Multiple sequence alignment - TraesCS5A01G554800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G554800 chr5A 100.000 3680 0 0 1 3680 706547939 706544260 0.000000e+00 6796.0
1 TraesCS5A01G554800 chr5A 83.432 507 47 18 273 749 487792204 487792703 1.570000e-118 436.0
2 TraesCS5A01G554800 chrUn 86.834 1990 157 40 1 1930 30033269 30031325 0.000000e+00 2126.0
3 TraesCS5A01G554800 chrUn 87.020 1718 128 24 1977 3680 30031326 30029690 0.000000e+00 1849.0
4 TraesCS5A01G554800 chrUn 84.000 125 20 0 1539 1663 327034627 327034503 1.790000e-23 121.0
5 TraesCS5A01G554800 chr4B 87.923 1714 110 25 1977 3680 667609183 667610809 0.000000e+00 1929.0
6 TraesCS5A01G554800 chr4B 88.786 1186 116 12 751 1930 667608010 667609184 0.000000e+00 1437.0
7 TraesCS5A01G554800 chr4B 79.878 492 59 19 273 732 420446571 420447054 1.270000e-84 324.0
8 TraesCS5A01G554800 chr4B 80.041 486 54 19 306 750 232111749 232111266 1.650000e-83 320.0
9 TraesCS5A01G554800 chr4B 84.729 203 18 8 53 246 667607792 667607990 1.350000e-44 191.0
10 TraesCS5A01G554800 chr3A 83.534 498 53 14 273 749 600924250 600923761 4.360000e-119 438.0
11 TraesCS5A01G554800 chr7B 83.227 471 42 14 306 750 516793674 516793215 7.400000e-107 398.0
12 TraesCS5A01G554800 chr7B 100.000 28 0 0 2255 2282 158256676 158256703 7.000000e-03 52.8
13 TraesCS5A01G554800 chr6A 82.008 478 51 17 306 750 486955271 486954796 1.250000e-99 374.0
14 TraesCS5A01G554800 chr6A 80.000 485 54 19 306 749 181566909 181567391 5.930000e-83 318.0
15 TraesCS5A01G554800 chr1B 81.410 468 56 11 305 749 568969242 568969701 1.630000e-93 353.0
16 TraesCS5A01G554800 chr1B 80.851 470 58 15 306 750 264853167 264852705 1.270000e-89 340.0
17 TraesCS5A01G554800 chr1B 79.466 487 58 18 306 752 668427728 668428212 1.280000e-79 307.0
18 TraesCS5A01G554800 chr1B 84.000 125 20 0 1539 1663 652291525 652291401 1.790000e-23 121.0
19 TraesCS5A01G554800 chr6D 80.677 502 56 17 273 747 354904901 354905388 5.850000e-93 351.0
20 TraesCS5A01G554800 chr2D 82.135 431 55 12 273 684 650056419 650056846 2.100000e-92 350.0
21 TraesCS5A01G554800 chr2D 82.333 300 31 9 356 638 307028688 307028394 1.320000e-59 241.0
22 TraesCS5A01G554800 chr2D 87.500 96 12 0 1559 1654 14349372 14349467 1.080000e-20 111.0
23 TraesCS5A01G554800 chr2D 85.714 105 15 0 1559 1663 573971095 573970991 1.080000e-20 111.0
24 TraesCS5A01G554800 chr2A 80.498 482 54 19 306 749 673006254 673006733 2.120000e-87 333.0
25 TraesCS5A01G554800 chr2A 83.667 300 28 8 356 638 387647165 387646870 2.820000e-66 263.0
26 TraesCS5A01G554800 chr2A 85.714 105 15 0 1559 1663 712555070 712554966 1.080000e-20 111.0
27 TraesCS5A01G554800 chr1A 80.638 470 52 15 305 749 517102917 517103372 9.850000e-86 327.0
28 TraesCS5A01G554800 chr1A 87.629 97 12 0 1567 1663 563413716 563413620 3.000000e-21 113.0
29 TraesCS5A01G554800 chr3D 79.794 485 54 20 306 749 94497220 94496739 2.760000e-81 313.0
30 TraesCS5A01G554800 chr2B 83.333 300 32 7 356 638 360971292 360971590 1.010000e-65 261.0
31 TraesCS5A01G554800 chr2B 85.714 105 15 0 1559 1663 689872278 689872174 1.080000e-20 111.0
32 TraesCS5A01G554800 chr4A 79.500 200 31 5 273 462 433723596 433723397 2.310000e-27 134.0
33 TraesCS5A01G554800 chr5D 78.027 223 31 11 273 490 381035299 381035090 1.390000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G554800 chr5A 706544260 706547939 3679 True 6796.000000 6796 100.000 1 3680 1 chr5A.!!$R1 3679
1 TraesCS5A01G554800 chrUn 30029690 30033269 3579 True 1987.500000 2126 86.927 1 3680 2 chrUn.!!$R2 3679
2 TraesCS5A01G554800 chr4B 667607792 667610809 3017 False 1185.666667 1929 87.146 53 3680 3 chr4B.!!$F2 3627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 321 0.041926 GCGTTTTTAAGCGACGGTGT 60.042 50.0 0.0 0.0 37.28 4.16 F
1340 1406 0.117340 AAGTACCTGGAGAGGGCAGT 59.883 55.0 0.0 0.0 44.84 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1604 0.105224 TCTTTCTGCCGGTTTCACGA 59.895 50.0 1.90 0.0 35.47 4.35 R
2857 2931 0.044092 TGGGAATCCCTGCTAGACCA 59.956 55.0 20.55 0.0 45.70 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 8.038944 ACTAGACTAAACAAACACTCTGACAAA 58.961 33.333 0.00 0.00 0.00 2.83
55 56 7.308782 AGACTAAACAAACACTCTGACAAAG 57.691 36.000 0.00 0.00 0.00 2.77
