Multiple sequence alignment - TraesCS5A01G557200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G557200 chr5A 100.000 3751 0 0 1 3751 708293448 708289698 0.000000e+00 6927.0
1 TraesCS5A01G557200 chr5A 80.343 992 183 5 1763 2745 3515235 3516223 0.000000e+00 741.0
2 TraesCS5A01G557200 chr5A 79.037 997 186 17 1762 2744 700176819 700175832 0.000000e+00 662.0
3 TraesCS5A01G557200 chr5A 77.943 807 160 12 1761 2555 3616007 3615207 4.350000e-134 488.0
4 TraesCS5A01G557200 chr5A 99.167 120 1 0 3632 3751 616087050 616086931 2.270000e-52 217.0
5 TraesCS5A01G557200 chr5A 100.000 31 0 0 2894 2924 532475918 532475948 1.460000e-04 58.4
6 TraesCS5A01G557200 chr3B 93.196 2807 148 22 117 2891 647160666 647163461 0.000000e+00 4085.0
7 TraesCS5A01G557200 chr3B 82.974 417 56 11 1 413 426317653 426317248 2.750000e-96 363.0
8 TraesCS5A01G557200 chr5D 80.544 992 181 6 1763 2745 5274925 5273937 0.000000e+00 752.0
9 TraesCS5A01G557200 chr5B 80.466 988 181 5 1763 2741 6624913 6625897 0.000000e+00 745.0
10 TraesCS5A01G557200 chr5B 79.433 987 189 8 1761 2737 31142626 31143608 0.000000e+00 686.0
11 TraesCS5A01G557200 chr5B 79.418 996 179 16 1761 2740 6474826 6475811 0.000000e+00 680.0
12 TraesCS5A01G557200 chr2B 84.926 743 82 18 2894 3631 214296142 214295425 0.000000e+00 725.0
13 TraesCS5A01G557200 chr2B 80.048 421 66 15 1 412 249604271 249604682 2.830000e-76 296.0
14 TraesCS5A01G557200 chr2B 100.000 28 0 0 2894 2921 706975706 706975733 7.000000e-03 52.8
15 TraesCS5A01G557200 chrUn 79.678 994 182 14 1761 2741 110473084 110474070 0.000000e+00 699.0
16 TraesCS5A01G557200 chr1B 91.077 325 24 3 3135 3458 179552034 179551714 5.750000e-118 435.0
17 TraesCS5A01G557200 chr1B 90.000 320 26 2 2894 3212 179552366 179552052 3.490000e-110 409.0
18 TraesCS5A01G557200 chr1B 100.000 121 0 0 3631 3751 635918017 635918137 1.360000e-54 224.0
19 TraesCS5A01G557200 chr1B 91.558 154 10 3 3478 3631 179551721 179551571 3.800000e-50 209.0
20 TraesCS5A01G557200 chr1B 100.000 31 0 0 2894 2924 641210955 641210925 1.460000e-04 58.4
21 TraesCS5A01G557200 chr1B 100.000 31 0 0 2894 2924 678910273 678910303 1.460000e-04 58.4
22 TraesCS5A01G557200 chr1B 96.774 31 1 0 2894 2924 659911786 659911756 7.000000e-03 52.8
23 TraesCS5A01G557200 chr3A 83.568 426 58 9 1 423 443824481 443824065 4.540000e-104 388.0
24 TraesCS5A01G557200 chr3A 99.174 121 1 0 3631 3751 109524 109404 6.310000e-53 219.0
25 TraesCS5A01G557200 chr3A 99.174 121 1 0 3631 3751 599383218 599383338 6.310000e-53 219.0
26 TraesCS5A01G557200 chr1D 81.687 415 65 11 2 412 336372695 336372288 6.000000e-88 335.0
27 TraesCS5A01G557200 chr4D 81.176 425 66 12 2 423 105009084 105008671 2.790000e-86 329.0
28 TraesCS5A01G557200 chr3D 82.005 389 54 9 32 416 329000380 329000004 2.170000e-82 316.0
29 TraesCS5A01G557200 chr7D 79.487 429 64 19 2 423 371271756 371272167 2.210000e-72 283.0
30 TraesCS5A01G557200 chr1A 79.621 422 58 26 4 413 439326806 439327211 1.030000e-70 278.0
31 TraesCS5A01G557200 chr2A 99.187 123 1 0 3629 3751 676161470 676161592 4.880000e-54 222.0
32 TraesCS5A01G557200 chr2A 98.374 123 1 1 3629 3751 64354122 64354001 8.160000e-52 215.0
33 TraesCS5A01G557200 chr2A 100.000 30 0 0 2894 2923 394800919 394800890 5.230000e-04 56.5
34 TraesCS5A01G557200 chr2A 100.000 30 0 0 2894 2923 406408614 406408643 5.230000e-04 56.5
35 TraesCS5A01G557200 chr7A 99.174 121 1 0 3631 3751 51814656 51814776 6.310000e-53 219.0
36 TraesCS5A01G557200 chr6A 93.878 147 6 3 3608 3751 23931235 23931089 6.310000e-53 219.0
37 TraesCS5A01G557200 chr7B 98.374 123 2 0 3629 3751 22259789 22259667 2.270000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G557200 chr5A 708289698 708293448 3750 True 6927 6927 100.000000 1 3751 1 chr5A.!!$R4 3750
1 TraesCS5A01G557200 chr5A 3515235 3516223 988 False 741 741 80.343000 1763 2745 1 chr5A.!!$F1 982
2 TraesCS5A01G557200 chr5A 700175832 700176819 987 True 662 662 79.037000 1762 2744 1 chr5A.!!$R3 982
3 TraesCS5A01G557200 chr5A 3615207 3616007 800 True 488 488 77.943000 1761 2555 1 chr5A.!!$R1 794
4 TraesCS5A01G557200 chr3B 647160666 647163461 2795 False 4085 4085 93.196000 117 2891 1 chr3B.!!$F1 2774
5 TraesCS5A01G557200 chr5D 5273937 5274925 988 True 752 752 80.544000 1763 2745 1 chr5D.!!$R1 982
6 TraesCS5A01G557200 chr5B 6624913 6625897 984 False 745 745 80.466000 1763 2741 1 chr5B.!!$F2 978
7 TraesCS5A01G557200 chr5B 31142626 31143608 982 False 686 686 79.433000 1761 2737 1 chr5B.!!$F3 976
8 TraesCS5A01G557200 chr5B 6474826 6475811 985 False 680 680 79.418000 1761 2740 1 chr5B.!!$F1 979
9 TraesCS5A01G557200 chr2B 214295425 214296142 717 True 725 725 84.926000 2894 3631 1 chr2B.!!$R1 737
10 TraesCS5A01G557200 chrUn 110473084 110474070 986 False 699 699 79.678000 1761 2741 1 chrUn.!!$F1 980
11 TraesCS5A01G557200 chr1B 179551571 179552366 795 True 351 435 90.878333 2894 3631 3 chr1B.!!$R3 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 704 0.178891 AAGGAGAGGGAGTTGGCAGA 60.179 55.0 0.00 0.0 0.00 4.26 F
714 729 0.320374 TTGCCTAGGTGGAAGACGTG 59.680 55.0 11.31 0.0 38.35 4.49 F
2277 2318 0.462047 CGGCAACCAGATAGACCACC 60.462 60.0 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2381 2422 0.817634 TTCCTTCCTTGGTGTGCACG 60.818 55.000 13.13 0.00 0.0 5.34 R
2456 2497 4.398988 TCCTTGTAAATGTATGGCAGCTTG 59.601 41.667 0.00 0.00 0.0 4.01 R
3468 3636 0.037326 TTAGGACTGCAGCTGGAACG 60.037 55.000 17.12 4.17 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.427410 GCGGCAGCGACAAAACTG 60.427 61.111 0.00 0.00 36.96 3.16
25 26 3.022287 CGGCAGCGACAAAACTGT 58.978 55.556 0.00 0.00 36.26 3.55
26 27 1.355210 CGGCAGCGACAAAACTGTT 59.645 52.632 0.00 0.00 36.26 3.16
27 28 0.248458 CGGCAGCGACAAAACTGTTT 60.248 50.000 0.00 0.00 36.26 2.83
28 29 1.477105 GGCAGCGACAAAACTGTTTC 58.523 50.000 6.20 0.00 36.26 2.78
29 30 1.112459 GCAGCGACAAAACTGTTTCG 58.888 50.000 6.20 7.44 36.26 3.46
30 31 1.267832 GCAGCGACAAAACTGTTTCGA 60.268 47.619 15.10 0.00 36.26 3.71
