Multiple sequence alignment - TraesCS5A01G554900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G554900 chr5A 100.000 3080 0 0 1 3080 706562984 706566063 0.000000e+00 5688.0
1 TraesCS5A01G554900 chr5A 80.696 1321 205 37 1000 2301 688666230 688664941 0.000000e+00 981.0
2 TraesCS5A01G554900 chr5A 84.891 503 55 12 2596 3080 688664375 688663876 3.570000e-134 488.0
3 TraesCS5A01G554900 chrUn 92.608 1461 73 8 857 2286 30047326 30048782 0.000000e+00 2067.0
4 TraesCS5A01G554900 chrUn 96.203 474 11 2 2283 2756 30053671 30054137 0.000000e+00 769.0
5 TraesCS5A01G554900 chrUn 97.778 405 8 1 2676 3080 30082694 30083097 0.000000e+00 697.0
6 TraesCS5A01G554900 chrUn 97.284 405 11 0 2283 2687 30075363 30075767 0.000000e+00 688.0
7 TraesCS5A01G554900 chrUn 82.620 397 31 15 150 524 30046338 30046718 1.780000e-82 316.0
8 TraesCS5A01G554900 chrUn 86.364 286 14 9 528 810 30046806 30047069 3.890000e-74 289.0
9 TraesCS5A01G554900 chr4B 83.770 1374 180 29 970 2330 650273067 650271724 0.000000e+00 1262.0
10 TraesCS5A01G554900 chr4B 84.047 1191 153 27 999 2165 667564462 667563285 0.000000e+00 1112.0
11 TraesCS5A01G554900 chr4B 80.583 1097 177 27 1017 2099 650601664 650600590 0.000000e+00 813.0
12 TraesCS5A01G554900 chr4B 88.798 491 52 3 2590 3080 650271368 650270881 1.580000e-167 599.0
13 TraesCS5A01G554900 chr4B 85.882 85 12 0 2990 3074 673111393 673111477 1.180000e-14 91.6
14 TraesCS5A01G554900 chr4B 97.778 45 0 1 481 524 667585292 667585248 3.290000e-10 76.8
15 TraesCS5A01G554900 chr4D 84.044 1172 167 15 970 2133 503969987 503968828 0.000000e+00 1110.0
16 TraesCS5A01G554900 chr4D 83.694 509 56 10 2596 3080 503966290 503965785 3.620000e-124 455.0
17 TraesCS5A01G554900 chr4A 80.394 1321 224 25 992 2298 729114047 729115346 0.000000e+00 972.0
18 TraesCS5A01G554900 chr4A 81.256 1099 176 24 1015 2100 728728971 728727890 0.000000e+00 861.0
19 TraesCS5A01G554900 chr5B 83.003 1059 148 21 1017 2065 542986704 542985668 0.000000e+00 929.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G554900 chr5A 706562984 706566063 3079 False 5688.000000 5688 100.000000 1 3080 1 chr5A.!!$F1 3079
1 TraesCS5A01G554900 chr5A 688663876 688666230 2354 True 734.500000 981 82.793500 1000 3080 2 chr5A.!!$R1 2080
2 TraesCS5A01G554900 chrUn 30046338 30048782 2444 False 890.666667 2067 87.197333 150 2286 3 chrUn.!!$F4 2136
3 TraesCS5A01G554900 chr4B 667563285 667564462 1177 True 1112.000000 1112 84.047000 999 2165 1 chr4B.!!$R2 1166
4 TraesCS5A01G554900 chr4B 650270881 650273067 2186 True 930.500000 1262 86.284000 970 3080 2 chr4B.!!$R4 2110
5 TraesCS5A01G554900 chr4B 650600590 650601664 1074 True 813.000000 813 80.583000 1017 2099 1 chr4B.!!$R1 1082
6 TraesCS5A01G554900 chr4D 503965785 503969987 4202 True 782.500000 1110 83.869000 970 3080 2 chr4D.!!$R1 2110
7 TraesCS5A01G554900 chr4A 729114047 729115346 1299 False 972.000000 972 80.394000 992 2298 1 chr4A.!!$F1 1306
8 TraesCS5A01G554900 chr4A 728727890 728728971 1081 True 861.000000 861 81.256000 1015 2100 1 chr4A.!!$R1 1085
9 TraesCS5A01G554900 chr5B 542985668 542986704 1036 True 929.000000 929 83.003000 1017 2065 1 chr5B.!!$R1 1048

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 380 0.028505 TAAGTCGTCCATCGCTACGC 59.971 55.0 0.00 0.0 38.94 4.42 F
387 393 0.249531 GCTACGCTAGGGCTTCTTCC 60.250 60.0 6.73 0.0 36.09 3.46 F
799 914 0.326264 CCTAGCAGCTCAAACCCTGT 59.674 55.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1788 2148 0.032952 CCAACAAGTGCTGCAATGCT 59.967 50.000 2.77 0.0 0.0 3.79 R
1815 2175 1.341531 CTGTCCAGTCCATACCGATCC 59.658 57.143 0.00 0.0 0.0 3.36 R
2434 4646 0.115745 ACTTGGAAGGGAGTACGGGA 59.884 55.000 0.00 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.214721 CCTACAAAATCCCAGAAAGATCTTAC 57.785 38.462 8.75 0.00 32.03 2.34
26 27 7.829211 CCTACAAAATCCCAGAAAGATCTTACA 59.171 37.037 8.75 0.00 32.03 2.41
27 28 7.454260 ACAAAATCCCAGAAAGATCTTACAC 57.546 36.000 8.75 3.91 32.03 2.90
28 29 6.149474 ACAAAATCCCAGAAAGATCTTACACG 59.851 38.462 8.75 0.00 32.03 4.49
29 30 3.247006 TCCCAGAAAGATCTTACACGC 57.753 47.619 8.75 0.00 32.03 5.34
30 31 2.832129 TCCCAGAAAGATCTTACACGCT 59.168 45.455 8.75 0.00 32.03 5.07
31 32 3.260884 TCCCAGAAAGATCTTACACGCTT 59.739 43.478 8.75 0.00 32.03 4.68
32 33 3.619038 CCCAGAAAGATCTTACACGCTTC 59.381 47.826 8.75 0.48 32.03 3.86
33 34 3.619038 CCAGAAAGATCTTACACGCTTCC 59.381 47.826 8.75 0.00 32.03 3.46
34 35 4.499183 CAGAAAGATCTTACACGCTTCCT 58.501 43.478 8.75 0.00 32.03 3.36
35 36 4.328440 CAGAAAGATCTTACACGCTTCCTG 59.672 45.833 8.75 2.29 32.03 3.86
36 37 3.963428 AAGATCTTACACGCTTCCTGT 57.037 42.857 6.06 0.00 0.00 4.00
37 38 3.963428 AGATCTTACACGCTTCCTGTT 57.037 42.857 0.00 0.00 0.00 3.16
38 39 3.851098 AGATCTTACACGCTTCCTGTTC 58.149 45.455 0.00 0.00 0.00 3.18
39 40 2.060326 TCTTACACGCTTCCTGTTCG 57.940 50.000 0.00 0.00 0.00 3.95
40 41 1.338973 TCTTACACGCTTCCTGTTCGT 59.661 47.619 0.00 0.00 36.84 3.85
41 42 2.132762 CTTACACGCTTCCTGTTCGTT 58.867 47.619 0.00 0.00 33.84 3.85
42 43 2.228138 TACACGCTTCCTGTTCGTTT 57.772 45.000 0.00 0.00 33.84 3.60
43 44 1.375551 ACACGCTTCCTGTTCGTTTT 58.624 45.000 0.00 0.00 33.84 2.43
44 45 2.553086 ACACGCTTCCTGTTCGTTTTA 58.447 42.857 0.00 0.00 33.84 1.52
45 46 2.937799 ACACGCTTCCTGTTCGTTTTAA 59.062 40.909 0.00 0.00 33.84 1.52
46 47 3.001939 ACACGCTTCCTGTTCGTTTTAAG 59.998 43.478 0.00 0.00 33.84 1.85
47 48 2.032290 ACGCTTCCTGTTCGTTTTAAGC 60.032 45.455 0.00 0.00 36.77 3.09
48 49 2.664698 CGCTTCCTGTTCGTTTTAAGCC 60.665 50.000 0.00 0.00 36.79 4.35
49 50 2.552743 GCTTCCTGTTCGTTTTAAGCCT 59.447 45.455 0.00 0.00 34.64 4.58
50 51 3.365064 GCTTCCTGTTCGTTTTAAGCCTC 60.365 47.826 0.00 0.00 34.64 4.70
51 52 3.764237 TCCTGTTCGTTTTAAGCCTCT 57.236 42.857 0.00 0.00 0.00 3.69
52 53 4.877378 TCCTGTTCGTTTTAAGCCTCTA 57.123 40.909 0.00 0.00 0.00 2.43
53 54 5.416271 TCCTGTTCGTTTTAAGCCTCTAT 57.584 39.130 0.00 0.00 0.00 1.98
54 55 5.416947 TCCTGTTCGTTTTAAGCCTCTATC 58.583 41.667 0.00 0.00 0.00 2.08
55 56 5.187186 TCCTGTTCGTTTTAAGCCTCTATCT 59.813 40.000 0.00 0.00 0.00 1.98
56 57 6.379133 TCCTGTTCGTTTTAAGCCTCTATCTA 59.621 38.462 0.00 0.00 0.00 1.98
57 58 6.476053 CCTGTTCGTTTTAAGCCTCTATCTAC 59.524 42.308 0.00 0.00 0.00 2.59
58 59 7.166691 TGTTCGTTTTAAGCCTCTATCTACT 57.833 36.000 0.00 0.00 0.00 2.57
59 60 7.033791 TGTTCGTTTTAAGCCTCTATCTACTG 58.966 38.462 0.00 0.00 0.00 2.74
60 61 5.589192 TCGTTTTAAGCCTCTATCTACTGC 58.411 41.667 0.00 0.00 0.00 4.40
61 62 5.126545 TCGTTTTAAGCCTCTATCTACTGCA 59.873 40.000 0.00 0.00 0.00 4.41
62 63 5.986135 CGTTTTAAGCCTCTATCTACTGCAT 59.014 40.000 0.00 0.00 0.00 3.96