56 57 6.879458 AGACTAAACAAACACTCTGACAAAGT 59.121 34.615 0.00 0.00 0.00 2.66
57 58 8.038944 AGACTAAACAAACACTCTGACAAAGTA 58.961 33.333 0.00 0.00 0.00 2.24
61 62 6.663944 ACAAACACTCTGACAAAGTAGTTC 57.336 37.500 0.00 0.00 0.00 3.01
69 70 6.550108 ACTCTGACAAAGTAGTTCAACCTAGA 59.450 38.462 0.00 0.00 0.00 2.43
73 74 7.506114 TGACAAAGTAGTTCAACCTAGAATGT 58.494 34.615 0.00 0.00 0.00 2.71
79 80 5.746990 AGTTCAACCTAGAATGTGCTACT 57.253 39.130 0.00 0.00 0.00 2.57
98 103 1.953686 CTAGCTCCTCTAGTCACCAGC 59.046 57.143 0.00 0.00 39.91 4.85
155 168 1.469940 CCGTCTCAAATCTCCACTCCG 60.470 57.143 0.00 0.00 0.00 4.63
156 169 1.469940 CGTCTCAAATCTCCACTCCGG 60.470 57.143 0.00 0.00 0.00 5.14
189 202 1.614850 GGGCGTCCTCCAAACCAATTA 60.615 52.381 0.00 0.00 0.00 1.40
210 223 2.464459 CGATTTCGCTCCCCTGCAC 61.464 63.158 0.00 0.00 0.00 4.57
212 225 3.254024 ATTTCGCTCCCCTGCACGT 62.254 57.895 0.00 0.00 0.00 4.49
243 260 4.369182 CGGTATGTTGGACTACTTCATCC 58.631 47.826 0.00 0.00 35.37 3.51
246 263 6.183360 CGGTATGTTGGACTACTTCATCCTAA 60.183 42.308 0.00 0.00 35.86 2.69
249 266 9.046296 GTATGTTGGACTACTTCATCCTAAATG 57.954 37.037 0.00 0.00 35.86 2.32
283 300 7.913297 GCAGTTAATTGTTGTAGTGTTCAAGAA 59.087 33.333 0.00 0.00 33.81 2.52
288 305 3.936453 TGTTGTAGTGTTCAAGAAAGCGT 59.064 39.130 0.00 0.00 0.00 5.07
302 319 2.608640 AGCGTTTTTAAGCGACGGT 58.391 47.368 2.86 0.00 41.92 4.83
304 321 0.041926 GCGTTTTTAAGCGACGGTGT 60.042 50.000 0.00 0.00 37.28 4.16
314 331 2.778679 GACGGTGTTGAGCGATGC 59.221 61.111 0.01 0.00 46.19 3.91
340 357 2.287608 ACGCTTTGCTTTTGTCCTAAGC 60.288 45.455 0.00 0.00 46.33 3.09
352 369 4.811969 TGTCCTAAGCGGTTGATTAAGA 57.188 40.909 10.73 0.00 0.00 2.10
353 370 4.501071 TGTCCTAAGCGGTTGATTAAGAC 58.499 43.478 10.73 7.95 37.73 3.01
413 432 0.664761 GTTCTGCTTGTCTGCTTGCA 59.335 50.000 0.00 0.00 0.00 4.08
421 440 3.550639 GCTTGTCTGCTTGCACAATAACA 60.551 43.478 0.00 0.00 32.13 2.41
476 519 2.045524 TCAGGAGCAAAATTTTGGCCA 58.954 42.857 27.60 0.00 38.57 5.36
478 521 1.147473 GGAGCAAAATTTTGGCCACG 58.853 50.000 27.60 6.23 38.57 4.94
492 535 2.628178 TGGCCACGTGATCTCTATTAGG 59.372 50.000 19.30 0.00 0.00 2.69
494 537 3.069729 GGCCACGTGATCTCTATTAGGTT 59.930 47.826 19.30 0.00 0.00 3.50
499 542 7.085116 CCACGTGATCTCTATTAGGTTATGTC 58.915 42.308 19.30 0.00 0.00 3.06
557 616 4.818546 GCTTGCTATGTGAACCTGATGTAT 59.181 41.667 0.00 0.00 0.00 2.29
561 620 7.066307 TGCTATGTGAACCTGATGTATATGT 57.934 36.000 0.00 0.00 0.00 2.29
577 636 6.280643 TGTATATGTGCTATGGTGTGAACTC 58.719 40.000 0.00 0.00 0.00 3.01
583 642 6.237901 TGTGCTATGGTGTGAACTCTATTTT 58.762 36.000 0.00 0.00 0.00 1.82
584 643 7.390823 TGTGCTATGGTGTGAACTCTATTTTA 58.609 34.615 0.00 0.00 0.00 1.52
585 644 7.880713 TGTGCTATGGTGTGAACTCTATTTTAA 59.119 33.333 0.00 0.00 0.00 1.52
592 651 9.290988 TGGTGTGAACTCTATTTTAAATGCTAA 57.709 29.630 0.00 0.00 0.00 3.09
618 677 2.512692 TAGCCATGTGCCATGTTTCT 57.487 45.000 12.36 9.28 42.71 2.52
622 681 3.382546 AGCCATGTGCCATGTTTCTTATC 59.617 43.478 12.36 0.00 42.71 1.75
626 685 6.038356 CCATGTGCCATGTTTCTTATCTTTC 58.962 40.000 12.36 0.00 0.00 2.62
715 775 1.470494 GCTCTAAGCTTTGGCCTTCAC 59.530 52.381 3.20 0.00 38.45 3.18
719 779 1.793414 AAGCTTTGGCCTTCACCTTT 58.207 45.000 3.32 0.00 39.73 3.11
764 824 6.893759 TGAACATTGGTTAATTGTCAGTACG 58.106 36.000 0.00 0.00 37.36 3.67
895 961 2.356069 GGATGGATCAAAGAGTTTCCGC 59.644 50.000 0.00 0.00 0.00 5.54
898 964 1.439679 GATCAAAGAGTTTCCGCCGT 58.560 50.000 0.00 0.00 0.00 5.68
900 966 0.391597 TCAAAGAGTTTCCGCCGTCT 59.608 50.000 0.00 0.00 0.00 4.18
905 971 2.665185 GTTTCCGCCGTCTGTGCT 60.665 61.111 0.00 0.00 0.00 4.40
955 1021 1.299541 CAGCTTATACGGCCACCTTG 58.700 55.000 2.24 0.00 0.00 3.61
956 1022 0.463833 AGCTTATACGGCCACCTTGC 60.464 55.000 2.24 0.00 0.00 4.01
966 1032 2.046892 CACCTTGCCCTCGTCCTG 60.047 66.667 0.00 0.00 0.00 3.86
988 1054 4.933064 CCGAGAGACGCCGGCATC 62.933 72.222 28.98 23.01 39.22 3.91
1067 1133 3.450578 TCGTGATCGCCCTATTGTTTAC 58.549 45.455 0.00 0.00 36.96 2.01
1069 1135 3.245284 CGTGATCGCCCTATTGTTTACTG 59.755 47.826 0.00 0.00 0.00 2.74
1101 1167 2.977178 CGGGAGCAGCAACTCTCT 59.023 61.111 0.00 0.00 34.81 3.10
1116 1182 0.674581 TCTCTGCATTCTGGTTGCCG 60.675 55.000 0.00 0.00 39.39 5.69