31 32 2.629022 CAGCGACAAAACTGTTTCGAG 58.371 47.619 15.10 7.72 0.00 4.04
32 33 2.030457 CAGCGACAAAACTGTTTCGAGT 59.970 45.455 15.10 10.39 0.00 4.18
33 34 2.284417 AGCGACAAAACTGTTTCGAGTC 59.716 45.455 15.10 16.03 0.00 3.36
34 35 2.284417 GCGACAAAACTGTTTCGAGTCT 59.716 45.455 20.78 1.14 0.00 3.24
35 36 3.601812 GCGACAAAACTGTTTCGAGTCTC 60.602 47.826 20.78 14.48 0.00 3.36
36 37 3.060473 CGACAAAACTGTTTCGAGTCTCC 60.060 47.826 20.78 6.38 0.00 3.71
37 38 3.203716 ACAAAACTGTTTCGAGTCTCCC 58.796 45.455 6.20 0.00 0.00 4.30
38 39 3.118371 ACAAAACTGTTTCGAGTCTCCCT 60.118 43.478 6.20 0.00 0.00 4.20
39 40 3.388345 AAACTGTTTCGAGTCTCCCTC 57.612 47.619 0.00 0.00 36.80 4.30
40 41 2.296073 ACTGTTTCGAGTCTCCCTCT 57.704 50.000 0.00 0.00 38.11 3.69
41 42 3.436577 ACTGTTTCGAGTCTCCCTCTA 57.563 47.619 0.00 0.00 38.11 2.43
42 43 3.349022 ACTGTTTCGAGTCTCCCTCTAG 58.651 50.000 0.00 0.00 38.11 2.43
43 44 2.685897 CTGTTTCGAGTCTCCCTCTAGG 59.314 54.545 0.00 0.00 38.11 3.02
59 60 6.715347 CCTCTAGGGGTTTTTGGATTTATG 57.285 41.667 0.00 0.00 0.00 1.90
60 61 5.598417 CCTCTAGGGGTTTTTGGATTTATGG 59.402 44.000 0.00 0.00 0.00 2.74
61 62 5.524535 TCTAGGGGTTTTTGGATTTATGGG 58.475 41.667 0.00 0.00 0.00 4.00
62 63 4.427956 AGGGGTTTTTGGATTTATGGGA 57.572 40.909 0.00 0.00 0.00 4.37
63 64 4.769050 AGGGGTTTTTGGATTTATGGGAA 58.231 39.130 0.00 0.00 0.00 3.97
64 65 5.358306 AGGGGTTTTTGGATTTATGGGAAT 58.642 37.500 0.00 0.00 0.00 3.01
65 66 5.795343 AGGGGTTTTTGGATTTATGGGAATT 59.205 36.000 0.00 0.00 0.00 2.17
66 67 6.276806 AGGGGTTTTTGGATTTATGGGAATTT 59.723 34.615 0.00 0.00 0.00 1.82
67 68 7.462650 AGGGGTTTTTGGATTTATGGGAATTTA 59.537 33.333 0.00 0.00 0.00 1.40
68 69 7.554835 GGGGTTTTTGGATTTATGGGAATTTAC 59.445 37.037 0.00 0.00 0.00 2.01
69 70 8.103935 GGGTTTTTGGATTTATGGGAATTTACA 58.896 33.333 0.00 0.00 0.00 2.41
70 71 9.161629 GGTTTTTGGATTTATGGGAATTTACAG 57.838 33.333 0.00 0.00 0.00 2.74
71 72 8.664798 GTTTTTGGATTTATGGGAATTTACAGC 58.335 33.333 0.00 0.00 0.00 4.40
72 73 5.766150 TGGATTTATGGGAATTTACAGCG 57.234 39.130 0.00 0.00 0.00 5.18
73 74 4.037446 TGGATTTATGGGAATTTACAGCGC 59.963 41.667 0.00 0.00 0.00 5.92
74 75 4.278419 GGATTTATGGGAATTTACAGCGCT 59.722 41.667 2.64 2.64 0.00 5.92
75 76 5.472137 GGATTTATGGGAATTTACAGCGCTA 59.528 40.000 10.99 0.00 0.00 4.26
76 77 6.348540 GGATTTATGGGAATTTACAGCGCTAG 60.349 42.308 10.99 7.53 0.00 3.42
77 78 3.838244 ATGGGAATTTACAGCGCTAGA 57.162 42.857 10.99 0.00 0.00 2.43
78 79 3.620427 TGGGAATTTACAGCGCTAGAA 57.380 42.857 10.99 3.93 0.00 2.10
79 80 4.150897 TGGGAATTTACAGCGCTAGAAT 57.849 40.909 10.99 7.96 0.00 2.40
80 81 4.523083 TGGGAATTTACAGCGCTAGAATT 58.477 39.130 10.99 16.32 0.00 2.17
81 82 5.676552 TGGGAATTTACAGCGCTAGAATTA 58.323 37.500 10.99 0.00 0.00 1.40
82 83 5.758296 TGGGAATTTACAGCGCTAGAATTAG 59.242 40.000 10.99 0.00 0.00 1.73
83 84 5.179555 GGGAATTTACAGCGCTAGAATTAGG 59.820 44.000 10.99 0.00 0.00 2.69
84 85 5.758784 GGAATTTACAGCGCTAGAATTAGGT 59.241 40.000 10.99 3.36 0.00 3.08
85 86 6.073711 GGAATTTACAGCGCTAGAATTAGGTC 60.074 42.308 10.99 5.20 0.00 3.85
86 87 4.994907 TTACAGCGCTAGAATTAGGTCA 57.005 40.909 10.99 0.00 0.00 4.02
87 88 3.887621 ACAGCGCTAGAATTAGGTCAA 57.112 42.857 10.99 0.00 0.00 3.18
88 89 4.202245 ACAGCGCTAGAATTAGGTCAAA 57.798 40.909 10.99 0.00 0.00 2.69
89 90 3.933332 ACAGCGCTAGAATTAGGTCAAAC 59.067 43.478 10.99 0.00 0.00 2.93
90 91 3.932710 CAGCGCTAGAATTAGGTCAAACA 59.067 43.478 10.99 0.00 0.00 2.83
91 92 4.033358 CAGCGCTAGAATTAGGTCAAACAG 59.967 45.833 10.99 0.00 0.00 3.16
92 93 4.081642 AGCGCTAGAATTAGGTCAAACAGA 60.082 41.667 8.99 0.00 0.00 3.41
93 94 4.630069 GCGCTAGAATTAGGTCAAACAGAA 59.370 41.667 0.00 0.00 0.00 3.02
94 95 5.220491 GCGCTAGAATTAGGTCAAACAGAAG 60.220 44.000 0.00 0.00 0.00 2.85
95 96 5.220491 CGCTAGAATTAGGTCAAACAGAAGC 60.220 44.000 0.00 0.00 0.00 3.86
96 97 5.065346 GCTAGAATTAGGTCAAACAGAAGCC 59.935 44.000 0.00 0.00 0.00 4.35
97 98 4.336280 AGAATTAGGTCAAACAGAAGCCC 58.664 43.478 0.00 0.00 0.00 5.19
98 99 2.178912 TTAGGTCAAACAGAAGCCCG 57.821 50.000 0.00 0.00 0.00 6.13
99 100 1.053424 TAGGTCAAACAGAAGCCCGT 58.947 50.000 0.00 0.00 0.00 5.28
100 101 0.535102 AGGTCAAACAGAAGCCCGTG 60.535 55.000 0.00 0.00 0.00 4.94
101 102 1.515521 GGTCAAACAGAAGCCCGTGG 61.516 60.000 0.00 0.00 0.00 4.94
102 103 1.228124 TCAAACAGAAGCCCGTGGG 60.228 57.895 0.00 0.00 38.57 4.61
112 113 4.204028 CCCGTGGGGCCCATAAGG 62.204 72.222 31.48 29.13 35.35 2.69
113 114 3.416880 CCGTGGGGCCCATAAGGT 61.417 66.667 31.48 0.00 35.28 3.50
114 115 2.192175 CGTGGGGCCCATAAGGTC 59.808 66.667 31.48 13.95 40.81 3.85
115 116 2.675242 CGTGGGGCCCATAAGGTCA 61.675 63.158 31.48 7.44 44.85 4.02
116 117 1.694856 GTGGGGCCCATAAGGTCAA 59.305 57.895 31.48 0.00 44.85 3.18
117 118 0.395724 GTGGGGCCCATAAGGTCAAG 60.396 60.000 31.48 0.00 44.85 3.02
118 119 1.230212 GGGGCCCATAAGGTCAAGG 59.770 63.158 26.86 0.00 44.85 3.61
119 120 1.230212 GGGCCCATAAGGTCAAGGG 59.770 63.158 19.95 0.00 44.85 3.95
120 121 1.230212 GGCCCATAAGGTCAAGGGG 59.770 63.158 0.00 0.00 41.40 4.79
122 123 1.152963 CCCATAAGGTCAAGGGGCG 60.153 63.158 0.00 0.00 37.66 6.13
123 124 1.607612 CCATAAGGTCAAGGGGCGT 59.392 57.895 0.00 0.00 0.00 5.68
137 138 3.741476 GCGTGCCCCTTGAGCTTG 61.741 66.667 0.00 0.00 0.00 4.01
139 140 2.620112 CGTGCCCCTTGAGCTTGTG 61.620 63.158 0.00 0.00 0.00 3.33
170 171 1.971695 GTCTTTTGGCCCTCCACCG 60.972 63.158 0.00 0.00 43.33 4.94
177 178 2.034221 GCCCTCCACCGAAGCTTT 59.966 61.111 0.00 0.00 0.00 3.51
181 182 1.003233 CCCTCCACCGAAGCTTTTAGT 59.997 52.381 0.00 0.00 0.00 2.24
183 184 2.550208 CCTCCACCGAAGCTTTTAGTGT 60.550 50.000 17.79 3.55 0.00 3.55
184 185 2.737252 CTCCACCGAAGCTTTTAGTGTC 59.263 50.000 17.79 0.00 0.00 3.67
245 247 4.452825 TGTTTGGACTTCGTTTGGTATGA 58.547 39.130 0.00 0.00 0.00 2.15
254 256 5.240623 ACTTCGTTTGGTATGATTTTCTGCA 59.759 36.000 0.00 0.00 0.00 4.41
275 277 6.091437 TGCAAAACAAAGAAAATGGCAAAAG 58.909 32.000 0.00 0.00 0.00 2.27
283 285 8.355913 ACAAAGAAAATGGCAAAAGAAAAACAA 58.644 25.926 0.00 0.00 0.00 2.83