63 64 7.013942 TCGTTTTAAGCCTCTATCTACTGCATA 59.986 37.037 0.00 0.00 0.00 3.14
64 65 7.115095 CGTTTTAAGCCTCTATCTACTGCATAC 59.885 40.741 0.00 0.00 0.00 2.39
65 66 7.597288 TTTAAGCCTCTATCTACTGCATACA 57.403 36.000 0.00 0.00 0.00 2.29
66 67 5.461032 AAGCCTCTATCTACTGCATACAC 57.539 43.478 0.00 0.00 0.00 2.90
67 68 4.735369 AGCCTCTATCTACTGCATACACT 58.265 43.478 0.00 0.00 0.00 3.55
68 69 4.522405 AGCCTCTATCTACTGCATACACTG 59.478 45.833 0.00 0.00 0.00 3.66
69 70 4.279671 GCCTCTATCTACTGCATACACTGT 59.720 45.833 0.00 0.00 0.00 3.55
70 71 5.473846 GCCTCTATCTACTGCATACACTGTA 59.526 44.000 0.00 0.00 0.00 2.74
71 72 6.568844 GCCTCTATCTACTGCATACACTGTAC 60.569 46.154 0.00 0.00 0.00 2.90
72 73 6.486993 CCTCTATCTACTGCATACACTGTACA 59.513 42.308 0.00 0.00 0.00 2.90
73 74 7.308288 CCTCTATCTACTGCATACACTGTACAG 60.308 44.444 21.44 21.44 0.00 2.74
74 75 7.280356 TCTATCTACTGCATACACTGTACAGA 58.720 38.462 29.30 7.59 32.67 3.41
75 76 5.819825 TCTACTGCATACACTGTACAGAG 57.180 43.478 29.30 23.15 32.67 3.35
76 77 3.876274 ACTGCATACACTGTACAGAGG 57.124 47.619 29.30 21.00 32.67 3.69
77 78 2.093973 ACTGCATACACTGTACAGAGGC 60.094 50.000 29.30 19.51 32.67 4.70
78 79 1.899142 TGCATACACTGTACAGAGGCA 59.101 47.619 29.30 21.80 0.00 4.75
79 80 2.271800 GCATACACTGTACAGAGGCAC 58.728 52.381 29.30 9.89 0.00 5.01
80 81 2.530177 CATACACTGTACAGAGGCACG 58.470 52.381 29.30 11.66 0.00 5.34
81 82 0.885879 TACACTGTACAGAGGCACGG 59.114 55.000 29.30 10.94 0.00 4.94
82 83 1.738099 CACTGTACAGAGGCACGGC 60.738 63.158 29.30 0.00 0.00 5.68
83 84 2.207229 ACTGTACAGAGGCACGGCA 61.207 57.895 29.30 0.00 0.00 5.69
84 85 1.738099 CTGTACAGAGGCACGGCAC 60.738 63.158 18.45 0.00 0.00 5.01
85 86 2.342279 GTACAGAGGCACGGCACA 59.658 61.111 0.00 0.00 0.00 4.57
86 87 1.301401 GTACAGAGGCACGGCACAA 60.301 57.895 0.00 0.00 0.00 3.33
87 88 0.673644 GTACAGAGGCACGGCACAAT 60.674 55.000 0.00 0.00 0.00 2.71
88 89 0.391130 TACAGAGGCACGGCACAATC 60.391 55.000 0.00 0.00 0.00 2.67
89 90 1.672030 CAGAGGCACGGCACAATCA 60.672 57.895 0.00 0.00 0.00 2.57
90 91 1.073025 AGAGGCACGGCACAATCAA 59.927 52.632 0.00 0.00 0.00 2.57
91 92 1.210155 GAGGCACGGCACAATCAAC 59.790 57.895 0.00 0.00 0.00 3.18
92 93 1.228245 AGGCACGGCACAATCAACT 60.228 52.632 0.00 0.00 0.00 3.16
93 94 0.036164 AGGCACGGCACAATCAACTA 59.964 50.000 0.00 0.00 0.00 2.24
94 95 0.168128 GGCACGGCACAATCAACTAC 59.832 55.000 0.00 0.00 0.00 2.73
95 96 1.156736 GCACGGCACAATCAACTACT 58.843 50.000 0.00 0.00 0.00 2.57
96 97 1.535462 GCACGGCACAATCAACTACTT 59.465 47.619 0.00 0.00 0.00 2.24
97 98 2.412847 GCACGGCACAATCAACTACTTC 60.413 50.000 0.00 0.00 0.00 3.01
98 99 2.805671 CACGGCACAATCAACTACTTCA 59.194 45.455 0.00 0.00 0.00 3.02
99 100 3.249799 CACGGCACAATCAACTACTTCAA 59.750 43.478 0.00 0.00 0.00 2.69
100 101 4.072131 ACGGCACAATCAACTACTTCAAT 58.928 39.130 0.00 0.00 0.00 2.57
101 102 4.518970 ACGGCACAATCAACTACTTCAATT 59.481 37.500 0.00 0.00 0.00 2.32
102 103 5.088739 CGGCACAATCAACTACTTCAATTC 58.911 41.667 0.00 0.00 0.00 2.17
103 104 5.334802 CGGCACAATCAACTACTTCAATTCA 60.335 40.000 0.00 0.00 0.00 2.57
104 105 5.858581 GGCACAATCAACTACTTCAATTCAC 59.141 40.000 0.00 0.00 0.00 3.18
105 106 6.294176 GGCACAATCAACTACTTCAATTCACT 60.294 38.462 0.00 0.00 0.00 3.41
106 107 7.094805 GGCACAATCAACTACTTCAATTCACTA 60.095 37.037 0.00 0.00 0.00 2.74
107 108 7.959651 GCACAATCAACTACTTCAATTCACTAG 59.040 37.037 0.00 0.00 0.00 2.57
108 109 7.959651 CACAATCAACTACTTCAATTCACTAGC 59.040 37.037 0.00 0.00 0.00 3.42
109 110 7.661437 ACAATCAACTACTTCAATTCACTAGCA 59.339 33.333 0.00 0.00 0.00 3.49
110 111 8.506437 CAATCAACTACTTCAATTCACTAGCAA 58.494 33.333 0.00 0.00 0.00 3.91
111 112 8.798859 ATCAACTACTTCAATTCACTAGCAAT 57.201 30.769 0.00 0.00 0.00 3.56
112 113 9.890629 ATCAACTACTTCAATTCACTAGCAATA 57.109 29.630 0.00 0.00 0.00 1.90
113 114 9.371136 TCAACTACTTCAATTCACTAGCAATAG 57.629 33.333 0.00 0.00 0.00 1.73
114 115 9.155975 CAACTACTTCAATTCACTAGCAATAGT 57.844 33.333 0.00 0.00 0.00 2.12
115 116 9.726438 AACTACTTCAATTCACTAGCAATAGTT 57.274 29.630 0.00 0.00 0.00 2.24
116 117 9.726438 ACTACTTCAATTCACTAGCAATAGTTT 57.274 29.630 0.00 0.00 0.00 2.66
118 119 8.045176 ACTTCAATTCACTAGCAATAGTTTCC 57.955 34.615 0.00 0.00 0.00 3.13
119 120 7.885399 ACTTCAATTCACTAGCAATAGTTTCCT 59.115 33.333 0.00 0.00 0.00 3.36
120 121 7.849804 TCAATTCACTAGCAATAGTTTCCTC 57.150 36.000 0.00 0.00 0.00 3.71
121 122 7.624549 TCAATTCACTAGCAATAGTTTCCTCT 58.375 34.615 0.00 0.00 0.00 3.69
122 123 8.758829 TCAATTCACTAGCAATAGTTTCCTCTA 58.241 33.333 0.00 0.00 0.00 2.43
123 124 8.821894 CAATTCACTAGCAATAGTTTCCTCTAC 58.178 37.037 0.00 0.00 0.00 2.59
124 125 7.719871 TTCACTAGCAATAGTTTCCTCTACT 57.280 36.000 0.00 0.00 0.00 2.57
125 126 7.719871 TCACTAGCAATAGTTTCCTCTACTT 57.280 36.000 0.00 0.00 0.00 2.24
126 127 7.773149 TCACTAGCAATAGTTTCCTCTACTTC 58.227 38.462 0.00 0.00 0.00 3.01
127 128 7.396339 TCACTAGCAATAGTTTCCTCTACTTCA 59.604 37.037 0.00 0.00 0.00 3.02
128 129 8.035394 CACTAGCAATAGTTTCCTCTACTTCAA 58.965 37.037 0.00 0.00 0.00 2.69
129 130 8.763601 ACTAGCAATAGTTTCCTCTACTTCAAT 58.236 33.333 0.00 0.00 0.00 2.57
130 131 7.856145 AGCAATAGTTTCCTCTACTTCAATG 57.144 36.000 0.00 0.00 0.00 2.82
131 132 6.317391 AGCAATAGTTTCCTCTACTTCAATGC 59.683 38.462 0.00 0.00 0.00 3.56
132 133 6.094048 GCAATAGTTTCCTCTACTTCAATGCA 59.906 38.462 0.00 0.00 0.00 3.96
133 134 7.467623 CAATAGTTTCCTCTACTTCAATGCAC 58.532 38.462 0.00 0.00 0.00 4.57
134 135 3.997021 AGTTTCCTCTACTTCAATGCACG 59.003 43.478 0.00 0.00 0.00 5.34
135 136 2.672961 TCCTCTACTTCAATGCACGG 57.327 50.000 0.00 0.00 0.00 4.94
136 137 1.009829 CCTCTACTTCAATGCACGGC 58.990 55.000 0.00 0.00 0.00 5.68
137 138 1.675714 CCTCTACTTCAATGCACGGCA 60.676 52.381 0.00 1.01 44.86 5.69
138 139 1.394917 CTCTACTTCAATGCACGGCAC 59.605 52.381 0.50 0.00 43.04 5.01
156 157 2.735126 GCACGGCACAATTCATTAAGGG 60.735 50.000 0.00 0.00 0.00 3.95
165 166 6.041296 GCACAATTCATTAAGGGAAGATGGAT 59.959 38.462 10.39 0.00 0.00 3.41
209 210 3.869481 GGCCAAGAAAAGCCCACA 58.131 55.556 0.00 0.00 43.76 4.17
210 211 2.132300 GGCCAAGAAAAGCCCACAA 58.868 52.632 0.00 0.00 43.76 3.33
211 212 0.249868 GGCCAAGAAAAGCCCACAAC 60.250 55.000 0.00 0.00 43.76 3.32
212 213 0.463620 GCCAAGAAAAGCCCACAACA 59.536 50.000 0.00 0.00 0.00 3.33
213 214 1.134551 GCCAAGAAAAGCCCACAACAA 60.135 47.619 0.00 0.00 0.00 2.83
214 215 2.825205 CCAAGAAAAGCCCACAACAAG 58.175 47.619 0.00 0.00 0.00 3.16
215 216 2.430332 CCAAGAAAAGCCCACAACAAGA 59.570 45.455 0.00 0.00 0.00 3.02
216 217 3.118811 CCAAGAAAAGCCCACAACAAGAA 60.119 43.478 0.00 0.00 0.00 2.52
