACTCGCCCACTCATGGTCA 60.913 57.895 0.00 0.00 45.66 4.02
764 1813 1.480212 TTCACTCGCCCACTCATGGT 61.480 55.000 0.00 0.00 45.66 3.55
774 1823 1.398390 GTGGTCATTCATTCACTCGCC 59.602 52.381 0.00 0.00 0.00 5.54
805 1866 2.067091 GATGGTCCACGCATGGCATG 62.067 60.000 22.99 22.99 46.80 4.06
806 1867 1.825191 GATGGTCCACGCATGGCAT 60.825 57.895 0.00 0.00 46.80 4.40
807 1868 2.438254 GATGGTCCACGCATGGCA 60.438 61.111 0.00 0.00 46.80 4.92
808 1869 3.211963 GGATGGTCCACGCATGGC 61.212 66.667 0.00 0.00 46.80 4.40
822 1893 1.158007 GGGAGAGGAGAGGAGAGGAT 58.842 60.000 0.00 0.00 0.00 3.24
823 1894 0.047176 AGGGAGAGGAGAGGAGAGGA 59.953 60.000 0.00 0.00 0.00 3.71
824 1895 0.478507 GAGGGAGAGGAGAGGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
826 1897 0.047176 AGGAGGGAGAGGAGAGGAGA 59.953 60.000 0.00 0.00 0.00 3.71
827 1898 0.933700 AAGGAGGGAGAGGAGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
828 1899 1.007721 CAAAGGAGGGAGAGGAGAGGA 59.992 57.143 0.00 0.00 0.00 3.71
908 2001 4.536090 ACTCAGAGAGAAGAGAGGAGAGAA 59.464 45.833 3.79 0.00 35.83 2.87
973 2075 3.030308 CGATCCCGACCGCAATCG 61.030 66.667 9.14 9.14 41.89 3.34
1144 2258 3.532155 GAGGCGGGTGAGCTCGAT 61.532 66.667 9.64 0.00 42.12 3.59
1190 2304 1.227943 ATCGGATCGGCAATGGGTG 60.228 57.895 0.00 0.00 0.00 4.61
1191 2305 1.071471 GATCGGATCGGCAATGGGT 59.929 57.895 1.62 0.00 0.00 4.51
1235 2374 1.767759 ATCCAAAGGCGGAATCTTGG 58.232 50.000 0.00 0.00 38.95 3.61
1254 2393 0.690192 TCCAATCCGTTGAGCTCCAA 59.310 50.000 12.15 2.77 37.53 3.53
1255 2394 0.911769 ATCCAATCCGTTGAGCTCCA 59.088 50.000 12.15 0.00 37.53 3.86
1256 2395 2.044123 AATCCAATCCGTTGAGCTCC 57.956 50.000 12.15 0.00 37.53 4.70
1257 2396 2.098117 CCAAATCCAATCCGTTGAGCTC 59.902 50.000 6.82 6.82 37.53 4.09
1259 2398 1.818674 ACCAAATCCAATCCGTTGAGC 59.181 47.619 0.00 0.00 37.53 4.26
1261 2400 1.543802 GCACCAAATCCAATCCGTTGA 59.456 47.619 0.00 0.00 37.53 3.18
1262 2401 1.545582 AGCACCAAATCCAATCCGTTG 59.454 47.619 0.00 0.00 35.05 4.10
1263 2402 1.923356 AGCACCAAATCCAATCCGTT 58.077 45.000 0.00 0.00 0.00 4.44
1264 2403 1.545582 CAAGCACCAAATCCAATCCGT 59.454 47.619 0.00 0.00 0.00 4.69
1265 2404 1.736696 GCAAGCACCAAATCCAATCCG 60.737 52.381 0.00 0.00 0.00 4.18
1266 2405 1.551883 AGCAAGCACCAAATCCAATCC 59.448 47.619 0.00 0.00 0.00 3.01
1267 2406 2.997986 CAAGCAAGCACCAAATCCAATC 59.002 45.455 0.00 0.00 0.00 2.67
