Multiple sequence alignment - TraesCS5A01G558700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G558700 chr5A 100.000 5104 0 0 1 5104 709483133 709478030 0.000000e+00 9426
1 TraesCS5A01G558700 chr5A 98.878 4633 49 3 82 4712 556697028 556701659 0.000000e+00 8264
2 TraesCS5A01G558700 chr5A 98.120 4627 78 4 79 4704 465387593 465392211 0.000000e+00 8054
3 TraesCS5A01G558700 chr5A 98.816 3715 41 3 82 3795 556701943 556705655 0.000000e+00 6613
4 TraesCS5A01G558700 chr5A 99.010 909 8 1 3796 4703 556705684 556706592 0.000000e+00 1628
5 TraesCS5A01G558700 chr7A 98.745 4623 52 4 82 4703 60711667 60707050 0.000000e+00 8211
6 TraesCS5A01G558700 chr7A 98.464 4623 68 3 82 4703 689399923 689395303 0.000000e+00 8141
7 TraesCS5A01G558700 chr7A 96.970 231 7 0 4704 4934 710491166 710491396 6.200000e-104 388
8 TraesCS5A01G558700 chr7A 96.552 232 8 0 4704 4935 4502789 4502558 8.020000e-103 385
9 TraesCS5A01G558700 chr7A 98.765 81 1 0 1 81 692334572 692334492 1.480000e-30 145
10 TraesCS5A01G558700 chr1D 95.362 3407 113 21 1309 4703 432575929 432579302 0.000000e+00 5374
11 TraesCS5A01G558700 chr4A 89.819 3045 254 36 902 3912 519797027 519800049 0.000000e+00 3855
12 TraesCS5A01G558700 chr4A 95.802 2239 80 5 1934 4161 478730595 478732830 0.000000e+00 3602
13 TraesCS5A01G558700 chr4A 92.747 1227 81 6 82 1303 478728895 478730118 0.000000e+00 1766
14 TraesCS5A01G558700 chr4A 95.417 240 9 2 4704 4942 690223409 690223171 1.040000e-101 381
15 TraesCS5A01G558700 chr4A 97.531 81 2 0 1 81 620950211 620950131 6.890000e-29 139
16 TraesCS5A01G558700 chr5B 98.765 2025 23 2 82 2105 320400488 320402511 0.000000e+00 3600
17 TraesCS5A01G558700 chr5B 98.909 1008 11 0 3701 4708 320403929 320404936 0.000000e+00 1801
18 TraesCS5A01G558700 chr6A 94.509 2313 119 6 315 2624 316458216 316460523 0.000000e+00 3561
19 TraesCS5A01G558700 chr6A 95.092 1141 52 4 2722 3860 316482624 316483762 0.000000e+00 1794
20 TraesCS5A01G558700 chr6A 92.042 666 32 9 4059 4704 316483850 316484514 0.000000e+00 917
21 TraesCS5A01G558700 chr6A 96.537 231 8 0 4704 4934 10924568 10924798 2.880000e-102 383
22 TraesCS5A01G558700 chr6A 97.531 81 2 0 1 81 10924496 10924576 6.890000e-29 139
23 TraesCS5A01G558700 chr2A 92.209 2413 170 13 1516 3912 717806091 717808501 0.000000e+00 3398
24 TraesCS5A01G558700 chr4B 98.309 1774 27 3 82 1853 16675793 16677565 0.000000e+00 3107
25 TraesCS5A01G558700 chr4B 98.957 863 9 0 3841 4703 16677590 16678452 0.000000e+00 1544
26 TraesCS5A01G558700 chr2B 96.983 232 7 0 4704 4935 800099342 800099111 1.720000e-104 390
27 TraesCS5A01G558700 chr1A 96.970 231 7 0 4704 4934 476973058 476973288 6.200000e-104 388
28 TraesCS5A01G558700 chr1A 97.531 81 2 0 1 81 276652540 276652460 6.890000e-29 139
29 TraesCS5A01G558700 chr3B 94.672 244 11 2 4704 4946 286689718 286689476 1.340000e-100 377
30 TraesCS5A01G558700 chr3B 94.672 244 11 2 4704 4946 327365364 327365122 1.340000e-100 377
31 TraesCS5A01G558700 chr3B 94.606 241 11 2 4704 4943 281122465 281122704 6.240000e-99 372
32 TraesCS5A01G558700 chr6D 95.930 172 6 1 4933 5104 936527 936697 1.400000e-70 278
33 TraesCS5A01G558700 chr3A 100.000 80 0 0 1 80 730992692 730992771 1.140000e-31 148
34 TraesCS5A01G558700 chr3A 98.750 80 1 0 1 80 234612 234533 5.330000e-30 143
35 TraesCS5A01G558700 chrUn 97.531 81 2 0 1 81 30909662 30909742 6.890000e-29 139
36 TraesCS5A01G558700 chr7B 97.531 81 2 0 1 81 19252031 19252111 6.890000e-29 139
37 TraesCS5A01G558700 chr1B 97.531 81 2 0 1 81 557944497 557944577 6.890000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G558700 chr5A 709478030 709483133 5103 True 9426.000000 9426 100.000000 1 5104 1 chr5A.!!$R1 5103
1 TraesCS5A01G558700 chr5A 465387593 465392211 4618 False 8054.000000 8054 98.120000 79 4704 1 chr5A.!!$F1 4625
2 TraesCS5A01G558700 chr5A 556697028 556706592 9564 False 5501.666667 8264 98.901333 82 4712 3 chr5A.!!$F2 4630
3 TraesCS5A01G558700 chr7A 60707050 60711667 4617 True 8211.000000 8211 98.745000 82 4703 1 chr7A.!!$R2 4621
4 TraesCS5A01G558700 chr7A 689395303 689399923 4620 True 8141.000000 8141 98.464000 82 4703 1 chr7A.!!$R3 4621
5 TraesCS5A01G558700 chr1D 432575929 432579302 3373 False 5374.000000 5374 95.362000 1309 4703 1 chr1D.!!$F1 3394
6 TraesCS5A01G558700 chr4A 519797027 519800049 3022 False 3855.000000 3855 89.819000 902 3912 1 chr4A.!!$F1 3010
7 TraesCS5A01G558700 chr4A 478728895 478732830 3935 False 2684.000000 3602 94.274500 82 4161 2 chr4A.!!$F2 4079
8 TraesCS5A01G558700 chr5B 320400488 320404936 4448 False 2700.500000 3600 98.837000 82 4708 2 chr5B.!!$F1 4626
9 TraesCS5A01G558700 chr6A 316458216 316460523 2307 False 3561.000000 3561 94.509000 315 2624 1 chr6A.!!$F1 2309
10 TraesCS5A01G558700 chr6A 316482624 316484514 1890 False 1355.500000 1794 93.567000 2722 4704 2 chr6A.!!$F3 1982
11 TraesCS5A01G558700 chr2A 717806091 717808501 2410 False 3398.000000 3398 92.209000 1516 3912 1 chr2A.!!$F1 2396
12 TraesCS5A01G558700 chr4B 16675793 16678452 2659 False 2325.500000 3107 98.633000 82 4703 2 chr4B.!!$F1 4621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.771127 AAACTTGCTAGCCTCACCCA 59.229 50.000 13.29 0.00 0.00 4.51 F
26 27 0.995024 AACTTGCTAGCCTCACCCAT 59.005 50.000 13.29 0.00 0.00 4.00 F
32 33 1.202698 GCTAGCCTCACCCATACTTGG 60.203 57.143 2.29 0.00 43.23 3.61 F
36 37 1.202818 GCCTCACCCATACTTGGATCC 60.203 57.143 4.20 4.20 46.92 3.36 F
2034 2217 1.895798 TGAAGATGCAACTCTCGGAGT 59.104 47.619 4.69 1.23 45.64 3.85 F
2344 2529 3.423539 AGCACATTCTTAACAGGCAGA 57.576 42.857 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1283 1300 2.887783 CACTCGGTGATAGGCTCATACT 59.112 50.000 0.00 0.0 35.97 2.12 R
1898 2081 6.306643 TGGGTTTTTCTTCACCTTCAAAAT 57.693 33.333 0.00 0.0 33.09 1.82 R
2034 2217 3.144657 TCTTCTTCTGCAATGCCTTCA 57.855 42.857 1.53 0.0 0.00 3.02 R
2167 2351 6.639563 AGTGGTTTCAACTTGTGCTTTAAAT 58.360 32.000 0.00 0.0 0.00 1.40 R