217 218 4.114794 CAAGAAAAGCCCACAACAAGAAG 58.885 43.478 0.00 0.00 0.00 2.85
218 219 2.101415 AGAAAAGCCCACAACAAGAAGC 59.899 45.455 0.00 0.00 0.00 3.86
219 220 0.752658 AAAGCCCACAACAAGAAGCC 59.247 50.000 0.00 0.00 0.00 4.35
232 233 0.749454 AGAAGCCCGCCATGATGAAC 60.749 55.000 0.00 0.00 0.00 3.18
233 234 1.001020 AAGCCCGCCATGATGAACA 60.001 52.632 0.00 0.00 0.00 3.18
254 255 4.572389 ACAATGATGGCACGAGAGAATTAC 59.428 41.667 0.00 0.00 0.00 1.89
259 260 3.521560 TGGCACGAGAGAATTACATGTC 58.478 45.455 0.00 0.00 0.00 3.06
265 266 6.257849 GCACGAGAGAATTACATGTCCAATTA 59.742 38.462 0.00 0.00 0.00 1.40
266 267 7.517417 GCACGAGAGAATTACATGTCCAATTAG 60.517 40.741 0.00 0.00 0.00 1.73
267 268 6.480320 ACGAGAGAATTACATGTCCAATTAGC 59.520 38.462 0.00 0.11 0.00 3.09
268 269 6.479990 CGAGAGAATTACATGTCCAATTAGCA 59.520 38.462 0.00 0.00 0.00 3.49
269 270 7.517417 CGAGAGAATTACATGTCCAATTAGCAC 60.517 40.741 0.00 0.00 0.00 4.40
271 272 6.112734 AGAATTACATGTCCAATTAGCACGA 58.887 36.000 0.00 0.00 0.00 4.35
272 273 6.767902 AGAATTACATGTCCAATTAGCACGAT 59.232 34.615 0.00 0.00 0.00 3.73
273 274 5.733226 TTACATGTCCAATTAGCACGATG 57.267 39.130 0.00 0.00 0.00 3.84
284 290 7.445096 TCCAATTAGCACGATGATGATGTATTT 59.555 33.333 0.00 0.00 0.00 1.40
321 327 1.069500 GCTAGCTAGCTAGAGCGACAC 60.069 57.143 42.59 25.24 46.56 3.67
347 353 3.440415 CCGGCCGCTCCTTTTTCC 61.440 66.667 22.85 0.00 0.00 3.13
355 361 2.619074 CCGCTCCTTTTTCCTCTCCAAT 60.619 50.000 0.00 0.00 0.00 3.16
358 364 4.333926 CGCTCCTTTTTCCTCTCCAATAAG 59.666 45.833 0.00 0.00 0.00 1.73
374 380 0.028505 TAAGTCGTCCATCGCTACGC 59.971 55.000 0.00 0.00 38.94 4.42
387 393 0.249531 GCTACGCTAGGGCTTCTTCC 60.250 60.000 6.73 0.00 36.09 3.46
416 443 1.066215 CGACCACCATCAACATCTCCA 60.066 52.381 0.00 0.00 0.00 3.86
419 446 2.376518 ACCACCATCAACATCTCCAACT 59.623 45.455 0.00 0.00 0.00 3.16
430 457 4.124351 TCCAACTCTACGCCGCCG 62.124 66.667 0.00 0.00 41.14 6.46
513 540 7.041372 GGTTTGACATTGCAGTTAGAGTAAGAA 60.041 37.037 0.00 0.00 0.00 2.52
573 685 7.254795 GCATTATAAGATGACAAGTACACCACC 60.255 40.741 0.00 0.00 0.00 4.61
603 715 2.159382 CTTCTTTAAGCCGGCCTGAAA 58.841 47.619 26.15 19.28 0.00 2.69
618 730 6.037610 CCGGCCTGAAAATTCATATATAGAGC 59.962 42.308 0.00 0.00 36.46 4.09
633 745 9.860898 CATATATAGAGCTACACTTTATGCACA 57.139 33.333 0.00 0.00 29.03 4.57
634 746 9.862371 ATATATAGAGCTACACTTTATGCACAC 57.138 33.333 0.00 0.00 29.03 3.82
635 747 4.271696 AGAGCTACACTTTATGCACACA 57.728 40.909 0.00 0.00 0.00 3.72
639 751 6.039270 AGAGCTACACTTTATGCACACAAAAA 59.961 34.615 0.00 0.00 0.00 1.94
716 831 5.776744 ACTTTGCAAACATCATTCTCTTCC 58.223 37.500 8.05 0.00 0.00 3.46
728 843 2.951229 TCTCTTCCAAACCCTGGTTC 57.049 50.000 1.29 0.00 46.51 3.62
729 844 2.131854 TCTCTTCCAAACCCTGGTTCA 58.868 47.619 1.29 0.00 46.51 3.18
730 845 2.716424 TCTCTTCCAAACCCTGGTTCAT 59.284 45.455 1.29 0.00 46.51 2.57
731 846 3.913799 TCTCTTCCAAACCCTGGTTCATA 59.086 43.478 1.29 0.00 46.51 2.15
732 847 4.540099 TCTCTTCCAAACCCTGGTTCATAT 59.460 41.667 1.29 0.00 46.51 1.78
733 848 5.729229 TCTCTTCCAAACCCTGGTTCATATA 59.271 40.000 1.29 0.00 46.51 0.86
734 849 6.389869 TCTCTTCCAAACCCTGGTTCATATAT 59.610 38.462 1.29 0.00 46.51 0.86
735 850 7.570982 TCTCTTCCAAACCCTGGTTCATATATA 59.429 37.037 1.29 0.00 46.51 0.86
736 851 7.514721 TCTTCCAAACCCTGGTTCATATATAC 58.485 38.462 1.29 0.00 46.51 1.47
737 852 6.833346 TCCAAACCCTGGTTCATATATACA 57.167 37.500 1.29 0.00 46.51 2.29
738 853 7.214460 TCCAAACCCTGGTTCATATATACAA 57.786 36.000 1.29 0.00 46.51 2.41
739 854 7.644062 TCCAAACCCTGGTTCATATATACAAA 58.356 34.615 1.29 0.00 46.51 2.83
740 855 8.116669 TCCAAACCCTGGTTCATATATACAAAA 58.883 33.333 1.29 0.00 46.51 2.44
741 856 8.194769 CCAAACCCTGGTTCATATATACAAAAC 58.805 37.037 1.29 0.00 40.78 2.43
742 857 8.744652 CAAACCCTGGTTCATATATACAAAACA 58.255 33.333 1.29 2.72 37.35 2.83
743 858 7.875327 ACCCTGGTTCATATATACAAAACAC 57.125 36.000 0.00 0.00 0.00 3.32
744 859 7.406916 ACCCTGGTTCATATATACAAAACACA 58.593 34.615 0.00 0.00 0.00 3.72
745 860 7.338449 ACCCTGGTTCATATATACAAAACACAC 59.662 37.037 0.00 0.00 0.00 3.82
746 861 7.406553 CCTGGTTCATATATACAAAACACACG 58.593 38.462 6.23 0.00 0.00 4.49
751 866 7.703298 TCATATATACAAAACACACGTAGCC 57.297 36.000 0.00 0.00 0.00 3.93
799 914 0.326264 CCTAGCAGCTCAAACCCTGT 59.674 55.000 0.00 0.00 0.00 4.00
800 915 1.271597 CCTAGCAGCTCAAACCCTGTT 60.272 52.381 0.00 0.00 0.00 3.16
804 919 0.593128 CAGCTCAAACCCTGTTTCCG 59.407 55.000 0.00 0.00 0.00 4.30
810 925 4.324267 CTCAAACCCTGTTTCCGAAGTAT 58.676 43.478 0.00 0.00 0.00 2.12
811 926 5.484715 CTCAAACCCTGTTTCCGAAGTATA 58.515 41.667 0.00 0.00 0.00 1.47
812 927 5.867330 TCAAACCCTGTTTCCGAAGTATAA 58.133 37.500 0.00 0.00 0.00 0.98
815 930 4.572909 ACCCTGTTTCCGAAGTATAACAC 58.427 43.478 0.00 0.00 0.00 3.32
816 931 4.040706 ACCCTGTTTCCGAAGTATAACACA 59.959 41.667 0.00 0.00 0.00 3.72
817 932 4.998672 CCCTGTTTCCGAAGTATAACACAA 59.001 41.667 0.00 0.00 0.00 3.33
818 933 5.646360 CCCTGTTTCCGAAGTATAACACAAT 59.354 40.000 0.00 0.00 0.00 2.71
820 935 7.308951 CCCTGTTTCCGAAGTATAACACAATTT 60.309 37.037 0.00 0.00 0.00 1.82
821 936 8.079809 CCTGTTTCCGAAGTATAACACAATTTT 58.920 33.333 0.00 0.00 0.00 1.82
822 937 9.113876 CTGTTTCCGAAGTATAACACAATTTTC 57.886 33.333 0.00 0.00 0.00 2.29
823 938 8.622157 TGTTTCCGAAGTATAACACAATTTTCA 58.378 29.630 0.00 0.00 0.00 2.69
881 1206 2.816672 TGCAAATGCCTTCATTACGTGA 59.183 40.909 0.00 0.00 41.77 4.35
891 1216 6.313658 TGCCTTCATTACGTGATGCATATATC 59.686 38.462 15.05 0.00 38.96 1.63
901 1226 6.097981 ACGTGATGCATATATCTCTCCATCAT 59.902 38.462 0.00 0.00 40.49 2.45
1116 1465 2.860735 GGTGATTAAGTACTCGCTGCTG 59.139 50.000 0.00 0.00 0.00 4.41
1120 1469 0.456221 TAAGTACTCGCTGCTGGAGC 59.544 55.000 11.48 11.48 45.20 4.70
1188 1539 2.674177 CGGCTACGAGTGGAAAATCAGT 60.674 50.000 0.00 0.00 44.60 3.41
1323 1674 5.654209 ACTGGAGAAAGATGGGAAAATTAGC 59.346 40.000 0.00 0.00 0.00 3.09
1367 1721 6.715264 ACAACAGCTAAATTTAAGCCTGTAGT 59.285 34.615 18.47 8.08 41.02 2.73
1368 1722 7.881232 ACAACAGCTAAATTTAAGCCTGTAGTA 59.119 33.333 18.47 0.00 41.02 1.82
1369 1723 8.391106 CAACAGCTAAATTTAAGCCTGTAGTAG 58.609 37.037 18.47 10.40 41.02 2.57
1423 1777 1.771255 AGTCCAAGCTCAAGGAACTGT 59.229 47.619 4.28 0.00 40.86 3.55
1426 1780 1.610522 CCAAGCTCAAGGAACTGTTGG 59.389 52.381 0.00 0.00 40.86 3.77
1531 1891 2.047844 CCCAGTCAGACCTGCACG 60.048 66.667 0.00 0.00 0.00 5.34
1614 1974 3.005554 CCAACTCTTCAGTGCACATAGG 58.994 50.000 21.04 6.93 31.06 2.57
1626 1986 2.231721 TGCACATAGGTACGTGTTAGCA 59.768 45.455 0.00 1.70 35.51 3.49
1718 2078 2.439156 GGACATGGAGCCTGCCAC 60.439 66.667 0.00 0.00 41.56 5.01