287 289 8.791675 AGAAAATGGCAAAAGAAAAACAAGAAA 58.208 25.926 0.00 0.00 0.00 2.52
288 290 9.571810 GAAAATGGCAAAAGAAAAACAAGAAAT 57.428 25.926 0.00 0.00 0.00 2.17
294 296 6.403527 GCAAAAGAAAAACAAGAAATGGCACT 60.404 34.615 0.00 0.00 0.00 4.40
329 331 9.816787 AGTTAATAGGTTAGTTCCCAAAAATGA 57.183 29.630 0.00 0.00 0.00 2.57
336 338 9.990868 AGGTTAGTTCCCAAAAATGATATAAGT 57.009 29.630 0.00 0.00 0.00 2.24
341 343 7.180051 AGTTCCCAAAAATGATATAAGTTGGCA 59.820 33.333 0.00 0.00 35.27 4.92
424 428 7.548097 GTTGGAGACGTATATCACATATCCAT 58.452 38.462 0.00 0.00 33.68 3.41
439 443 8.435982 TCACATATCCATCACAAATGGTATACA 58.564 33.333 5.01 0.00 40.06 2.29
456 460 6.072397 TGGTATACATTGCCACTAACAACAAC 60.072 38.462 5.01 0.00 0.00 3.32
467 481 2.704725 AACAACAACTATTGCAGCGG 57.295 45.000 0.00 0.00 32.47 5.52
471 485 1.442769 ACAACTATTGCAGCGGAGTG 58.557 50.000 0.00 0.00 0.00 3.51
500 514 4.270008 TCTCAACCATCGACATGACTCTA 58.730 43.478 0.00 0.00 30.57 2.43
506 520 3.131223 CCATCGACATGACTCTAACCACT 59.869 47.826 0.00 0.00 30.57 4.00
519 533 6.868622 ACTCTAACCACTATTGTAGCTCAAG 58.131 40.000 0.00 0.00 39.55 3.02
540 554 3.402681 CCGGCTGACCACCAGGAT 61.403 66.667 0.00 0.00 43.13 3.24
568 582 1.000955 GAACCTCTCTCCAACAAGCGA 59.999 52.381 0.00 0.00 0.00 4.93
571 585 1.066573 CCTCTCTCCAACAAGCGATGT 60.067 52.381 0.00 0.00 46.82 3.06
578 592 5.109210 TCTCCAACAAGCGATGTAGTATTG 58.891 41.667 0.00 0.00 42.99 1.90
603 617 4.169271 CGGCCTAGGACGTATGGA 57.831 61.111 29.73 0.00 42.51 3.41
615 629 3.448686 GACGTATGGATCCAACTCACAG 58.551 50.000 20.67 12.24 0.00 3.66
616 630 2.832129 ACGTATGGATCCAACTCACAGT 59.168 45.455 20.67 12.78 0.00 3.55
662 677 0.179084 TCCGCATAGGCTTTTCTCGG 60.179 55.000 0.00 0.00 40.77 4.63
663 678 0.462047 CCGCATAGGCTTTTCTCGGT 60.462 55.000 0.00 0.00 38.10 4.69
666 681 1.666189 GCATAGGCTTTTCTCGGTGAC 59.334 52.381 0.00 0.00 36.96 3.67
689 704 0.178891 AAGGAGAGGGAGTTGGCAGA 60.179 55.000 0.00 0.00 0.00 4.26
707 722 1.151899 AGGGTGTTGCCTAGGTGGA 60.152 57.895 11.31 0.00 38.35 4.02
714 729 0.320374 TTGCCTAGGTGGAAGACGTG 59.680 55.000 11.31 0.00 38.35 4.49
728 743 2.279517 CGTGATGGTAGCGGCTCC 60.280 66.667 5.39 8.66 0.00 4.70
747 762 4.321156 GCTCCAGTTGCATGTCAAATAACA 60.321 41.667 4.47 0.00 36.26 2.41
849 874 2.613595 TGATTGGAATTCCGCTCAATCG 59.386 45.455 20.65 0.00 44.80 3.34
850 875 2.394930 TTGGAATTCCGCTCAATCGA 57.605 45.000 19.57 0.00 39.43 3.59
919 944 7.990886 TCTAATAACCTAGTTTGCTTGTATGGG 59.009 37.037 0.00 0.00 0.00 4.00
959 984 5.880901 ACTACCCTCAATGTTCATGACTTT 58.119 37.500 0.00 0.00 0.00 2.66
960 985 6.306987 ACTACCCTCAATGTTCATGACTTTT 58.693 36.000 0.00 0.00 0.00 2.27
961 986 6.777580 ACTACCCTCAATGTTCATGACTTTTT 59.222 34.615 0.00 0.00 0.00 1.94
997 1022 5.803967 CGGTCTAGTTAGTTGACAATGTACC 59.196 44.000 4.28 0.00 32.84 3.34
1046 1071 9.003658 CACCACATTATTCTCAGTAGTTCTTTT 57.996 33.333 0.00 0.00 0.00 2.27
1075 1100 3.127533 CTGTGGTAGCCGCCAAGC 61.128 66.667 0.00 0.00 40.68 4.01
1174 1199 4.464951 TCATACCTCCGCTTCTTAACAAGA 59.535 41.667 0.00 0.00 35.26 3.02
1218 1243 5.449177 GGATCTATACACAAAGTTTGGCAGC 60.449 44.000 19.45 0.00 34.12 5.25
1236 1261 3.550030 GCAGCGTGTTCACCATAAACTTT 60.550 43.478 0.00 0.00 0.00 2.66
1245 1270 4.069304 TCACCATAAACTTTCTTGGACCG 58.931 43.478 9.40 0.00 33.36 4.79
1339 1364 3.892588 GGGTAATTTGTTGGAGTTCACCA 59.107 43.478 0.00 0.00 38.24 4.17
1367 1392 3.522759 TGTATGGTCAAGAGGTTGGGTA 58.477 45.455 0.00 0.00 34.09 3.69
1380 1405 1.134610 GTTGGGTATGGGGTAGACACG 60.135 57.143 0.00 0.00 0.00 4.49
1482 1507 6.681729 TTTCAAGAAGTGGAGGTATGTACT 57.318 37.500 0.00 0.00 0.00 2.73
1487 1512 7.122353 TCAAGAAGTGGAGGTATGTACTTAGAC 59.878 40.741 0.00 0.00 33.83 2.59
1562 1590 9.946165 TGATTAAGTACTGATAAGTACGTGATG 57.054 33.333 15.40 0.00 46.60 3.07
1608 1636 3.258372 TCACCTTTCTAGCACGAGTCATT 59.742 43.478 0.00 0.00 0.00 2.57
1621 1649 3.501062 ACGAGTCATTCACTTAGACGTGA 59.499 43.478 0.00 0.00 41.82 4.35
1952 1984 7.432252 GCAAACATTATCAGTTTCTTATTCCCG 59.568 37.037 0.00 0.00 37.10 5.14
2159 2200 5.409826 CCTCATTTCTACTTCAAGACACACC 59.590 44.000 0.00 0.00 0.00 4.16
2218 2259 4.202010 GCTGAGCAACACCAAGTTCTTAAA 60.202 41.667 0.00 0.00 38.74 1.52
2250 2291 6.555315 GTCGAGGAGCAAAAACATATCATTT 58.445 36.000 0.00 0.00 0.00 2.32
2261 2302 8.794406 CAAAAACATATCATTTGTAAGTACGGC 58.206 33.333 0.00 0.00 31.17 5.68
2274 2315 1.755380 AGTACGGCAACCAGATAGACC 59.245 52.381 0.00 0.00 0.00 3.85
2277 2318 0.462047 CGGCAACCAGATAGACCACC 60.462 60.000 0.00 0.00 0.00 4.61
2360 2401 1.094785 CAGGGCCAGTGTTATTTCGG 58.905 55.000 6.18 0.00 0.00 4.30
2381 2422 4.437390 CGGAAGGCACATAAGACATTCAAC 60.437 45.833 0.00 0.00 0.00 3.18
2402 2443 1.963515 GTGCACACCAAGGAAGGAAAT 59.036 47.619 13.17 0.00 0.00 2.17
2484 2525 4.475381 TGCCATACATTTACAAGGACCCTA 59.525 41.667 0.00 0.00 0.00 3.53
2652 2693 6.183360 CCATCTTCTAAGAAACTTTGAGCTCG 60.183 42.308 9.64 0.00 38.77 5.03
2775 2816 8.882415 AAATTACTCGAGTTGACAAGAAAGTA 57.118 30.769 25.44 0.00 0.00 2.24
2793 2834 9.747293 AAGAAAGTAAAAGTCCTATATAGACGC 57.253 33.333 11.53 1.32 39.31 5.19
2794 2835 8.910944 AGAAAGTAAAAGTCCTATATAGACGCA 58.089 33.333 11.53 0.00 39.31 5.24
2891 2933 3.314357 AGCCGTTCACTTCCTTTGTAAAC 59.686 43.478 0.00 0.00 0.00 2.01
2892 2934 3.549423 GCCGTTCACTTCCTTTGTAAACC 60.549 47.826 0.00 0.00 0.00 3.27
2910 2952 1.472662 CCCTAGATGATTCCCCGCGT 61.473 60.000 4.92 0.00 0.00 6.01
2932 2974 1.523938 GCTGCGGGAAGGTATGGTC 60.524 63.158 0.00 0.00 0.00 4.02
2961 3003 4.844349 AGGTCCACTATGTAACATTGCT 57.156 40.909 0.00 0.00 0.00 3.91
2980 3022 8.037166 ACATTGCTTGAATTTTCCTTTAGGATC 58.963 33.333 0.00 0.00 44.98 3.36
3005 3047 9.507329 TCAATCATGGTAATCTAATAAGAAGGC 57.493 33.333 0.00 0.00 34.73 4.35
3009 3051 9.288576 TCATGGTAATCTAATAAGAAGGCATTG 57.711 33.333 0.00 0.00 34.73 2.82
3103 3147 1.168714 GAGGTCTGCACATTTGGGTC 58.831 55.000 0.00 0.00 0.00 4.46
3149 3193 5.126869 TGACATGGCAGAAAAGAAGTTGAAA 59.873 36.000 0.00 0.00 0.00 2.69