3986 4264 1.737793 GGCACCATAGGACAACTTTCG 59.262 52.381 0.00 0.0 0.00 3.46 R
4245 4543 3.670055 GCAACACAAAAGGATTGTCATCG 59.330 43.478 0.00 0.0 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.939066 GGACTAAAACTTGCTAGCCTCA 58.061 45.455 13.29 0.00 0.00 3.86
22 23 3.685272 GGACTAAAACTTGCTAGCCTCAC 59.315 47.826 13.29 0.00 0.00 3.51
23 24 3.676093 ACTAAAACTTGCTAGCCTCACC 58.324 45.455 13.29 0.00 0.00 4.02
24 25 1.911057 AAAACTTGCTAGCCTCACCC 58.089 50.000 13.29 0.00 0.00 4.61
25 26 0.771127 AAACTTGCTAGCCTCACCCA 59.229 50.000 13.29 0.00 0.00 4.51
26 27 0.995024 AACTTGCTAGCCTCACCCAT 59.005 50.000 13.29 0.00 0.00 4.00
27 28 1.879575 ACTTGCTAGCCTCACCCATA 58.120 50.000 13.29 0.00 0.00 2.74
28 29 1.486726 ACTTGCTAGCCTCACCCATAC 59.513 52.381 13.29 0.00 0.00 2.39
29 30 1.765314 CTTGCTAGCCTCACCCATACT 59.235 52.381 13.29 0.00 0.00 2.12
30 31 1.879575 TGCTAGCCTCACCCATACTT 58.120 50.000 13.29 0.00 0.00 2.24
31 32 1.486310 TGCTAGCCTCACCCATACTTG 59.514 52.381 13.29 0.00 0.00 3.16
32 33 1.202698 GCTAGCCTCACCCATACTTGG 60.203 57.143 2.29 0.00 43.23 3.61
33 34 2.398588 CTAGCCTCACCCATACTTGGA 58.601 52.381 0.00 0.00 46.92 3.53
34 35 1.898863 AGCCTCACCCATACTTGGAT 58.101 50.000 0.00 0.00 46.92 3.41
35 36 1.771255 AGCCTCACCCATACTTGGATC 59.229 52.381 0.00 0.00 46.92 3.36
36 37 1.202818 GCCTCACCCATACTTGGATCC 60.203 57.143 4.20 4.20 46.92 3.36
37 38 2.126882 CCTCACCCATACTTGGATCCA 58.873 52.381 11.44 11.44 46.92 3.41
38 39 2.509548 CCTCACCCATACTTGGATCCAA 59.490 50.000 25.53 25.53 46.92 3.53
39 40 3.053693 CCTCACCCATACTTGGATCCAAA 60.054 47.826 26.87 14.63 46.92 3.28
40 41 4.386761 CCTCACCCATACTTGGATCCAAAT 60.387 45.833 26.87 20.68 46.92 2.32
41 42 5.163099 CCTCACCCATACTTGGATCCAAATA 60.163 44.000 26.87 22.22 46.92 1.40
42 43 5.690865 TCACCCATACTTGGATCCAAATAC 58.309 41.667 26.87 0.00 46.92 1.89
43 44 5.431731 TCACCCATACTTGGATCCAAATACT 59.568 40.000 26.87 12.55 46.92 2.12
44 45 6.617784 TCACCCATACTTGGATCCAAATACTA 59.382 38.462 26.87 14.15 46.92 1.82
45 46 7.128109 TCACCCATACTTGGATCCAAATACTAA 59.872 37.037 26.87 3.52 46.92 2.24
46 47 7.777910 CACCCATACTTGGATCCAAATACTAAA 59.222 37.037 26.87 3.12 46.92 1.85
47 48 8.340757 ACCCATACTTGGATCCAAATACTAAAA 58.659 33.333 26.87 2.35 46.92 1.52
48 49 9.196139 CCCATACTTGGATCCAAATACTAAAAA 57.804 33.333 26.87 1.58 46.92 1.94
755 766 2.882777 CGACAGCAGCTGTAGGCG 60.883 66.667 28.33 22.34 45.44 5.52
1277 1294 6.229733 TGATCATTGCATATTGTGATCCGTA 58.770 36.000 16.78 4.08 43.86 4.02
1283 1300 5.363939 TGCATATTGTGATCCGTATGAACA 58.636 37.500 0.00 0.00 0.00 3.18
2034 2217 1.895798 TGAAGATGCAACTCTCGGAGT 59.104 47.619 4.69 1.23 45.64 3.85
2148 2331 4.787135 TGTATGGTGATTGGGATAGCAA 57.213 40.909 0.00 0.00 0.00 3.91
2344 2529 3.423539 AGCACATTCTTAACAGGCAGA 57.576 42.857 0.00 0.00 0.00 4.26
2932 3118 7.556635 AGAAAAGTAGCAAAGAAGTTAGTTGGT 59.443 33.333 7.59 7.59 36.90 3.67
3031 3223 5.050023 GGAAGAAGTTGCTGAAGTTACTCAC 60.050 44.000 0.00 0.00 0.00 3.51
3986 4264 4.013050 AGATGGAGCTTGCTAAAAAGGAC 58.987 43.478 0.00 0.00 0.00 3.85
4245 4543 0.389426 ATGTACGCGAACCTGGACAC 60.389 55.000 15.93 0.00 0.00 3.67
4716 9960 8.805145 AGGAATTCTCTCTTTATTATCCTCCA 57.195 34.615 5.23 0.00 28.91 3.86
4717 9961 9.230477 AGGAATTCTCTCTTTATTATCCTCCAA 57.770 33.333 5.23 0.00 28.91 3.53
4718 9962 9.853177 GGAATTCTCTCTTTATTATCCTCCAAA 57.147 33.333 5.23 0.00 0.00 3.28
4720 9964 9.634021 AATTCTCTCTTTATTATCCTCCAAACC 57.366 33.333 0.00 0.00 0.00 3.27
4721 9965 7.749377 TCTCTCTTTATTATCCTCCAAACCA 57.251 36.000 0.00 0.00 0.00 3.67
4722 9966 8.337118 TCTCTCTTTATTATCCTCCAAACCAT 57.663 34.615 0.00 0.00 0.00 3.55
4723 9967 8.432805 TCTCTCTTTATTATCCTCCAAACCATC 58.567 37.037 0.00 0.00 0.00 3.51
4724 9968 7.518188 TCTCTTTATTATCCTCCAAACCATCC 58.482 38.462 0.00 0.00 0.00 3.51
4725 9969 7.128728 TCTCTTTATTATCCTCCAAACCATCCA 59.871 37.037 0.00 0.00 0.00 3.41
4726 9970 7.647827 TCTTTATTATCCTCCAAACCATCCAA 58.352 34.615 0.00 0.00 0.00 3.53
4727 9971 8.288812 TCTTTATTATCCTCCAAACCATCCAAT 58.711 33.333 0.00 0.00 0.00 3.16
4728 9972 8.477419 TTTATTATCCTCCAAACCATCCAATC 57.523 34.615 0.00 0.00 0.00 2.67
4729 9973 2.826674 TCCTCCAAACCATCCAATCC 57.173 50.000 0.00 0.00 0.00 3.01
4730 9974 1.999295 TCCTCCAAACCATCCAATCCA 59.001 47.619 0.00 0.00 0.00 3.41
4731 9975 2.381618 TCCTCCAAACCATCCAATCCAA 59.618 45.455 0.00 0.00 0.00 3.53
4732 9976 3.172339 CCTCCAAACCATCCAATCCAAA 58.828 45.455 0.00 0.00 0.00 3.28
4733 9977 3.582208 CCTCCAAACCATCCAATCCAAAA 59.418 43.478 0.00 0.00 0.00 2.44
4734 9978 4.563374 CCTCCAAACCATCCAATCCAAAAC 60.563 45.833 0.00 0.00 0.00 2.43
4735 9979 4.230455 TCCAAACCATCCAATCCAAAACT 58.770 39.130 0.00 0.00 0.00 2.66
4736 9980 4.283212 TCCAAACCATCCAATCCAAAACTC 59.717 41.667 0.00 0.00 0.00 3.01
4737 9981 4.236935 CAAACCATCCAATCCAAAACTCG 58.763 43.478 0.00 0.00 0.00 4.18
4738 9982 1.818674 ACCATCCAATCCAAAACTCGC 59.181 47.619 0.00 0.00 0.00 5.03
4739 9983 1.818060 CCATCCAATCCAAAACTCGCA 59.182 47.619 0.00 0.00 0.00 5.10
4740 9984 2.428171 CCATCCAATCCAAAACTCGCAT 59.572 45.455 0.00 0.00 0.00 4.73
4741 9985 3.441163 CATCCAATCCAAAACTCGCATG 58.559 45.455 0.00 0.00 0.00 4.06
4742 9986 2.513753 TCCAATCCAAAACTCGCATGT 58.486 42.857 0.00 0.00 0.00 3.21
4743 9987 2.228582 TCCAATCCAAAACTCGCATGTG 59.771 45.455 0.00 0.00 0.00 3.21
4744 9988 2.030007 CCAATCCAAAACTCGCATGTGT 60.030 45.455 6.09 0.00 0.00 3.72
4745 9989 3.552684 CCAATCCAAAACTCGCATGTGTT 60.553 43.478 6.09 0.82 33.46 3.32
4746 9990 4.320861 CCAATCCAAAACTCGCATGTGTTA 60.321 41.667 6.09 0.00 31.90 2.41
4747 9991 5.218885 CAATCCAAAACTCGCATGTGTTAA 58.781 37.500 6.09 0.00 31.90 2.01
4748 9992 4.902443 TCCAAAACTCGCATGTGTTAAA 57.098 36.364 6.09 0.00 31.90 1.52
4749 9993 4.854399 TCCAAAACTCGCATGTGTTAAAG 58.146 39.130 6.09 0.00 31.90 1.85
4750 9994 4.336993 TCCAAAACTCGCATGTGTTAAAGT 59.663 37.500 6.09 0.00 31.90 2.66