1734 2094 0.390472 CCACCTTCGAGGCACTTCTC 60.390 60.000 1.36 0.00 41.55 2.87
1771 2131 3.445096 AGATAACCTGCCAAGCAATTGTC 59.555 43.478 7.40 0.00 38.41 3.18
1788 2148 8.089597 AGCAATTGTCATGTTGATCAAAATGTA 58.910 29.630 29.48 20.25 37.32 2.29
1815 2175 4.368808 CACTTGTTGGTCGCCGCG 62.369 66.667 6.39 6.39 0.00 6.46
1842 2202 2.789409 ATGGACTGGACAGGCTAAAC 57.211 50.000 4.99 0.00 36.46 2.01
2293 4505 6.102897 TCTGTTGTTCTCTTTCTCCCTTAG 57.897 41.667 0.00 0.00 0.00 2.18
2294 4506 5.602978 TCTGTTGTTCTCTTTCTCCCTTAGT 59.397 40.000 0.00 0.00 0.00 2.24
2296 4508 6.659824 TGTTGTTCTCTTTCTCCCTTAGTTT 58.340 36.000 0.00 0.00 0.00 2.66
2297 4509 7.116736 TGTTGTTCTCTTTCTCCCTTAGTTTT 58.883 34.615 0.00 0.00 0.00 2.43
2298 4510 7.614192 TGTTGTTCTCTTTCTCCCTTAGTTTTT 59.386 33.333 0.00 0.00 0.00 1.94
2299 4511 7.568199 TGTTCTCTTTCTCCCTTAGTTTTTG 57.432 36.000 0.00 0.00 0.00 2.44
2300 4512 6.039382 TGTTCTCTTTCTCCCTTAGTTTTTGC 59.961 38.462 0.00 0.00 0.00 3.68
2301 4513 5.070685 TCTCTTTCTCCCTTAGTTTTTGCC 58.929 41.667 0.00 0.00 0.00 4.52
2324 4536 5.350504 TTTTTGGCAGTGAATTTTCCTGA 57.649 34.783 0.00 0.00 31.39 3.86
2330 4542 3.569701 GCAGTGAATTTTCCTGAAGACCA 59.430 43.478 0.00 0.00 31.39 4.02
2331 4543 4.557496 GCAGTGAATTTTCCTGAAGACCAC 60.557 45.833 0.00 0.00 31.39 4.16
2333 4545 5.242393 CAGTGAATTTTCCTGAAGACCACAT 59.758 40.000 0.00 0.00 31.39 3.21
2334 4546 5.835280 AGTGAATTTTCCTGAAGACCACATT 59.165 36.000 0.00 0.00 0.00 2.71
2335 4547 6.015940 AGTGAATTTTCCTGAAGACCACATTC 60.016 38.462 0.00 0.00 0.00 2.67
2336 4548 5.243730 TGAATTTTCCTGAAGACCACATTCC 59.756 40.000 0.00 0.00 0.00 3.01
2337 4549 4.453480 TTTTCCTGAAGACCACATTCCT 57.547 40.909 0.00 0.00 0.00 3.36
2338 4550 3.703001 TTCCTGAAGACCACATTCCTC 57.297 47.619 0.00 0.00 0.00 3.71
2339 4551 2.907892 TCCTGAAGACCACATTCCTCT 58.092 47.619 0.00 0.00 0.00 3.69
2340 4552 3.251484 TCCTGAAGACCACATTCCTCTT 58.749 45.455 0.00 0.00 0.00 2.85
2341 4553 3.008375 TCCTGAAGACCACATTCCTCTTG 59.992 47.826 0.00 0.00 0.00 3.02
2342 4554 3.008375 CCTGAAGACCACATTCCTCTTGA 59.992 47.826 0.00 0.00 0.00 3.02
2343 4555 4.505566 CCTGAAGACCACATTCCTCTTGAA 60.506 45.833 0.00 0.00 37.38 2.69
2344 4556 4.389374 TGAAGACCACATTCCTCTTGAAC 58.611 43.478 0.00 0.00 35.31 3.18
2345 4557 3.425162 AGACCACATTCCTCTTGAACC 57.575 47.619 0.00 0.00 35.31 3.62
2346 4558 2.982488 AGACCACATTCCTCTTGAACCT 59.018 45.455 0.00 0.00 35.31 3.50
2347 4559 3.395941 AGACCACATTCCTCTTGAACCTT 59.604 43.478 0.00 0.00 35.31 3.50
2348 4560 4.597507 AGACCACATTCCTCTTGAACCTTA 59.402 41.667 0.00 0.00 35.31 2.69
2349 4561 4.652822 ACCACATTCCTCTTGAACCTTAC 58.347 43.478 0.00 0.00 35.31 2.34
2350 4562 4.010349 CCACATTCCTCTTGAACCTTACC 58.990 47.826 0.00 0.00 35.31 2.85
2351 4563 4.263506 CCACATTCCTCTTGAACCTTACCT 60.264 45.833 0.00 0.00 35.31 3.08
2352 4564 5.316987 CACATTCCTCTTGAACCTTACCTT 58.683 41.667 0.00 0.00 35.31 3.50
2353 4565 5.412904 CACATTCCTCTTGAACCTTACCTTC 59.587 44.000 0.00 0.00 35.31 3.46
2354 4566 3.955650 TCCTCTTGAACCTTACCTTCG 57.044 47.619 0.00 0.00 0.00 3.79
2355 4567 3.236896 TCCTCTTGAACCTTACCTTCGT 58.763 45.455 0.00 0.00 0.00 3.85
2356 4568 3.006537 TCCTCTTGAACCTTACCTTCGTG 59.993 47.826 0.00 0.00 0.00 4.35
2357 4569 3.326747 CTCTTGAACCTTACCTTCGTGG 58.673 50.000 0.00 0.00 42.93 4.94
2358 4570 2.967201 TCTTGAACCTTACCTTCGTGGA 59.033 45.455 4.38 0.00 39.71 4.02
2359 4571 3.006537 TCTTGAACCTTACCTTCGTGGAG 59.993 47.826 4.38 0.00 39.71 3.86
2372 4584 4.492611 CTTCGTGGAGAACTAGGTTTACC 58.507 47.826 0.00 0.00 34.66 2.85
2398 4610 9.426534 CTATTCTGATATGGATGTATACTGGGA 57.573 37.037 4.17 0.00 0.00 4.37
2406 4618 3.584848 GGATGTATACTGGGATGGAGCTT 59.415 47.826 4.17 0.00 0.00 3.74
2413 4625 1.005215 CTGGGATGGAGCTTTGAACCT 59.995 52.381 0.00 0.00 0.00 3.50
2414 4626 1.428912 TGGGATGGAGCTTTGAACCTT 59.571 47.619 0.00 0.00 0.00 3.50
2426 4638 4.202111 GCTTTGAACCTTACCTTCTTTGCA 60.202 41.667 0.00 0.00 0.00 4.08
2429 4641 4.134563 TGAACCTTACCTTCTTTGCAGTC 58.865 43.478 0.00 0.00 0.00 3.51
2430 4642 3.141767 ACCTTACCTTCTTTGCAGTCC 57.858 47.619 0.00 0.00 0.00 3.85
2431 4643 2.224793 ACCTTACCTTCTTTGCAGTCCC 60.225 50.000 0.00 0.00 0.00 4.46
2432 4644 2.076863 CTTACCTTCTTTGCAGTCCCG 58.923 52.381 0.00 0.00 0.00 5.14
2433 4645 0.323629 TACCTTCTTTGCAGTCCCGG 59.676 55.000 0.00 0.00 0.00 5.73
2434 4646 1.073199 CCTTCTTTGCAGTCCCGGT 59.927 57.895 0.00 0.00 0.00 5.28
2435 4647 0.955919 CCTTCTTTGCAGTCCCGGTC 60.956 60.000 0.00 0.00 0.00 4.79
2451 4663 0.906282 GGTCCCGTACTCCCTTCCAA 60.906 60.000 0.00 0.00 0.00 3.53
2452 4664 0.535797 GTCCCGTACTCCCTTCCAAG 59.464 60.000 0.00 0.00 0.00 3.61
2463 4675 4.790790 ACTCCCTTCCAAGTCCAGATATTT 59.209 41.667 0.00 0.00 0.00 1.40
2489 4781 1.278127 GGAACTCCTGTTTCCGATGGA 59.722 52.381 0.00 0.00 36.39 3.41
2491 4783 6.272945 TGGAACTCCTGTTTCCGATGGAAA 62.273 45.833 6.91 6.91 41.90 3.13
2516 4838 8.995027 AAACAGTTATTATTGCTGGGATATGA 57.005 30.769 0.00 0.00 34.79 2.15
2517 4839 7.986085 ACAGTTATTATTGCTGGGATATGAC 57.014 36.000 0.00 0.00 34.79 3.06
2526 4848 4.009675 TGCTGGGATATGACAAGAACAAC 58.990 43.478 0.00 0.00 0.00 3.32
2533 4855 6.183360 GGGATATGACAAGAACAACAGTTAGC 60.183 42.308 0.00 0.00 0.00 3.09
2557 4882 6.201044 GCGTCTATTTCAGCTCAGCTAAATAA 59.799 38.462 0.00 0.00 36.40 1.40
2560 4885 5.764487 ATTTCAGCTCAGCTAAATAAGGC 57.236 39.130 0.00 0.00 36.40 4.35
2564 4889 3.064545 CAGCTCAGCTAAATAAGGCACAC 59.935 47.826 0.00 0.00 36.40 3.82
2568 4893 2.423538 CAGCTAAATAAGGCACACCCAC 59.576 50.000 0.00 0.00 36.11 4.61
2571 4896 1.256812 AAATAAGGCACACCCACAGC 58.743 50.000 0.00 0.00 36.11 4.40
2577 4902 1.633432 AGGCACACCCACAGCTAAATA 59.367 47.619 0.00 0.00 36.11 1.40
2579 4904 2.358898 GGCACACCCACAGCTAAATATG 59.641 50.000 0.00 0.00 0.00 1.78
2582 4907 4.201950 GCACACCCACAGCTAAATATGAAG 60.202 45.833 0.00 0.00 0.00 3.02
2583 4908 3.947834 ACACCCACAGCTAAATATGAAGC 59.052 43.478 2.07 2.07 39.08 3.86
2585 4910 2.031682 CCCACAGCTAAATATGAAGCGC 60.032 50.000 0.00 0.00 43.63 5.92
2586 4911 2.031682 CCACAGCTAAATATGAAGCGCC 60.032 50.000 2.29 0.00 43.63 6.53
2608 4986 4.401519 CCAATGGCATTCAATCTCAGAACT 59.598 41.667 10.36 0.00 0.00 3.01
2637 5170 7.505585 TCACTGATCCAAAAACAAAGATAACCT 59.494 33.333 0.00 0.00 0.00 3.50
2648 5187 9.479549 AAAACAAAGATAACCTGTCATGGATAT 57.520 29.630 0.00 0.00 0.00 1.63
2704 5257 9.454859 AAGAAGCTCACTAAAATATAGCAAAGT 57.545 29.630 0.00 0.00 35.63 2.66
2709 5262 9.922305 GCTCACTAAAATATAGCAAAGTACTTG 57.078 33.333 9.34 4.88 38.15 3.16
2736 5290 1.878953 TTCTTGCCGACTCTTTCCAC 58.121 50.000 0.00 0.00 0.00 4.02
2746 5300 4.023963 CCGACTCTTTCCACTTCTTTTTCC 60.024 45.833 0.00 0.00 0.00 3.13