1140 1206 3.384789 TCCTCCTAATTCACATCAGTCGG 59.615 47.826 0.00 0.00 0.00 4.79
1187 1253 1.214367 GAGGAGAACGTGTTTTCGCA 58.786 50.000 0.00 0.00 0.00 5.10
1192 1258 0.317436 GAACGTGTTTTCGCATGGCA 60.317 50.000 0.00 0.00 0.00 4.92
1195 1261 1.003262 CGTGTTTTCGCATGGCAAGG 61.003 55.000 0.00 0.00 0.00 3.61
1207 1273 0.395586 TGGCAAGGTGTTGAGTGCTT 60.396 50.000 0.00 0.00 35.46 3.91
1214 1280 2.154462 GGTGTTGAGTGCTTATGCTGT 58.846 47.619 1.96 0.00 40.48 4.40
1215 1281 2.095567 GGTGTTGAGTGCTTATGCTGTG 60.096 50.000 1.96 0.00 40.48 3.66
1228 1294 1.300963 GCTGTGATCTTGGGAGCCA 59.699 57.895 0.00 0.00 0.00 4.75
1230 1296 0.617413 CTGTGATCTTGGGAGCCACT 59.383 55.000 0.00 0.00 30.78 4.00
1235 1301 2.846206 TGATCTTGGGAGCCACTAATGT 59.154 45.455 0.00 0.00 30.78 2.71
1246 1312 2.094390 GCCACTAATGTCCTGTACGTCA 60.094 50.000 0.00 0.00 0.00 4.35
1253 1319 6.810182 ACTAATGTCCTGTACGTCAATGTAAC 59.190 38.462 0.00 0.00 0.00 2.50
1256 1322 4.521639 TGTCCTGTACGTCAATGTAACTCT 59.478 41.667 0.00 0.00 0.00 3.24
1268 1334 1.203087 TGTAACTCTCTCCCGTCCCAA 60.203 52.381 0.00 0.00 0.00 4.12
1271 1337 0.252284 ACTCTCTCCCGTCCCAATGT 60.252 55.000 0.00 0.00 0.00 2.71
1286 1352 1.779061 AATGTCGGGACCTTGGTGCT 61.779 55.000 10.96 0.00 0.00 4.40
1287 1353 2.358737 GTCGGGACCTTGGTGCTG 60.359 66.667 13.05 13.05 0.00 4.41
1300 1366 4.069232 TGCTGGCGTCCTTCCTCG 62.069 66.667 0.00 0.00 0.00 4.63
1304 1370 2.342648 GGCGTCCTTCCTCGTGTT 59.657 61.111 0.00 0.00 0.00 3.32
1313 1379 1.573829 TTCCTCGTGTTCGCATTGGC 61.574 55.000 0.00 0.00 36.96 4.52
1327 1393 4.095782 TCGCATTGGCTATTTTCAAGTACC 59.904 41.667 0.00 0.00 38.10 3.34
1336 1402 4.576330 ATTTTCAAGTACCTGGAGAGGG 57.424 45.455 0.00 0.00 44.84 4.30
1337 1403 1.276622 TTCAAGTACCTGGAGAGGGC 58.723 55.000 0.00 0.00 44.84 5.19
1339 1405 0.539051 CAAGTACCTGGAGAGGGCAG 59.461 60.000 0.00 0.00 44.84 4.85
1340 1406 0.117340 AAGTACCTGGAGAGGGCAGT 59.883 55.000 0.00 0.00 44.84 4.40
1383 1449 3.875727 TGAGCAGCATCAAGAGCTTAATC 59.124 43.478 0.00 0.00 41.14 1.75
1389 1458 6.459848 GCAGCATCAAGAGCTTAATCAAGAAT 60.460 38.462 0.00 0.00 41.14 2.40
1392 1461 8.619546 AGCATCAAGAGCTTAATCAAGAATAAC 58.380 33.333 0.00 0.00 39.87 1.89
1397 1466 5.825151 AGAGCTTAATCAAGAATAACCAGCC 59.175 40.000 0.00 0.00 33.20 4.85
1400 1469 6.437162 AGCTTAATCAAGAATAACCAGCCAAA 59.563 34.615 0.00 0.00 33.20 3.28
1430 1501 3.587061 AGTTTCCATCACTGGTGTCCATA 59.413 43.478 0.53 0.00 43.61 2.74
1431 1502 4.228210 AGTTTCCATCACTGGTGTCCATAT 59.772 41.667 0.53 0.00 43.61 1.78
1497 1568 3.181498 TGCTTCATATCACCAAATGTGCG 60.181 43.478 0.00 0.00 45.03 5.34
1512 1583 0.376852 GTGCGTTTTGTGACTGCTCA 59.623 50.000 0.00 0.00 0.00 4.26
1513 1584 1.002468 GTGCGTTTTGTGACTGCTCAT 60.002 47.619 0.00 0.00 0.00 2.90
1518 1589 3.058016 CGTTTTGTGACTGCTCATTGGAT 60.058 43.478 0.00 0.00 0.00 3.41
1555 1626 2.739913 CGTGAAACCGGCAGAAAGATAA 59.260 45.455 0.00 0.00 0.00 1.75
1557 1628 4.569162 CGTGAAACCGGCAGAAAGATAATA 59.431 41.667 0.00 0.00 0.00 0.98
1637 1708 3.115390 ACCTCATATACACCAAGGCAGT 58.885 45.455 0.00 0.00 0.00 4.40
1667 1738 3.768633 CCTGGACTGGCTACATCAC 57.231 57.895 0.00 0.00 0.00 3.06
1696 1767 0.394192 CTCCCCGCTAATCATCTGCA 59.606 55.000 0.00 0.00 0.00 4.41
1715 1786 3.815962 TGCACCGTGCTATTTCTGTTAAA 59.184 39.130 23.52 0.00 45.31 1.52
1723 1794 8.556194 CCGTGCTATTTCTGTTAAATGCTTATA 58.444 33.333 0.00 0.00 0.00 0.98
1778 1849 4.497291 TCACTTACTTGTTGGTGGTCTT 57.503 40.909 0.00 0.00 0.00 3.01
1840 1911 1.000955 GGTCGACCTGGGCATATACAG 59.999 57.143 27.64 0.00 34.54 2.74
1903 1974 2.821969 GTCTGTGATGGAAAATGGCACT 59.178 45.455 0.00 0.00 0.00 4.40
1906 1977 2.170166 GTGATGGAAAATGGCACTGGA 58.830 47.619 0.00 0.00 0.00 3.86
1925 1996 3.516300 TGGATCCGTACCATTGTAGTGTT 59.484 43.478 7.39 0.00 32.03 3.32
1930 2001 5.421277 TCCGTACCATTGTAGTGTTTATGG 58.579 41.667 0.00 0.00 42.56 2.74
1931 2002 5.187381 TCCGTACCATTGTAGTGTTTATGGA 59.813 40.000 6.95 0.00 39.93 3.41
1932 2003 6.053005 CCGTACCATTGTAGTGTTTATGGAT 58.947 40.000 6.95 0.00 39.93 3.41
1933 2004 6.540914 CCGTACCATTGTAGTGTTTATGGATT 59.459 38.462 6.95 0.00 39.93 3.01
1934 2005 7.066525 CCGTACCATTGTAGTGTTTATGGATTT 59.933 37.037 6.95 0.00 39.93 2.17
1935 2006 7.908082 CGTACCATTGTAGTGTTTATGGATTTG 59.092 37.037 6.95 0.00 39.93 2.32