3191 3331 8.125978 AGGAAAATCAGACTGCATATTTGAAA 57.874 30.769 0.00 0.00 0.00 2.69
3231 3371 1.644509 TATGACCCCATCCTCCATCG 58.355 55.000 0.00 0.00 34.31 3.84
3372 3512 5.994054 AGCATGATAAAGTGATATTGCGAGT 59.006 36.000 0.00 0.00 0.00 4.18
3373 3513 6.484643 AGCATGATAAAGTGATATTGCGAGTT 59.515 34.615 0.00 0.00 0.00 3.01
3374 3514 7.657354 AGCATGATAAAGTGATATTGCGAGTTA 59.343 33.333 0.00 0.00 0.00 2.24
3375 3515 8.282592 GCATGATAAAGTGATATTGCGAGTTAA 58.717 33.333 0.00 0.00 0.00 2.01
3392 3533 8.537223 TGCGAGTTAATTAGACTTTTATTAGCG 58.463 33.333 0.00 0.00 0.00 4.26
3410 3551 2.684881 AGCGAAGAACCATTGGCATTAG 59.315 45.455 1.54 0.00 36.47 1.73
3426 3567 4.020218 GGCATTAGGATGATGTAGGCACTA 60.020 45.833 0.00 0.00 36.01 2.74
3434 3575 6.273260 AGGATGATGTAGGCACTAACCAATAT 59.727 38.462 0.00 0.00 45.48 1.28
3458 3626 5.499313 TCAAGATAGTTGATGTGCATTCCA 58.501 37.500 0.00 0.00 0.00 3.53
3459 3627 5.587443 TCAAGATAGTTGATGTGCATTCCAG 59.413 40.000 0.00 0.00 0.00 3.86
3460 3628 5.108187 AGATAGTTGATGTGCATTCCAGT 57.892 39.130 0.00 0.00 0.00 4.00
3462 3630 3.928727 AGTTGATGTGCATTCCAGTTG 57.071 42.857 0.00 0.00 0.00 3.16
3463 3631 2.559668 AGTTGATGTGCATTCCAGTTGG 59.440 45.455 0.00 0.00 0.00 3.77
3464 3632 2.291209 TGATGTGCATTCCAGTTGGT 57.709 45.000 0.00 0.00 36.34 3.67
3465 3633 2.161855 TGATGTGCATTCCAGTTGGTC 58.838 47.619 0.00 0.00 36.34 4.02
3466 3634 2.161855 GATGTGCATTCCAGTTGGTCA 58.838 47.619 0.00 0.00 36.34 4.02
3467 3635 1.317613 TGTGCATTCCAGTTGGTCAC 58.682 50.000 0.00 4.01 36.34 3.67
3468 3636 0.598065 GTGCATTCCAGTTGGTCACC 59.402 55.000 0.00 0.00 36.34 4.02
3469 3637 0.888736 TGCATTCCAGTTGGTCACCG 60.889 55.000 0.00 0.00 36.34 4.94
3470 3638 0.889186 GCATTCCAGTTGGTCACCGT 60.889 55.000 0.00 0.00 36.34 4.83
3471 3639 1.604604 CATTCCAGTTGGTCACCGTT 58.395 50.000 0.00 0.00 36.34 4.44
3472 3640 1.535462 CATTCCAGTTGGTCACCGTTC 59.465 52.381 0.00 0.00 36.34 3.95
3473 3641 0.179040 TTCCAGTTGGTCACCGTTCC 60.179 55.000 0.00 0.00 36.34 3.62
3474 3642 1.147376 CCAGTTGGTCACCGTTCCA 59.853 57.895 0.00 0.00 0.00 3.53
3475 3643 0.884704 CCAGTTGGTCACCGTTCCAG 60.885 60.000 0.00 0.00 35.05 3.86
3476 3644 1.227853 AGTTGGTCACCGTTCCAGC 60.228 57.895 0.00 0.00 35.05 4.85
3477 3645 1.227853 GTTGGTCACCGTTCCAGCT 60.228 57.895 0.00 0.00 35.05 4.24
3478 3646 1.227823 TTGGTCACCGTTCCAGCTG 60.228 57.895 6.78 6.78 35.05 4.24
3479 3647 3.050275 GGTCACCGTTCCAGCTGC 61.050 66.667 8.66 0.00 0.00 5.25
3480 3648 2.280797 GTCACCGTTCCAGCTGCA 60.281 61.111 8.66 0.00 0.00 4.41
3481 3649 2.031012 TCACCGTTCCAGCTGCAG 59.969 61.111 10.11 10.11 0.00 4.41
3482 3650 2.281070 CACCGTTCCAGCTGCAGT 60.281 61.111 16.64 0.00 0.00 4.40
3483 3651 2.031163 ACCGTTCCAGCTGCAGTC 59.969 61.111 16.64 7.83 0.00 3.51
3484 3652 2.743928 CCGTTCCAGCTGCAGTCC 60.744 66.667 16.64 0.00 0.00 3.85
3485 3653 2.345244 CGTTCCAGCTGCAGTCCT 59.655 61.111 16.64 1.18 0.00 3.85
3486 3654 1.591703 CGTTCCAGCTGCAGTCCTA 59.408 57.895 16.64 0.00 0.00 2.94
3487 3655 0.037326 CGTTCCAGCTGCAGTCCTAA 60.037 55.000 16.64 2.63 0.00 2.69
3488 3656 1.406069 CGTTCCAGCTGCAGTCCTAAT 60.406 52.381 16.64 0.00 0.00 1.73
3489 3657 2.716217 GTTCCAGCTGCAGTCCTAATT 58.284 47.619 16.64 0.00 0.00 1.40
3490 3658 2.680339 GTTCCAGCTGCAGTCCTAATTC 59.320 50.000 16.64 0.00 0.00 2.17
3505 3673 6.321181 AGTCCTAATTCTCTAGCTTGACAGAG 59.679 42.308 5.05 5.05 39.77 3.35
3511 3679 5.791336 TCTCTAGCTTGACAGAGTGAAAA 57.209 39.130 10.35 0.00 39.48 2.29
3513 3681 4.632153 TCTAGCTTGACAGAGTGAAAACC 58.368 43.478 0.00 0.00 0.00 3.27
3514 3682 2.213499 AGCTTGACAGAGTGAAAACCG 58.787 47.619 0.00 0.00 0.00 4.44
3530 3698 7.229907 AGTGAAAACCGTACCAAATTAAGATGT 59.770 33.333 0.00 0.00 0.00 3.06
3568 3736 5.643379 ATGGACTTAAATGCAACGTGAAT 57.357 34.783 0.00 0.00 0.00 2.57
3618 3786 4.635765 TCCTGCAGCAGAATGTAACAATAC 59.364 41.667 24.90 0.00 39.31 1.89
3634 3802 9.263446 TGTAACAATACAGGTATTCCTTAGAGT 57.737 33.333 1.79 0.00 43.07 3.24
3635 3803 9.530633 GTAACAATACAGGTATTCCTTAGAGTG 57.469 37.037 1.79 0.00 43.07 3.51
3636 3804 7.973048 ACAATACAGGTATTCCTTAGAGTGA 57.027 36.000 1.79 0.00 43.07 3.41
3637 3805 8.375493 ACAATACAGGTATTCCTTAGAGTGAA 57.625 34.615 1.79 0.00 43.07 3.18
3638 3806 8.993424 ACAATACAGGTATTCCTTAGAGTGAAT 58.007 33.333 1.79 0.00 43.07 2.57
3639 3807 9.838339 CAATACAGGTATTCCTTAGAGTGAATT 57.162 33.333 1.79 0.00 43.07 2.17
3641 3809 6.890293 ACAGGTATTCCTTAGAGTGAATTCC 58.110 40.000 2.27 0.00 43.07 3.01
3642 3810 5.986135 CAGGTATTCCTTAGAGTGAATTCCG 59.014 44.000 2.27 0.00 43.07 4.30
3643 3811 5.070580 AGGTATTCCTTAGAGTGAATTCCGG 59.929 44.000 2.27 0.00 42.12 5.14
3644 3812 5.163332 GGTATTCCTTAGAGTGAATTCCGGT 60.163 44.000 0.00 0.00 31.55 5.28
3645 3813 4.903045 TTCCTTAGAGTGAATTCCGGTT 57.097 40.909 0.00 0.00 0.00 4.44
3646 3814 4.903045 TCCTTAGAGTGAATTCCGGTTT 57.097 40.909 0.00 0.00 0.00 3.27
3647 3815 5.237236 TCCTTAGAGTGAATTCCGGTTTT 57.763 39.130 0.00 0.00 0.00 2.43
3648 3816 5.627135 TCCTTAGAGTGAATTCCGGTTTTT 58.373 37.500 0.00 0.00 0.00 1.94
3649 3817 6.771573 TCCTTAGAGTGAATTCCGGTTTTTA 58.228 36.000 0.00 0.00 0.00 1.52
3650 3818 6.652062 TCCTTAGAGTGAATTCCGGTTTTTAC 59.348 38.462 0.00 3.67 0.00 2.01
3651 3819 6.128090 CCTTAGAGTGAATTCCGGTTTTTACC 60.128 42.308 0.00 0.00 0.00 2.85
3652 3820 4.077108 AGAGTGAATTCCGGTTTTTACCC 58.923 43.478 0.00 0.00 0.00 3.69
3653 3821 3.159472 AGTGAATTCCGGTTTTTACCCC 58.841 45.455 0.00 0.00 0.00 4.95
3654 3822 2.231964 GTGAATTCCGGTTTTTACCCCC 59.768 50.000 0.00 0.00 0.00 5.40
3655 3823 2.110365 TGAATTCCGGTTTTTACCCCCT 59.890 45.455 0.00 0.00 0.00 4.79
3656 3824 3.333082 TGAATTCCGGTTTTTACCCCCTA 59.667 43.478 0.00 0.00 0.00 3.53
3657 3825 4.017314 TGAATTCCGGTTTTTACCCCCTAT 60.017 41.667 0.00 0.00 0.00 2.57
3658 3826 4.613265 ATTCCGGTTTTTACCCCCTATT 57.387 40.909 0.00 0.00 0.00 1.73
3659 3827 4.401048 TTCCGGTTTTTACCCCCTATTT 57.599 40.909 0.00 0.00 0.00 1.40
3660 3828 4.401048 TCCGGTTTTTACCCCCTATTTT 57.599 40.909 0.00 0.00 0.00 1.82
3661 3829 4.087907 TCCGGTTTTTACCCCCTATTTTG 58.912 43.478 0.00 0.00 0.00 2.44
