AutoCloner

Multiple sequence alignment - TraesCS5A01G555200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G555200	chr5A	100.000	3326	0	0	1	3326	706679512	706676187	0.000000e+00	6143.0
1	TraesCS5A01G555200	chr5A	89.697	165	14	2	15	179	670427438	670427277	1.210000e-49	207.0
2	TraesCS5A01G555200	chr5A	86.861	137	15	3	1351	1485	706705954	706705819	2.070000e-32	150.0
3	TraesCS5A01G555200	chr4B	93.137	3395	147	35	1	3324	639451134	639454513	0.000000e+00	4900.0
4	TraesCS5A01G555200	chr4B	91.527	1735	82	26	1	1713	667342699	667344390	0.000000e+00	2329.0
5	TraesCS5A01G555200	chr4B	88.466	789	56	15	1706	2475	667345371	667346143	0.000000e+00	920.0
6	TraesCS5A01G555200	chr4B	79.918	1225	157	40	984	2156	626068871	626067684	0.000000e+00	817.0
7	TraesCS5A01G555200	chr4B	80.195	1131	136	47	1077	2165	489294396	489293312	0.000000e+00	767.0
8	TraesCS5A01G555200	chr4B	77.060	619	98	31	1556	2142	667263798	667264404	1.930000e-82	316.0
9	TraesCS5A01G555200	chr4B	86.447	273	16	9	15	286	626071399	626071147	2.530000e-71	279.0
10	TraesCS5A01G555200	chr4B	88.824	170	17	1	2477	2646	28724144	28724311	1.210000e-49	207.0
11	TraesCS5A01G555200	chr4B	88.550	131	12	3	1351	1479	639294594	639294723	4.440000e-34	156.0
12	TraesCS5A01G555200	chr4B	80.676	207	33	7	1298	1502	639268968	639269169	1.600000e-33	154.0
13	TraesCS5A01G555200	chr4B	90.265	113	11	0	2031	2143	639323687	639323799	7.430000e-32	148.0
14	TraesCS5A01G555200	chr4B	92.857	70	4	1	2253	2321	489293303	489293234	2.110000e-17	100.0
15	TraesCS5A01G555200	chr4B	95.556	45	2	0	1155	1199	667263180	667263224	4.600000e-09	73.1
16	TraesCS5A01G555200	chrUn	95.674	1202	43	3	1	1196	30127642	30126444	0.000000e+00	1923.0
17	TraesCS5A01G555200	chrUn	95.142	741	31	2	1255	1990	30126437	30125697	0.000000e+00	1164.0
18	TraesCS5A01G555200	chrUn	93.908	476	15	6	2517	2992	30125676	30125215	0.000000e+00	706.0
19	TraesCS5A01G555200	chrUn	78.831	633	84	29	1572	2167	30131077	30130458	6.730000e-102	381.0
20	TraesCS5A01G555200	chrUn	85.892	241	16	10	3066	3292	30125224	30124988	1.190000e-59	241.0
21	TraesCS5A01G555200	chr4D	80.785	1223	165	26	984	2173	488666096	488664911	0.000000e+00	893.0
22	TraesCS5A01G555200	chr4D	79.983	1199	141	49	1009	2160	397158318	397157172	0.000000e+00	793.0
23	TraesCS5A01G555200	chr4D	83.374	409	41	15	15	423	488667273	488666892	1.470000e-93	353.0
24	TraesCS5A01G555200	chr4A	80.035	1142	135	42	1073	2165	54405840	54404743	0.000000e+00	760.0
25	TraesCS5A01G555200	chr4A	90.667	75	6	1	2253	2326	54404734	54404660	7.590000e-17	99.0