1936 2007 7.775053 ACCATTGTAGTGTTTATGGATTTGT 57.225 32.000 6.95 0.00 39.93 2.83
1937 2008 7.826690 ACCATTGTAGTGTTTATGGATTTGTC 58.173 34.615 6.95 0.00 39.93 3.18
1938 2009 7.093945 ACCATTGTAGTGTTTATGGATTTGTCC 60.094 37.037 6.95 0.00 39.93 4.02
1939 2010 6.827586 TTGTAGTGTTTATGGATTTGTCCC 57.172 37.500 0.00 0.00 0.00 4.46
1940 2011 4.938832 TGTAGTGTTTATGGATTTGTCCCG 59.061 41.667 0.00 0.00 0.00 5.14
1941 2012 4.295141 AGTGTTTATGGATTTGTCCCGA 57.705 40.909 0.00 0.00 0.00 5.14
1942 2013 4.007659 AGTGTTTATGGATTTGTCCCGAC 58.992 43.478 0.00 0.00 0.00 4.79
1943 2014 4.007659 GTGTTTATGGATTTGTCCCGACT 58.992 43.478 0.00 0.00 0.00 4.18
1944 2015 4.006989 TGTTTATGGATTTGTCCCGACTG 58.993 43.478 0.00 0.00 0.00 3.51
1945 2016 2.325583 TATGGATTTGTCCCGACTGC 57.674 50.000 0.00 0.00 0.00 4.40
1946 2017 0.394352 ATGGATTTGTCCCGACTGCC 60.394 55.000 0.00 0.00 0.00 4.85
1947 2018 1.749258 GGATTTGTCCCGACTGCCC 60.749 63.158 0.00 0.00 0.00 5.36
1948 2019 1.299976 GATTTGTCCCGACTGCCCT 59.700 57.895 0.00 0.00 0.00 5.19
1949 2020 0.322546 GATTTGTCCCGACTGCCCTT 60.323 55.000 0.00 0.00 0.00 3.95
1950 2021 0.609131 ATTTGTCCCGACTGCCCTTG 60.609 55.000 0.00 0.00 0.00 3.61
1951 2022 1.990160 TTTGTCCCGACTGCCCTTGT 61.990 55.000 0.00 0.00 0.00 3.16
1952 2023 1.990160 TTGTCCCGACTGCCCTTGTT 61.990 55.000 0.00 0.00 0.00 2.83
1953 2024 1.228154 GTCCCGACTGCCCTTGTTT 60.228 57.895 0.00 0.00 0.00 2.83
1954 2025 0.822121 GTCCCGACTGCCCTTGTTTT 60.822 55.000 0.00 0.00 0.00 2.43
1955 2026 0.536460 TCCCGACTGCCCTTGTTTTC 60.536 55.000 0.00 0.00 0.00 2.29
1956 2027 0.537371 CCCGACTGCCCTTGTTTTCT 60.537 55.000 0.00 0.00 0.00 2.52
1957 2028 0.593128 CCGACTGCCCTTGTTTTCTG 59.407 55.000 0.00 0.00 0.00 3.02
1958 2029 0.593128 CGACTGCCCTTGTTTTCTGG 59.407 55.000 0.00 0.00 0.00 3.86
1959 2030 1.692411 GACTGCCCTTGTTTTCTGGT 58.308 50.000 0.00 0.00 0.00 4.00
1960 2031 2.031870 GACTGCCCTTGTTTTCTGGTT 58.968 47.619 0.00 0.00 0.00 3.67
1961 2032 3.219281 GACTGCCCTTGTTTTCTGGTTA 58.781 45.455 0.00 0.00 0.00 2.85
1962 2033 2.956333 ACTGCCCTTGTTTTCTGGTTAC 59.044 45.455 0.00 0.00 0.00 2.50
1963 2034 3.222603 CTGCCCTTGTTTTCTGGTTACT 58.777 45.455 0.00 0.00 0.00 2.24
1964 2035 4.141344 ACTGCCCTTGTTTTCTGGTTACTA 60.141 41.667 0.00 0.00 0.00 1.82
1965 2036 4.139038 TGCCCTTGTTTTCTGGTTACTAC 58.861 43.478 0.00 0.00 0.00 2.73
1966 2037 3.504906 GCCCTTGTTTTCTGGTTACTACC 59.495 47.826 0.00 0.00 45.26 3.18
1975 2046 3.430779 GGTTACTACCGTGAGCCAC 57.569 57.895 0.00 0.00 34.01 5.01
1976 2047 0.893447 GGTTACTACCGTGAGCCACT 59.107 55.000 4.21 0.00 34.01 4.00
1977 2048 1.403780 GGTTACTACCGTGAGCCACTG 60.404 57.143 4.21 0.64 34.01 3.66
1981 2052 1.877576 CTACCGTGAGCCACTGAGCA 61.878 60.000 4.29 0.00 34.23 4.26
1984 2055 2.746359 GTGAGCCACTGAGCACCT 59.254 61.111 0.00 0.00 34.23 4.00
1985 2056 1.072159 GTGAGCCACTGAGCACCTT 59.928 57.895 0.00 0.00 34.23 3.50
1990 2061 0.819259 GCCACTGAGCACCTTGTTCA 60.819 55.000 0.00 0.00 35.22 3.18
1998 2069 3.698539 TGAGCACCTTGTTCAACATGAAA 59.301 39.130 0.00 0.00 38.22 2.69
2000 2071 3.123050 GCACCTTGTTCAACATGAAACC 58.877 45.455 0.00 0.00 38.22 3.27
2009 2080 3.215151 TCAACATGAAACCGCCAAGTAA 58.785 40.909 0.00 0.00 0.00 2.24
2073 2144 1.458445 CATGAGTGCACTCGTCACAAG 59.542 52.381 33.68 20.63 45.72 3.16
2077 2148 0.249489 GTGCACTCGTCACAAGGACT 60.249 55.000 10.32 0.00 44.68 3.85
2098 2169 8.915036 AGGACTATCCAATAAGTGTAAGTAGTG 58.085 37.037 0.00 0.00 39.61 2.74
2113 2184 0.322456 TAGTGTGATGGGCCTGTTGC 60.322 55.000 4.53 0.00 40.16 4.17
2114 2185 1.604593 GTGTGATGGGCCTGTTGCT 60.605 57.895 4.53 0.00 40.92 3.91
2159 2230 1.942657 GCAGCACGAATACCATGACAT 59.057 47.619 0.00 0.00 0.00 3.06
2160 2231 2.032549 GCAGCACGAATACCATGACATC 60.033 50.000 0.00 0.00 0.00 3.06
2162 2233 2.170397 AGCACGAATACCATGACATCCA 59.830 45.455 0.00 0.00 0.00 3.41
2202 2273 5.422012 ACAAGATTTGAAGGGTCTGTTGTTT 59.578 36.000 0.00 0.00 0.00 2.83
2212 2283 3.551551 GGTCTGTTGTTTGAACGCATAC 58.448 45.455 0.00 0.00 0.00 2.39
2226 2297 2.879646 ACGCATACGGGAAAAGTTGAAA 59.120 40.909 0.00 0.00 46.04 2.69
2240 2311 9.061610 GGAAAAGTTGAAATTATCATACACACG 57.938 33.333 0.00 0.00 38.03 4.49
2241 2312 8.964420 AAAAGTTGAAATTATCATACACACGG 57.036 30.769 0.00 0.00 38.03 4.94
2242 2313 6.119144 AGTTGAAATTATCATACACACGGC 57.881 37.500 0.00 0.00 38.03 5.68