3662 3830 4.087907 CCGGTTTTTACCCCCTATTTTGA 58.912 43.478 0.00 0.00 0.00 2.69
3663 3831 4.082081 CCGGTTTTTACCCCCTATTTTGAC 60.082 45.833 0.00 0.00 0.00 3.18
3664 3832 4.768448 CGGTTTTTACCCCCTATTTTGACT 59.232 41.667 0.00 0.00 0.00 3.41
3665 3833 5.244402 CGGTTTTTACCCCCTATTTTGACTT 59.756 40.000 0.00 0.00 0.00 3.01
3666 3834 6.239373 CGGTTTTTACCCCCTATTTTGACTTT 60.239 38.462 0.00 0.00 0.00 2.66
3667 3835 7.511268 GGTTTTTACCCCCTATTTTGACTTTT 58.489 34.615 0.00 0.00 0.00 2.27
3668 3836 7.994334 GGTTTTTACCCCCTATTTTGACTTTTT 59.006 33.333 0.00 0.00 0.00 1.94
3691 3859 7.399245 TTTGACACTAATTACCCCATTTAGC 57.601 36.000 0.00 0.00 0.00 3.09
3692 3860 5.120399 TGACACTAATTACCCCATTTAGCG 58.880 41.667 0.00 0.00 0.00 4.26
3693 3861 4.457466 ACACTAATTACCCCATTTAGCGG 58.543 43.478 0.00 0.00 0.00 5.52
3694 3862 3.818773 CACTAATTACCCCATTTAGCGGG 59.181 47.826 0.00 0.00 45.70 6.13
3714 3882 3.358118 GGATTTCATCCGTTTTACCCCA 58.642 45.455 0.00 0.00 40.13 4.96
3715 3883 3.958147 GGATTTCATCCGTTTTACCCCAT 59.042 43.478 0.00 0.00 40.13 4.00
3716 3884 4.404394 GGATTTCATCCGTTTTACCCCATT 59.596 41.667 0.00 0.00 40.13 3.16
3717 3885 5.105106 GGATTTCATCCGTTTTACCCCATTT 60.105 40.000 0.00 0.00 40.13 2.32
3718 3886 6.097129 GGATTTCATCCGTTTTACCCCATTTA 59.903 38.462 0.00 0.00 40.13 1.40
3719 3887 6.518208 TTTCATCCGTTTTACCCCATTTAG 57.482 37.500 0.00 0.00 0.00 1.85
3720 3888 3.949113 TCATCCGTTTTACCCCATTTAGC 59.051 43.478 0.00 0.00 0.00 3.09
3721 3889 3.436577 TCCGTTTTACCCCATTTAGCA 57.563 42.857 0.00 0.00 0.00 3.49
3722 3890 3.083293 TCCGTTTTACCCCATTTAGCAC 58.917 45.455 0.00 0.00 0.00 4.40
3723 3891 2.820787 CCGTTTTACCCCATTTAGCACA 59.179 45.455 0.00 0.00 0.00 4.57
3724 3892 3.256136 CCGTTTTACCCCATTTAGCACAA 59.744 43.478 0.00 0.00 0.00 3.33
3725 3893 4.481463 CGTTTTACCCCATTTAGCACAAG 58.519 43.478 0.00 0.00 0.00 3.16
3726 3894 4.022676 CGTTTTACCCCATTTAGCACAAGT 60.023 41.667 0.00 0.00 0.00 3.16
3727 3895 5.227152 GTTTTACCCCATTTAGCACAAGTG 58.773 41.667 0.00 0.00 0.00 3.16
3728 3896 2.675658 ACCCCATTTAGCACAAGTGT 57.324 45.000 1.79 0.00 0.00 3.55
3729 3897 2.957474 ACCCCATTTAGCACAAGTGTT 58.043 42.857 1.79 0.00 0.00 3.32
3730 3898 2.627699 ACCCCATTTAGCACAAGTGTTG 59.372 45.455 1.79 0.00 0.00 3.33
3731 3899 2.610232 CCCCATTTAGCACAAGTGTTGC 60.610 50.000 1.79 0.00 0.00 4.17
3732 3900 2.610232 CCCATTTAGCACAAGTGTTGCC 60.610 50.000 1.79 0.00 0.00 4.52
3733 3901 2.035704 CCATTTAGCACAAGTGTTGCCA 59.964 45.455 1.79 0.00 0.00 4.92
3734 3902 3.306225 CCATTTAGCACAAGTGTTGCCAT 60.306 43.478 1.79 0.00 0.00 4.40
3735 3903 4.082300 CCATTTAGCACAAGTGTTGCCATA 60.082 41.667 1.79 0.00 0.00 2.74
3736 3904 5.468592 CATTTAGCACAAGTGTTGCCATAA 58.531 37.500 1.79 0.00 0.00 1.90
3737 3905 5.720371 TTTAGCACAAGTGTTGCCATAAT 57.280 34.783 1.79 0.00 0.00 1.28
3738 3906 5.720371 TTAGCACAAGTGTTGCCATAATT 57.280 34.783 1.79 0.00 0.00 1.40
3739 3907 4.605640 AGCACAAGTGTTGCCATAATTT 57.394 36.364 1.79 0.00 0.00 1.82
3740 3908 5.720371 AGCACAAGTGTTGCCATAATTTA 57.280 34.783 1.79 0.00 0.00 1.40
3741 3909 5.469479 AGCACAAGTGTTGCCATAATTTAC 58.531 37.500 1.79 0.00 0.00 2.01
3742 3910 4.625311 GCACAAGTGTTGCCATAATTTACC 59.375 41.667 1.79 0.00 0.00 2.85
3743 3911 5.167845 CACAAGTGTTGCCATAATTTACCC 58.832 41.667 0.00 0.00 0.00 3.69
3744 3912 5.047377 CACAAGTGTTGCCATAATTTACCCT 60.047 40.000 0.00 0.00 0.00 4.34
3745 3913 5.185056 ACAAGTGTTGCCATAATTTACCCTC 59.815 40.000 0.00 0.00 0.00 4.30
3746 3914 5.193099 AGTGTTGCCATAATTTACCCTCT 57.807 39.130 0.00 0.00 0.00 3.69
3747 3915 5.580022 AGTGTTGCCATAATTTACCCTCTT 58.420 37.500 0.00 0.00 0.00 2.85
3748 3916 6.016555 AGTGTTGCCATAATTTACCCTCTTT 58.983 36.000 0.00 0.00 0.00 2.52
3749 3917 6.496911 AGTGTTGCCATAATTTACCCTCTTTT 59.503 34.615 0.00 0.00 0.00 2.27
3750 3918 7.672239 AGTGTTGCCATAATTTACCCTCTTTTA 59.328 33.333 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.010817 GTTTTGTCGCTGCCGCAAG 61.011 57.895 0.00 0.00 34.07 4.01
5 6 2.025441 GTTTTGTCGCTGCCGCAA 59.975 55.556 0.00 0.00 35.30 4.85
6 7 2.899838 AGTTTTGTCGCTGCCGCA 60.900 55.556 0.00 0.00 35.30 5.69
8 9 0.248458 AAACAGTTTTGTCGCTGCCG 60.248 50.000 0.00 0.00 36.23 5.69
9 10 1.477105 GAAACAGTTTTGTCGCTGCC 58.523 50.000 0.00 0.00 36.23 4.85
10 11 1.112459 CGAAACAGTTTTGTCGCTGC 58.888 50.000 0.00 0.00 36.23 5.25
11 12 2.030457 ACTCGAAACAGTTTTGTCGCTG 59.970 45.455 12.30 5.52 36.23 5.18
12 13 2.277084 ACTCGAAACAGTTTTGTCGCT 58.723 42.857 12.30 0.00 36.23 4.93
13 14 2.284417 AGACTCGAAACAGTTTTGTCGC 59.716 45.455 12.30 4.23 36.23 5.19
14 15 3.060473 GGAGACTCGAAACAGTTTTGTCG 60.060 47.826 12.30 6.37 36.23 4.35
15 16 3.247886 GGGAGACTCGAAACAGTTTTGTC 59.752 47.826 12.30 13.68 36.23 3.18
16 17 3.118371 AGGGAGACTCGAAACAGTTTTGT 60.118 43.478 12.30 6.58 39.87 2.83
17 18 3.467803 AGGGAGACTCGAAACAGTTTTG 58.532 45.455 6.92 6.92 0.00 2.44
18 19 3.729966 GAGGGAGACTCGAAACAGTTTT 58.270 45.455 0.00 0.00 36.29 2.43
19 20 3.388345 GAGGGAGACTCGAAACAGTTT 57.612 47.619 0.00 0.00 36.29 2.66
36 37 5.598417 CCATAAATCCAAAAACCCCTAGAGG 59.402 44.000 0.00 0.00 0.00 3.69
37 38 5.598417 CCCATAAATCCAAAAACCCCTAGAG 59.402 44.000 0.00 0.00 0.00 2.43
38 39 5.256626 TCCCATAAATCCAAAAACCCCTAGA 59.743 40.000 0.00 0.00 0.00 2.43
39 40 5.524535 TCCCATAAATCCAAAAACCCCTAG 58.475 41.667 0.00 0.00 0.00 3.02
40 41 5.554034 TCCCATAAATCCAAAAACCCCTA 57.446 39.130 0.00 0.00 0.00 3.53
41 42 4.427956 TCCCATAAATCCAAAAACCCCT 57.572 40.909 0.00 0.00 0.00 4.79
42 43 5.708736 ATTCCCATAAATCCAAAAACCCC 57.291 39.130 0.00 0.00 0.00 4.95
43 44 8.103935 TGTAAATTCCCATAAATCCAAAAACCC 58.896 33.333 0.00 0.00 0.00 4.11
44 45 9.161629 CTGTAAATTCCCATAAATCCAAAAACC 57.838 33.333 0.00 0.00 0.00 3.27
45 46 8.664798 GCTGTAAATTCCCATAAATCCAAAAAC 58.335 33.333 0.00 0.00 0.00 2.43
46 47 7.547370 CGCTGTAAATTCCCATAAATCCAAAAA 59.453 33.333 0.00 0.00 0.00 1.94
47 48 7.038659 CGCTGTAAATTCCCATAAATCCAAAA 58.961 34.615 0.00 0.00 0.00 2.44
48 49 6.568869 CGCTGTAAATTCCCATAAATCCAAA 58.431 36.000 0.00 0.00 0.00 3.28