2760 5314 3.949113 TCTTTTTCCAACAACTTAGCGGT 59.051 39.130 0.00 0.00 0.00 5.68
2776 5330 2.023788 GCGGTTTCATCCATCCCATGT 61.024 52.381 0.00 0.00 0.00 3.21
2803 5357 6.829229 ATATATGCTTGAATCATGGTGGTG 57.171 37.500 0.00 0.00 0.00 4.17
2831 5385 1.133025 CCTTGCCAGGCTTACATTTCG 59.867 52.381 14.15 0.00 31.53 3.46
2836 5390 2.488153 GCCAGGCTTACATTTCGTTTCT 59.512 45.455 3.29 0.00 0.00 2.52
2842 5396 7.361713 CCAGGCTTACATTTCGTTTCTTTCATA 60.362 37.037 0.00 0.00 0.00 2.15
2843 5397 8.184192 CAGGCTTACATTTCGTTTCTTTCATAT 58.816 33.333 0.00 0.00 0.00 1.78
2844 5398 9.391006 AGGCTTACATTTCGTTTCTTTCATATA 57.609 29.630 0.00 0.00 0.00 0.86
2845 5399 9.997482 GGCTTACATTTCGTTTCTTTCATATAA 57.003 29.630 0.00 0.00 0.00 0.98
2850 5404 9.341899 ACATTTCGTTTCTTTCATATAAACTGC 57.658 29.630 0.00 0.00 32.25 4.40
2889 5443 4.842531 TTTGATATCTCCAGACTTGGCA 57.157 40.909 3.98 0.00 44.63 4.92
2890 5444 3.827008 TGATATCTCCAGACTTGGCAC 57.173 47.619 3.98 0.00 44.63 5.01
2900 5454 0.239347 GACTTGGCACATGCACTGAC 59.761 55.000 6.15 0.00 44.36 3.51
2902 5456 0.240145 CTTGGCACATGCACTGACAG 59.760 55.000 6.15 0.00 44.36 3.51
2903 5457 1.174078 TTGGCACATGCACTGACAGG 61.174 55.000 7.51 0.00 44.36 4.00
2945 5499 8.867097 AGTTTCTAAGACAACATAGGTGTTCTA 58.133 33.333 0.00 0.00 45.14 2.10
2962 5516 6.968904 GGTGTTCTACGTCTGTCGAATAATTA 59.031 38.462 0.00 0.00 42.86 1.40
2971 5525 5.231568 GTCTGTCGAATAATTACAGGAACCG 59.768 44.000 5.66 0.00 40.79 4.44
3018 5572 2.235155 TCCATTAACCAGCGAGCAGTAA 59.765 45.455 0.00 0.00 0.00 2.24
3038 5592 1.432807 AGTGATGGGGTTGGGTTTGAT 59.567 47.619 0.00 0.00 0.00 2.57
3050 5604 3.784178 TGGGTTTGATGCCCTGAATTTA 58.216 40.909 1.85 0.00 46.22 1.40
3051 5605 4.360889 TGGGTTTGATGCCCTGAATTTAT 58.639 39.130 1.85 0.00 46.22 1.40
3052 5606 4.161942 TGGGTTTGATGCCCTGAATTTATG 59.838 41.667 1.85 0.00 46.22 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.669243 GTGTAAGATCTTTCTGGGATTTTGTAG 58.331 37.037 14.36 0.00 30.72 2.74
3 4 6.149474 CGTGTAAGATCTTTCTGGGATTTTGT 59.851 38.462 14.36 0.00 30.72 2.83
4 5 6.546395 CGTGTAAGATCTTTCTGGGATTTTG 58.454 40.000 14.36 0.00 30.72 2.44
5 6 5.123979 GCGTGTAAGATCTTTCTGGGATTTT 59.876 40.000 14.36 0.00 30.72 1.82
6 7 4.636206 GCGTGTAAGATCTTTCTGGGATTT 59.364 41.667 14.36 0.00 30.72 2.17
9 10 2.832129 AGCGTGTAAGATCTTTCTGGGA 59.168 45.455 14.36 0.00 30.72 4.37
10 11 3.252974 AGCGTGTAAGATCTTTCTGGG 57.747 47.619 14.36 3.64 30.72 4.45
11 12 3.619038 GGAAGCGTGTAAGATCTTTCTGG 59.381 47.826 14.36 6.00 30.72 3.86
12 13 4.328440 CAGGAAGCGTGTAAGATCTTTCTG 59.672 45.833 14.36 6.88 36.27 3.02
13 14 4.021016 ACAGGAAGCGTGTAAGATCTTTCT 60.021 41.667 14.36 1.14 30.44 2.52
14 15 4.246458 ACAGGAAGCGTGTAAGATCTTTC 58.754 43.478 14.36 9.34 30.44 2.62
15 16 4.273148 ACAGGAAGCGTGTAAGATCTTT 57.727 40.909 14.36 0.00 30.44 2.52
16 17 3.963428 ACAGGAAGCGTGTAAGATCTT 57.037 42.857 13.56 13.56 30.44 2.40
17 18 3.673594 CGAACAGGAAGCGTGTAAGATCT 60.674 47.826 0.00 0.00 32.02 2.75
18 19 2.599082 CGAACAGGAAGCGTGTAAGATC 59.401 50.000 0.00 0.00 32.02 2.75
19 20 2.029290 ACGAACAGGAAGCGTGTAAGAT 60.029 45.455 0.00 0.00 36.83 2.40
20 21 1.338973 ACGAACAGGAAGCGTGTAAGA 59.661 47.619 0.00 0.00 36.83 2.10
21 22 1.779569 ACGAACAGGAAGCGTGTAAG 58.220 50.000 0.00 0.00 36.83 2.34
22 23 2.228138 AACGAACAGGAAGCGTGTAA 57.772 45.000 0.00 0.00 38.39 2.41
23 24 2.228138 AAACGAACAGGAAGCGTGTA 57.772 45.000 0.00 0.00 38.39 2.90
24 25 1.375551 AAAACGAACAGGAAGCGTGT 58.624 45.000 0.00 0.00 38.39 4.49
25 26 3.541711 CTTAAAACGAACAGGAAGCGTG 58.458 45.455 0.00 0.00 38.39 5.34
26 27 2.032290 GCTTAAAACGAACAGGAAGCGT 60.032 45.455 0.00 0.00 40.35 5.07
27 28 2.571206 GCTTAAAACGAACAGGAAGCG 58.429 47.619 0.00 0.00 31.00 4.68
28 29 2.552743 AGGCTTAAAACGAACAGGAAGC 59.447 45.455 0.00 0.00 38.82 3.86
29 30 4.065789 AGAGGCTTAAAACGAACAGGAAG 58.934 43.478 0.00 0.00 0.00 3.46
30 31 4.081322 AGAGGCTTAAAACGAACAGGAA 57.919 40.909 0.00 0.00 0.00 3.36
31 32 3.764237 AGAGGCTTAAAACGAACAGGA 57.236 42.857 0.00 0.00 0.00 3.86
32 33 5.420409 AGATAGAGGCTTAAAACGAACAGG 58.580 41.667 0.00 0.00 0.00 4.00
33 34 7.221067 CAGTAGATAGAGGCTTAAAACGAACAG 59.779 40.741 0.00 0.00 0.00 3.16
34 35 7.033791 CAGTAGATAGAGGCTTAAAACGAACA 58.966 38.462 0.00 0.00 0.00 3.18
35 36 6.019720 GCAGTAGATAGAGGCTTAAAACGAAC 60.020 42.308 0.00 0.00 0.00 3.95
36 37 6.040878 GCAGTAGATAGAGGCTTAAAACGAA 58.959 40.000 0.00 0.00 0.00 3.85
37 38 5.126545 TGCAGTAGATAGAGGCTTAAAACGA 59.873 40.000 0.00 0.00 0.00 3.85
38 39 5.348986 TGCAGTAGATAGAGGCTTAAAACG 58.651 41.667 0.00 0.00 0.00 3.60
39 40 7.926555 TGTATGCAGTAGATAGAGGCTTAAAAC 59.073 37.037 0.00 0.00 0.00 2.43
40 41 7.926555 GTGTATGCAGTAGATAGAGGCTTAAAA 59.073 37.037 0.00 0.00 0.00 1.52
41 42 7.287927 AGTGTATGCAGTAGATAGAGGCTTAAA 59.712 37.037 0.00 0.00 0.00 1.52
42 43 6.778069 AGTGTATGCAGTAGATAGAGGCTTAA 59.222 38.462 0.00 0.00 0.00 1.85
43 44 6.207614 CAGTGTATGCAGTAGATAGAGGCTTA 59.792 42.308 0.00 0.00 0.00 3.09
44 45 5.010516 CAGTGTATGCAGTAGATAGAGGCTT 59.989 44.000 0.00 0.00 0.00 4.35
45 46 4.522405 CAGTGTATGCAGTAGATAGAGGCT 59.478 45.833 0.00 0.00 0.00 4.58
46 47 4.279671 ACAGTGTATGCAGTAGATAGAGGC 59.720 45.833 0.00 0.00 0.00 4.70
47 48 6.486993 TGTACAGTGTATGCAGTAGATAGAGG 59.513 42.308 6.21 0.00 0.00 3.69
48 49 7.442666 TCTGTACAGTGTATGCAGTAGATAGAG 59.557 40.741 21.99 0.00 0.00 2.43
49 50 7.280356 TCTGTACAGTGTATGCAGTAGATAGA 58.720 38.462 21.99 1.38 0.00 1.98
50 51 7.308288 CCTCTGTACAGTGTATGCAGTAGATAG 60.308 44.444 21.99 6.45 0.00 2.08
51 52 6.486993 CCTCTGTACAGTGTATGCAGTAGATA 59.513 42.308 21.99 0.00 0.00 1.98
52 53 5.300539 CCTCTGTACAGTGTATGCAGTAGAT 59.699 44.000 21.99 0.00 0.00 1.98
53 54 4.640647 CCTCTGTACAGTGTATGCAGTAGA 59.359 45.833 21.99 9.14 0.00 2.59
54 55 4.734989 GCCTCTGTACAGTGTATGCAGTAG 60.735 50.000 21.99 8.14 0.00 2.57
55 56 3.130516 GCCTCTGTACAGTGTATGCAGTA 59.869 47.826 21.99 0.00 0.00 2.74
56 57 2.093973 GCCTCTGTACAGTGTATGCAGT 60.094 50.000 21.99 0.00 0.00 4.40
57 58 2.094026 TGCCTCTGTACAGTGTATGCAG 60.094 50.000 21.99 10.07 0.00 4.41
58 59 1.899142 TGCCTCTGTACAGTGTATGCA 59.101 47.619 21.99 19.47 0.00 3.96
59 60 2.271800 GTGCCTCTGTACAGTGTATGC 58.728 52.381 21.99 17.39 0.00 3.14
60 61 2.530177 CGTGCCTCTGTACAGTGTATG 58.470 52.381 21.99 14.71 0.00 2.39
61 62 1.476891 CCGTGCCTCTGTACAGTGTAT 59.523 52.381 21.99 0.00 0.00 2.29
62 63 0.885879 CCGTGCCTCTGTACAGTGTA 59.114 55.000 21.99 11.54 0.00 2.90
63 64 1.666011 CCGTGCCTCTGTACAGTGT 59.334 57.895 21.99 0.00 0.00 3.55
64 65 1.738099 GCCGTGCCTCTGTACAGTG 60.738 63.158 21.99 19.02 0.00 3.66