1268 2407 2.872842 GCAAGCAAGCACCAAATCCAAT 60.873 45.455 0.00 0.00 0.00 3.16
1269 2408 1.540797 GCAAGCAAGCACCAAATCCAA 60.541 47.619 0.00 0.00 0.00 3.53
1270 2409 0.033781 GCAAGCAAGCACCAAATCCA 59.966 50.000 0.00 0.00 0.00 3.41
1391 2547 2.916269 AGGAAAGGAAAAGAGAGGGAGG 59.084 50.000 0.00 0.00 0.00 4.30
1407 2622 1.283029 CTGGAGCTGGATGGAAGGAAA 59.717 52.381 0.00 0.00 0.00 3.13
1409 2624 0.984961 CCTGGAGCTGGATGGAAGGA 60.985 60.000 0.00 0.00 0.00 3.36
1411 2626 1.153005 GCCTGGAGCTGGATGGAAG 60.153 63.158 0.00 0.00 38.99 3.46
1412 2627 3.001514 GCCTGGAGCTGGATGGAA 58.998 61.111 0.00 0.00 38.99 3.53
1430 2645 8.167392 ACTCCTATCCTACTAGAGTACGTAGTA 58.833 40.741 2.11 14.10 45.11 1.82
1432 2647 7.466746 ACTCCTATCCTACTAGAGTACGTAG 57.533 44.000 0.00 4.30 34.34 3.51
1433 2648 8.387039 TCTACTCCTATCCTACTAGAGTACGTA 58.613 40.741 0.00 0.00 0.00 3.57
1434 2649 7.237982 TCTACTCCTATCCTACTAGAGTACGT 58.762 42.308 0.00 0.00 0.00 3.57
1435 2650 7.701539 TCTACTCCTATCCTACTAGAGTACG 57.298 44.000 0.00 0.00 0.00 3.67
1436 2651 9.312904 TCTTCTACTCCTATCCTACTAGAGTAC 57.687 40.741 0.00 0.00 0.00 2.73
1437 2652 9.895507 TTCTTCTACTCCTATCCTACTAGAGTA 57.104 37.037 0.00 0.00 0.00 2.59
1438 2653 8.802057 TTCTTCTACTCCTATCCTACTAGAGT 57.198 38.462 0.00 0.00 0.00 3.24
1441 2656 9.802039 ACAATTCTTCTACTCCTATCCTACTAG 57.198 37.037 0.00 0.00 0.00 2.57
1442 2657 9.575868 CACAATTCTTCTACTCCTATCCTACTA 57.424 37.037 0.00 0.00 0.00 1.82
1443 2658 7.014808 GCACAATTCTTCTACTCCTATCCTACT 59.985 40.741 0.00 0.00 0.00 2.57
1444 2659 7.149307 GCACAATTCTTCTACTCCTATCCTAC 58.851 42.308 0.00 0.00 0.00 3.18
1445 2660 6.839134 TGCACAATTCTTCTACTCCTATCCTA 59.161 38.462 0.00 0.00 0.00 2.94
1449 2664 6.798427 TCTGCACAATTCTTCTACTCCTAT 57.202 37.500 0.00 0.00 0.00 2.57
1453 2668 4.505922 CGGATCTGCACAATTCTTCTACTC 59.494 45.833 0.00 0.00 0.00 2.59
1461 2676 1.528586 CGGATCGGATCTGCACAATTC 59.471 52.381 16.96 0.00 0.00 2.17
1505 2720 1.400142 TCGTTTTGGTTGTGTGCTCAG 59.600 47.619 0.00 0.00 0.00 3.35
1506 2721 1.131504 GTCGTTTTGGTTGTGTGCTCA 59.868 47.619 0.00 0.00 0.00 4.26
1508 2723 1.132262 CAGTCGTTTTGGTTGTGTGCT 59.868 47.619 0.00 0.00 0.00 4.40
1509 2724 1.544686 CAGTCGTTTTGGTTGTGTGC 58.455 50.000 0.00 0.00 0.00 4.57
1510 2725 1.544686 GCAGTCGTTTTGGTTGTGTG 58.455 50.000 0.00 0.00 0.00 3.82