4751 9995 5.527951 TCCAAAACTCGCATGTGTTAAAGTA 59.472 36.000 6.09 0.00 31.90 2.24
4752 9996 5.851177 CCAAAACTCGCATGTGTTAAAGTAG 59.149 40.000 6.09 0.00 31.90 2.57
4753 9997 6.293190 CCAAAACTCGCATGTGTTAAAGTAGA 60.293 38.462 6.09 0.00 31.90 2.59
4754 9998 6.467723 AAACTCGCATGTGTTAAAGTAGAG 57.532 37.500 6.09 0.00 31.90 2.43
4755 9999 4.495422 ACTCGCATGTGTTAAAGTAGAGG 58.505 43.478 6.09 0.00 0.00 3.69
4756 10000 4.219944 ACTCGCATGTGTTAAAGTAGAGGA 59.780 41.667 6.09 0.00 0.00 3.71
4757 10001 5.142061 TCGCATGTGTTAAAGTAGAGGAA 57.858 39.130 6.09 0.00 0.00 3.36
4758 10002 5.730550 TCGCATGTGTTAAAGTAGAGGAAT 58.269 37.500 6.09 0.00 0.00 3.01
4759 10003 5.810587 TCGCATGTGTTAAAGTAGAGGAATC 59.189 40.000 6.09 0.00 0.00 2.52
4760 10004 5.580691 CGCATGTGTTAAAGTAGAGGAATCA 59.419 40.000 0.00 0.00 0.00 2.57
4761 10005 6.092122 CGCATGTGTTAAAGTAGAGGAATCAA 59.908 38.462 0.00 0.00 0.00 2.57
4762 10006 7.360861 CGCATGTGTTAAAGTAGAGGAATCAAA 60.361 37.037 0.00 0.00 0.00 2.69
4763 10007 8.462016 GCATGTGTTAAAGTAGAGGAATCAAAT 58.538 33.333 0.00 0.00 0.00 2.32
4764 10008 9.778993 CATGTGTTAAAGTAGAGGAATCAAATG 57.221 33.333 0.00 0.00 0.00 2.32
4765 10009 9.739276 ATGTGTTAAAGTAGAGGAATCAAATGA 57.261 29.630 0.00 0.00 0.00 2.57
4766 10010 9.219603 TGTGTTAAAGTAGAGGAATCAAATGAG 57.780 33.333 0.00 0.00 0.00 2.90
4767 10011 8.669243 GTGTTAAAGTAGAGGAATCAAATGAGG 58.331 37.037 0.00 0.00 0.00 3.86
4768 10012 8.602424 TGTTAAAGTAGAGGAATCAAATGAGGA 58.398 33.333 0.00 0.00 0.00 3.71
4769 10013 9.103861 GTTAAAGTAGAGGAATCAAATGAGGAG 57.896 37.037 0.00 0.00 0.00 3.69
4770 10014 7.502060 AAAGTAGAGGAATCAAATGAGGAGA 57.498 36.000 0.00 0.00 0.00 3.71
4771 10015 6.729690 AGTAGAGGAATCAAATGAGGAGAG 57.270 41.667 0.00 0.00 0.00 3.20
4772 10016 6.439487 AGTAGAGGAATCAAATGAGGAGAGA 58.561 40.000 0.00 0.00 0.00 3.10
4773 10017 5.874897 AGAGGAATCAAATGAGGAGAGAG 57.125 43.478 0.00 0.00 0.00 3.20
4774 10018 5.527385 AGAGGAATCAAATGAGGAGAGAGA 58.473 41.667 0.00 0.00 0.00 3.10
4775 10019 5.599656 AGAGGAATCAAATGAGGAGAGAGAG 59.400 44.000 0.00 0.00 0.00 3.20
4776 10020 4.655186 AGGAATCAAATGAGGAGAGAGAGG 59.345 45.833 0.00 0.00 0.00 3.69
4777 10021 4.202346 GGAATCAAATGAGGAGAGAGAGGG 60.202 50.000 0.00 0.00 0.00 4.30
4778 10022 2.114616 TCAAATGAGGAGAGAGAGGGC 58.885 52.381 0.00 0.00 0.00 5.19
4779 10023 2.117865 CAAATGAGGAGAGAGAGGGCT 58.882 52.381 0.00 0.00 0.00 5.19
4780 10024 3.052566 TCAAATGAGGAGAGAGAGGGCTA 60.053 47.826 0.00 0.00 0.00 3.93
4781 10025 3.697190 AATGAGGAGAGAGAGGGCTAA 57.303 47.619 0.00 0.00 0.00 3.09
4782 10026 3.921287 ATGAGGAGAGAGAGGGCTAAT 57.079 47.619 0.00 0.00 0.00 1.73
4783 10027 5.346782 AATGAGGAGAGAGAGGGCTAATA 57.653 43.478 0.00 0.00 0.00 0.98
4784 10028 4.107127 TGAGGAGAGAGAGGGCTAATAC 57.893 50.000 0.00 0.00 0.00 1.89
4785 10029 3.463704 TGAGGAGAGAGAGGGCTAATACA 59.536 47.826 0.00 0.00 0.00 2.29
4786 10030 4.107149 TGAGGAGAGAGAGGGCTAATACAT 59.893 45.833 0.00 0.00 0.00 2.29
4787 10031 5.313506 TGAGGAGAGAGAGGGCTAATACATA 59.686 44.000 0.00 0.00 0.00 2.29
4788 10032 6.011185 TGAGGAGAGAGAGGGCTAATACATAT 60.011 42.308 0.00 0.00 0.00 1.78
4789 10033 6.810500 AGGAGAGAGAGGGCTAATACATATT 58.189 40.000 0.00 0.00 0.00 1.28
4790 10034 7.252678 AGGAGAGAGAGGGCTAATACATATTT 58.747 38.462 0.00 0.00 0.00 1.40
4791 10035 7.737149 AGGAGAGAGAGGGCTAATACATATTTT 59.263 37.037 0.00 0.00 0.00 1.82
4792 10036 9.036980 GGAGAGAGAGGGCTAATACATATTTTA 57.963 37.037 0.00 0.00 0.00 1.52
4794 10038 9.608718 AGAGAGAGGGCTAATACATATTTTAGT 57.391 33.333 0.00 0.00 0.00 2.24
4798 10042 9.617053 AGAGGGCTAATACATATTTTAGTAGGT 57.383 33.333 0.00 0.00 0.00 3.08
4834 10078 9.274206 CTAAAAGTTTTTAGCCTCAAGACTAGT 57.726 33.333 6.10 0.00 41.97 2.57
4835 10079 7.731882 AAAGTTTTTAGCCTCAAGACTAGTC 57.268 36.000 15.41 15.41 0.00 2.59
4836 10080 5.795972 AGTTTTTAGCCTCAAGACTAGTCC 58.204 41.667 19.38 2.89 0.00 3.85
4837 10081 5.544562 AGTTTTTAGCCTCAAGACTAGTCCT 59.455 40.000 19.38 10.36 0.00 3.85
4838 10082 6.724905 AGTTTTTAGCCTCAAGACTAGTCCTA 59.275 38.462 19.38 9.39 0.00 2.94
4839 10083 6.777213 TTTTAGCCTCAAGACTAGTCCTAG 57.223 41.667 19.38 13.33 39.04 3.02
4840 10084 2.661718 AGCCTCAAGACTAGTCCTAGC 58.338 52.381 19.38 14.54 36.66 3.42
4841 10085 1.684450 GCCTCAAGACTAGTCCTAGCC 59.316 57.143 19.38 0.89 36.66 3.93
4842 10086 2.688515 GCCTCAAGACTAGTCCTAGCCT 60.689 54.545 19.38 0.00 36.66 4.58
4843 10087 3.219281 CCTCAAGACTAGTCCTAGCCTC 58.781 54.545 19.38 0.00 36.66 4.70
4844 10088 3.117663 CCTCAAGACTAGTCCTAGCCTCT 60.118 52.174 19.38 0.00 36.66 3.69
4845 10089 4.134563 CTCAAGACTAGTCCTAGCCTCTC 58.865 52.174 19.38 0.00 36.66 3.20
4846 10090 3.783642 TCAAGACTAGTCCTAGCCTCTCT 59.216 47.826 19.38 0.00 36.66 3.10
4847 10091 4.228666 TCAAGACTAGTCCTAGCCTCTCTT 59.771 45.833 19.38 0.17 36.66 2.85
4848 10092 4.873724 AGACTAGTCCTAGCCTCTCTTT 57.126 45.455 19.38 0.00 36.66 2.52
4849 10093 5.979656 AGACTAGTCCTAGCCTCTCTTTA 57.020 43.478 19.38 0.00 36.66 1.85
4850 10094 5.937111 AGACTAGTCCTAGCCTCTCTTTAG 58.063 45.833 19.38 0.00 36.66 1.85
4851 10095 5.430745 AGACTAGTCCTAGCCTCTCTTTAGT 59.569 44.000 19.38 0.00 36.66 2.24
4852 10096 5.687780 ACTAGTCCTAGCCTCTCTTTAGTC 58.312 45.833 1.22 0.00 36.66 2.59
4853 10097 4.594675 AGTCCTAGCCTCTCTTTAGTCA 57.405 45.455 0.00 0.00 0.00 3.41
4854 10098 4.532834 AGTCCTAGCCTCTCTTTAGTCAG 58.467 47.826 0.00 0.00 0.00 3.51
4855 10099 3.634910 GTCCTAGCCTCTCTTTAGTCAGG 59.365 52.174 0.00 0.00 0.00 3.86
4856 10100 2.962421 CCTAGCCTCTCTTTAGTCAGGG 59.038 54.545 0.00 0.00 0.00 4.45
4857 10101 1.872773 AGCCTCTCTTTAGTCAGGGG 58.127 55.000 0.00 0.00 0.00 4.79
4858 10102 1.079658 AGCCTCTCTTTAGTCAGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
4859 10103 1.208293 GCCTCTCTTTAGTCAGGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
4860 10104 1.834263 CCTCTCTTTAGTCAGGGGTGG 59.166 57.143 0.00 0.00 0.00 4.61
4861 10105 2.541466 CTCTCTTTAGTCAGGGGTGGT 58.459 52.381 0.00 0.00 0.00 4.16
4862 10106 2.907042 CTCTCTTTAGTCAGGGGTGGTT 59.093 50.000 0.00 0.00 0.00 3.67