26	TraesCS5A01G555200	chr1D	80.978	368	43	10	1073	1422	394263729	394263371	1.970000e-67	267.0
27	TraesCS5A01G555200	chr1D	90.184	163	13	2	2477	2639	439535455	439535296	3.360000e-50	209.0
28	TraesCS5A01G555200	chr6A	90.854	164	13	1	2477	2640	442395556	442395717	5.590000e-53	219.0
29	TraesCS5A01G555200	chr5D	89.820	167	15	1	2477	2643	461072603	461072767	2.600000e-51	213.0
30	TraesCS5A01G555200	chr1A	90.184	163	14	1	2477	2639	4312584	4312424	9.350000e-51	211.0
31	TraesCS5A01G555200	chr2D	89.286	168	16	1	2472	2639	624365938	624365773	3.360000e-50	209.0
32	TraesCS5A01G555200	chr7B	87.931	174	18	2	2463	2636	443741385	443741555	5.630000e-48	202.0
33	TraesCS5A01G555200	chr3A	88.304	171	17	2	2470	2640	600921021	600920854	5.630000e-48	202.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G555200	chr5A	706676187	706679512	3325	True	6143.0	6143	100.0000	1	3326	1	chr5A.!!$R2	3325
1	TraesCS5A01G555200	chr4B	639451134	639454513	3379	False	4900.0	4900	93.1370	1	3324	1	chr4B.!!$F5	3323
2	TraesCS5A01G555200	chr4B	667342699	667346143	3444	False	1624.5	2329	89.9965	1	2475	2	chr4B.!!$F7	2474
3	TraesCS5A01G555200	chr4B	626067684	626071399	3715	True	548.0	817	83.1825	15	2156	2	chr4B.!!$R2	2141
4	TraesCS5A01G555200	chr4B	489293234	489294396	1162	True	433.5	767	86.5260	1077	2321	2	chr4B.!!$R1	1244
5	TraesCS5A01G555200	chrUn	30124988	30131077	6089	True	883.0	1923	89.8894	1	3292	5	chrUn.!!$R1	3291
6	TraesCS5A01G555200	chr4D	397157172	397158318	1146	True	793.0	793	79.9830	1009	2160	1	chr4D.!!$R1	1151
7	TraesCS5A01G555200	chr4D	488664911	488667273	2362	True	623.0	893	82.0795	15	2173	2	chr4D.!!$R2	2158
8	TraesCS5A01G555200	chr4A	54404660	54405840	1180	True	429.5	760	85.3510	1073	2326	2	chr4A.!!$R1	1253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
830	6038	0.385390	AAAACCTTCTTGTGCAGGCG	59.615	50.000	0.00	0.00	32.79	5.52	F
1682	7024	2.069273	CGTCAGAGTCCATGGTGTTTC	58.931	52.381	12.58	5.61	0.00	2.78	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1807	8143	0.322906	CCCCTTTTCTCCCTCTGCAC	60.323	60.0	0.0	0.0	0.0	4.57	R
3160	9568	0.326904	ATCATGCTCCAGACCCTCCA	60.327	55.0	0.0	0.0	0.0	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
141	3584	5.888982	ACCTCGTTGATGGGATTACTAAT	57.111	39.130	0.00	0.00	0.00	1.73
189	3632	1.273606	CTCTTCTCGTGCCCTCTTCAA	59.726	52.381	0.00	0.00	0.00	2.69
312	5127	6.595682	TCTAAAGCTTTTAGGCTCAGCATAT	58.404	36.000	18.47	4.27	42.24	1.78
318	5133	7.911651	AGCTTTTAGGCTCAGCATATAGAATA	58.088	34.615	13.85	0.00	38.24	1.75