65 66 2.207229 TGCCGTGCCTCTGTACAGT 61.207 57.895 21.99 0.00 0.00 3.55
66 67 1.738099 GTGCCGTGCCTCTGTACAG 60.738 63.158 17.17 17.17 0.00 2.74
67 68 2.034048 TTGTGCCGTGCCTCTGTACA 62.034 55.000 0.00 0.00 0.00 2.90
68 69 0.673644 ATTGTGCCGTGCCTCTGTAC 60.674 55.000 0.00 0.00 0.00 2.90
69 70 0.391130 GATTGTGCCGTGCCTCTGTA 60.391 55.000 0.00 0.00 0.00 2.74
70 71 1.672356 GATTGTGCCGTGCCTCTGT 60.672 57.895 0.00 0.00 0.00 3.41
71 72 1.236616 TTGATTGTGCCGTGCCTCTG 61.237 55.000 0.00 0.00 0.00 3.35
72 73 1.073025 TTGATTGTGCCGTGCCTCT 59.927 52.632 0.00 0.00 0.00 3.69
73 74 1.210155 GTTGATTGTGCCGTGCCTC 59.790 57.895 0.00 0.00 0.00 4.70
74 75 0.036164 TAGTTGATTGTGCCGTGCCT 59.964 50.000 0.00 0.00 0.00 4.75
75 76 0.168128 GTAGTTGATTGTGCCGTGCC 59.832 55.000 0.00 0.00 0.00 5.01
76 77 1.156736 AGTAGTTGATTGTGCCGTGC 58.843 50.000 0.00 0.00 0.00 5.34
77 78 2.805671 TGAAGTAGTTGATTGTGCCGTG 59.194 45.455 0.00 0.00 0.00 4.94
78 79 3.120321 TGAAGTAGTTGATTGTGCCGT 57.880 42.857 0.00 0.00 0.00 5.68
79 80 4.685169 ATTGAAGTAGTTGATTGTGCCG 57.315 40.909 0.00 0.00 0.00 5.69
80 81 5.858581 GTGAATTGAAGTAGTTGATTGTGCC 59.141 40.000 0.00 0.00 0.00 5.01
81 82 6.672147 AGTGAATTGAAGTAGTTGATTGTGC 58.328 36.000 0.00 0.00 0.00 4.57
82 83 7.959651 GCTAGTGAATTGAAGTAGTTGATTGTG 59.040 37.037 0.00 0.00 0.00 3.33
83 84 7.661437 TGCTAGTGAATTGAAGTAGTTGATTGT 59.339 33.333 0.00 0.00 0.00 2.71
84 85 8.032952 TGCTAGTGAATTGAAGTAGTTGATTG 57.967 34.615 0.00 0.00 0.00 2.67
85 86 8.621532 TTGCTAGTGAATTGAAGTAGTTGATT 57.378 30.769 0.00 0.00 0.00 2.57
86 87 8.798859 ATTGCTAGTGAATTGAAGTAGTTGAT 57.201 30.769 0.00 0.00 0.00 2.57
87 88 9.371136 CTATTGCTAGTGAATTGAAGTAGTTGA 57.629 33.333 0.00 0.00 0.00 3.18
88 89 9.155975 ACTATTGCTAGTGAATTGAAGTAGTTG 57.844 33.333 0.00 0.00 36.81 3.16
89 90 9.726438 AACTATTGCTAGTGAATTGAAGTAGTT 57.274 29.630 0.00 0.00 38.23 2.24
90 91 9.726438 AAACTATTGCTAGTGAATTGAAGTAGT 57.274 29.630 0.00 0.00 38.23 2.73
92 93 9.162764 GGAAACTATTGCTAGTGAATTGAAGTA 57.837 33.333 0.00 0.00 38.23 2.24
93 94 7.885399 AGGAAACTATTGCTAGTGAATTGAAGT 59.115 33.333 0.00 0.00 40.61 3.01
94 95 8.273780 AGGAAACTATTGCTAGTGAATTGAAG 57.726 34.615 0.00 0.00 40.61 3.02
95 96 8.103305 AGAGGAAACTATTGCTAGTGAATTGAA 58.897 33.333 0.00 0.00 44.43 2.69
96 97 7.624549 AGAGGAAACTATTGCTAGTGAATTGA 58.375 34.615 0.00 0.00 44.43 2.57
97 98 7.856145 AGAGGAAACTATTGCTAGTGAATTG 57.144 36.000 0.00 0.00 44.43 2.32
98 99 8.763601 AGTAGAGGAAACTATTGCTAGTGAATT 58.236 33.333 0.00 0.00 44.43 2.17
99 100 8.312669 AGTAGAGGAAACTATTGCTAGTGAAT 57.687 34.615 0.00 0.00 44.43 2.57
100 101 7.719871 AGTAGAGGAAACTATTGCTAGTGAA 57.280 36.000 0.00 0.00 44.43 3.18
101 102 7.396339 TGAAGTAGAGGAAACTATTGCTAGTGA 59.604 37.037 0.00 0.00 44.43 3.41
102 103 7.548097 TGAAGTAGAGGAAACTATTGCTAGTG 58.452 38.462 0.00 0.00 44.43 2.74
103 104 7.719871 TGAAGTAGAGGAAACTATTGCTAGT 57.280 36.000 0.00 0.00 44.43 2.57
104 105 9.039870 CATTGAAGTAGAGGAAACTATTGCTAG 57.960 37.037 0.00 0.00 44.43 3.42
105 106 7.495934 GCATTGAAGTAGAGGAAACTATTGCTA 59.504 37.037 0.00 0.00 44.43 3.49
106 107 6.317391 GCATTGAAGTAGAGGAAACTATTGCT 59.683 38.462 0.00 0.00 44.43 3.91
107 108 6.094048 TGCATTGAAGTAGAGGAAACTATTGC 59.906 38.462 0.00 0.00 44.43 3.56
108 109 7.467623 GTGCATTGAAGTAGAGGAAACTATTG 58.532 38.462 0.00 0.00 44.43 1.90
109 110 6.313905 CGTGCATTGAAGTAGAGGAAACTATT 59.686 38.462 0.00 0.00 44.43 1.73
110 111 5.812642 CGTGCATTGAAGTAGAGGAAACTAT 59.187 40.000 0.00 0.00 44.43 2.12
111 112 5.168569 CGTGCATTGAAGTAGAGGAAACTA 58.831 41.667 0.00 0.00 44.43 2.24
113 114 3.125316 CCGTGCATTGAAGTAGAGGAAAC 59.875 47.826 0.00 0.00 0.00 2.78
114 115 3.334691 CCGTGCATTGAAGTAGAGGAAA 58.665 45.455 0.00 0.00 0.00 3.13
115 116 2.935238 GCCGTGCATTGAAGTAGAGGAA 60.935 50.000 0.00 0.00 0.00 3.36
116 117 1.405526 GCCGTGCATTGAAGTAGAGGA 60.406 52.381 0.00 0.00 0.00 3.71
117 118 1.009829 GCCGTGCATTGAAGTAGAGG 58.990 55.000 0.00 0.00 0.00 3.69
118 119 1.394917 GTGCCGTGCATTGAAGTAGAG 59.605 52.381 1.90 0.00 41.91 2.43
119 120 1.438651 GTGCCGTGCATTGAAGTAGA 58.561 50.000 1.90 0.00 41.91 2.59
120 121 0.095245 CGTGCCGTGCATTGAAGTAG 59.905 55.000 1.90 0.00 41.91 2.57
121 122 1.295357 CCGTGCCGTGCATTGAAGTA 61.295 55.000 1.90 0.00 41.91 2.24
122 123 2.616330 CCGTGCCGTGCATTGAAGT 61.616 57.895 1.90 0.00 41.91 3.01
123 124 2.176546 CCGTGCCGTGCATTGAAG 59.823 61.111 1.90 0.00 41.91 3.02
124 125 4.036804 GCCGTGCCGTGCATTGAA 62.037 61.111 1.90 0.00 41.91 2.69
130 131 4.341502 AATTGTGCCGTGCCGTGC 62.342 61.111 0.00 0.00 0.00 5.34
131 132 2.126888 GAATTGTGCCGTGCCGTG 60.127 61.111 0.00 0.00 0.00 4.94
132 133 1.523154 AATGAATTGTGCCGTGCCGT 61.523 50.000 0.00 0.00 0.00 5.68
133 134 0.449786 TAATGAATTGTGCCGTGCCG 59.550 50.000 0.00 0.00 0.00 5.69
134 135 2.529151 CTTAATGAATTGTGCCGTGCC 58.471 47.619 0.00 0.00 0.00 5.01
135 136 2.529151 CCTTAATGAATTGTGCCGTGC 58.471 47.619 0.00 0.00 0.00 5.34
136 137 2.752354 TCCCTTAATGAATTGTGCCGTG 59.248 45.455 0.00 0.00 0.00 4.94
137 138 3.080300 TCCCTTAATGAATTGTGCCGT 57.920 42.857 0.00 0.00 0.00 5.68
138 139 3.694072 TCTTCCCTTAATGAATTGTGCCG 59.306 43.478 0.00 0.00 0.00 5.69
139 140 5.452356 CCATCTTCCCTTAATGAATTGTGCC 60.452 44.000 0.00 0.00 0.00 5.01
140 141 5.360714 TCCATCTTCCCTTAATGAATTGTGC 59.639 40.000 0.00 0.00 0.00 4.57
141 142 7.431249 CATCCATCTTCCCTTAATGAATTGTG 58.569 38.462 0.00 0.00 0.00 3.33
142 143 6.041296 GCATCCATCTTCCCTTAATGAATTGT 59.959 38.462 0.00 0.00 0.00 2.71
143 144 6.267014 AGCATCCATCTTCCCTTAATGAATTG 59.733 38.462 0.00 0.00 0.00 2.32
144 145 6.379579 AGCATCCATCTTCCCTTAATGAATT 58.620 36.000 0.00 0.00 0.00 2.17
145 146 5.961897 AGCATCCATCTTCCCTTAATGAAT 58.038 37.500 0.00 0.00 0.00 2.57
146 147 5.393068 AGCATCCATCTTCCCTTAATGAA 57.607 39.130 0.00 0.00 0.00 2.57
147 148 6.299141 GTTAGCATCCATCTTCCCTTAATGA 58.701 40.000 0.00 0.00 0.00 2.57
148 149 5.474876 GGTTAGCATCCATCTTCCCTTAATG 59.525 44.000 0.00 0.00 0.00 1.90
156 157 4.278669 TCGTAGAGGTTAGCATCCATCTTC 59.721 45.833 0.00 0.00 0.00 2.87
206 207 1.526575 ATGGCGGGCTTCTTGTTGTG 61.527 55.000 2.38 0.00 0.00 3.33
207 208 1.228552 ATGGCGGGCTTCTTGTTGT 60.229 52.632 2.38 0.00 0.00 3.32
208 209 1.213537 CATGGCGGGCTTCTTGTTG 59.786 57.895 2.38 0.00 0.00 3.33
209 210 0.323725 ATCATGGCGGGCTTCTTGTT 60.324 50.000 2.38 0.00 0.00 2.83
210 211 1.033746 CATCATGGCGGGCTTCTTGT 61.034 55.000 2.38 0.00 0.00 3.16
211 212 0.749091 TCATCATGGCGGGCTTCTTG 60.749 55.000 2.38 0.00 0.00 3.02
212 213 0.034186 TTCATCATGGCGGGCTTCTT 60.034 50.000 2.38 0.00 0.00 2.52
213 214 0.749454 GTTCATCATGGCGGGCTTCT 60.749 55.000 2.38 0.00 0.00 2.85