4863 10107 2.637872 TCTCTTTAGTCAGGGGTGGTTG 59.362 50.000 0.00 0.00 0.00 3.77
4864 10108 1.702957 TCTTTAGTCAGGGGTGGTTGG 59.297 52.381 0.00 0.00 0.00 3.77
4865 10109 1.702957 CTTTAGTCAGGGGTGGTTGGA 59.297 52.381 0.00 0.00 0.00 3.53
4866 10110 1.822425 TTAGTCAGGGGTGGTTGGAA 58.178 50.000 0.00 0.00 0.00 3.53
4867 10111 1.061546 TAGTCAGGGGTGGTTGGAAC 58.938 55.000 0.00 0.00 0.00 3.62
4868 10112 0.697854 AGTCAGGGGTGGTTGGAACT 60.698 55.000 0.00 0.00 0.00 3.01
4869 10113 0.185175 GTCAGGGGTGGTTGGAACTT 59.815 55.000 0.00 0.00 0.00 2.66
4870 10114 0.930726 TCAGGGGTGGTTGGAACTTT 59.069 50.000 0.00 0.00 0.00 2.66
4871 10115 2.136863 TCAGGGGTGGTTGGAACTTTA 58.863 47.619 0.00 0.00 0.00 1.85
4872 10116 2.107552 TCAGGGGTGGTTGGAACTTTAG 59.892 50.000 0.00 0.00 0.00 1.85
4873 10117 1.203013 AGGGGTGGTTGGAACTTTAGC 60.203 52.381 0.00 0.00 0.00 3.09
4874 10118 1.254026 GGGTGGTTGGAACTTTAGCC 58.746 55.000 0.00 0.00 0.00 3.93
4875 10119 1.203013 GGGTGGTTGGAACTTTAGCCT 60.203 52.381 0.00 0.00 0.00 4.58
4876 10120 2.594131 GGTGGTTGGAACTTTAGCCTT 58.406 47.619 0.00 0.00 0.00 4.35
4877 10121 2.963101 GGTGGTTGGAACTTTAGCCTTT 59.037 45.455 0.00 0.00 0.00 3.11
4878 10122 4.146564 GGTGGTTGGAACTTTAGCCTTTA 58.853 43.478 0.00 0.00 0.00 1.85
4879 10123 4.585581 GGTGGTTGGAACTTTAGCCTTTAA 59.414 41.667 0.00 0.00 0.00 1.52
4880 10124 5.069383 GGTGGTTGGAACTTTAGCCTTTAAA 59.931 40.000 0.00 0.00 0.00 1.52
4881 10125 6.407187 GGTGGTTGGAACTTTAGCCTTTAAAA 60.407 38.462 0.00 0.00 0.00 1.52
4882 10126 6.700081 GTGGTTGGAACTTTAGCCTTTAAAAG 59.300 38.462 0.00 0.00 38.41 2.27
4883 10127 6.608002 TGGTTGGAACTTTAGCCTTTAAAAGA 59.392 34.615 2.08 0.00 36.43 2.52
4884 10128 7.145985 GGTTGGAACTTTAGCCTTTAAAAGAG 58.854 38.462 2.08 0.00 36.43 2.85
4885 10129 7.013942 GGTTGGAACTTTAGCCTTTAAAAGAGA 59.986 37.037 2.08 0.00 36.43 3.10
4886 10130 7.506328 TGGAACTTTAGCCTTTAAAAGAGAC 57.494 36.000 2.08 0.00 36.43 3.36
4887 10131 7.287810 TGGAACTTTAGCCTTTAAAAGAGACT 58.712 34.615 2.08 0.00 36.43 3.24
4888 10132 8.434392 TGGAACTTTAGCCTTTAAAAGAGACTA 58.566 33.333 2.08 0.00 36.43 2.59
4889 10133 9.451002 GGAACTTTAGCCTTTAAAAGAGACTAT 57.549 33.333 2.08 0.00 36.43 2.12
4917 10161 9.720769 TTTAGTCAGACTAAAAATAGTCCCTTG 57.279 33.333 26.93 5.29 44.84 3.61
4918 10162 6.712276 AGTCAGACTAAAAATAGTCCCTTGG 58.288 40.000 0.00 0.00 45.66 3.61
4919 10163 6.500751 AGTCAGACTAAAAATAGTCCCTTGGA 59.499 38.462 0.00 1.82 45.66 3.53
4920 10164 7.182930 AGTCAGACTAAAAATAGTCCCTTGGAT 59.817 37.037 0.00 0.00 45.66 3.41
4921 10165 7.496263 GTCAGACTAAAAATAGTCCCTTGGATC 59.504 40.741 11.35 0.00 45.66 3.36
4922 10166 6.768381 CAGACTAAAAATAGTCCCTTGGATCC 59.232 42.308 4.20 4.20 45.66 3.36
4923 10167 6.447084 AGACTAAAAATAGTCCCTTGGATCCA 59.553 38.462 11.44 11.44 45.66 3.41
4924 10168 7.036863 AGACTAAAAATAGTCCCTTGGATCCAA 60.037 37.037 25.53 25.53 45.66 3.53
4925 10169 7.283354 GACTAAAAATAGTCCCTTGGATCCAAG 59.717 40.741 37.68 37.68 42.75 3.61
4932 10176 3.181526 CTTGGATCCAAGCACCCTC 57.818 57.895 35.47 0.00 45.38 4.30
4933 10177 0.622665 CTTGGATCCAAGCACCCTCT 59.377 55.000 35.47 0.00 45.38 3.69
4934 10178 1.839994 CTTGGATCCAAGCACCCTCTA 59.160 52.381 35.47 8.33 45.38 2.43
4935 10179 2.196742 TGGATCCAAGCACCCTCTAT 57.803 50.000 13.46 0.00 0.00 1.98
4936 10180 1.770658 TGGATCCAAGCACCCTCTATG 59.229 52.381 13.46 0.00 0.00 2.23
4937 10181 1.544314 GGATCCAAGCACCCTCTATGC 60.544 57.143 6.95 0.00 43.74 3.14
4955 10199 1.608055 GCTATATGCATGGCCACACA 58.392 50.000 8.16 10.38 42.31 3.72
4956 10200 2.165167 GCTATATGCATGGCCACACAT 58.835 47.619 22.25 22.25 42.31 3.21
4957 10201 2.163010 GCTATATGCATGGCCACACATC 59.837 50.000 22.26 7.76 42.31 3.06
4958 10202 2.670019 ATATGCATGGCCACACATCT 57.330 45.000 22.26 12.46 0.00 2.90
4959 10203 1.971481 TATGCATGGCCACACATCTC 58.029 50.000 22.26 2.33 0.00 2.75
4960 10204 0.033894 ATGCATGGCCACACATCTCA 60.034 50.000 8.16 0.00 0.00 3.27
4961 10205 0.033894 TGCATGGCCACACATCTCAT 60.034 50.000 8.16 0.00 0.00 2.90
4962 10206 1.108776 GCATGGCCACACATCTCATT 58.891 50.000 8.16 0.00 0.00 2.57
4963 10207 1.479323 GCATGGCCACACATCTCATTT 59.521 47.619 8.16 0.00 0.00 2.32
4964 10208 2.689471 GCATGGCCACACATCTCATTTA 59.311 45.455 8.16 0.00 0.00 1.40
4965 10209 3.319972 GCATGGCCACACATCTCATTTAT 59.680 43.478 8.16 0.00 0.00 1.40
4966 10210 4.794981 GCATGGCCACACATCTCATTTATG 60.795 45.833 8.16 0.00 0.00 1.90
4967 10211 2.689471 TGGCCACACATCTCATTTATGC 59.311 45.455 0.00 0.00 0.00 3.14
4968 10212 2.689471 GGCCACACATCTCATTTATGCA 59.311 45.455 0.00 0.00 0.00 3.96
4969 10213 3.319972 GGCCACACATCTCATTTATGCAT 59.680 43.478 3.79 3.79 0.00 3.96
4970 10214 4.202182 GGCCACACATCTCATTTATGCATT 60.202 41.667 3.54 0.00 0.00 3.56
4971 10215 5.353938 GCCACACATCTCATTTATGCATTT 58.646 37.500 3.54 0.00 0.00 2.32
4972 10216 5.233476 GCCACACATCTCATTTATGCATTTG 59.767 40.000 3.54 0.73 0.00 2.32
4973 10217 6.334989 CCACACATCTCATTTATGCATTTGT 58.665 36.000 3.54 0.00 0.00 2.83
4974 10218 6.474427 CCACACATCTCATTTATGCATTTGTC 59.526 38.462 3.54 0.00 0.00 3.18
4975 10219 7.255569 CACACATCTCATTTATGCATTTGTCT 58.744 34.615 3.54 0.00 0.00 3.41
4976 10220 7.220108 CACACATCTCATTTATGCATTTGTCTG 59.780 37.037 3.54 0.00 0.00 3.51
4977 10221 7.121611 ACACATCTCATTTATGCATTTGTCTGA 59.878 33.333 3.54 0.93 0.00 3.27
4978 10222 8.135529 CACATCTCATTTATGCATTTGTCTGAT 58.864 33.333 3.54 0.36 0.00 2.90
4979 10223 8.692710 ACATCTCATTTATGCATTTGTCTGATT 58.307 29.630 3.54 0.00 0.00 2.57
4980 10224 9.181805 CATCTCATTTATGCATTTGTCTGATTC 57.818 33.333 3.54 0.00 0.00 2.52
4981 10225 7.709947 TCTCATTTATGCATTTGTCTGATTCC 58.290 34.615 3.54 0.00 0.00 3.01
4982 10226 7.339976 TCTCATTTATGCATTTGTCTGATTCCA 59.660 33.333 3.54 0.00 0.00 3.53
4983 10227 7.259882 TCATTTATGCATTTGTCTGATTCCAC 58.740 34.615 3.54 0.00 0.00 4.02
4984 10228 6.587206 TTTATGCATTTGTCTGATTCCACA 57.413 33.333 3.54 0.00 0.00 4.17