477	5368	9.547753	CAGATATACTTACAAATTACAGGCACT	57.452	33.333	0.00	0.00	43.88	4.40
661	5860	0.460987	GCTAAGCATGACAGGACGCT	60.461	55.000	0.00	0.00	35.90	5.07
759	5963	6.039616	CAGAAACTCTACTACTTCTCCATGC	58.960	44.000	0.00	0.00	0.00	4.06
798	6003	3.639561	TCTTGGGTCTGCGCTTGTATATA	59.360	43.478	9.73	0.00	0.00	0.86
830	6038	0.385390	AAAACCTTCTTGTGCAGGCG	59.615	50.000	0.00	0.00	32.79	5.52
870	6083	3.188786	GGCTTGCGCAGACGGTAG	61.189	66.667	11.31	4.97	40.57	3.18
902	6140	8.415192	AGCACATGCATTTGTTTCAAATATAG	57.585	30.769	14.07	0.00	45.16	1.31
1035	6292	6.668283	AGCAAGAGGAGGAACTAGTTTACATA	59.332	38.462	10.02	0.00	41.55	2.29
1207	6467	3.521796	GCTTTGGGGCCTCATCGC	61.522	66.667	5.88	8.80	0.00	4.58
1303	6578	2.897641	CTTCCTCTCCTTCGGCAGCG	62.898	65.000	0.00	0.00	0.00	5.18
1319	6594	2.970639	CGCCCTCAACTTCTCCGA	59.029	61.111	0.00	0.00	0.00	4.55
1682	7024	2.069273	CGTCAGAGTCCATGGTGTTTC	58.931	52.381	12.58	5.61	0.00	2.78
1839	8175	3.590466	AAGGGGTGCTGGTGATGGC	62.590	63.158	0.00	0.00	0.00	4.40
1878	8214	2.441001	ACCAGGGCCTCTCAATCATAAG	59.559	50.000	0.95	0.00	0.00	1.73
1958	8307	0.763604	GGCCCCTCTACCTTCCTACC	60.764	65.000	0.00	0.00	0.00	3.18
2009	8360	8.018677	AGAGAATATATAAACCGTGATTTGCG	57.981	34.615	0.00	0.00	0.00	4.85
2055	8408	6.849502	TGATCAGAAGATTGACATTTTCAGC	58.150	36.000	0.00	0.00	34.94	4.26
2086	8443	0.034337	CGAAGAGGGGTTTTCGTCCA	59.966	55.000	0.00	0.00	40.79	4.02
2222	8582	0.535102	AACAAGAACAGTGGCTCCGG	60.535	55.000	0.00	0.00	0.00	5.14
2423	8791	3.178618	CGAATGTATTCTGTCGAGAAGCG	59.821	47.826	3.40	0.00	41.62	4.68
2424	8792	1.909376	TGTATTCTGTCGAGAAGCGC	58.091	50.000	0.00	0.00	41.62	5.92
2426	8794	1.849219	GTATTCTGTCGAGAAGCGCTG	59.151	52.381	12.58	0.00	41.62	5.18
2431	8799	1.728971	CTGTCGAGAAGCGCTGATTTT	59.271	47.619	12.58	0.00	40.61	1.82
2475	8850	7.324178	AGAGCCGTATATGAATGTTCTAATCC	58.676	38.462	0.00	0.00	0.00	3.01
2529	8904	2.866762	GAGATTCCAATGCGGACTACAC	59.133	50.000	0.00	0.00	46.36	2.90
2690	9065	1.511850	TTTGTCTCGTGCATGTCCTG	58.488	50.000	5.68	0.00	0.00	3.86
2753	9128	2.439507	ACCTGAACTGCAAAAGAGAGGA	59.560	45.455	0.00	0.00	0.00	3.71
2840	9215	6.483307	TCCGAAGTGCTCTTATTTATGGATTG	59.517	38.462	0.04	0.00	33.64	2.67
2873	9252	6.038050	CAGATTCATAGGAGAAACTTGCTTCC	59.962	42.308	0.00	0.00	29.47	3.46
2951	9330	2.033801	GCAGAAGCTCTGTGCAAGAAAA	59.966	45.455	11.36	0.00	45.94	2.29
2987	9366	6.313411	CAGAAGCAGAATAGTTCAAGGAAGAG	59.687	42.308	0.00	0.00	0.00	2.85
2990	9369	6.405538	AGCAGAATAGTTCAAGGAAGAGAAG	58.594	40.000	0.00	0.00	0.00	2.85