2245 2316 2.561478 ATTATCATACACACGGCCCC 57.439 50.000 0.00 0.00 0.00 5.80
2250 2321 3.338275 ATACACACGGCCCCGCAAT 62.338 57.895 6.63 0.00 44.19 3.56
2254 2325 4.418401 CACGGCCCCGCAATGTTG 62.418 66.667 6.63 0.00 44.19 3.33
2263 2334 2.772739 CGCAATGTTGAGGAGGAGG 58.227 57.895 0.00 0.00 0.00 4.30
2264 2335 0.250234 CGCAATGTTGAGGAGGAGGA 59.750 55.000 0.00 0.00 0.00 3.71
2265 2336 1.339055 CGCAATGTTGAGGAGGAGGAA 60.339 52.381 0.00 0.00 0.00 3.36
2266 2337 2.363683 GCAATGTTGAGGAGGAGGAAG 58.636 52.381 0.00 0.00 0.00 3.46
2267 2338 2.026822 GCAATGTTGAGGAGGAGGAAGA 60.027 50.000 0.00 0.00 0.00 2.87
2268 2339 3.560025 GCAATGTTGAGGAGGAGGAAGAA 60.560 47.826 0.00 0.00 0.00 2.52
2269 2340 4.260170 CAATGTTGAGGAGGAGGAAGAAG 58.740 47.826 0.00 0.00 0.00 2.85
2270 2341 3.260269 TGTTGAGGAGGAGGAAGAAGA 57.740 47.619 0.00 0.00 0.00 2.87
2271 2342 3.169099 TGTTGAGGAGGAGGAAGAAGAG 58.831 50.000 0.00 0.00 0.00 2.85
2272 2343 2.499693 GTTGAGGAGGAGGAAGAAGAGG 59.500 54.545 0.00 0.00 0.00 3.69
2273 2344 1.007721 TGAGGAGGAGGAAGAAGAGGG 59.992 57.143 0.00 0.00 0.00 4.30
2274 2345 1.289530 GAGGAGGAGGAAGAAGAGGGA 59.710 57.143 0.00 0.00 0.00 4.20
2292 2363 2.550180 GGGAGAAGAAGTTGTGCAGTTC 59.450 50.000 0.00 0.00 35.27 3.01
2296 2367 4.130118 AGAAGAAGTTGTGCAGTTCGATT 58.870 39.130 0.00 0.00 39.56 3.34
2314 2385 3.309138 CGATTCTGATGAGTTGCAAGAGG 59.691 47.826 0.00 0.00 0.00 3.69
2352 2423 0.178975 TGGCCACGGACATTTTCCTT 60.179 50.000 0.00 0.00 43.25 3.36
2377 2448 0.529378 GGCCACCTTTGCAGATGAAG 59.471 55.000 0.00 0.00 0.00 3.02
2416 2487 2.424557 AGTTGATCAGCAAGCTGTCTG 58.575 47.619 20.34 8.70 43.96 3.51
2440 2511 0.179029 CCTGGTGTTCCTCGTGGTTT 60.179 55.000 2.99 0.00 34.23 3.27
2443 2514 2.546789 CTGGTGTTCCTCGTGGTTTTAC 59.453 50.000 2.99 0.00 34.23 2.01
2444 2515 2.093075 TGGTGTTCCTCGTGGTTTTACA 60.093 45.455 2.99 2.08 34.23 2.41
2450 2521 1.519408 CTCGTGGTTTTACACCCCAG 58.481 55.000 0.00 0.00 46.68 4.45
2495 2566 4.610945 CCAAGCAAGTACAAAGAAACCAG 58.389 43.478 0.00 0.00 0.00 4.00
2501 2572 5.678616 GCAAGTACAAAGAAACCAGCAAAGA 60.679 40.000 0.00 0.00 0.00 2.52
2511 2582 3.297134 ACCAGCAAAGAGTTGAAGGAA 57.703 42.857 5.09 0.00 36.83 3.36
2513 2584 4.218312 ACCAGCAAAGAGTTGAAGGAATT 58.782 39.130 5.09 0.00 36.83 2.17
2514 2585 4.038402 ACCAGCAAAGAGTTGAAGGAATTG 59.962 41.667 5.09 0.00 36.83 2.32
2522 2593 5.440610 AGAGTTGAAGGAATTGTTGAGTGT 58.559 37.500 0.00 0.00 0.00 3.55
2563 2634 3.189285 TGCAAAACAAGAAAGCAGAAGC 58.811 40.909 0.00 0.00 42.56 3.86
2583 2654 2.825532 GCTTGCCTTTATCCTGGAACAA 59.174 45.455 0.00 0.00 38.70 2.83
2588 2659 4.023291 GCCTTTATCCTGGAACAAATGGA 58.977 43.478 18.15 0.00 38.70 3.41
2590 2661 5.509498 CCTTTATCCTGGAACAAATGGAGA 58.491 41.667 0.00 0.00 38.70 3.71
2592 2663 6.096001 CCTTTATCCTGGAACAAATGGAGAAG 59.904 42.308 0.00 0.00 33.94 2.85
2593 2664 2.795329 TCCTGGAACAAATGGAGAAGC 58.205 47.619 0.00 0.00 38.70 3.86
2594 2665 2.376518 TCCTGGAACAAATGGAGAAGCT 59.623 45.455 0.00 0.00 38.70 3.74
2595 2666 3.587061 TCCTGGAACAAATGGAGAAGCTA 59.413 43.478 0.00 0.00 38.70 3.32
2596 2667 3.944015 CCTGGAACAAATGGAGAAGCTAG 59.056 47.826 0.00 0.00 38.70 3.42
2597 2668 4.566488 CCTGGAACAAATGGAGAAGCTAGT 60.566 45.833 0.00 0.00 38.70 2.57
2598 2669 4.985538 TGGAACAAATGGAGAAGCTAGTT 58.014 39.130 0.00 0.00 31.92 2.24
2599 2670 5.385198 TGGAACAAATGGAGAAGCTAGTTT 58.615 37.500 0.00 0.00 31.92 2.66
2600 2671 5.833131 TGGAACAAATGGAGAAGCTAGTTTT 59.167 36.000 0.00 0.00 31.92 2.43
2601 2672 6.152379 GGAACAAATGGAGAAGCTAGTTTTG 58.848 40.000 0.00 0.00 0.00 2.44
2602 2673 6.016276 GGAACAAATGGAGAAGCTAGTTTTGA 60.016 38.462 0.00 0.00 0.00 2.69
2603 2674 6.959639 ACAAATGGAGAAGCTAGTTTTGAA 57.040 33.333 0.00 0.00 0.00 2.69
2604 2675 6.739112 ACAAATGGAGAAGCTAGTTTTGAAC 58.261 36.000 0.00 0.00 0.00 3.18
2605 2676 5.613358 AATGGAGAAGCTAGTTTTGAACG 57.387 39.130 0.00 0.00 36.23 3.95
2606 2677 3.399330 TGGAGAAGCTAGTTTTGAACGG 58.601 45.455 0.00 0.00 36.23 4.44
2607 2678 2.159824 GGAGAAGCTAGTTTTGAACGGC 59.840 50.000 0.00 4.54 36.23 5.68
2608 2679 2.806244 GAGAAGCTAGTTTTGAACGGCA 59.194 45.455 0.00 0.00 37.43 5.69
2609 2680 3.211045 AGAAGCTAGTTTTGAACGGCAA 58.789 40.909 0.00 0.00 37.43 4.52