1511 2726 0.454196 GGCAGTCGTTTTGGTTGTGT 59.546 50.000 0.00 0.00 0.00 3.72
1512 2727 0.738389 AGGCAGTCGTTTTGGTTGTG 59.262 50.000 0.00 0.00 0.00 3.33
1513 2728 1.134175 CAAGGCAGTCGTTTTGGTTGT 59.866 47.619 0.00 0.00 0.00 3.32
1514 2729 1.403679 TCAAGGCAGTCGTTTTGGTTG 59.596 47.619 0.00 0.00 0.00 3.77
1515 2730 1.757682 TCAAGGCAGTCGTTTTGGTT 58.242 45.000 0.00 0.00 0.00 3.67
1516 2731 1.981256 ATCAAGGCAGTCGTTTTGGT 58.019 45.000 0.00 0.00 0.00 3.67
1517 2732 3.369546 AAATCAAGGCAGTCGTTTTGG 57.630 42.857 0.00 0.00 0.00 3.28
1540 2781 1.277842 TGCAGATGGAGCTTTAACCGA 59.722 47.619 0.00 0.00 0.00 4.69
1541 2782 1.737838 TGCAGATGGAGCTTTAACCG 58.262 50.000 0.00 0.00 0.00 4.44
1543 2784 3.243002 GCAGATGCAGATGGAGCTTTAAC 60.243 47.826 0.00 0.00 41.59 2.01
1545 2786 2.569059 GCAGATGCAGATGGAGCTTTA 58.431 47.619 0.00 0.00 41.59 1.85
1564 2814 3.988379 TGTCAAGGTTCAACAAGATGC 57.012 42.857 0.00 0.00 0.00 3.91
1565 2815 7.775397 ATTTTTGTCAAGGTTCAACAAGATG 57.225 32.000 0.00 0.00 34.64 2.90
1566 2816 9.480053 CATATTTTTGTCAAGGTTCAACAAGAT 57.520 29.630 0.00 0.00 34.64 2.40
1567 2817 7.437862 GCATATTTTTGTCAAGGTTCAACAAGA 59.562 33.333 0.00 0.00 34.64 3.02
1568 2818 7.224362 TGCATATTTTTGTCAAGGTTCAACAAG 59.776 33.333 0.00 0.00 34.64 3.16
1569 2819 7.010923 GTGCATATTTTTGTCAAGGTTCAACAA 59.989 33.333 0.00 0.00 0.00 2.83
1570 2820 6.478344 GTGCATATTTTTGTCAAGGTTCAACA 59.522 34.615 0.00 0.00 0.00 3.33
1571 2821 6.478344 TGTGCATATTTTTGTCAAGGTTCAAC 59.522 34.615 0.00 0.00 0.00 3.18
1572 2822 6.478344 GTGTGCATATTTTTGTCAAGGTTCAA 59.522 34.615 0.00 0.00 0.00 2.69
1609 2883 3.085533 ACTAGTGACTAGTGAGCAGGTG 58.914 50.000 23.37 0.00 44.47 4.00
1624 2898 7.548196 TGTAAGAAGGTTTTTGACACTAGTG 57.452 36.000 21.44 21.44 0.00 2.74
1629 2961 7.812669 CCCATAATGTAAGAAGGTTTTTGACAC 59.187 37.037 0.00 0.00 0.00 3.67
1640 2972 5.630415 TGTCCCTCCCATAATGTAAGAAG 57.370 43.478 0.00 0.00 0.00 2.85
1641 2973 6.590656 ATTGTCCCTCCCATAATGTAAGAA 57.409 37.500 0.00 0.00 0.00 2.52
1647 2979 5.069516 CAGGAAAATTGTCCCTCCCATAATG 59.930 44.000 11.33 0.00 38.59 1.90
1651 2983 2.654385 TCAGGAAAATTGTCCCTCCCAT 59.346 45.455 11.33 0.00 38.59 4.00
1657 2989 3.554960 GGCAAAGTCAGGAAAATTGTCCC 60.555 47.826 11.33 0.00 38.59 4.46
1658 2990 3.321968 AGGCAAAGTCAGGAAAATTGTCC 59.678 43.478 6.55 6.55 38.03 4.02