3000	9379	0.906066	GGAAGAGAAGGGGTCAGGAC	59.094	60.000	0.00	0.00	0.00	3.85
3014	9393	4.221041	GGGTCAGGACTTATATACCTCAGC	59.779	50.000	0.00	0.00	31.06	4.26
3015	9394	5.081032	GGTCAGGACTTATATACCTCAGCT	58.919	45.833	0.00	0.00	31.06	4.24
3016	9395	5.047660	GGTCAGGACTTATATACCTCAGCTG	60.048	48.000	7.63	7.63	31.06	4.24
3017	9396	5.047660	GTCAGGACTTATATACCTCAGCTGG	60.048	48.000	15.13	0.12	31.06	4.85
3018	9397	4.835615	CAGGACTTATATACCTCAGCTGGT	59.164	45.833	15.13	7.50	43.66	4.00
3019	9398	5.305644	CAGGACTTATATACCTCAGCTGGTT	59.694	44.000	15.13	0.57	41.22	3.67
3020	9399	6.493802	CAGGACTTATATACCTCAGCTGGTTA	59.506	42.308	15.13	3.06	41.22	2.85
3021	9400	6.722129	AGGACTTATATACCTCAGCTGGTTAG	59.278	42.308	15.13	3.67	41.22	2.34
3023	9402	5.780793	ACTTATATACCTCAGCTGGTTAGGG	59.219	44.000	20.73	14.20	41.22	3.53
3025	9404	1.327690	TACCTCAGCTGGTTAGGGCG	61.328	60.000	20.73	0.71	41.22	6.13
3026	9405	2.187946	CTCAGCTGGTTAGGGCGG	59.812	66.667	15.13	0.00	0.00	6.13
3027	9406	2.606519	TCAGCTGGTTAGGGCGGT	60.607	61.111	15.13	0.00	0.00	5.68
3028	9407	2.436646	CAGCTGGTTAGGGCGGTG	60.437	66.667	5.57	0.00	0.00	4.94
3029	9408	3.717294	AGCTGGTTAGGGCGGTGG	61.717	66.667	0.00	0.00	0.00	4.61
3031	9410	2.046314	CTGGTTAGGGCGGTGGTG	60.046	66.667	0.00	0.00	0.00	4.17
3032	9411	2.527123	TGGTTAGGGCGGTGGTGA	60.527	61.111	0.00	0.00	0.00	4.02
3033	9412	2.046604	GGTTAGGGCGGTGGTGAC	60.047	66.667	0.00	0.00	0.00	3.67
3034	9413	2.046604	GTTAGGGCGGTGGTGACC	60.047	66.667	0.00	0.00	39.14	4.02
3043	9422	4.626081	GTGGTGACCGGCTGCAGT	62.626	66.667	16.64	0.00	0.00	4.40
3044	9423	4.314440	TGGTGACCGGCTGCAGTC	62.314	66.667	16.64	12.92	0.00	3.51
3046	9425	4.664677	GTGACCGGCTGCAGTCGT	62.665	66.667	35.85	24.80	42.34	4.34
3047	9426	3.923864	TGACCGGCTGCAGTCGTT	61.924	61.111	35.85	26.11	42.34	3.85
3048	9427	3.414700	GACCGGCTGCAGTCGTTG	61.415	66.667	35.85	25.00	42.34	4.10
3059	9444	0.949105	CAGTCGTTGCTACCGCCTTT	60.949	55.000	0.00	0.00	34.43	3.11
3064	9449	0.679960	GTTGCTACCGCCTTTCCCAT	60.680	55.000	0.00	0.00	34.43	4.00
3084	9469	2.200081	TGGAAGAAAGGAGAGGATGGG	58.800	52.381	0.00	0.00	0.00	4.00
3197	9605	1.539388	GATGCCATTGTCACCGAAACA	59.461	47.619	0.00	0.00	0.00	2.83
3208	9616	2.168521	TCACCGAAACATCCTCATCTCC	59.831	50.000	0.00	0.00	0.00	3.71
3238	9646	1.748879	CCCAACTACACGGCCCATG	60.749	63.158	0.00	0.00	0.00	3.66
3239	9647	2.406616	CCAACTACACGGCCCATGC	61.407	63.158	0.00	0.00	0.00	4.06
3240	9648	1.673993	CAACTACACGGCCCATGCA	60.674	57.895	0.00	0.00	40.13	3.96