2610 2681 3.821033 AGAAGCTAGTTTTGAACGGCAAT 59.179 39.130 0.00 3.75 36.15 3.56
2611 2682 3.559238 AGCTAGTTTTGAACGGCAATG 57.441 42.857 11.79 0.00 36.15 2.82
2612 2683 2.228822 AGCTAGTTTTGAACGGCAATGG 59.771 45.455 11.79 0.00 36.15 3.16
2613 2684 2.227865 GCTAGTTTTGAACGGCAATGGA 59.772 45.455 0.00 0.00 36.15 3.41
2614 2685 3.670627 GCTAGTTTTGAACGGCAATGGAG 60.671 47.826 0.00 0.00 36.15 3.86
2615 2686 2.582052 AGTTTTGAACGGCAATGGAGA 58.418 42.857 0.00 0.00 36.15 3.71
2616 2687 3.157087 AGTTTTGAACGGCAATGGAGAT 58.843 40.909 0.00 0.00 36.15 2.75
2617 2688 3.057315 AGTTTTGAACGGCAATGGAGATG 60.057 43.478 0.00 0.00 36.15 2.90
2618 2689 1.462616 TTGAACGGCAATGGAGATGG 58.537 50.000 0.00 0.00 0.00 3.51
2619 2690 1.031571 TGAACGGCAATGGAGATGGC 61.032 55.000 0.00 0.00 39.76 4.40
2620 2691 1.001020 AACGGCAATGGAGATGGCA 60.001 52.632 0.00 0.00 43.00 4.92
2643 2714 7.382759 GGCAGAAATAGTACTAGTAGCATTGTC 59.617 40.741 17.98 6.36 0.00 3.18
2656 2727 1.950484 GCATTGTCCTGTCGGATGGTT 60.950 52.381 0.00 0.00 42.43 3.67
2668 2739 3.689649 GTCGGATGGTTATCAATATGCCC 59.310 47.826 0.00 0.00 34.90 5.36
2677 2748 2.928801 TCAATATGCCCGTGTGCTAT 57.071 45.000 0.00 0.00 0.00 2.97
2682 2753 0.541392 ATGCCCGTGTGCTATGAAGA 59.459 50.000 0.00 0.00 0.00 2.87
2764 2835 3.942829 AGATTTCAGAAGTTGATGCCGA 58.057 40.909 0.00 0.00 35.27 5.54
2797 2868 1.546476 ACTCTGAGTTGGTCACCGATC 59.454 52.381 4.06 0.00 0.00 3.69
2832 2906 3.284617 TCTCATCTTTGATGCATGGGTG 58.715 45.455 2.46 0.00 0.00 4.61
2857 2931 4.746535 TTGCTCATGAATGCATCCAAAT 57.253 36.364 10.14 0.00 39.07 2.32
2916 2990 0.804933 GCGGTGACCTCGTAACCATC 60.805 60.000 0.00 0.00 36.89 3.51
2976 3050 3.845398 TCCAAGAGGAAAATAACGGGGTA 59.155 43.478 0.00 0.00 42.23 3.69
2979 3053 5.190677 CAAGAGGAAAATAACGGGGTATGT 58.809 41.667 0.00 0.00 0.00 2.29
3020 3100 4.776837 TGGTATGTTCCAATCATTTGCCTT 59.223 37.500 0.00 0.00 34.24 4.35
3038 3118 2.436173 CCTTGTGTCCCTATCTCCCTTC 59.564 54.545 0.00 0.00 0.00 3.46
3039 3119 3.379452 CTTGTGTCCCTATCTCCCTTCT 58.621 50.000 0.00 0.00 0.00 2.85
3040 3120 3.033659 TGTGTCCCTATCTCCCTTCTC 57.966 52.381 0.00 0.00 0.00 2.87
3041 3121 2.587777 TGTGTCCCTATCTCCCTTCTCT 59.412 50.000 0.00 0.00 0.00 3.10
3042 3122 3.012959 TGTGTCCCTATCTCCCTTCTCTT 59.987 47.826 0.00 0.00 0.00 2.85
3043 3123 4.034410 GTGTCCCTATCTCCCTTCTCTTT 58.966 47.826 0.00 0.00 0.00 2.52
3044 3124 5.209659 GTGTCCCTATCTCCCTTCTCTTTA 58.790 45.833 0.00 0.00 0.00 1.85
3045 3125 5.069383 GTGTCCCTATCTCCCTTCTCTTTAC 59.931 48.000 0.00 0.00 0.00 2.01
3046 3126 4.589798 GTCCCTATCTCCCTTCTCTTTACC 59.410 50.000 0.00 0.00 0.00 2.85
3047 3127 4.486529 TCCCTATCTCCCTTCTCTTTACCT 59.513 45.833 0.00 0.00 0.00 3.08
3048 3128 5.042523 TCCCTATCTCCCTTCTCTTTACCTT 60.043 44.000 0.00 0.00 0.00 3.50
3053 3133 6.509523 TCTCCCTTCTCTTTACCTTTTTGA 57.490 37.500 0.00 0.00 0.00 2.69
3069 3149 5.865552 CCTTTTTGAATTGGCTACTCATGTG 59.134 40.000 0.00 0.00 0.00 3.21
3070 3150 6.403866 TTTTTGAATTGGCTACTCATGTGT 57.596 33.333 5.63 5.63 0.00 3.72
3071 3151 6.403866 TTTTGAATTGGCTACTCATGTGTT 57.596 33.333 5.63 0.00 0.00 3.32
3072 3152 7.517614 TTTTGAATTGGCTACTCATGTGTTA 57.482 32.000 5.63 0.00 0.00 2.41
3073 3153 7.701539 TTTGAATTGGCTACTCATGTGTTAT 57.298 32.000 5.63 0.00 0.00 1.89
3074 3154 6.682423 TGAATTGGCTACTCATGTGTTATG 57.318 37.500 5.63 0.00 0.00 1.90
3075 3155 6.413892 TGAATTGGCTACTCATGTGTTATGA 58.586 36.000 5.63 0.00 0.00 2.15
3076 3156 7.056006 TGAATTGGCTACTCATGTGTTATGAT 58.944 34.615 5.63 0.00 0.00 2.45
3077 3157 7.227314 TGAATTGGCTACTCATGTGTTATGATC 59.773 37.037 5.63 0.00 0.00 2.92
3078 3158 5.876651 TGGCTACTCATGTGTTATGATCT 57.123 39.130 5.63 0.00 0.00 2.75
3079 3159 5.847304 TGGCTACTCATGTGTTATGATCTC 58.153 41.667 5.63 0.00 0.00 2.75
3080 3160 5.363580 TGGCTACTCATGTGTTATGATCTCA 59.636 40.000 5.63 0.00 0.00 3.27
3081 3161 5.694006 GGCTACTCATGTGTTATGATCTCAC 59.306 44.000 5.63 0.00 0.00 3.51
3130 3210 4.159120 GTTTGGAATTAGCTGTTCTTCGC 58.841 43.478 11.84 0.00 0.00 4.70
3150 3230 2.224305 GCCAGGTTGTCAGTGTAAGTCT 60.224 50.000 0.00 0.00 0.00 3.24
3166 3246 1.830477 AGTCTTCTGCTCCTCCATGTC 59.170 52.381 0.00 0.00 0.00 3.06
3184 3264 2.111384 GTCAGGAGGCTACATTCAGGA 58.889 52.381 0.00 0.00 0.00 3.86
3236 3316 6.816134 TCTACATGAATTTAGTGCTTTGCA 57.184 33.333 0.00 0.00 35.60 4.08