1661 2993 4.917415 CGTAAGGCAAAGTCAGGAAAATTG 59.083 41.667 0.00 0.00 0.00 2.32
1662 2994 4.558697 GCGTAAGGCAAAGTCAGGAAAATT 60.559 41.667 0.00 0.00 42.87 1.82
1663 2995 3.057526 GCGTAAGGCAAAGTCAGGAAAAT 60.058 43.478 0.00 0.00 42.87 1.82
1664 2996 2.292292 GCGTAAGGCAAAGTCAGGAAAA 59.708 45.455 0.00 0.00 42.87 2.29
1665 2997 1.877443 GCGTAAGGCAAAGTCAGGAAA 59.123 47.619 0.00 0.00 42.87 3.13
1797 3429 8.031864 TGCTCTGTTTCTCAAGATAAGAAGTAG 58.968 37.037 0.00 0.00 34.42 2.57
1798 3430 7.896811 TGCTCTGTTTCTCAAGATAAGAAGTA 58.103 34.615 0.00 0.00 34.42 2.24
1799 3431 6.763355 TGCTCTGTTTCTCAAGATAAGAAGT 58.237 36.000 0.00 0.00 34.42 3.01
1800 3432 6.183360 GCTGCTCTGTTTCTCAAGATAAGAAG 60.183 42.308 0.00 0.00 34.42 2.85
1803 3435 5.063691 CAGCTGCTCTGTTTCTCAAGATAAG 59.936 44.000 0.00 0.00 38.02 1.73
1947 3580 1.097547 GGGGCATGTCATCGTCCTTG 61.098 60.000 0.00 0.00 0.00 3.61
1965 3598 2.455565 AAGGATGGCCTCGATGGGG 61.456 63.158 3.32 0.00 46.28 4.96
2039 3672 2.149578 CAGGACAAGCTAGCATATGGC 58.850 52.381 18.83 14.55 45.30 4.40
2040 3673 3.070734 AGACAGGACAAGCTAGCATATGG 59.929 47.826 18.83 3.58 0.00 2.74
2041 3674 4.333913 AGACAGGACAAGCTAGCATATG 57.666 45.455 18.83 14.84 0.00 1.78
2044 3677 2.304180 ACAAGACAGGACAAGCTAGCAT 59.696 45.455 18.83 0.65 0.00 3.79
2045 3678 1.694150 ACAAGACAGGACAAGCTAGCA 59.306 47.619 18.83 0.00 0.00 3.49
2046 3679 2.464157 ACAAGACAGGACAAGCTAGC 57.536 50.000 6.62 6.62 0.00 3.42
2047 3680 5.059833 AGAAAACAAGACAGGACAAGCTAG 58.940 41.667 0.00 0.00 0.00 3.42
2048 3681 5.036117 AGAAAACAAGACAGGACAAGCTA 57.964 39.130 0.00 0.00 0.00 3.32
2049 3682 3.879892 GAGAAAACAAGACAGGACAAGCT 59.120 43.478 0.00 0.00 0.00 3.74
2051 3684 5.731686 GCAAGAGAAAACAAGACAGGACAAG 60.732 44.000 0.00 0.00 0.00 3.16
2052 3685 4.096382 GCAAGAGAAAACAAGACAGGACAA 59.904 41.667 0.00 0.00 0.00 3.18
2053 3686 3.627577 GCAAGAGAAAACAAGACAGGACA 59.372 43.478 0.00 0.00 0.00 4.02
2054 3687 3.627577 TGCAAGAGAAAACAAGACAGGAC 59.372 43.478 0.00 0.00 0.00 3.85
2055 3688 3.879295 CTGCAAGAGAAAACAAGACAGGA 59.121 43.478 0.00 0.00 34.07 3.86
2056 3689 3.629398 ACTGCAAGAGAAAACAAGACAGG 59.371 43.478 0.00 0.00 37.43 4.00
2057 3690 4.574013 AGACTGCAAGAGAAAACAAGACAG 59.426 41.667 0.00 0.00 37.43 3.51
2100 3733 0.323629 TCCACATCTGGAAACCGACC 59.676 55.000 0.00 0.00 44.26 4.79
2101 3734 3.927555 TCCACATCTGGAAACCGAC 57.072 52.632 0.00 0.00 44.26 4.79