4985 10229 3.921119 TGCATTTGTCTGATTCCACAC 57.079 42.857 0.00 0.00 0.00 3.82
4986 10230 2.557924 TGCATTTGTCTGATTCCACACC 59.442 45.455 0.00 0.00 0.00 4.16
4987 10231 2.557924 GCATTTGTCTGATTCCACACCA 59.442 45.455 0.00 0.00 0.00 4.17
4988 10232 3.005684 GCATTTGTCTGATTCCACACCAA 59.994 43.478 0.00 0.00 0.00 3.67
4989 10233 4.322198 GCATTTGTCTGATTCCACACCAAT 60.322 41.667 0.00 0.00 0.00 3.16
4990 10234 5.105797 GCATTTGTCTGATTCCACACCAATA 60.106 40.000 0.00 0.00 0.00 1.90
4991 10235 5.957842 TTTGTCTGATTCCACACCAATAC 57.042 39.130 0.00 0.00 0.00 1.89
4992 10236 4.908601 TGTCTGATTCCACACCAATACT 57.091 40.909 0.00 0.00 0.00 2.12
4993 10237 6.367374 TTGTCTGATTCCACACCAATACTA 57.633 37.500 0.00 0.00 0.00 1.82
4994 10238 6.367374 TGTCTGATTCCACACCAATACTAA 57.633 37.500 0.00 0.00 0.00 2.24
4995 10239 6.957631 TGTCTGATTCCACACCAATACTAAT 58.042 36.000 0.00 0.00 0.00 1.73
4996 10240 7.047891 TGTCTGATTCCACACCAATACTAATC 58.952 38.462 0.00 0.00 0.00 1.75
4997 10241 7.047891 GTCTGATTCCACACCAATACTAATCA 58.952 38.462 0.00 0.00 32.60 2.57
4998 10242 7.552687 GTCTGATTCCACACCAATACTAATCAA 59.447 37.037 0.00 0.00 33.04 2.57
4999 10243 8.106462 TCTGATTCCACACCAATACTAATCAAA 58.894 33.333 0.00 0.00 33.04 2.69
5000 10244 8.642935 TGATTCCACACCAATACTAATCAAAA 57.357 30.769 0.00 0.00 31.06 2.44
5001 10245 9.253832 TGATTCCACACCAATACTAATCAAAAT 57.746 29.630 0.00 0.00 31.06 1.82
5005 10249 9.967451 TCCACACCAATACTAATCAAAATTAGA 57.033 29.630 11.16 0.00 44.87 2.10
5027 10271 9.787435 TTAGAGTGAAATTAATGTGGTTGTAGT 57.213 29.630 0.00 0.00 0.00 2.73
5028 10272 8.691661 AGAGTGAAATTAATGTGGTTGTAGTT 57.308 30.769 0.00 0.00 0.00 2.24
5029 10273 9.787435 AGAGTGAAATTAATGTGGTTGTAGTTA 57.213 29.630 0.00 0.00 0.00 2.24
5039 10283 8.700439 AATGTGGTTGTAGTTAATGTTTACCT 57.300 30.769 0.00 0.00 0.00 3.08
5040 10284 9.796180 AATGTGGTTGTAGTTAATGTTTACCTA 57.204 29.630 0.00 0.00 0.00 3.08
5041 10285 9.969001 ATGTGGTTGTAGTTAATGTTTACCTAT 57.031 29.630 0.00 0.00 0.00 2.57
5042 10286 9.796180 TGTGGTTGTAGTTAATGTTTACCTATT 57.204 29.630 0.00 0.00 0.00 1.73
5044 10288 9.452287 TGGTTGTAGTTAATGTTTACCTATTCC 57.548 33.333 0.00 0.00 0.00 3.01
5045 10289 8.896744 GGTTGTAGTTAATGTTTACCTATTCCC 58.103 37.037 0.00 0.00 0.00 3.97
5046 10290 9.452287 GTTGTAGTTAATGTTTACCTATTCCCA 57.548 33.333 0.00 0.00 0.00 4.37
5051 10295 9.369672 AGTTAATGTTTACCTATTCCCAAAACA 57.630 29.630 0.00 0.00 42.35 2.83
5052 10296 9.414295 GTTAATGTTTACCTATTCCCAAAACAC 57.586 33.333 1.45 0.00 41.35 3.32
5053 10297 5.692613 TGTTTACCTATTCCCAAAACACG 57.307 39.130 0.00 0.00 35.69 4.49
5054 10298 4.519730 TGTTTACCTATTCCCAAAACACGG 59.480 41.667 0.00 0.00 35.69 4.94
5055 10299 4.637387 TTACCTATTCCCAAAACACGGA 57.363 40.909 0.00 0.00 0.00 4.69
5056 10300 3.732048 ACCTATTCCCAAAACACGGAT 57.268 42.857 0.00 0.00 0.00 4.18
5057 10301 4.042271 ACCTATTCCCAAAACACGGATT 57.958 40.909 0.00 0.00 0.00 3.01
5058 10302 5.182169 ACCTATTCCCAAAACACGGATTA 57.818 39.130 0.00 0.00 0.00 1.75
5059 10303 4.945543 ACCTATTCCCAAAACACGGATTAC 59.054 41.667 0.00 0.00 0.00 1.89
5060 10304 4.944930 CCTATTCCCAAAACACGGATTACA 59.055 41.667 0.00 0.00 0.00 2.41
5061 10305 4.776795 ATTCCCAAAACACGGATTACAC 57.223 40.909 0.00 0.00 0.00 2.90
5062 10306 3.210232 TCCCAAAACACGGATTACACA 57.790 42.857 0.00 0.00 0.00 3.72
5063 10307 2.879646 TCCCAAAACACGGATTACACAC 59.120 45.455 0.00 0.00 0.00 3.82
5064 10308 2.882137 CCCAAAACACGGATTACACACT 59.118 45.455 0.00 0.00 0.00 3.55
5065 10309 3.304391 CCCAAAACACGGATTACACACTG 60.304 47.826 0.00 0.00 0.00 3.66
5066 10310 3.562141 CCAAAACACGGATTACACACTGA 59.438 43.478 0.00 0.00 0.00 3.41
5067 10311 4.035792 CCAAAACACGGATTACACACTGAA 59.964 41.667 0.00 0.00 0.00 3.02
5068 10312 5.449314 CCAAAACACGGATTACACACTGAAA 60.449 40.000 0.00 0.00 0.00 2.69
5069 10313 5.821516 AAACACGGATTACACACTGAAAA 57.178 34.783 0.00 0.00 0.00 2.29
5070 10314 6.385649 AAACACGGATTACACACTGAAAAT 57.614 33.333 0.00 0.00 0.00 1.82
5071 10315 6.385649 AACACGGATTACACACTGAAAATT 57.614 33.333 0.00 0.00 0.00 1.82
5072 10316 5.997385 ACACGGATTACACACTGAAAATTC 58.003 37.500 0.00 0.00 0.00 2.17
5073 10317 5.529430 ACACGGATTACACACTGAAAATTCA 59.471 36.000 0.00 0.00 35.57 2.57
5074 10318 6.206634 ACACGGATTACACACTGAAAATTCAT 59.793 34.615 0.00 0.00 36.46 2.57
5075 10319 7.389330 ACACGGATTACACACTGAAAATTCATA 59.611 33.333 0.00 0.00 36.46 2.15
5076 10320 8.397906 CACGGATTACACACTGAAAATTCATAT 58.602 33.333 0.00 0.00 36.46 1.78
5077 10321 8.956426 ACGGATTACACACTGAAAATTCATATT 58.044 29.630 0.00 0.00 36.46 1.28
5078 10322 9.438291 CGGATTACACACTGAAAATTCATATTC 57.562 33.333 0.00 0.00 36.46 1.75
5079 10323 9.736023 GGATTACACACTGAAAATTCATATTCC 57.264 33.333 0.00 0.00 36.46 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
1 2 3.685272 GGTGAGGCTAGCAAGTTTTAGTC 59.315 47.826 18.24 0.00 0.00 2.59
2 3 3.559384 GGGTGAGGCTAGCAAGTTTTAGT 60.559 47.826 18.24 0.00 0.00 2.24
3 4 3.010420 GGGTGAGGCTAGCAAGTTTTAG 58.990 50.000 18.24 0.00 0.00 1.85
4 5 2.373836 TGGGTGAGGCTAGCAAGTTTTA 59.626 45.455 18.24 0.00 0.00 1.52
5 6 1.144913 TGGGTGAGGCTAGCAAGTTTT 59.855 47.619 18.24 0.00 0.00 2.43
6 7 0.771127 TGGGTGAGGCTAGCAAGTTT 59.229 50.000 18.24 0.00 0.00 2.66
7 8 0.995024 ATGGGTGAGGCTAGCAAGTT 59.005 50.000 18.24 0.00 0.00 2.66
8 9 1.486726 GTATGGGTGAGGCTAGCAAGT 59.513 52.381 18.24 0.00 0.00 3.16
9 10 1.765314 AGTATGGGTGAGGCTAGCAAG 59.235 52.381 18.24 0.00 0.00 4.01
10 11 1.879575 AGTATGGGTGAGGCTAGCAA 58.120 50.000 18.24 0.00 0.00 3.91
11 12 1.486310 CAAGTATGGGTGAGGCTAGCA 59.514 52.381 18.24 0.00 0.00 3.49
12 13 1.202698 CCAAGTATGGGTGAGGCTAGC 60.203 57.143 6.04 6.04 43.51 3.42
13 14 2.918712 CCAAGTATGGGTGAGGCTAG 57.081 55.000 0.00 0.00 43.51 3.42
755 766 2.825836 AGCAGCGTATTGGCCTGC 60.826 61.111 3.32 3.00 37.34 4.85
845 856 2.308570 TGCCATGAACTTACCCATCTGT 59.691 45.455 0.00 0.00 0.00 3.41
1277 1294 4.262207 CGGTGATAGGCTCATACTGTTCAT 60.262 45.833 0.00 0.00 35.97 2.57