214 215 1.031571 TGTTCATCATGGCGGGCTTC 61.032 55.000 2.38 0.00 0.00 3.86
215 216 0.611618 TTGTTCATCATGGCGGGCTT 60.612 50.000 2.38 0.00 0.00 4.35
216 217 0.396139 ATTGTTCATCATGGCGGGCT 60.396 50.000 2.38 0.00 0.00 5.19
217 218 0.249155 CATTGTTCATCATGGCGGGC 60.249 55.000 0.00 0.00 0.00 6.13
218 219 1.391577 TCATTGTTCATCATGGCGGG 58.608 50.000 0.00 0.00 0.00 6.13
219 220 2.287970 CCATCATTGTTCATCATGGCGG 60.288 50.000 0.00 0.00 0.00 6.13
232 233 4.571984 TGTAATTCTCTCGTGCCATCATTG 59.428 41.667 0.00 0.00 0.00 2.82
233 234 4.769688 TGTAATTCTCTCGTGCCATCATT 58.230 39.130 0.00 0.00 0.00 2.57
240 241 3.521560 TGGACATGTAATTCTCTCGTGC 58.478 45.455 0.00 0.00 0.00 5.34
254 255 4.512571 TCATCATCGTGCTAATTGGACATG 59.487 41.667 0.00 0.00 36.78 3.21
259 260 6.732531 ATACATCATCATCGTGCTAATTGG 57.267 37.500 0.00 0.00 0.00 3.16
265 266 3.059393 CGCAAATACATCATCATCGTGCT 60.059 43.478 0.00 0.00 0.00 4.40
266 267 3.220773 CGCAAATACATCATCATCGTGC 58.779 45.455 0.00 0.00 0.00 5.34
267 268 3.802423 CCGCAAATACATCATCATCGTG 58.198 45.455 0.00 0.00 0.00 4.35
268 269 2.224079 GCCGCAAATACATCATCATCGT 59.776 45.455 0.00 0.00 0.00 3.73
269 270 2.722706 CGCCGCAAATACATCATCATCG 60.723 50.000 0.00 0.00 0.00 3.84
271 272 1.069022 GCGCCGCAAATACATCATCAT 60.069 47.619 3.15 0.00 0.00 2.45
272 273 0.307453 GCGCCGCAAATACATCATCA 59.693 50.000 3.15 0.00 0.00 3.07
273 274 0.307453 TGCGCCGCAAATACATCATC 59.693 50.000 10.46 0.00 34.76 2.92
284 290 2.511373 CTAGGTCAATGCGCCGCA 60.511 61.111 16.69 16.69 44.86 5.69
347 353 3.633235 CGATGGACGACTTATTGGAGAG 58.367 50.000 0.00 0.00 45.77 3.20
407 434 1.135083 CGGCGTAGAGTTGGAGATGTT 60.135 52.381 0.00 0.00 0.00 2.71
439 466 2.126031 GCTCAGGTTCGTCGGGAC 60.126 66.667 0.00 0.00 0.00 4.46
475 502 6.545298 TGCAATGTCAAACCATGCATATAGTA 59.455 34.615 0.00 0.00 29.84 1.82
476 503 5.360429 TGCAATGTCAAACCATGCATATAGT 59.640 36.000 0.00 0.00 29.84 2.12
519 546 8.690680 AGCAAAATTGAAAAGTACGTAAACAA 57.309 26.923 0.00 0.58 0.00 2.83
521 548 8.898792 CCTAGCAAAATTGAAAAGTACGTAAAC 58.101 33.333 0.00 0.00 0.00 2.01
522 549 7.592164 GCCTAGCAAAATTGAAAAGTACGTAAA 59.408 33.333 0.00 0.00 0.00 2.01
525 552 5.009210 TGCCTAGCAAAATTGAAAAGTACGT 59.991 36.000 0.00 0.00 34.76 3.57
526 553 5.457140 TGCCTAGCAAAATTGAAAAGTACG 58.543 37.500 0.00 0.00 34.76 3.67
538 650 8.518430 TTGTCATCTTATAATGCCTAGCAAAA 57.482 30.769 0.00 0.00 43.62 2.44
573 685 5.449304 CCGGCTTAAAGAAGTTACTTGTTG 58.551 41.667 8.25 0.00 34.90 3.33
683 796 5.643348 TGATGTTTGCAAAGTCTGTATCGAT 59.357 36.000 13.26 2.16 0.00 3.59
716 831 8.744652 TGTTTTGTATATATGAACCAGGGTTTG 58.255 33.333 4.99 0.00 38.60 2.93
728 843 7.436970 TCTGGCTACGTGTGTTTTGTATATATG 59.563 37.037 0.00 0.00 0.00 1.78
729 844 7.494211 TCTGGCTACGTGTGTTTTGTATATAT 58.506 34.615 0.00 0.00 0.00 0.86
730 845 6.865411 TCTGGCTACGTGTGTTTTGTATATA 58.135 36.000 0.00 0.00 0.00 0.86
731 846 5.726397 TCTGGCTACGTGTGTTTTGTATAT 58.274 37.500 0.00 0.00 0.00 0.86
732 847 5.136816 TCTGGCTACGTGTGTTTTGTATA 57.863 39.130 0.00 0.00 0.00 1.47
733 848 3.997762 TCTGGCTACGTGTGTTTTGTAT 58.002 40.909 0.00 0.00 0.00 2.29
734 849 3.455990 TCTGGCTACGTGTGTTTTGTA 57.544 42.857 0.00 0.00 0.00 2.41
735 850 2.319136 TCTGGCTACGTGTGTTTTGT 57.681 45.000 0.00 0.00 0.00 2.83
736 851 3.896648 ATTCTGGCTACGTGTGTTTTG 57.103 42.857 0.00 0.00 0.00 2.44
737 852 3.749609 GGTATTCTGGCTACGTGTGTTTT 59.250 43.478 0.00 0.00 0.00 2.43
738 853 3.332034 GGTATTCTGGCTACGTGTGTTT 58.668 45.455 0.00 0.00 0.00 2.83
739 854 2.354403 GGGTATTCTGGCTACGTGTGTT 60.354 50.000 0.00 0.00 0.00 3.32
740 855 1.206371 GGGTATTCTGGCTACGTGTGT 59.794 52.381 0.00 0.00 0.00 3.72
741 856 1.480954 AGGGTATTCTGGCTACGTGTG 59.519 52.381 0.00 0.00 0.00 3.82
742 857 1.861982 AGGGTATTCTGGCTACGTGT 58.138 50.000 0.00 0.00 0.00 4.49
743 858 2.981859 AAGGGTATTCTGGCTACGTG 57.018 50.000 0.00 0.00 0.00 4.49
744 859 3.994931 AAAAGGGTATTCTGGCTACGT 57.005 42.857 0.00 0.00 0.00 3.57
745 860 3.181500 GCAAAAAGGGTATTCTGGCTACG 60.181 47.826 0.00 0.00 0.00 3.51
746 861 3.761752 TGCAAAAAGGGTATTCTGGCTAC 59.238 43.478 0.00 0.00 0.00 3.58
751 866 6.222389 TGATGTTTGCAAAAAGGGTATTCTG 58.778 36.000 14.67 0.00 0.00 3.02
850 979 1.617850 AGGCATTTGCATCAACGGAAA 59.382 42.857 4.74 0.00 44.36 3.13
881 1206 6.386050 TGGACATGATGGAGAGATATATGCAT 59.614 38.462 3.79 3.79 0.00 3.96
891 1216 7.179160 TGGTAAGTATATGGACATGATGGAGAG 59.821 40.741 0.00 0.00 0.00 3.20
926 1251 4.466370 TGTCAGAGGGTTTACAGAATCGAT 59.534 41.667 0.00 0.00 0.00 3.59
927 1252 3.830178 TGTCAGAGGGTTTACAGAATCGA 59.170 43.478 0.00 0.00 0.00 3.59
1019 1368 4.764823 CAGGTATGGGCTTGTTAACTGAAA 59.235 41.667 7.22 0.00 33.41 2.69
1083 1432 5.209818 ACTTAATCACCTCGAAGTTGTGA 57.790 39.130 8.57 8.57 41.41 3.58
1132 1481 1.838943 GCTCGAGCTAACGAACTTACG 59.161 52.381 29.88 0.00 41.67 3.18
1205 1556 0.836400 AGCTTTGTCTTCCTCCCCGA 60.836 55.000 0.00 0.00 0.00 5.14
1263 1614 4.074970 ACTTGACCTTCACATCCATTGTC 58.925 43.478 0.00 0.00 36.00 3.18
1335 1689 9.036671 GGCTTAAATTTAGCTGTTGTTGTTTTA 57.963 29.630 14.91 0.00 38.67 1.52
1367 1721 1.507140 CCAGCCCCAACTATCACCTA 58.493 55.000 0.00 0.00 0.00 3.08
1368 1722 1.281925 CCCAGCCCCAACTATCACCT 61.282 60.000 0.00 0.00 0.00 4.00
1369 1723 1.227383 CCCAGCCCCAACTATCACC 59.773 63.158 0.00 0.00 0.00 4.02
1423 1777 0.895100 GTGAAGCAGTCATGGGCCAA 60.895 55.000 11.89 0.00 38.90 4.52
1426 1780 1.133790 GATTGTGAAGCAGTCATGGGC 59.866 52.381 0.00 0.00 38.90 5.36
1626 1986 3.519579 CTTGAAGACTGATGATCGTGCT 58.480 45.455 0.00 0.00 0.00 4.40
1718 2078 0.390472 GTGGAGAAGTGCCTCGAAGG 60.390 60.000 0.00 0.00 38.80 3.46
1734 2094 6.425114 GCAGGTTATCTGTGTATATGAAGTGG 59.575 42.308 0.00 0.00 45.08 4.00
1771 2131 6.311690 TGCAATGCTACATTTTGATCAACATG 59.688 34.615 25.88 25.88 35.30 3.21
1788 2148 0.032952 CCAACAAGTGCTGCAATGCT 59.967 50.000 2.77 0.00 0.00 3.79
1815 2175 1.341531 CTGTCCAGTCCATACCGATCC 59.658 57.143 0.00 0.00 0.00 3.36
1842 2202 5.557893 GCATAGCTTCTCTTCACAAATAGCG 60.558 44.000 0.00 0.00 32.68 4.26
2300 4512 4.512571 CAGGAAAATTCACTGCCAAAAAGG 59.487 41.667 0.00 0.00 41.84 3.11
2301 4513 5.358922 TCAGGAAAATTCACTGCCAAAAAG 58.641 37.500 0.00 0.00 32.42 2.27
2324 4536 3.395941 AGGTTCAAGAGGAATGTGGTCTT 59.604 43.478 0.00 0.00 37.93 3.01
2330 4542 5.561679 GAAGGTAAGGTTCAAGAGGAATGT 58.438 41.667 0.00 0.00 37.93 2.71
2331 4543 4.631813 CGAAGGTAAGGTTCAAGAGGAATG 59.368 45.833 0.00 0.00 37.93 2.67
2333 4545 3.644738 ACGAAGGTAAGGTTCAAGAGGAA 59.355 43.478 0.00 0.00 0.00 3.36
2334 4546 3.006537 CACGAAGGTAAGGTTCAAGAGGA 59.993 47.826 0.00 0.00 0.00 3.71
2335 4547 3.326747 CACGAAGGTAAGGTTCAAGAGG 58.673 50.000 0.00 0.00 0.00 3.69