3241	9649	1.031571	CAACTACACGGCCCATGCAT	61.032	55.000	0.00	0.00	40.13	3.96
3300	9708	1.079543	CAGGTCGACCTTGGCTCAG	60.080	63.158	34.54	17.45	46.09	3.35
3304	9712	1.339151	GGTCGACCTTGGCTCAGAAAT	60.339	52.381	27.64	0.00	0.00	2.17
3314	9722	5.243730	CCTTGGCTCAGAAATCTTTAAACCA	59.756	40.000	0.00	0.00	0.00	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
141	3584	7.443575	ACAAATGCCTTGTATATTTGTTTTGCA	59.556	29.630	8.32	0.00	46.87	4.08
189	3632	4.137543	CAACCAGCTGGAAAGTAGAAACT	58.862	43.478	39.19	9.18	38.94	2.66
312	5127	3.069443	TGTGATCATGGCGCTGTATTCTA	59.931	43.478	7.64	0.00	0.00	2.10
318	5133	2.400911	CATGTGATCATGGCGCTGT	58.599	52.632	7.64	0.00	45.30	4.40
338	5153	5.598005	TCATCTTGTCAATTGTTTTGGAGGT	59.402	36.000	5.13	0.00	0.00	3.85
477	5368	0.306533	GCAAAAGGCTCGTGACGAAA	59.693	50.000	9.64	0.00	40.25	3.46
661	5860	1.949525	GCTGCTCTTGTTTCTTGACCA	59.050	47.619	0.00	0.00	0.00	4.02
759	5963	3.056607	CCAAGAACACCAAGCTTATTGGG	60.057	47.826	11.12	3.54	43.71	4.12
830	6038	2.243810	TGGTTTGGTTGCTCCATAACC	58.756	47.619	22.14	22.14	46.60	2.85
870	6083	8.410030	TGAAACAAATGCATGTGCTTATATTC	57.590	30.769	17.13	11.52	42.66	1.75
1035	6292	0.919710	GACCCCCTTCTTGCTGGTAT	59.080	55.000	0.00	0.00	0.00	2.73
1199	6459	4.776322	TGGGCAACGGCGATGAGG	62.776	66.667	21.73	2.64	42.47	3.86
1207	6467	2.744709	CGGTAGGTTGGGCAACGG	60.745	66.667	0.00	0.00	42.02	4.44
1262	6522	3.356639	GACGATGGCGGCTGAGACA	62.357	63.158	11.43	0.00	43.91	3.41
1303	6578	0.391793	CCTTCGGAGAAGTTGAGGGC	60.392	60.000	8.70	0.00	45.90	5.19
1344	6625	3.203086	TTGCATCGTCCCTTGGGCA	62.203	57.895	0.00	0.00	0.00	5.36
1748	8084	2.105128	GATGTCCGGGCTCGAGTG	59.895	66.667	8.08	4.41	39.00	3.51
1807	8143	0.322906	CCCCTTTTCTCCCTCTGCAC	60.323	60.000	0.00	0.00	0.00	4.57
1878	8214	3.120095	GGTAAAAGGTACGATGTTGGTGC	60.120	47.826	0.00	0.00	0.00	5.01
1958	8307	5.629020	ACAAGTTATAACGCATTTGCACAAG	59.371	36.000	9.91	0.00	42.21	3.16
2009	8360	3.801698	TGCATGCATTAGAGTTCTCCTC	58.198	45.455	18.46	0.00	40.80	3.71
2055	8408	2.005451	CCCTCTTCGATCTGCACAAAG	58.995	52.381	0.00	0.00	0.00	2.77
2086	8443	2.565841	GTTCTTCACCAGCTCAACTGT	58.434	47.619	0.00	0.00	45.68	3.55
2222	8582	4.167597	TGGTTTTCCCAAGACGGC	57.832	55.556	0.00	0.00	41.50	5.68
2241	8601	8.411683	CCGTGACCAACTTAGATACTACTAAAT	58.588	37.037	0.00	0.00	32.95	1.40
2255	8615	3.713826	AATGGATACCGTGACCAACTT	57.286	42.857	0.00	0.00	37.24	2.66
2431	8799	6.594159	CGGCTCTCCATTTTCTTCTTAGTAAA	59.406	38.462	0.00	0.00	0.00	2.01
2433	8801	5.187186	ACGGCTCTCCATTTTCTTCTTAGTA	59.813	40.000	0.00	0.00	0.00	1.82