1283 1300 2.887783 CACTCGGTGATAGGCTCATACT 59.112 50.000 0.00 0.00 35.97 2.12
1822 2005 8.597227 GTTCACAAATGGGTAAAGTTAAACAAC 58.403 33.333 0.00 0.00 0.00 3.32
1898 2081 6.306643 TGGGTTTTTCTTCACCTTCAAAAT 57.693 33.333 0.00 0.00 33.09 1.82
2034 2217 3.144657 TCTTCTTCTGCAATGCCTTCA 57.855 42.857 1.53 0.00 0.00 3.02
2167 2351 6.639563 AGTGGTTTCAACTTGTGCTTTAAAT 58.360 32.000 0.00 0.00 0.00 1.40
2344 2529 1.574526 TAGCCAGCTGCCCCTTGAAT 61.575 55.000 8.66 0.00 42.71 2.57
2689 2874 1.545582 GCTGGCTTTGCTGTTTCCATA 59.454 47.619 0.00 0.00 0.00 2.74
2901 3087 3.764237 TCTTTGCTACTTTTCTCCGGT 57.236 42.857 0.00 0.00 0.00 5.28
3031 3223 2.478335 TAAACCCGCTGCCTCCCAAG 62.478 60.000 0.00 0.00 0.00 3.61
3986 4264 1.737793 GGCACCATAGGACAACTTTCG 59.262 52.381 0.00 0.00 0.00 3.46
4245 4543 3.670055 GCAACACAAAAGGATTGTCATCG 59.330 43.478 0.00 0.00 0.00 3.84
4704 9948 7.010160 GGATTGGATGGTTTGGAGGATAATAA 58.990 38.462 0.00 0.00 0.00 1.40
4708 9952 3.790976 TGGATTGGATGGTTTGGAGGATA 59.209 43.478 0.00 0.00 0.00 2.59
4709 9953 2.586838 TGGATTGGATGGTTTGGAGGAT 59.413 45.455 0.00 0.00 0.00 3.24
4710 9954 1.999295 TGGATTGGATGGTTTGGAGGA 59.001 47.619 0.00 0.00 0.00 3.71
4711 9955 2.530460 TGGATTGGATGGTTTGGAGG 57.470 50.000 0.00 0.00 0.00 4.30
4712 9956 4.284234 AGTTTTGGATTGGATGGTTTGGAG 59.716 41.667 0.00 0.00 0.00 3.86
4713 9957 4.230455 AGTTTTGGATTGGATGGTTTGGA 58.770 39.130 0.00 0.00 0.00 3.53
4714 9958 4.568956 GAGTTTTGGATTGGATGGTTTGG 58.431 43.478 0.00 0.00 0.00 3.28
4715 9959 4.236935 CGAGTTTTGGATTGGATGGTTTG 58.763 43.478 0.00 0.00 0.00 2.93
4716 9960 3.306019 GCGAGTTTTGGATTGGATGGTTT 60.306 43.478 0.00 0.00 0.00 3.27
4717 9961 2.231235 GCGAGTTTTGGATTGGATGGTT 59.769 45.455 0.00 0.00 0.00 3.67
4718 9962 1.818674 GCGAGTTTTGGATTGGATGGT 59.181 47.619 0.00 0.00 0.00 3.55
4719 9963 1.818060 TGCGAGTTTTGGATTGGATGG 59.182 47.619 0.00 0.00 0.00 3.51
4720 9964 3.119388 ACATGCGAGTTTTGGATTGGATG 60.119 43.478 0.00 0.00 35.42 3.51
4721 9965 3.091545 ACATGCGAGTTTTGGATTGGAT 58.908 40.909 0.00 0.00 0.00 3.41
4722 9966 2.228582 CACATGCGAGTTTTGGATTGGA 59.771 45.455 0.00 0.00 0.00 3.53
4723 9967 2.030007 ACACATGCGAGTTTTGGATTGG 60.030 45.455 0.00 0.00 0.00 3.16
4724 9968 3.287312 ACACATGCGAGTTTTGGATTG 57.713 42.857 0.00 0.00 0.00 2.67
4725 9969 5.446143 TTAACACATGCGAGTTTTGGATT 57.554 34.783 4.42 0.00 0.00 3.01
4726 9970 5.009610 ACTTTAACACATGCGAGTTTTGGAT 59.990 36.000 4.42 0.00 0.00 3.41
4727 9971 4.336993 ACTTTAACACATGCGAGTTTTGGA 59.663 37.500 4.42 0.00 0.00 3.53
4728 9972 4.606961 ACTTTAACACATGCGAGTTTTGG 58.393 39.130 4.42 0.00 0.00 3.28
4729 9973 6.655062 TCTACTTTAACACATGCGAGTTTTG 58.345 36.000 4.42 0.00 0.00 2.44
4730 9974 6.073222 CCTCTACTTTAACACATGCGAGTTTT 60.073 38.462 4.42 0.00 0.00 2.43
4731 9975 5.408604 CCTCTACTTTAACACATGCGAGTTT 59.591 40.000 4.42 0.00 0.00 2.66
4732 9976 4.929808 CCTCTACTTTAACACATGCGAGTT 59.070 41.667 0.00 0.00 0.00 3.01
4733 9977 4.219944 TCCTCTACTTTAACACATGCGAGT 59.780 41.667 0.00 0.00 0.00 4.18
4734 9978 4.744570 TCCTCTACTTTAACACATGCGAG 58.255 43.478 0.00 0.00 0.00 5.03
4735 9979 4.794278 TCCTCTACTTTAACACATGCGA 57.206 40.909 0.00 0.00 0.00 5.10
4736 9980 5.580691 TGATTCCTCTACTTTAACACATGCG 59.419 40.000 0.00 0.00 0.00 4.73
4737 9981 6.985188 TGATTCCTCTACTTTAACACATGC 57.015 37.500 0.00 0.00 0.00 4.06
4738 9982 9.778993 CATTTGATTCCTCTACTTTAACACATG 57.221 33.333 0.00 0.00 0.00 3.21
4739 9983 9.739276 TCATTTGATTCCTCTACTTTAACACAT 57.261 29.630 0.00 0.00 0.00 3.21
4740 9984 9.219603 CTCATTTGATTCCTCTACTTTAACACA 57.780 33.333 0.00 0.00 0.00 3.72
4741 9985 8.669243 CCTCATTTGATTCCTCTACTTTAACAC 58.331 37.037 0.00 0.00 0.00 3.32
4742 9986 8.602424 TCCTCATTTGATTCCTCTACTTTAACA 58.398 33.333 0.00 0.00 0.00 2.41
4743 9987 9.103861 CTCCTCATTTGATTCCTCTACTTTAAC 57.896 37.037 0.00 0.00 0.00 2.01
4744 9988 9.046846 TCTCCTCATTTGATTCCTCTACTTTAA 57.953 33.333 0.00 0.00 0.00 1.52
4745 9989 8.609617 TCTCCTCATTTGATTCCTCTACTTTA 57.390 34.615 0.00 0.00 0.00 1.85
4746 9990 7.401493 TCTCTCCTCATTTGATTCCTCTACTTT 59.599 37.037 0.00 0.00 0.00 2.66
4747 9991 6.900186 TCTCTCCTCATTTGATTCCTCTACTT 59.100 38.462 0.00 0.00 0.00 2.24
4748 9992 6.439487 TCTCTCCTCATTTGATTCCTCTACT 58.561 40.000 0.00 0.00 0.00 2.57
4749 9993 6.549364 TCTCTCTCCTCATTTGATTCCTCTAC 59.451 42.308 0.00 0.00 0.00 2.59
4750 9994 6.677552 TCTCTCTCCTCATTTGATTCCTCTA 58.322 40.000 0.00 0.00 0.00 2.43
4751 9995 5.527385 TCTCTCTCCTCATTTGATTCCTCT 58.473 41.667 0.00 0.00 0.00 3.69
4752 9996 5.221501 CCTCTCTCTCCTCATTTGATTCCTC 60.222 48.000 0.00 0.00 0.00 3.71
4753 9997 4.655186 CCTCTCTCTCCTCATTTGATTCCT 59.345 45.833 0.00 0.00 0.00 3.36
4754 9998 4.202346 CCCTCTCTCTCCTCATTTGATTCC 60.202 50.000 0.00 0.00 0.00 3.01
4755 9999 4.743348 GCCCTCTCTCTCCTCATTTGATTC 60.743 50.000 0.00 0.00 0.00 2.52
4756 10000 3.136260 GCCCTCTCTCTCCTCATTTGATT 59.864 47.826 0.00 0.00 0.00 2.57
4757 10001 2.705127 GCCCTCTCTCTCCTCATTTGAT 59.295 50.000 0.00 0.00 0.00 2.57
4758 10002 2.114616 GCCCTCTCTCTCCTCATTTGA 58.885 52.381 0.00 0.00 0.00 2.69
4759 10003 2.117865 AGCCCTCTCTCTCCTCATTTG 58.882 52.381 0.00 0.00 0.00 2.32
4760 10004 2.566708 AGCCCTCTCTCTCCTCATTT 57.433 50.000 0.00 0.00 0.00 2.32
4761 10005 3.697190 TTAGCCCTCTCTCTCCTCATT 57.303 47.619 0.00 0.00 0.00 2.57
4762 10006 3.921287 ATTAGCCCTCTCTCTCCTCAT 57.079 47.619 0.00 0.00 0.00 2.90
4763 10007 3.463704 TGTATTAGCCCTCTCTCTCCTCA 59.536 47.826 0.00 0.00 0.00 3.86
4764 10008 4.107127 TGTATTAGCCCTCTCTCTCCTC 57.893 50.000 0.00 0.00 0.00 3.71
4765 10009 4.757997 ATGTATTAGCCCTCTCTCTCCT 57.242 45.455 0.00 0.00 0.00 3.69
4766 10010 7.489239 AAATATGTATTAGCCCTCTCTCTCC 57.511 40.000 0.00 0.00 0.00 3.71
4768 10012 9.608718 ACTAAAATATGTATTAGCCCTCTCTCT 57.391 33.333 0.00 0.00 33.39 3.10
4772 10016 9.617053 ACCTACTAAAATATGTATTAGCCCTCT 57.383 33.333 0.00 0.00 33.39 3.69
4809 10053 9.269453 GACTAGTCTTGAGGCTAAAAACTTTTA 57.731 33.333 15.91 0.00 0.00 1.52