49 50 5.451242 GCGCTGTAAATTCCCATAAATCCAA 60.451 40.000 0.00 0.00 0.00 3.53
50 51 4.037446 GCGCTGTAAATTCCCATAAATCCA 59.963 41.667 0.00 0.00 0.00 3.41
51 52 4.278419 AGCGCTGTAAATTCCCATAAATCC 59.722 41.667 10.39 0.00 0.00 3.01
52 53 5.438761 AGCGCTGTAAATTCCCATAAATC 57.561 39.130 10.39 0.00 0.00 2.17
53 54 6.296026 TCTAGCGCTGTAAATTCCCATAAAT 58.704 36.000 22.90 0.00 0.00 1.40
54 55 5.676552 TCTAGCGCTGTAAATTCCCATAAA 58.323 37.500 22.90 0.00 0.00 1.40
55 56 5.284861 TCTAGCGCTGTAAATTCCCATAA 57.715 39.130 22.90 0.00 0.00 1.90
56 57 4.948341 TCTAGCGCTGTAAATTCCCATA 57.052 40.909 22.90 0.00 0.00 2.74
57 58 3.838244 TCTAGCGCTGTAAATTCCCAT 57.162 42.857 22.90 0.00 0.00 4.00
58 59 3.620427 TTCTAGCGCTGTAAATTCCCA 57.380 42.857 22.90 0.00 0.00 4.37
59 60 5.179555 CCTAATTCTAGCGCTGTAAATTCCC 59.820 44.000 22.90 0.00 0.00 3.97
60 61 5.758784 ACCTAATTCTAGCGCTGTAAATTCC 59.241 40.000 22.90 0.00 0.00 3.01
61 62 6.479001 TGACCTAATTCTAGCGCTGTAAATTC 59.521 38.462 22.90 10.95 0.00 2.17
62 63 6.346096 TGACCTAATTCTAGCGCTGTAAATT 58.654 36.000 22.90 22.25 0.00 1.82
63 64 5.914033 TGACCTAATTCTAGCGCTGTAAAT 58.086 37.500 22.90 13.66 0.00 1.40
64 65 5.333299 TGACCTAATTCTAGCGCTGTAAA 57.667 39.130 22.90 11.80 0.00 2.01
65 66 4.994907 TGACCTAATTCTAGCGCTGTAA 57.005 40.909 22.90 14.57 0.00 2.41
66 67 4.994907 TTGACCTAATTCTAGCGCTGTA 57.005 40.909 22.90 4.50 0.00 2.74
67 68 3.887621 TTGACCTAATTCTAGCGCTGT 57.112 42.857 22.90 6.27 0.00 4.40
68 69 3.932710 TGTTTGACCTAATTCTAGCGCTG 59.067 43.478 22.90 10.49 0.00 5.18
69 70 4.081642 TCTGTTTGACCTAATTCTAGCGCT 60.082 41.667 17.26 17.26 0.00 5.92
70 71 4.181578 TCTGTTTGACCTAATTCTAGCGC 58.818 43.478 0.00 0.00 0.00 5.92
71 72 5.220491 GCTTCTGTTTGACCTAATTCTAGCG 60.220 44.000 0.00 0.00 0.00 4.26
72 73 5.065346 GGCTTCTGTTTGACCTAATTCTAGC 59.935 44.000 0.00 0.00 0.00 3.42
73 74 5.586643 GGGCTTCTGTTTGACCTAATTCTAG 59.413 44.000 0.00 0.00 0.00 2.43
74 75 5.497474 GGGCTTCTGTTTGACCTAATTCTA 58.503 41.667 0.00 0.00 0.00 2.10
75 76 4.336280 GGGCTTCTGTTTGACCTAATTCT 58.664 43.478 0.00 0.00 0.00 2.40
76 77 3.127030 CGGGCTTCTGTTTGACCTAATTC 59.873 47.826 0.00 0.00 0.00 2.17
77 78 3.081804 CGGGCTTCTGTTTGACCTAATT 58.918 45.455 0.00 0.00 0.00 1.40
78 79 2.039879 ACGGGCTTCTGTTTGACCTAAT 59.960 45.455 0.00 0.00 0.00 1.73
79 80 1.418637 ACGGGCTTCTGTTTGACCTAA 59.581 47.619 0.00 0.00 0.00 2.69
80 81 1.053424 ACGGGCTTCTGTTTGACCTA 58.947 50.000 0.00 0.00 0.00 3.08
81 82 0.535102 CACGGGCTTCTGTTTGACCT 60.535 55.000 0.00 0.00 0.00 3.85
82 83 1.515521 CCACGGGCTTCTGTTTGACC 61.516 60.000 0.00 0.00 0.00 4.02
83 84 1.515521 CCCACGGGCTTCTGTTTGAC 61.516 60.000 0.00 0.00 0.00 3.18
84 85 1.228124 CCCACGGGCTTCTGTTTGA 60.228 57.895 0.00 0.00 0.00 2.69
85 86 2.268076 CCCCACGGGCTTCTGTTTG 61.268 63.158 0.00 0.00 35.35 2.93
86 87 2.115266 CCCCACGGGCTTCTGTTT 59.885 61.111 0.00 0.00 35.35 2.83
96 97 3.415650 GACCTTATGGGCCCCACGG 62.416 68.421 22.27 16.71 35.80 4.94
97 98 2.192175 GACCTTATGGGCCCCACG 59.808 66.667 22.27 4.47 35.80 4.94
98 99 0.395724 CTTGACCTTATGGGCCCCAC 60.396 60.000 22.27 3.14 42.00 4.61
99 100 1.580066 CCTTGACCTTATGGGCCCCA 61.580 60.000 22.27 4.05 42.00 4.96
100 101 1.230212 CCTTGACCTTATGGGCCCC 59.770 63.158 22.27 1.27 42.00 5.80
101 102 1.230212 CCCTTGACCTTATGGGCCC 59.770 63.158 17.59 17.59 42.00 5.80
102 103 1.230212 CCCCTTGACCTTATGGGCC 59.770 63.158 0.00 0.00 42.00 5.80
104 105 1.152963 CGCCCCTTGACCTTATGGG 60.153 63.158 0.00 0.00 39.37 4.00
105 106 0.748005 CACGCCCCTTGACCTTATGG 60.748 60.000 0.00 0.00 39.83 2.74
106 107 1.376609 GCACGCCCCTTGACCTTATG 61.377 60.000 0.00 0.00 0.00 1.90
107 108 1.077716 GCACGCCCCTTGACCTTAT 60.078 57.895 0.00 0.00 0.00 1.73
108 109 2.349755 GCACGCCCCTTGACCTTA 59.650 61.111 0.00 0.00 0.00 2.69
109 110 4.660938 GGCACGCCCCTTGACCTT 62.661 66.667 0.00 0.00 0.00 3.50
120 121 3.741476 CAAGCTCAAGGGGCACGC 61.741 66.667 0.00 0.00 43.76 5.34
121 122 2.281761 ACAAGCTCAAGGGGCACG 60.282 61.111 0.00 0.00 0.00 5.34
122 123 2.270986 CCACAAGCTCAAGGGGCAC 61.271 63.158 0.00 0.00 0.00 5.01
123 124 2.115910 CCACAAGCTCAAGGGGCA 59.884 61.111 0.00 0.00 0.00 5.36
170 171 5.301555 ACCAGAAGAGACACTAAAAGCTTC 58.698 41.667 0.00 0.00 33.72 3.86
177 178 6.928348 TTTATGGACCAGAAGAGACACTAA 57.072 37.500 1.13 0.00 0.00 2.24
209 211 7.323656 CGAAGTCCAAACATGATGAAACTTTAC 59.676 37.037 0.00 1.54 0.00 2.01
214 216 5.108385 ACGAAGTCCAAACATGATGAAAC 57.892 39.130 0.00 0.82 29.74 2.78
217 219 4.023279 CCAAACGAAGTCCAAACATGATGA 60.023 41.667 0.00 0.00 45.00 2.92
218 220 4.229096 CCAAACGAAGTCCAAACATGATG 58.771 43.478 0.00 0.00 45.00 3.07
222 224 5.067273 TCATACCAAACGAAGTCCAAACAT 58.933 37.500 0.00 0.00 45.00 2.71
245 247 6.974048 GCCATTTTCTTTGTTTTGCAGAAAAT 59.026 30.769 12.32 12.32 44.77 1.82
254 256 9.755804 TTTTTCTTTTGCCATTTTCTTTGTTTT 57.244 22.222 0.00 0.00 0.00 2.43
275 277 3.809279 CCCAGTGCCATTTCTTGTTTTTC 59.191 43.478 0.00 0.00 0.00 2.29
283 285 0.698238 TAGTGCCCAGTGCCATTTCT 59.302 50.000 0.00 0.00 40.16 2.52
287 289 0.405585 AACTTAGTGCCCAGTGCCAT 59.594 50.000 0.00 0.00 40.16 4.40
288 290 1.060729 TAACTTAGTGCCCAGTGCCA 58.939 50.000 0.00 0.00 40.16 4.92
294 296 6.879367 ACTAACCTATTAACTTAGTGCCCA 57.121 37.500 0.00 0.00 31.01 5.36
336 338 8.759481 TGAATCTTGTATGGTTTATATGCCAA 57.241 30.769 0.68 0.00 38.38 4.52
407 411 8.606602 CCATTTGTGATGGATATGTGATATACG 58.393 37.037 0.00 0.00 41.64 3.06
412 416 9.453572 GTATACCATTTGTGATGGATATGTGAT 57.546 33.333 11.75 0.00 41.64 3.06
413 417 8.435982 TGTATACCATTTGTGATGGATATGTGA 58.564 33.333 11.75 0.00 41.64 3.58
419 423 6.015180 GGCAATGTATACCATTTGTGATGGAT 60.015 38.462 11.75 4.26 41.93 3.41
424 428 5.260424 AGTGGCAATGTATACCATTTGTGA 58.740 37.500 0.00 0.00 41.93 3.58
439 443 5.010516 TGCAATAGTTGTTGTTAGTGGCAAT 59.989 36.000 0.00 0.00 0.00 3.56
445 449 3.188460 CCGCTGCAATAGTTGTTGTTAGT 59.812 43.478 0.00 0.00 0.00 2.24
456 460 0.461548 TCTCCACTCCGCTGCAATAG 59.538 55.000 0.00 0.00 0.00 1.73
467 481 3.674682 CGATGGTTGAGAACTCTCCACTC 60.675 52.174 16.09 13.88 42.20 3.51