2336 4548 3.006537 TCCACGAAGGTAAGGTTCAAGAG 59.993 47.826 0.00 0.00 39.02 2.85
2337 4549 2.967201 TCCACGAAGGTAAGGTTCAAGA 59.033 45.455 0.00 0.00 39.02 3.02
2338 4550 3.006537 TCTCCACGAAGGTAAGGTTCAAG 59.993 47.826 0.00 0.00 39.02 3.02
2339 4551 2.967201 TCTCCACGAAGGTAAGGTTCAA 59.033 45.455 0.00 0.00 39.02 2.69
2340 4552 2.600790 TCTCCACGAAGGTAAGGTTCA 58.399 47.619 0.00 0.00 39.02 3.18
2341 4553 3.006644 AGTTCTCCACGAAGGTAAGGTTC 59.993 47.826 0.00 0.00 39.02 3.62
2342 4554 2.970640 AGTTCTCCACGAAGGTAAGGTT 59.029 45.455 0.00 0.00 39.02 3.50
2343 4555 2.606378 AGTTCTCCACGAAGGTAAGGT 58.394 47.619 0.00 0.00 39.02 3.50
2344 4556 3.130693 CCTAGTTCTCCACGAAGGTAAGG 59.869 52.174 0.00 0.00 39.02 2.69
2345 4557 3.762823 ACCTAGTTCTCCACGAAGGTAAG 59.237 47.826 0.00 0.00 42.07 2.34
2346 4558 3.771216 ACCTAGTTCTCCACGAAGGTAA 58.229 45.455 0.00 0.00 42.07 2.85
2347 4559 3.446442 ACCTAGTTCTCCACGAAGGTA 57.554 47.619 0.00 0.00 42.07 3.08
2348 4560 2.305858 ACCTAGTTCTCCACGAAGGT 57.694 50.000 0.00 0.00 40.19 3.50
2349 4561 3.679824 AAACCTAGTTCTCCACGAAGG 57.320 47.619 0.00 0.00 38.68 3.46
2350 4562 4.220163 AGGTAAACCTAGTTCTCCACGAAG 59.780 45.833 0.00 0.00 46.48 3.79
2351 4563 4.154942 AGGTAAACCTAGTTCTCCACGAA 58.845 43.478 0.00 0.00 46.48 3.85
2352 4564 3.771216 AGGTAAACCTAGTTCTCCACGA 58.229 45.455 0.00 0.00 46.48 4.35
2372 4584 9.426534 TCCCAGTATACATCCATATCAGAATAG 57.573 37.037 5.50 0.00 0.00 1.73
2388 4600 4.689612 TCAAAGCTCCATCCCAGTATAC 57.310 45.455 0.00 0.00 0.00 1.47
2398 4610 4.043435 AGAAGGTAAGGTTCAAAGCTCCAT 59.957 41.667 0.00 0.00 35.34 3.41
2406 4618 4.532834 ACTGCAAAGAAGGTAAGGTTCAA 58.467 39.130 0.00 0.00 0.00 2.69
2413 4625 1.271163 CCGGGACTGCAAAGAAGGTAA 60.271 52.381 0.00 0.00 0.00 2.85
2414 4626 0.323629 CCGGGACTGCAAAGAAGGTA 59.676 55.000 0.00 0.00 0.00 3.08
2426 4638 2.044551 GAGTACGGGACCGGGACT 60.045 66.667 16.54 16.54 44.69 3.85
2429 4641 3.970746 AAGGGAGTACGGGACCGGG 62.971 68.421 15.92 0.00 44.69 5.73
2430 4642 2.363406 AAGGGAGTACGGGACCGG 60.363 66.667 15.92 0.00 44.69 5.28
2431 4643 2.421399 GGAAGGGAGTACGGGACCG 61.421 68.421 9.56 9.56 46.03 4.79
2432 4644 0.906282 TTGGAAGGGAGTACGGGACC 60.906 60.000 0.00 0.00 0.00 4.46
2433 4645 0.535797 CTTGGAAGGGAGTACGGGAC 59.464 60.000 0.00 0.00 0.00 4.46
2434 4646 0.115745 ACTTGGAAGGGAGTACGGGA 59.884 55.000 0.00 0.00 0.00 5.14
2435 4647 0.535797 GACTTGGAAGGGAGTACGGG 59.464 60.000 0.00 0.00 0.00 5.28
2451 4663 6.319048 AGTTCCACATGAAATATCTGGACT 57.681 37.500 0.00 0.00 33.94 3.85
2452 4664 5.529060 GGAGTTCCACATGAAATATCTGGAC 59.471 44.000 0.00 0.00 33.94 4.02
2463 4675 2.549992 CGGAAACAGGAGTTCCACATGA 60.550 50.000 0.00 0.00 36.84 3.07
2491 4783 8.850156 GTCATATCCCAGCAATAATAACTGTTT 58.150 33.333 0.00 0.00 0.00 2.83
2497 4789 9.066892 GTTCTTGTCATATCCCAGCAATAATAA 57.933 33.333 0.00 0.00 0.00 1.40
2498 4790 8.217111 TGTTCTTGTCATATCCCAGCAATAATA 58.783 33.333 0.00 0.00 0.00 0.98
2514 4836 3.527533 ACGCTAACTGTTGTTCTTGTCA 58.472 40.909 2.69 0.00 37.59 3.58
2516 4838 3.793559 AGACGCTAACTGTTGTTCTTGT 58.206 40.909 2.69 0.00 37.59 3.16
2517 4839 6.467723 AATAGACGCTAACTGTTGTTCTTG 57.532 37.500 2.69 0.00 37.59 3.02
2526 4848 4.424626 TGAGCTGAAATAGACGCTAACTG 58.575 43.478 0.00 0.00 31.96 3.16
2533 4855 7.095857 CCTTATTTAGCTGAGCTGAAATAGACG 60.096 40.741 18.79 13.01 37.66 4.18
2557 4882 0.405585 ATTTAGCTGTGGGTGTGCCT 59.594 50.000 0.00 0.00 34.45 4.75
2560 4885 4.201950 GCTTCATATTTAGCTGTGGGTGTG 60.202 45.833 0.00 0.00 34.57 3.82
2564 4889 2.031682 GCGCTTCATATTTAGCTGTGGG 60.032 50.000 0.00 0.00 35.25 4.61
2568 4893 3.969117 TTGGCGCTTCATATTTAGCTG 57.031 42.857 7.64 0.94 35.25 4.24
2571 4896 3.568538 GCCATTGGCGCTTCATATTTAG 58.431 45.455 12.82 0.00 39.62 1.85
2585 4910 4.401519 AGTTCTGAGATTGAATGCCATTGG 59.598 41.667 0.00 0.00 0.00 3.16
2586 4911 5.124936 TCAGTTCTGAGATTGAATGCCATTG 59.875 40.000 0.00 0.00 0.00 2.82
2608 4986 6.957920 TCTTTGTTTTTGGATCAGTGATCA 57.042 33.333 29.56 15.86 40.50 2.92
2637 5170 9.056005 GCATTAAACTACTGAATATCCATGACA 57.944 33.333 0.00 0.00 0.00 3.58
2648 5187 7.695480 TTTATGCCTGCATTAAACTACTGAA 57.305 32.000 10.27 0.00 37.82 3.02
2716 5270 2.039084 AGTGGAAAGAGTCGGCAAGAAT 59.961 45.455 0.00 0.00 0.00 2.40
2723 5277 4.023963 GGAAAAAGAAGTGGAAAGAGTCGG 60.024 45.833 0.00 0.00 0.00 4.79
2725 5279 6.127730 TGTTGGAAAAAGAAGTGGAAAGAGTC 60.128 38.462 0.00 0.00 0.00 3.36
2736 5290 4.976116 CCGCTAAGTTGTTGGAAAAAGAAG 59.024 41.667 0.00 0.00 0.00 2.85
2746 5300 3.252215 TGGATGAAACCGCTAAGTTGTTG 59.748 43.478 0.00 0.00 0.00 3.33
2760 5314 2.528673 TGCACATGGGATGGATGAAA 57.471 45.000 0.00 0.00 33.60 2.69
2788 5342 6.951198 AGGTAATTTACACCACCATGATTCAA 59.049 34.615 8.73 0.00 38.62 2.69
2803 5357 4.703093 TGTAAGCCTGGCAAGGTAATTTAC 59.297 41.667 22.65 16.93 46.43 2.01
2831 5385 8.693542 AATGCTGCAGTTTATATGAAAGAAAC 57.306 30.769 16.64 0.00 34.05 2.78
2836 5390 7.408756 AGGAAATGCTGCAGTTTATATGAAA 57.591 32.000 16.91 0.00 0.00 2.69
2842 5396 3.700538 TGGAGGAAATGCTGCAGTTTAT 58.299 40.909 16.91 8.47 0.00 1.40
2843 5397 3.153369 TGGAGGAAATGCTGCAGTTTA 57.847 42.857 16.91 2.57 0.00 2.01
2844 5398 1.999648 TGGAGGAAATGCTGCAGTTT 58.000 45.000 16.91 8.88 0.00 2.66
2845 5399 2.226962 ATGGAGGAAATGCTGCAGTT 57.773 45.000 15.79 15.79 0.00 3.16
2849 5403 5.663456 TCAAAATAATGGAGGAAATGCTGC 58.337 37.500 0.00 0.00 0.00 5.25
2850 5404 9.635520 GATATCAAAATAATGGAGGAAATGCTG 57.364 33.333 0.00 0.00 0.00 4.41
2889 5443 0.761187 ACTGTCCTGTCAGTGCATGT 59.239 50.000 0.00 0.00 45.40 3.21
2890 5444 1.534163 CAACTGTCCTGTCAGTGCATG 59.466 52.381 0.00 0.00 46.25 4.06
2900 5454 5.520376 AACTCCATTTTTCAACTGTCCTG 57.480 39.130 0.00 0.00 0.00 3.86
2902 5456 6.149129 AGAAACTCCATTTTTCAACTGTCC 57.851 37.500 0.00 0.00 35.72 4.02
2903 5457 8.621286 TCTTAGAAACTCCATTTTTCAACTGTC 58.379 33.333 0.00 0.00 35.72 3.51
2936 5490 1.888215 TCGACAGACGTAGAACACCT 58.112 50.000 0.00 0.00 43.13 4.00
2945 5499 5.571784 TCCTGTAATTATTCGACAGACGT 57.428 39.130 8.87 0.00 42.65 4.34
2962 5516 1.207329 GCTCCTTGATACGGTTCCTGT 59.793 52.381 0.00 0.00 0.00 4.00
2971 5525 2.426842 AAAGCTGGGCTCCTTGATAC 57.573 50.000 0.00 0.00 38.25 2.24
3018 5572 0.856982 TCAAACCCAACCCCATCACT 59.143 50.000 0.00 0.00 0.00 3.41
3038 5592 2.025037 AGGCTGACATAAATTCAGGGCA 60.025 45.455 1.76 0.00 40.84 5.36
3050 5604 4.716784 TGGAGTACTATTTCAGGCTGACAT 59.283 41.667 18.55 18.91 0.00 3.06
3051 5605 4.093743 TGGAGTACTATTTCAGGCTGACA 58.906 43.478 18.55 11.96 0.00 3.58
3052 5606 4.737855 TGGAGTACTATTTCAGGCTGAC 57.262 45.455 18.55 4.27 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.