4810 10054 7.228906 GGACTAGTCTTGAGGCTAAAAACTTTT 59.771 37.037 21.88 0.00 0.00 2.27
4811 10055 6.711194 GGACTAGTCTTGAGGCTAAAAACTTT 59.289 38.462 21.88 0.00 0.00 2.66
4812 10056 6.043358 AGGACTAGTCTTGAGGCTAAAAACTT 59.957 38.462 21.88 0.00 0.00 2.66
4813 10057 5.544562 AGGACTAGTCTTGAGGCTAAAAACT 59.455 40.000 21.88 0.00 0.00 2.66
4814 10058 5.795972 AGGACTAGTCTTGAGGCTAAAAAC 58.204 41.667 21.88 0.73 0.00 2.43
4815 10059 6.351117 GCTAGGACTAGTCTTGAGGCTAAAAA 60.351 42.308 21.88 0.00 35.65 1.94
4816 10060 5.127356 GCTAGGACTAGTCTTGAGGCTAAAA 59.873 44.000 21.88 0.00 35.65 1.52
4817 10061 4.645588 GCTAGGACTAGTCTTGAGGCTAAA 59.354 45.833 21.88 0.00 35.65 1.85
4818 10062 4.208746 GCTAGGACTAGTCTTGAGGCTAA 58.791 47.826 21.88 0.00 35.65 3.09
4819 10063 3.435313 GGCTAGGACTAGTCTTGAGGCTA 60.435 52.174 24.87 16.06 35.06 3.93
4820 10064 2.661718 GCTAGGACTAGTCTTGAGGCT 58.338 52.381 21.88 11.79 35.65 4.58
4821 10065 1.684450 GGCTAGGACTAGTCTTGAGGC 59.316 57.143 21.88 21.38 35.06 4.70
4822 10066 3.306472 AGGCTAGGACTAGTCTTGAGG 57.694 52.381 21.88 10.56 45.03 3.86
4828 10072 5.687780 ACTAAAGAGAGGCTAGGACTAGTC 58.312 45.833 14.87 14.87 38.03 2.59
4829 10073 5.192121 TGACTAAAGAGAGGCTAGGACTAGT 59.808 44.000 0.00 0.00 35.65 2.57
4830 10074 5.686753 TGACTAAAGAGAGGCTAGGACTAG 58.313 45.833 1.98 1.98 36.29 2.57
4831 10075 5.398126 CCTGACTAAAGAGAGGCTAGGACTA 60.398 48.000 0.00 0.00 29.08 2.59
4832 10076 4.532834 CTGACTAAAGAGAGGCTAGGACT 58.467 47.826 0.00 0.00 0.00 3.85
4833 10077 3.634910 CCTGACTAAAGAGAGGCTAGGAC 59.365 52.174 0.00 0.00 29.08 3.85
4834 10078 3.373220 CCCTGACTAAAGAGAGGCTAGGA 60.373 52.174 0.00 0.00 29.08 2.94
4835 10079 2.962421 CCCTGACTAAAGAGAGGCTAGG 59.038 54.545 0.00 0.00 0.00 3.02
4836 10080 2.962421 CCCCTGACTAAAGAGAGGCTAG 59.038 54.545 0.00 0.00 0.00 3.42
4837 10081 2.315155 ACCCCTGACTAAAGAGAGGCTA 59.685 50.000 0.00 0.00 0.00 3.93
4838 10082 1.079658 ACCCCTGACTAAAGAGAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
4839 10083 1.208293 CACCCCTGACTAAAGAGAGGC 59.792 57.143 0.00 0.00 0.00 4.70
4840 10084 1.834263 CCACCCCTGACTAAAGAGAGG 59.166 57.143 0.00 0.00 0.00 3.69
4841 10085 2.541466 ACCACCCCTGACTAAAGAGAG 58.459 52.381 0.00 0.00 0.00 3.20
4842 10086 2.637872 CAACCACCCCTGACTAAAGAGA 59.362 50.000 0.00 0.00 0.00 3.10
4843 10087 2.290323 CCAACCACCCCTGACTAAAGAG 60.290 54.545 0.00 0.00 0.00 2.85
4844 10088 1.702957 CCAACCACCCCTGACTAAAGA 59.297 52.381 0.00 0.00 0.00 2.52
4845 10089 1.702957 TCCAACCACCCCTGACTAAAG 59.297 52.381 0.00 0.00 0.00 1.85
4846 10090 1.822425 TCCAACCACCCCTGACTAAA 58.178 50.000 0.00 0.00 0.00 1.85
4847 10091 1.422402 GTTCCAACCACCCCTGACTAA 59.578 52.381 0.00 0.00 0.00 2.24
4848 10092 1.061546 GTTCCAACCACCCCTGACTA 58.938 55.000 0.00 0.00 0.00 2.59
4849 10093 0.697854 AGTTCCAACCACCCCTGACT 60.698 55.000 0.00 0.00 0.00 3.41
4850 10094 0.185175 AAGTTCCAACCACCCCTGAC 59.815 55.000 0.00 0.00 0.00 3.51
4851 10095 0.930726 AAAGTTCCAACCACCCCTGA 59.069 50.000 0.00 0.00 0.00 3.86
4852 10096 2.514803 CTAAAGTTCCAACCACCCCTG 58.485 52.381 0.00 0.00 0.00 4.45
4853 10097 1.203013 GCTAAAGTTCCAACCACCCCT 60.203 52.381 0.00 0.00 0.00 4.79
4854 10098 1.254026 GCTAAAGTTCCAACCACCCC 58.746 55.000 0.00 0.00 0.00 4.95
4855 10099 1.203013 AGGCTAAAGTTCCAACCACCC 60.203 52.381 0.00 0.00 0.00 4.61
4856 10100 2.287977 AGGCTAAAGTTCCAACCACC 57.712 50.000 0.00 0.00 0.00 4.61
4857 10101 5.777850 TTAAAGGCTAAAGTTCCAACCAC 57.222 39.130 0.00 0.00 0.00 4.16
4858 10102 6.608002 TCTTTTAAAGGCTAAAGTTCCAACCA 59.392 34.615 4.77 0.00 33.97 3.67
4859 10103 7.013942 TCTCTTTTAAAGGCTAAAGTTCCAACC 59.986 37.037 4.77 0.00 33.97 3.77
4860 10104 7.861372 GTCTCTTTTAAAGGCTAAAGTTCCAAC 59.139 37.037 4.77 0.00 33.97 3.77
4861 10105 7.778382 AGTCTCTTTTAAAGGCTAAAGTTCCAA 59.222 33.333 4.77 0.00 33.97 3.53
4862 10106 7.287810 AGTCTCTTTTAAAGGCTAAAGTTCCA 58.712 34.615 4.77 0.00 33.97 3.53
4863 10107 7.747155 AGTCTCTTTTAAAGGCTAAAGTTCC 57.253 36.000 4.77 0.00 33.97 3.62
4891 10135 9.720769 CAAGGGACTATTTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 42.90 1.85
4892 10136 8.319146 CCAAGGGACTATTTTTAGTCTGACTAA 58.681 37.037 22.80 22.80 44.35 2.24
4893 10137 7.676893 TCCAAGGGACTATTTTTAGTCTGACTA 59.323 37.037 13.34 13.34 44.35 2.59
4894 10138 6.500751 TCCAAGGGACTATTTTTAGTCTGACT 59.499 38.462 15.57 15.57 44.35 3.41
4895 10139 6.708285 TCCAAGGGACTATTTTTAGTCTGAC 58.292 40.000 11.69 0.00 44.35 3.51
4896 10140 6.945636 TCCAAGGGACTATTTTTAGTCTGA 57.054 37.500 11.69 1.60 44.35 3.27
4897 10141 6.768381 GGATCCAAGGGACTATTTTTAGTCTG 59.232 42.308 6.95 4.29 44.35 3.51
4898 10142 6.447084 TGGATCCAAGGGACTATTTTTAGTCT 59.553 38.462 13.46 0.00 44.35 3.24
4899 10143 6.659824 TGGATCCAAGGGACTATTTTTAGTC 58.340 40.000 13.46 4.87 44.23 2.59
4900 10144 6.652205 TGGATCCAAGGGACTATTTTTAGT 57.348 37.500 13.46 0.00 38.49 2.24
4901 10145 7.573968 CTTGGATCCAAGGGACTATTTTTAG 57.426 40.000 37.26 14.87 46.88 1.85
4915 10159 1.965414 TAGAGGGTGCTTGGATCCAA 58.035 50.000 25.53 25.53 0.00 3.53
4916 10160 1.770658 CATAGAGGGTGCTTGGATCCA 59.229 52.381 11.44 11.44 0.00 3.41
4917 10161 1.544314 GCATAGAGGGTGCTTGGATCC 60.544 57.143 4.20 4.20 39.45 3.36
4918 10162 1.889545 GCATAGAGGGTGCTTGGATC 58.110 55.000 0.00 0.00 39.45 3.36
4936 10180 1.608055 TGTGTGGCCATGCATATAGC 58.392 50.000 9.72 2.61 45.96 2.97
4937 10181 3.682696 AGATGTGTGGCCATGCATATAG 58.317 45.455 20.38 0.00 0.00 1.31
4938 10182 3.072768 TGAGATGTGTGGCCATGCATATA 59.927 43.478 20.38 10.25 0.00 0.86
4939 10183 2.158579 TGAGATGTGTGGCCATGCATAT 60.159 45.455 20.38 18.30 0.00 1.78
4940 10184 1.212441 TGAGATGTGTGGCCATGCATA 59.788 47.619 20.38 9.65 0.00 3.14
4941 10185 0.033894 TGAGATGTGTGGCCATGCAT 60.034 50.000 20.45 20.45 0.00 3.96
4942 10186 0.033894 ATGAGATGTGTGGCCATGCA 60.034 50.000 9.72 12.08 0.00 3.96
4943 10187 1.108776 AATGAGATGTGTGGCCATGC 58.891 50.000 9.72 5.51 0.00 4.06
4944 10188 4.794981 GCATAAATGAGATGTGTGGCCATG 60.795 45.833 9.72 0.00 0.00 3.66