3239 3319 5.786311 ACATGAATTTAGTGCTTTGCATGT 58.214 33.333 0.00 0.00 41.91 3.21
3248 3328 0.316204 GCTTTGCATGTTGCTGGAGT 59.684 50.000 0.75 0.00 45.31 3.85
3252 3332 1.229975 TGCATGTTGCTGGAGTGACG 61.230 55.000 0.75 0.00 45.31 4.35
3268 3348 2.097466 GTGACGGACAAATTGCATAGGG 59.903 50.000 0.00 0.00 0.00 3.53
3468 3553 1.890979 CTCGCCACCATGATGGAGC 60.891 63.158 20.11 18.44 43.02 4.70
3531 3616 0.039472 TGATGTGATTGTGGTGGGGG 59.961 55.000 0.00 0.00 0.00 5.40
3545 3630 4.097361 GGGGGAGCGGTGGAGAAC 62.097 72.222 0.00 0.00 0.00 3.01
3609 3694 3.314357 CAGACCATAGTTCCGACGATGTA 59.686 47.826 0.00 0.00 37.23 2.29
3624 3709 3.447586 ACGATGTAGACAACTATGGCAGT 59.552 43.478 0.00 0.00 36.86 4.40
3644 3729 2.229675 TGCCGATTGCTATCTGTGAG 57.770 50.000 6.58 0.00 42.00 3.51
3645 3730 1.482182 TGCCGATTGCTATCTGTGAGT 59.518 47.619 6.58 0.00 42.00 3.41
3646 3731 1.863454 GCCGATTGCTATCTGTGAGTG 59.137 52.381 6.58 0.00 36.87 3.51
3647 3732 2.481969 GCCGATTGCTATCTGTGAGTGA 60.482 50.000 6.58 0.00 36.87 3.41
3654 3739 1.204704 CTATCTGTGAGTGAACCGGCA 59.795 52.381 0.00 0.00 0.00 5.69
3658 3743 0.813610 TGTGAGTGAACCGGCACAAG 60.814 55.000 13.75 0.00 41.19 3.16
3665 3750 1.078072 AACCGGCACAAGTCACACA 60.078 52.632 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 5.746990 AGCACATTCTAGGTTGAACTACT 57.253 39.130 0.00 0.00 0.00 2.57
55 56 6.631962 AGTAGCACATTCTAGGTTGAACTAC 58.368 40.000 0.00 14.46 0.00 2.73
56 57 6.852420 AGTAGCACATTCTAGGTTGAACTA 57.148 37.500 0.00 0.00 0.00 2.24
57 58 5.746990 AGTAGCACATTCTAGGTTGAACT 57.253 39.130 0.00 0.00 0.00 3.01
61 62 5.269505 AGCTAGTAGCACATTCTAGGTTG 57.730 43.478 23.77 0.00 45.56 3.77
79 80 1.747552 CGCTGGTGACTAGAGGAGCTA 60.748 57.143 0.00 0.00 0.00 3.32
98 103 1.029681 TCATGGGTGTATCCGACTCG 58.970 55.000 0.00 0.00 37.00 4.18
155 168 2.361737 GCCCCAGCTCAAAGACCC 60.362 66.667 0.00 0.00 35.50 4.46
156 169 2.747855 CGCCCCAGCTCAAAGACC 60.748 66.667 0.00 0.00 36.60 3.85
189 202 0.815615 GCAGGGGAGCGAAATCGATT 60.816 55.000 4.39 4.39 43.02 3.34
212 225 1.145156 CAACATACCGGCCGATGGA 59.855 57.895 30.73 8.04 0.00 3.41
214 227 1.145156 TCCAACATACCGGCCGATG 59.855 57.895 30.73 25.29 0.00 3.84
246 263 8.491331 ACAACAATTAACTGCAGAAAAACATT 57.509 26.923 23.35 4.57 0.00 2.71
249 266 8.531530 CACTACAACAATTAACTGCAGAAAAAC 58.468 33.333 23.35 0.00 0.00 2.43
283 300 0.939419 ACCGTCGCTTAAAAACGCTT 59.061 45.000 0.00 0.00 35.17 4.68
288 305 2.286536 GCTCAACACCGTCGCTTAAAAA 60.287 45.455 0.00 0.00 0.00 1.94
302 319 0.040514 CGTTTTGGCATCGCTCAACA 60.041 50.000 0.00 0.00 0.00 3.33
304 321 1.081509 GCGTTTTGGCATCGCTCAA 60.082 52.632 19.34 0.00 45.29 3.02
314 331 2.030335 GGACAAAAGCAAAGCGTTTTGG 59.970 45.455 23.54 10.76 44.48 3.28
390 407 3.133691 CAAGCAGACAAGCAGAACAGTA 58.866 45.455 0.00 0.00 36.85 2.74
392 409 1.334779 GCAAGCAGACAAGCAGAACAG 60.335 52.381 0.00 0.00 36.85 3.16
393 410 0.664761 GCAAGCAGACAAGCAGAACA 59.335 50.000 0.00 0.00 36.85 3.18
394 411 0.664761 TGCAAGCAGACAAGCAGAAC 59.335 50.000 0.00 0.00 36.85 3.01
453 476 3.465871 GCCAAAATTTTGCTCCTGAACA 58.534 40.909 22.90 0.00 36.86 3.18
458 481 1.270252 CGTGGCCAAAATTTTGCTCCT 60.270 47.619 26.61 0.00 36.86 3.69
476 519 9.742144 ATAGACATAACCTAATAGAGATCACGT 57.258 33.333 0.00 0.00 0.00 4.49
510 553 9.830975 AGCAAAATAACAACTAAAATGGAGTTT 57.169 25.926 0.00 0.00 34.90 2.66
515 558 8.086851 AGCAAGCAAAATAACAACTAAAATGG 57.913 30.769 0.00 0.00 0.00 3.16
557 616 6.731292 ATAGAGTTCACACCATAGCACATA 57.269 37.500 0.00 0.00 0.00 2.29
561 620 8.856153 TTTAAAATAGAGTTCACACCATAGCA 57.144 30.769 0.00 0.00 0.00 3.49
637 696 9.023962 TGGCTAGAATTGACAGATTTTTGTATT 57.976 29.630 0.00 0.00 0.00 1.89
638 697 8.579850 TGGCTAGAATTGACAGATTTTTGTAT 57.420 30.769 0.00 0.00 0.00 2.29
639 698 7.994425 TGGCTAGAATTGACAGATTTTTGTA 57.006 32.000 0.00 0.00 0.00 2.41
640 699 6.899393 TGGCTAGAATTGACAGATTTTTGT 57.101 33.333 0.00 0.00 0.00 2.83
641 700 8.767478 AATTGGCTAGAATTGACAGATTTTTG 57.233 30.769 0.00 0.00 0.00 2.44
706 766 1.616159 GTAAGCAAAGGTGAAGGCCA 58.384 50.000 5.01 0.00 0.00 5.36
764 824 2.032680 TTTGCGGGGAAGTATGCTAC 57.967 50.000 0.00 0.00 0.00 3.58
787 847 5.572896 GCCTGTGTATGCTACAAACAATTTC 59.427 40.000 0.00 0.00 40.93 2.17
895 961 0.532573 ATCCAGTGTAGCACAGACGG 59.467 55.000 2.01 0.00 36.74 4.79