2437	8812	3.425162	ACGGCTCTCCATTTTCTTCTT	57.575	42.857	0.00	0.00	0.00	2.52
2475	8850	6.424207	GCTTATATTTAGAAACGGAGGGAGTG	59.576	42.308	0.00	0.00	0.00	3.51
2529	8904	5.551760	AGATTCACTTATTTTGCTCCGTG	57.448	39.130	0.00	0.00	0.00	4.94
2624	8999	6.891908	TCCTTTTCTTCTATTCCCTCCATTTG	59.108	38.462	0.00	0.00	0.00	2.32
2690	9065	1.569653	AAGGCCTGTACCTGTACTCC	58.430	55.000	5.69	7.24	39.93	3.85
2753	9128	9.820725	TTTCAACTTCATTGATGAATTTCTGTT	57.179	25.926	6.85	5.07	46.80	3.16
2840	9215	5.991933	TCTCCTATGAATCTGTAGGCATC	57.008	43.478	7.21	0.00	37.87	3.91
2873	9252	5.722021	AACTTGGGTACAAATTAGCCTTG	57.278	39.130	0.00	0.00	35.89	3.61
2978	9357	1.280421	CCTGACCCCTTCTCTTCCTTG	59.720	57.143	0.00	0.00	0.00	3.61
2987	9366	5.404395	AGGTATATAAGTCCTGACCCCTTC	58.596	45.833	0.00	0.00	0.00	3.46
2990	9369	4.748701	TGAGGTATATAAGTCCTGACCCC	58.251	47.826	0.00	0.00	0.00	4.95
3000	9379	5.337652	GCCCTAACCAGCTGAGGTATATAAG	60.338	48.000	17.39	0.76	42.25	1.73
3014	9393	2.046314	CACCACCGCCCTAACCAG	60.046	66.667	0.00	0.00	0.00	4.00
3015	9394	2.527123	TCACCACCGCCCTAACCA	60.527	61.111	0.00	0.00	0.00	3.67
3016	9395	2.046604	GTCACCACCGCCCTAACC	60.047	66.667	0.00	0.00	0.00	2.85
3017	9396	2.046604	GGTCACCACCGCCCTAAC	60.047	66.667	0.00	0.00	31.06	2.34
3026	9405	4.626081	ACTGCAGCCGGTCACCAC	62.626	66.667	15.27	0.00	0.00	4.16
3027	9406	4.314440	GACTGCAGCCGGTCACCA	62.314	66.667	15.27	0.00	44.97	4.17
3029	9408	4.664677	ACGACTGCAGCCGGTCAC	62.665	66.667	26.23	3.02	45.74	3.67
3031	9410	3.414700	CAACGACTGCAGCCGGTC	61.415	66.667	26.23	10.44	42.71	4.79
3048	9427	1.823899	CCATGGGAAAGGCGGTAGC	60.824	63.158	2.85	0.00	44.18	3.58
3059	9444	2.200081	CCTCTCCTTTCTTCCATGGGA	58.800	52.381	13.02	0.69	0.00	4.37
3064	9449	2.200081	CCCATCCTCTCCTTTCTTCCA	58.800	52.381	0.00	0.00	0.00	3.53
3084	9469	3.053831	TCATTTCACTTTCCTCGTCCC	57.946	47.619	0.00	0.00	0.00	4.46
3156	9564	3.775654	CTCCAGACCCTCCACGGC	61.776	72.222	0.00	0.00	0.00	5.68
3160	9568	0.326904	ATCATGCTCCAGACCCTCCA	60.327	55.000	0.00	0.00	0.00	3.86
3197	9605	3.307506	CTGAGGAAGTGGAGATGAGGAT	58.692	50.000	0.00	0.00	0.00	3.24
3208	9616	0.984230	TAGTTGGGCCTGAGGAAGTG	59.016	55.000	0.65	0.00	0.00	3.16
3238	9646	2.549754	CGGAATATGGGAGTCAACATGC	59.450	50.000	9.17	0.97	0.00	4.06
3239	9647	3.808728	ACGGAATATGGGAGTCAACATG	58.191	45.455	9.17	0.00	0.00	3.21
3240	9648	3.454447	TGACGGAATATGGGAGTCAACAT	59.546	43.478	5.12	5.12	38.66	2.71
3241	9649	2.835156	TGACGGAATATGGGAGTCAACA	59.165	45.455	0.00	0.00	38.66	3.33

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.