4945 10189 3.319972 GCATAAATGAGATGTGTGGCCAT 59.680 43.478 9.72 0.00 0.00 4.40
4946 10190 2.689471 GCATAAATGAGATGTGTGGCCA 59.311 45.455 0.00 0.00 0.00 5.36
4947 10191 2.689471 TGCATAAATGAGATGTGTGGCC 59.311 45.455 0.00 0.00 0.00 5.36
4948 10192 4.579454 ATGCATAAATGAGATGTGTGGC 57.421 40.909 0.00 0.00 0.00 5.01
4949 10193 6.334989 ACAAATGCATAAATGAGATGTGTGG 58.665 36.000 0.00 0.00 0.00 4.17
4950 10194 7.220108 CAGACAAATGCATAAATGAGATGTGTG 59.780 37.037 0.00 1.32 0.00 3.82
4951 10195 7.121611 TCAGACAAATGCATAAATGAGATGTGT 59.878 33.333 0.00 0.00 0.00 3.72
4952 10196 7.477494 TCAGACAAATGCATAAATGAGATGTG 58.523 34.615 0.00 0.00 0.00 3.21
4953 10197 7.634671 TCAGACAAATGCATAAATGAGATGT 57.365 32.000 0.00 0.00 0.00 3.06
4954 10198 9.181805 GAATCAGACAAATGCATAAATGAGATG 57.818 33.333 0.00 2.86 0.00 2.90
4955 10199 8.358148 GGAATCAGACAAATGCATAAATGAGAT 58.642 33.333 0.00 0.00 0.00 2.75
4956 10200 7.339976 TGGAATCAGACAAATGCATAAATGAGA 59.660 33.333 0.00 0.00 0.00 3.27
4957 10201 7.434307 GTGGAATCAGACAAATGCATAAATGAG 59.566 37.037 0.00 0.00 0.00 2.90
4958 10202 7.093858 TGTGGAATCAGACAAATGCATAAATGA 60.094 33.333 0.00 0.96 0.00 2.57
4959 10203 7.009815 GTGTGGAATCAGACAAATGCATAAATG 59.990 37.037 0.00 2.35 37.16 2.32
4960 10204 7.037438 GTGTGGAATCAGACAAATGCATAAAT 58.963 34.615 0.00 0.00 37.16 1.40
4961 10205 6.389091 GTGTGGAATCAGACAAATGCATAAA 58.611 36.000 0.00 0.00 37.16 1.40
4962 10206 5.105797 GGTGTGGAATCAGACAAATGCATAA 60.106 40.000 0.00 0.00 38.73 1.90
4963 10207 4.398988 GGTGTGGAATCAGACAAATGCATA 59.601 41.667 0.00 0.00 38.73 3.14
4964 10208 3.194116 GGTGTGGAATCAGACAAATGCAT 59.806 43.478 0.00 0.00 38.73 3.96
4965 10209 2.557924 GGTGTGGAATCAGACAAATGCA 59.442 45.455 0.00 0.00 38.73 3.96
4966 10210 2.557924 TGGTGTGGAATCAGACAAATGC 59.442 45.455 0.00 0.00 38.73 3.56
4967 10211 4.852134 TTGGTGTGGAATCAGACAAATG 57.148 40.909 0.00 0.00 38.73 2.32
4968 10212 6.248433 AGTATTGGTGTGGAATCAGACAAAT 58.752 36.000 2.61 2.61 41.74 2.32
4969 10213 5.630121 AGTATTGGTGTGGAATCAGACAAA 58.370 37.500 0.00 0.00 38.73 2.83
4970 10214 5.241403 AGTATTGGTGTGGAATCAGACAA 57.759 39.130 0.00 0.00 38.73 3.18
4971 10215 4.908601 AGTATTGGTGTGGAATCAGACA 57.091 40.909 0.00 0.00 38.73 3.41
4972 10216 7.047891 TGATTAGTATTGGTGTGGAATCAGAC 58.952 38.462 0.00 0.00 36.55 3.51
4973 10217 7.194112 TGATTAGTATTGGTGTGGAATCAGA 57.806 36.000 0.00 0.00 30.52 3.27
4974 10218 7.864108 TTGATTAGTATTGGTGTGGAATCAG 57.136 36.000 0.00 0.00 34.37 2.90
4975 10219 8.642935 TTTTGATTAGTATTGGTGTGGAATCA 57.357 30.769 0.00 0.00 31.75 2.57
4979 10223 9.967451 TCTAATTTTGATTAGTATTGGTGTGGA 57.033 29.630 6.18 0.00 35.99 4.02
5001 10245 9.787435 ACTACAACCACATTAATTTCACTCTAA 57.213 29.630 0.00 0.00 0.00 2.10
5002 10246 9.787435 AACTACAACCACATTAATTTCACTCTA 57.213 29.630 0.00 0.00 0.00 2.43
5003 10247 8.691661 AACTACAACCACATTAATTTCACTCT 57.308 30.769 0.00 0.00 0.00 3.24
5013 10257 9.796180 AGGTAAACATTAACTACAACCACATTA 57.204 29.630 0.00 0.00 0.00 1.90
5014 10258 8.700439 AGGTAAACATTAACTACAACCACATT 57.300 30.769 0.00 0.00 0.00 2.71
5015 10259 9.969001 ATAGGTAAACATTAACTACAACCACAT 57.031 29.630 0.00 0.00 0.00 3.21
5016 10260 9.796180 AATAGGTAAACATTAACTACAACCACA 57.204 29.630 0.00 0.00 0.00 4.17
5018 10262 9.452287 GGAATAGGTAAACATTAACTACAACCA 57.548 33.333 0.00 0.00 0.00 3.67
5019 10263 8.896744 GGGAATAGGTAAACATTAACTACAACC 58.103 37.037 0.00 2.68 0.00 3.77
5020 10264 9.452287 TGGGAATAGGTAAACATTAACTACAAC 57.548 33.333 0.00 0.00 0.00 3.32
5025 10269 9.369672 TGTTTTGGGAATAGGTAAACATTAACT 57.630 29.630 0.00 0.00 0.00 2.24
5026 10270 9.414295 GTGTTTTGGGAATAGGTAAACATTAAC 57.586 33.333 0.00 0.00 32.36 2.01
5027 10271 8.298140 CGTGTTTTGGGAATAGGTAAACATTAA 58.702 33.333 0.00 0.00 32.36 1.40
5028 10272 7.094291 CCGTGTTTTGGGAATAGGTAAACATTA 60.094 37.037 0.00 0.00 32.36 1.90
5029 10273 6.294843 CCGTGTTTTGGGAATAGGTAAACATT 60.295 38.462 0.00 0.00 32.36 2.71
5030 10274 5.184287 CCGTGTTTTGGGAATAGGTAAACAT 59.816 40.000 0.00 0.00 32.36 2.71
5031 10275 4.519730 CCGTGTTTTGGGAATAGGTAAACA 59.480 41.667 0.00 0.00 0.00 2.83
5032 10276 4.761227 TCCGTGTTTTGGGAATAGGTAAAC 59.239 41.667 0.00 0.00 0.00 2.01
5033 10277 4.983053 TCCGTGTTTTGGGAATAGGTAAA 58.017 39.130 0.00 0.00 0.00 2.01
5034 10278 4.637387 TCCGTGTTTTGGGAATAGGTAA 57.363 40.909 0.00 0.00 0.00 2.85
5035 10279 4.847990 ATCCGTGTTTTGGGAATAGGTA 57.152 40.909 0.00 0.00 35.60 3.08
5036 10280 3.732048 ATCCGTGTTTTGGGAATAGGT 57.268 42.857 0.00 0.00 35.60 3.08
5037 10281 4.944930 TGTAATCCGTGTTTTGGGAATAGG 59.055 41.667 0.00 0.00 35.60 2.57
5038 10282 5.413213 TGTGTAATCCGTGTTTTGGGAATAG 59.587 40.000 0.00 0.00 35.60 1.73
5039 10283 5.181622 GTGTGTAATCCGTGTTTTGGGAATA 59.818 40.000 0.00 0.00 35.60 1.75
5040 10284 4.022676 GTGTGTAATCCGTGTTTTGGGAAT 60.023 41.667 0.00 0.00 35.60 3.01
5041 10285 3.315749 GTGTGTAATCCGTGTTTTGGGAA 59.684 43.478 0.00 0.00 35.60 3.97
5042 10286 2.879646 GTGTGTAATCCGTGTTTTGGGA 59.120 45.455 0.00 0.00 36.61 4.37
5043 10287 2.882137 AGTGTGTAATCCGTGTTTTGGG 59.118 45.455 0.00 0.00 0.00 4.12
5044 10288 3.562141 TCAGTGTGTAATCCGTGTTTTGG 59.438 43.478 0.00 0.00 0.00 3.28
5045 10289 4.804608 TCAGTGTGTAATCCGTGTTTTG 57.195 40.909 0.00 0.00 0.00 2.44
5046 10290 5.821516 TTTCAGTGTGTAATCCGTGTTTT 57.178 34.783 0.00 0.00 0.00 2.43
5047 10291 5.821516 TTTTCAGTGTGTAATCCGTGTTT 57.178 34.783 0.00 0.00 0.00 2.83
5048 10292 6.038825 TGAATTTTCAGTGTGTAATCCGTGTT 59.961 34.615 0.00 0.00 32.50 3.32
5049 10293 5.529430 TGAATTTTCAGTGTGTAATCCGTGT 59.471 36.000 0.00 0.00 32.50 4.49
5050 10294 5.996219 TGAATTTTCAGTGTGTAATCCGTG 58.004 37.500 0.00 0.00 32.50 4.94
5051 10295 6.817765 ATGAATTTTCAGTGTGTAATCCGT 57.182 33.333 0.00 0.00 41.08 4.69
5052 10296 9.438291 GAATATGAATTTTCAGTGTGTAATCCG 57.562 33.333 0.00 0.00 41.08 4.18
5053 10297 9.736023 GGAATATGAATTTTCAGTGTGTAATCC 57.264 33.333 0.00 0.00 41.08 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.