2133 3929 8.693542 ATAGAATTGCAAATTTGTGAAGTAGC 57.306 30.769 19.03 3.19 0.00 3.58
2134 3930 9.844790 TGATAGAATTGCAAATTTGTGAAGTAG 57.155 29.630 19.03 0.00 0.00 2.57
2153 3949 7.607607 ACTGCACATAAACATCAGTTGATAGAA 59.392 33.333 0.00 0.00 38.17 2.10
2154 3950 7.105588 ACTGCACATAAACATCAGTTGATAGA 58.894 34.615 0.00 0.00 38.17 1.98
2156 3952 7.686438 AACTGCACATAAACATCAGTTGATA 57.314 32.000 5.29 0.00 43.72 2.15
2157 3953 6.579666 AACTGCACATAAACATCAGTTGAT 57.420 33.333 5.29 0.00 43.72 2.57
2160 3956 4.549458 GCAACTGCACATAAACATCAGTT 58.451 39.130 0.00 0.00 45.53 3.16
2196 4000 2.231478 TCAATCGACAGAGAACAGGACC 59.769 50.000 0.00 0.00 0.00 4.46
2221 4025 0.771127 AGTGTTTAAGCAGGAGGGCA 59.229 50.000 0.00 0.00 35.83 5.36
2222 4026 2.781681 TAGTGTTTAAGCAGGAGGGC 57.218 50.000 0.00 0.00 0.00 5.19
2233 4037 9.347934 CAAAACCGATGCATTAATTAGTGTTTA 57.652 29.630 0.00 0.00 0.00 2.01
2240 4044 6.529829 GCTCAACAAAACCGATGCATTAATTA 59.470 34.615 0.00 0.00 0.00 1.40
2241 4045 5.348451 GCTCAACAAAACCGATGCATTAATT 59.652 36.000 0.00 0.00 0.00 1.40
2242 4046 4.864247 GCTCAACAAAACCGATGCATTAAT 59.136 37.500 0.00 0.00 0.00 1.40
2243 4047 4.233789 GCTCAACAAAACCGATGCATTAA 58.766 39.130 0.00 0.00 0.00 1.40
2254 4058 5.257864 GTTTTGCAATCTGCTCAACAAAAC 58.742 37.500 0.00 11.83 45.31 2.43
2277 4081 3.057969 TGCCCTGTTGTCATCTTGTAG 57.942 47.619 0.00 0.00 0.00 2.74
2476 4280 0.534873 TCGCATGCCACAGCTAGTAA 59.465 50.000 13.15 0.00 40.80 2.24
2477 4281 0.752658 ATCGCATGCCACAGCTAGTA 59.247 50.000 13.15 0.00 40.80 1.82
2511 4315 4.884164 AGAACACCAAAGAAGGAAGTCTTG 59.116 41.667 0.00 0.00 37.90 3.02
2512 4316 5.117406 AGAACACCAAAGAAGGAAGTCTT 57.883 39.130 0.00 0.00 39.60 3.01
2702 4506 2.485814 GGAGTTCAAGTCAAGCCATCAC 59.514 50.000 0.00 0.00 0.00 3.06
3314 5119 3.243201 GCCACAGTTCCTTTGAGTTTGAG 60.243 47.826 0.00 0.00 0.00 3.02
3315 5120 2.687935 GCCACAGTTCCTTTGAGTTTGA 59.312 45.455 0.00 0.00 0.00 2.69
3316 5121 2.223805 GGCCACAGTTCCTTTGAGTTTG 60.224 50.000 0.00 0.00 0.00 2.93
3317 5122 2.031870 GGCCACAGTTCCTTTGAGTTT 58.968 47.619 0.00 0.00 0.00 2.66
3318 5123 1.215423 AGGCCACAGTTCCTTTGAGTT 59.785 47.619 5.01 0.00 0.00 3.01
3319 5124 0.846693 AGGCCACAGTTCCTTTGAGT 59.153 50.000 5.01 0.00 0.00 3.41
3349 5154 6.203145 GGTTTAGTCCAGTCAAAGAAGAAGAC 59.797 42.308 0.00 0.00 0.00 3.01