471 485 2.231478 TGTCGATGGTTGAGAACTCTCC 59.769 50.000 4.30 6.55 42.20 3.71
532 546 2.070039 TTCGGGCCCTATCCTGGTG 61.070 63.158 22.43 0.00 33.26 4.17
540 554 1.076192 GAGAGAGGTTCGGGCCCTA 60.076 63.158 22.43 5.87 30.60 3.53
568 582 1.795768 CGATGGCGGCAATACTACAT 58.204 50.000 18.31 0.00 0.00 2.29
596 610 3.526931 ACTGTGAGTTGGATCCATACG 57.473 47.619 17.06 10.91 0.00 3.06
615 629 1.074889 TGTAGAGGGGGCTTTTCCAAC 59.925 52.381 0.00 0.00 36.21 3.77
616 630 1.451449 TGTAGAGGGGGCTTTTCCAA 58.549 50.000 0.00 0.00 36.21 3.53
662 677 0.528470 CTCCCTCTCCTTGTCGTCAC 59.472 60.000 0.00 0.00 0.00 3.67
663 678 0.112606 ACTCCCTCTCCTTGTCGTCA 59.887 55.000 0.00 0.00 0.00 4.35
666 681 0.247736 CCAACTCCCTCTCCTTGTCG 59.752 60.000 0.00 0.00 0.00 4.35
689 704 0.770557 TTCCACCTAGGCAACACCCT 60.771 55.000 9.30 0.00 40.58 4.34
707 722 1.153628 GCCGCTACCATCACGTCTT 60.154 57.895 0.00 0.00 0.00 3.01
714 729 0.811616 CAACTGGAGCCGCTACCATC 60.812 60.000 0.00 0.00 35.54 3.51
728 743 8.969121 TTTATCTGTTATTTGACATGCAACTG 57.031 30.769 0.00 0.00 35.91 3.16
747 762 9.234827 TGTCAGTGTCATTCAATTGATTTATCT 57.765 29.630 9.40 1.86 0.00 1.98
782 797 9.739276 AAGATATTGGATTGTCAACTTGTAAGA 57.261 29.630 0.00 0.00 0.00 2.10
961 986 0.608035 CTAGACCGGCCCTGCAAAAA 60.608 55.000 0.00 0.00 0.00 1.94
974 999 6.932947 AGGTACATTGTCAACTAACTAGACC 58.067 40.000 0.00 0.00 0.00 3.85
997 1022 1.099879 GCAGCTGCCCAGTCCATAAG 61.100 60.000 28.76 0.00 34.31 1.73
1046 1071 5.172934 CGGCTACCACAGTTACTATTGAAA 58.827 41.667 0.00 0.00 0.00 2.69
1054 1079 0.320946 TTGGCGGCTACCACAGTTAC 60.321 55.000 11.43 0.00 40.19 2.50
1058 1083 3.127533 GCTTGGCGGCTACCACAG 61.128 66.667 11.43 0.00 40.19 3.66
1098 1123 9.330063 AGTGGTCTTGTATACACATGATTATTG 57.670 33.333 4.68 0.00 39.99 1.90
1099 1124 9.905713 AAGTGGTCTTGTATACACATGATTATT 57.094 29.630 4.68 0.00 39.99 1.40
1100 1125 9.547753 GAAGTGGTCTTGTATACACATGATTAT 57.452 33.333 4.68 0.00 39.99 1.28
1112 1137 3.261897 CACAGGAGGAAGTGGTCTTGTAT 59.738 47.826 0.00 0.00 33.64 2.29
1218 1243 5.008217 TCCAAGAAAGTTTATGGTGAACACG 59.992 40.000 15.83 0.00 34.50 4.49
1236 1261 1.477685 GGGTCACCTTCGGTCCAAGA 61.478 60.000 0.00 0.00 31.02 3.02
1367 1392 2.363276 TCGCCGTGTCTACCCCAT 60.363 61.111 0.00 0.00 0.00 4.00
1598 1626 3.604198 CACGTCTAAGTGAATGACTCGTG 59.396 47.826 0.00 0.00 44.43 4.35
1621 1649 9.760926 TGATAGTATCTATAGCTGGTGAGAAAT 57.239 33.333 11.40 0.00 0.00 2.17
1693 1721 8.812972 AGCATTAATCCTATTGCAATGATTCAT 58.187 29.630 22.27 15.34 37.03 2.57
1695 1723 8.922676 CAAGCATTAATCCTATTGCAATGATTC 58.077 33.333 22.27 10.43 34.12 2.52
1756 1788 2.109126 GCAAAGTAGGCCTGCGGAG 61.109 63.158 17.99 10.28 0.00 4.63
1833 1865 1.178276 AAGCACCGACTAGAGGTCAG 58.822 55.000 10.84 4.13 44.70 3.51
1864 1896 3.884895 AGTATCATTTGATGCCGAACCA 58.115 40.909 3.30 0.00 37.80 3.67
1952 1984 4.201744 CGGTTTGTCGGTGTTGGAATATAC 60.202 45.833 0.00 0.00 0.00 1.47
2159 2200 7.421599 CAGTCCATATACTAGTGTGAGAACTG 58.578 42.308 5.39 8.89 0.00 3.16
2250 2291 4.018490 TCTATCTGGTTGCCGTACTTACA 58.982 43.478 0.00 0.00 0.00 2.41
2261 2302 2.292267 GCATGGTGGTCTATCTGGTTG 58.708 52.381 0.00 0.00 0.00 3.77
2274 2315 2.014857 CATCTCTGACAAGGCATGGTG 58.985 52.381 0.00 0.00 0.00 4.17
2277 2318 2.704464 TCCATCTCTGACAAGGCATG 57.296 50.000 0.00 0.00 0.00 4.06
2344 2385 1.743394 CCTTCCGAAATAACACTGGCC 59.257 52.381 0.00 0.00 0.00 5.36
2360 2401 4.154195 ACGTTGAATGTCTTATGTGCCTTC 59.846 41.667 0.00 0.00 0.00 3.46
2381 2422 0.817634 TTCCTTCCTTGGTGTGCACG 60.818 55.000 13.13 0.00 0.00 5.34
2456 2497 4.398988 TCCTTGTAAATGTATGGCAGCTTG 59.601 41.667 0.00 0.00 0.00 4.01
2652 2693 5.124617 CCTTTGGGAAAGAAGACATTAGCTC 59.875 44.000 0.00 0.00 41.02 4.09
2701 2742 8.209917 ACTTATCATTACTTTTCCTTTAGGCG 57.790 34.615 0.00 0.00 34.44 5.52
2793 2834 3.745332 TCGTGCAAGCAAATAGACATG 57.255 42.857 0.00 0.00 0.00 3.21
2794 2835 3.501828 TGTTCGTGCAAGCAAATAGACAT 59.498 39.130 0.00 0.00 0.00 3.06
2852 2894 4.003648 ACGGCTATTTATAAGGCATGCTC 58.996 43.478 18.92 7.89 39.38 4.26
2891 2933 1.293498 CGCGGGGAATCATCTAGGG 59.707 63.158 0.00 0.00 0.00 3.53
2892 2934 0.319900 CACGCGGGGAATCATCTAGG 60.320 60.000 12.47 0.00 0.00 3.02
2910 2952 0.676466 CATACCTTCCCGCAGCAACA 60.676 55.000 0.00 0.00 0.00 3.33
2980 3022 9.288576 TGCCTTCTTATTAGATTACCATGATTG 57.711 33.333 0.00 0.00 0.00 2.67
3000 3042 7.573968 ACTCCTATAATTTGACAATGCCTTC 57.426 36.000 0.00 0.00 0.00 3.46
3037 3081 5.220931 GCTTAGGTTTAGTGCCTTGATCATG 60.221 44.000 0.00 0.00 37.54 3.07
3087 3131 1.620822 AAGGACCCAAATGTGCAGAC 58.379 50.000 0.00 0.00 0.00 3.51
3128 3172 5.232838 GTGTTTCAACTTCTTTTCTGCCATG 59.767 40.000 0.00 0.00 0.00 3.66
3149 3193 4.574674 TTCCTTTCATATCTGCTGGTGT 57.425 40.909 0.00 0.00 0.00 4.16
3191 3331 9.717942 GTCATATGATCAAAAGGTTCTAGCTAT 57.282 33.333 9.02 0.00 0.00 2.97
3231 3371 6.694411 GGCAAATGATCATGTGAAGACATTAC 59.306 38.462 27.01 7.72 41.12 1.89
3342 3482 8.857216 GCAATATCACTTTATCATGCTATTTGC 58.143 33.333 0.00 0.00 43.25 3.68
3358 3498 9.601217 AAAGTCTAATTAACTCGCAATATCACT 57.399 29.630 2.22 0.00 0.00 3.41
3374 3514 9.444600 TGGTTCTTCGCTAATAAAAGTCTAATT 57.555 29.630 0.00 0.00 0.00 1.40
3375 3515 9.614792 ATGGTTCTTCGCTAATAAAAGTCTAAT 57.385 29.630 0.00 0.00 0.00 1.73
3376 3516 9.444600 AATGGTTCTTCGCTAATAAAAGTCTAA 57.555 29.630 0.00 0.00 0.00 2.10
3392 3533 4.889409 TCATCCTAATGCCAATGGTTCTTC 59.111 41.667 0.00 0.00 32.58 2.87
3410 3551 3.838244 TGGTTAGTGCCTACATCATCC 57.162 47.619 0.00 0.00 0.00 3.51
3426 3567 8.408601 GCACATCAACTATCTTGAATATTGGTT 58.591 33.333 0.00 0.00 31.55 3.67
3434 3575 5.945191 TGGAATGCACATCAACTATCTTGAA 59.055 36.000 0.00 0.00 31.55 2.69
3458 3626 1.227853 GCTGGAACGGTGACCAACT 60.228 57.895 1.11 0.00 36.83 3.16
3459 3627 1.227853 AGCTGGAACGGTGACCAAC 60.228 57.895 1.11 4.85 36.83 3.77
3460 3628 1.227823 CAGCTGGAACGGTGACCAA 60.228 57.895 5.57 0.00 36.83 3.67
3462 3630 3.050275 GCAGCTGGAACGGTGACC 61.050 66.667 17.12 0.00 36.83 4.02
3463 3631 2.280797 TGCAGCTGGAACGGTGAC 60.281 61.111 17.12 0.00 36.83 3.67