3578 5386 6.003234 ACTTGTCCTGAGATATTCGATACG 57.997 41.667 0.00 0.00 0.00 3.06
3783 5591 1.586028 CCCCTTTGCATGGTTCACG 59.414 57.895 0.00 0.00 0.00 4.35
3866 5674 2.034179 TCGGTAGATACGTTCATGCCAG 59.966 50.000 0.00 0.00 0.00 4.85
3921 5729 6.199908 CAGATGTAAATTCACTAGGCTTCTCG 59.800 42.308 0.00 0.00 0.00 4.04
4296 6123 1.172180 TGCCGAACCTTCTTGCCTTG 61.172 55.000 0.00 0.00 0.00 3.61
4424 6256 2.663852 AGTTCGAAACGGGCACGG 60.664 61.111 15.46 0.00 46.48 4.94
4430 6262 1.992170 CCTAGTGGAGTTCGAAACGG 58.008 55.000 0.00 0.00 36.23 4.44
4431 6263 1.336517 TGCCTAGTGGAGTTCGAAACG 60.337 52.381 0.00 0.00 36.23 3.60
4468 6300 9.930693 ACCACACAAAATTCTTTTAACTAACAA 57.069 25.926 0.00 0.00 0.00 2.83
4469 6301 9.360093 CACCACACAAAATTCTTTTAACTAACA 57.640 29.630 0.00 0.00 0.00 2.41
4470 6302 9.361315 ACACCACACAAAATTCTTTTAACTAAC 57.639 29.630 0.00 0.00 0.00 2.34
4473 6305 9.744468 GATACACCACACAAAATTCTTTTAACT 57.256 29.630 0.00 0.00 0.00 2.24
4474 6306 9.744468 AGATACACCACACAAAATTCTTTTAAC 57.256 29.630 0.00 0.00 0.00 2.01
4475 6307 9.959749 GAGATACACCACACAAAATTCTTTTAA 57.040 29.630 0.00 0.00 0.00 1.52
4476 6308 9.126151 TGAGATACACCACACAAAATTCTTTTA 57.874 29.630 0.00 0.00 0.00 1.52
4477 6309 8.006298 TGAGATACACCACACAAAATTCTTTT 57.994 30.769 0.00 0.00 0.00 2.27
4492 6324 1.410882 GGCAGAGTCCTGAGATACACC 59.589 57.143 0.00 0.00 43.02 4.16
4546 6378 2.604046 ACACGAGGGATGCTTCATAC 57.396 50.000 1.64 0.00 0.00 2.39
4599 6450 5.972935 TGTTTTCTCTACACACAAGTCAGA 58.027 37.500 0.00 0.00 0.00 3.27
4637 6488 1.889454 CTCAGGCTCAGACGCTTCT 59.111 57.895 0.00 0.00 0.00 2.85
4638 6489 1.809209 GCTCAGGCTCAGACGCTTC 60.809 63.158 0.00 0.00 35.22 3.86
4639 6490 2.264166 GCTCAGGCTCAGACGCTT 59.736 61.111 0.00 0.00 35.22 4.68
4640 6491 3.768922 GGCTCAGGCTCAGACGCT 61.769 66.667 0.00 0.00 38.73 5.07
4642 6493 2.183811 CAGGCTCAGGCTCAGACG 59.816 66.667 0.00 0.00 35.88 4.18
4643 6494 1.217779 GTCAGGCTCAGGCTCAGAC 59.782 63.158 0.00 0.00 35.88 3.51
4644 6495 1.986757 GGTCAGGCTCAGGCTCAGA 60.987 63.158 0.00 0.00 35.88 3.27
4646 6497 3.005539 GGGTCAGGCTCAGGCTCA 61.006 66.667 0.00 0.00 35.88 4.26
4666 6531 2.548904 AGATGTAGTAGGCACGATCGAC 59.451 50.000 24.34 13.18 0.00 4.20
4724 6593 1.007336 ACAAACTCGTGTCGCCGATC 61.007 55.000 0.00 0.00 36.08 3.69
4725 6594 1.006571 ACAAACTCGTGTCGCCGAT 60.007 52.632 0.00 0.00 36.08 4.18