3464 3632 2.031012 CTGCAGCTGGAACGGTGA 59.969 61.111 17.12 0.00 36.83 4.02
3465 3633 2.281070 ACTGCAGCTGGAACGGTG 60.281 61.111 17.12 2.52 36.83 4.94
3466 3634 2.031163 GACTGCAGCTGGAACGGT 59.969 61.111 17.12 9.99 36.83 4.83
3467 3635 1.888436 TAGGACTGCAGCTGGAACGG 61.888 60.000 17.12 6.47 38.10 4.44
3468 3636 0.037326 TTAGGACTGCAGCTGGAACG 60.037 55.000 17.12 4.17 0.00 3.95
3469 3637 2.409948 ATTAGGACTGCAGCTGGAAC 57.590 50.000 17.12 9.58 0.00 3.62
3470 3638 2.573462 AGAATTAGGACTGCAGCTGGAA 59.427 45.455 17.12 3.78 0.00 3.53
3471 3639 2.169352 GAGAATTAGGACTGCAGCTGGA 59.831 50.000 17.12 12.70 0.00 3.86
3472 3640 2.170187 AGAGAATTAGGACTGCAGCTGG 59.830 50.000 17.12 1.57 0.00 4.85
3473 3641 3.540314 AGAGAATTAGGACTGCAGCTG 57.460 47.619 15.27 10.11 0.00 4.24
3474 3642 3.069443 GCTAGAGAATTAGGACTGCAGCT 59.931 47.826 15.27 6.34 0.00 4.24
3475 3643 3.069443 AGCTAGAGAATTAGGACTGCAGC 59.931 47.826 15.27 6.61 0.00 5.25
3476 3644 4.935352 AGCTAGAGAATTAGGACTGCAG 57.065 45.455 13.48 13.48 0.00 4.41
3477 3645 4.711846 TCAAGCTAGAGAATTAGGACTGCA 59.288 41.667 0.00 0.00 0.00 4.41
3478 3646 5.047188 GTCAAGCTAGAGAATTAGGACTGC 58.953 45.833 0.00 0.00 0.00 4.40
3479 3647 6.096141 TCTGTCAAGCTAGAGAATTAGGACTG 59.904 42.308 0.00 0.00 0.00 3.51
3480 3648 6.191315 TCTGTCAAGCTAGAGAATTAGGACT 58.809 40.000 0.00 0.00 0.00 3.85
3481 3649 6.096282 ACTCTGTCAAGCTAGAGAATTAGGAC 59.904 42.308 16.45 0.00 42.34 3.85
3482 3650 6.096141 CACTCTGTCAAGCTAGAGAATTAGGA 59.904 42.308 16.45 0.00 42.34 2.94
3483 3651 6.096141 TCACTCTGTCAAGCTAGAGAATTAGG 59.904 42.308 16.45 1.64 42.34 2.69
3484 3652 7.094508 TCACTCTGTCAAGCTAGAGAATTAG 57.905 40.000 16.45 3.20 42.34 1.73
3485 3653 7.468141 TTCACTCTGTCAAGCTAGAGAATTA 57.532 36.000 16.45 0.00 42.34 1.40
3486 3654 5.991933 TCACTCTGTCAAGCTAGAGAATT 57.008 39.130 16.45 0.00 42.34 2.17
3487 3655 5.991933 TTCACTCTGTCAAGCTAGAGAAT 57.008 39.130 16.45 0.00 42.34 2.40
3488 3656 5.791336 TTTCACTCTGTCAAGCTAGAGAA 57.209 39.130 16.45 3.40 42.34 2.87
3489 3657 5.509840 GGTTTTCACTCTGTCAAGCTAGAGA 60.510 44.000 16.45 0.99 42.34 3.10
3490 3658 4.688413 GGTTTTCACTCTGTCAAGCTAGAG 59.312 45.833 9.29 9.29 44.63 2.43
3505 3673 7.364970 ACATCTTAATTTGGTACGGTTTTCAC 58.635 34.615 0.00 0.00 0.00 3.18
3511 3679 4.824289 ACGACATCTTAATTTGGTACGGT 58.176 39.130 0.00 0.00 0.00 4.83
3513 3681 7.063780 AGGTTAACGACATCTTAATTTGGTACG 59.936 37.037 0.00 0.00 0.00 3.67
3514 3682 8.260270 AGGTTAACGACATCTTAATTTGGTAC 57.740 34.615 0.00 0.00 0.00 3.34
3530 3698 6.610075 AAGTCCATTAGGTAAGGTTAACGA 57.390 37.500 0.00 0.00 35.89 3.85
3631 3799 3.192001 GGGGTAAAAACCGGAATTCACTC 59.808 47.826 9.46 0.00 0.00 3.51
3632 3800 3.159472 GGGGTAAAAACCGGAATTCACT 58.841 45.455 9.46 0.00 0.00 3.41
3633 3801 2.231964 GGGGGTAAAAACCGGAATTCAC 59.768 50.000 9.46 0.00 0.00 3.18
3634 3802 2.110365 AGGGGGTAAAAACCGGAATTCA 59.890 45.455 9.46 0.00 0.00 2.57
3635 3803 2.811410 AGGGGGTAAAAACCGGAATTC 58.189 47.619 9.46 0.00 0.00 2.17
3636 3804 4.613265 ATAGGGGGTAAAAACCGGAATT 57.387 40.909 9.46 0.00 0.00 2.17
3637 3805 4.613265 AATAGGGGGTAAAAACCGGAAT 57.387 40.909 9.46 0.00 0.00 3.01
3638 3806 4.401048 AAATAGGGGGTAAAAACCGGAA 57.599 40.909 9.46 0.00 0.00 4.30
3639 3807 4.087907 CAAAATAGGGGGTAAAAACCGGA 58.912 43.478 9.46 0.00 0.00 5.14
3640 3808 4.082081 GTCAAAATAGGGGGTAAAAACCGG 60.082 45.833 0.00 0.00 0.00 5.28
3641 3809 4.768448 AGTCAAAATAGGGGGTAAAAACCG 59.232 41.667 0.00 0.00 0.00 4.44
3642 3810 6.675413 AAGTCAAAATAGGGGGTAAAAACC 57.325 37.500 0.00 0.00 0.00 3.27
3643 3811 8.967664 AAAAAGTCAAAATAGGGGGTAAAAAC 57.032 30.769 0.00 0.00 0.00 2.43
3665 3833 8.308207 GCTAAATGGGGTAATTAGTGTCAAAAA 58.692 33.333 0.00 0.00 0.00 1.94
3666 3834 7.362229 CGCTAAATGGGGTAATTAGTGTCAAAA 60.362 37.037 0.00 0.00 34.21 2.44
3667 3835 6.094325 CGCTAAATGGGGTAATTAGTGTCAAA 59.906 38.462 0.00 0.00 34.21 2.69
3668 3836 5.587043 CGCTAAATGGGGTAATTAGTGTCAA 59.413 40.000 0.00 0.00 34.21 3.18
3669 3837 5.120399 CGCTAAATGGGGTAATTAGTGTCA 58.880 41.667 0.00 0.00 34.21 3.58
3670 3838 4.514066 CCGCTAAATGGGGTAATTAGTGTC 59.486 45.833 0.00 0.00 43.08 3.67
3671 3839 4.457466 CCGCTAAATGGGGTAATTAGTGT 58.543 43.478 0.00 0.00 43.08 3.55
3672 3840 3.818773 CCCGCTAAATGGGGTAATTAGTG 59.181 47.826 0.00 0.00 46.22 2.74
3673 3841 4.094830 CCCGCTAAATGGGGTAATTAGT 57.905 45.455 0.00 0.00 46.22 2.24
3694 3862 5.592104 AATGGGGTAAAACGGATGAAATC 57.408 39.130 0.00 0.00 44.55 2.17
3695 3863 6.406512 GCTAAATGGGGTAAAACGGATGAAAT 60.407 38.462 0.00 0.00 0.00 2.17
3696 3864 5.105675 GCTAAATGGGGTAAAACGGATGAAA 60.106 40.000 0.00 0.00 0.00 2.69
3697 3865 4.399934 GCTAAATGGGGTAAAACGGATGAA 59.600 41.667 0.00 0.00 0.00 2.57
3698 3866 3.949113 GCTAAATGGGGTAAAACGGATGA 59.051 43.478 0.00 0.00 0.00 2.92
3699 3867 3.697045 TGCTAAATGGGGTAAAACGGATG 59.303 43.478 0.00 0.00 0.00 3.51
3700 3868 3.697542 GTGCTAAATGGGGTAAAACGGAT 59.302 43.478 0.00 0.00 0.00 4.18
3701 3869 3.083293 GTGCTAAATGGGGTAAAACGGA 58.917 45.455 0.00 0.00 0.00 4.69
3702 3870 2.820787 TGTGCTAAATGGGGTAAAACGG 59.179 45.455 0.00 0.00 0.00 4.44
3703 3871 4.022676 ACTTGTGCTAAATGGGGTAAAACG 60.023 41.667 0.00 0.00 0.00 3.60
3704 3872 5.221362 ACACTTGTGCTAAATGGGGTAAAAC 60.221 40.000 0.10 0.00 0.00 2.43
3705 3873 4.896482 ACACTTGTGCTAAATGGGGTAAAA 59.104 37.500 0.10 0.00 0.00 1.52
3706 3874 4.475345 ACACTTGTGCTAAATGGGGTAAA 58.525 39.130 0.10 0.00 0.00 2.01
3707 3875 4.107127 ACACTTGTGCTAAATGGGGTAA 57.893 40.909 0.10 0.00 0.00 2.85
3708 3876 3.799432 ACACTTGTGCTAAATGGGGTA 57.201 42.857 0.10 0.00 0.00 3.69
3709 3877 2.627699 CAACACTTGTGCTAAATGGGGT 59.372 45.455 0.10 0.00 0.00 4.95
3710 3878 2.610232 GCAACACTTGTGCTAAATGGGG 60.610 50.000 0.10 0.00 0.00 4.96
3711 3879 2.610232 GGCAACACTTGTGCTAAATGGG 60.610 50.000 0.10 0.00 0.00 4.00
3712 3880 2.035704 TGGCAACACTTGTGCTAAATGG 59.964 45.455 0.10 0.00 46.17 3.16
3713 3881 3.367992 TGGCAACACTTGTGCTAAATG 57.632 42.857 0.10 0.00 46.17 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.