4726 6595 1.659335 GACAAACTCGTGTCGCCGA 60.659 57.895 0.00 0.00 38.68 5.54
4727 6596 2.844146 GACAAACTCGTGTCGCCG 59.156 61.111 0.00 0.00 38.68 6.46
4756 6625 4.279169 CACCAAATCTCATCAACCACACTT 59.721 41.667 0.00 0.00 0.00 3.16
4762 6631 3.157087 ACACCACCAAATCTCATCAACC 58.843 45.455 0.00 0.00 0.00 3.77
4995 6913 3.123392 AGGAGAGGAGTTTTAGGGAGG 57.877 52.381 0.00 0.00 0.00 4.30
4996 6914 4.097418 TCAAGGAGAGGAGTTTTAGGGAG 58.903 47.826 0.00 0.00 0.00 4.30
4997 6915 4.141990 TCAAGGAGAGGAGTTTTAGGGA 57.858 45.455 0.00 0.00 0.00 4.20
4998 6916 6.561519 TTATCAAGGAGAGGAGTTTTAGGG 57.438 41.667 0.00 0.00 0.00 3.53
4999 6917 6.540551 GCTTTATCAAGGAGAGGAGTTTTAGG 59.459 42.308 0.00 0.00 0.00 2.69
5000 6918 6.540551 GGCTTTATCAAGGAGAGGAGTTTTAG 59.459 42.308 0.00 0.00 0.00 1.85
5001 6919 6.415573 GGCTTTATCAAGGAGAGGAGTTTTA 58.584 40.000 0.00 0.00 0.00 1.52
5002 6920 5.257262 GGCTTTATCAAGGAGAGGAGTTTT 58.743 41.667 0.00 0.00 0.00 2.43
5003 6921 4.624125 CGGCTTTATCAAGGAGAGGAGTTT 60.624 45.833 0.00 0.00 0.00 2.66
5004 6922 3.118592 CGGCTTTATCAAGGAGAGGAGTT 60.119 47.826 0.00 0.00 0.00 3.01
5005 6923 2.432510 CGGCTTTATCAAGGAGAGGAGT 59.567 50.000 0.00 0.00 0.00 3.85
5006 6924 2.432510 ACGGCTTTATCAAGGAGAGGAG 59.567 50.000 0.00 0.00 0.00 3.69
5007 6925 2.168521 CACGGCTTTATCAAGGAGAGGA 59.831 50.000 0.00 0.00 0.00 3.71
5008 6926 2.168521 TCACGGCTTTATCAAGGAGAGG 59.831 50.000 0.00 0.00 0.00 3.69
5009 6927 3.190874 GTCACGGCTTTATCAAGGAGAG 58.809 50.000 0.00 0.00 0.00 3.20
5010 6928 2.093658 GGTCACGGCTTTATCAAGGAGA 60.094 50.000 0.00 0.00 0.00 3.71
5011 6929 2.280628 GGTCACGGCTTTATCAAGGAG 58.719 52.381 0.00 0.00 0.00 3.69
5012 6930 1.065709 GGGTCACGGCTTTATCAAGGA 60.066 52.381 0.00 0.00 0.00 3.36
5013 6931 1.379527 GGGTCACGGCTTTATCAAGG 58.620 55.000 0.00 0.00 0.00 3.61
5014 6932 1.379527 GGGGTCACGGCTTTATCAAG 58.620 55.000 0.00 0.00 0.00 3.02
5015 6933 0.391927 CGGGGTCACGGCTTTATCAA 60.392 55.000 0.00 0.00 0.00 2.57
5046 6964 3.448660 TCCATAGACACCATGACAGACAG 59.551 47.826 0.00 0.00 0.00 3.51
5103 7049 1.478105 GGGATGCAACCTCCACAATTC 59.522 52.381 13.30 0.00 34.24 2.17
5377 10647 6.627395 TTGTTGTTGAATGTAGACGGATTT 57.373 33.333 0.00 0.00 0.00 2.17
5490 10768 2.481449 GCGAACGACAGGGTGATAGATT 60.481 50.000 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.