898 964 2.432146 GGATGATCCAGTGTAGCACAGA 59.568 50.000 6.60 0.00 36.74 3.41
900 966 1.136891 CGGATGATCCAGTGTAGCACA 59.863 52.381 12.67 0.00 35.91 4.57
905 971 1.119684 CCCACGGATGATCCAGTGTA 58.880 55.000 24.21 0.00 38.48 2.90
974 1040 3.842923 CCTGATGCCGGCGTCTCT 61.843 66.667 40.28 16.50 33.41 3.10
999 1065 1.618876 TAGCCCACCACGGTACCATG 61.619 60.000 13.54 6.90 0.00 3.66
1000 1066 1.306312 TAGCCCACCACGGTACCAT 60.306 57.895 13.54 0.00 0.00 3.55
1012 1078 4.690719 CGCCAACACGGTAGCCCA 62.691 66.667 0.00 0.00 36.97 5.36
1050 1116 2.548480 GCCAGTAAACAATAGGGCGATC 59.452 50.000 0.00 0.00 0.00 3.69
1054 1120 1.669265 GTCGCCAGTAAACAATAGGGC 59.331 52.381 0.00 0.00 38.04 5.19
1101 1167 1.523154 GGAACGGCAACCAGAATGCA 61.523 55.000 0.00 0.00 45.60 3.96
1104 1170 0.322546 GGAGGAACGGCAACCAGAAT 60.323 55.000 0.00 0.00 0.00 2.40
1116 1182 4.806247 CGACTGATGTGAATTAGGAGGAAC 59.194 45.833 0.00 0.00 0.00 3.62
1140 1206 3.499737 CCGCTGATGTTGTCCGGC 61.500 66.667 0.00 0.00 31.87 6.13
1176 1242 1.003262 CCTTGCCATGCGAAAACACG 61.003 55.000 0.00 0.00 0.00 4.49
1187 1253 0.178981 AGCACTCAACACCTTGCCAT 60.179 50.000 0.00 0.00 35.47 4.40
1192 1258 2.816087 CAGCATAAGCACTCAACACCTT 59.184 45.455 0.00 0.00 45.49 3.50
1195 1261 2.807967 TCACAGCATAAGCACTCAACAC 59.192 45.455 0.00 0.00 45.49 3.32
1207 1273 1.141657 GGCTCCCAAGATCACAGCATA 59.858 52.381 0.00 0.00 0.00 3.14
1214 1280 2.846206 ACATTAGTGGCTCCCAAGATCA 59.154 45.455 0.00 0.00 34.18 2.92
1215 1281 3.471680 GACATTAGTGGCTCCCAAGATC 58.528 50.000 0.00 0.00 34.18 2.75
1228 1294 5.401531 ACATTGACGTACAGGACATTAGT 57.598 39.130 0.00 0.00 0.00 2.24
1230 1296 6.927416 AGTTACATTGACGTACAGGACATTA 58.073 36.000 0.00 0.00 0.00 1.90
1235 1301 5.008331 AGAGAGTTACATTGACGTACAGGA 58.992 41.667 0.00 0.00 0.00 3.86
1246 1312 2.108970 GGGACGGGAGAGAGTTACATT 58.891 52.381 0.00 0.00 0.00 2.71
1253 1319 0.461961 GACATTGGGACGGGAGAGAG 59.538 60.000 0.00 0.00 0.00 3.20
1256 1322 2.355986 CCGACATTGGGACGGGAGA 61.356 63.158 0.00 0.00 42.48 3.71
1268 1334 2.224159 AGCACCAAGGTCCCGACAT 61.224 57.895 0.00 0.00 0.00 3.06
1271 1337 3.636231 CCAGCACCAAGGTCCCGA 61.636 66.667 0.00 0.00 0.00 5.14
1286 1352 2.430382 GAACACGAGGAAGGACGCCA 62.430 60.000 0.00 0.00 0.00 5.69
1287 1353 1.737008 GAACACGAGGAAGGACGCC 60.737 63.158 0.00 0.00 0.00 5.68
1300 1366 3.832276 TGAAAATAGCCAATGCGAACAC 58.168 40.909 0.00 0.00 44.33 3.32
1304 1370 4.095782 GGTACTTGAAAATAGCCAATGCGA 59.904 41.667 0.00 0.00 44.33 5.10
1313 1379 5.675538 CCCTCTCCAGGTACTTGAAAATAG 58.324 45.833 6.55 0.00 38.30 1.73
1327 1393 1.673665 GTGCAACTGCCCTCTCCAG 60.674 63.158 0.00 0.00 41.18 3.86
1336 1402 1.239968 CCTCTCCCTTGTGCAACTGC 61.240 60.000 0.00 0.00 38.04 4.40
1337 1403 1.239968 GCCTCTCCCTTGTGCAACTG 61.240 60.000 0.00 0.00 38.04 3.16
1339 1405 0.823356 TTGCCTCTCCCTTGTGCAAC 60.823 55.000 0.00 0.00 37.04 4.17
1340 1406 0.823356 GTTGCCTCTCCCTTGTGCAA 60.823 55.000 0.00 0.00 39.42 4.08
1376 1442 5.835113 TGGCTGGTTATTCTTGATTAAGC 57.165 39.130 0.00 7.23 33.82 3.09
1383 1449 6.151648 TGAATCTCTTTGGCTGGTTATTCTTG 59.848 38.462 0.00 0.00 0.00 3.02
1389 1458 4.640771 ACTGAATCTCTTTGGCTGGTTA 57.359 40.909 0.00 0.00 0.00 2.85
1392 1461 3.192212 GGAAACTGAATCTCTTTGGCTGG 59.808 47.826 0.00 0.00 0.00 4.85
1397 1466 6.349115 CCAGTGATGGAAACTGAATCTCTTTG 60.349 42.308 5.17 0.00 46.55 2.77
1400 1469 4.288105 ACCAGTGATGGAAACTGAATCTCT 59.712 41.667 5.17 0.00 46.55 3.10
1430 1501 1.642762 GATCATTATCCAGGGGCCCAT 59.357 52.381 27.72 16.07 0.00 4.00
1431 1502 1.075601 GATCATTATCCAGGGGCCCA 58.924 55.000 27.72 3.88 0.00 5.36
1497 1568 3.988379 TCCAATGAGCAGTCACAAAAC 57.012 42.857 0.00 0.00 34.75 2.43
1528 1599 1.413767 CTGCCGGTTTCACGATCGAG 61.414 60.000 24.34 15.06 35.47 4.04
1529 1600 1.445410 CTGCCGGTTTCACGATCGA 60.445 57.895 24.34 0.00 35.47 3.59
1533 1604 0.105224 TCTTTCTGCCGGTTTCACGA 59.895 50.000 1.90 0.00 35.47 4.35
1555 1626 6.013898 CACATACTCTCCCATCCACAAGATAT 60.014 42.308 0.00 0.00 32.37 1.63
1557 1628 4.102210 CACATACTCTCCCATCCACAAGAT 59.898 45.833 0.00 0.00 34.66 2.40
1649 1720 0.179000 GGTGATGTAGCCAGTCCAGG 59.821 60.000 0.00 0.00 0.00 4.45
1696 1767 4.700213 AGCATTTAACAGAAATAGCACGGT 59.300 37.500 0.00 0.00 0.00 4.83
1715 1786 8.523915 TGATTGGAATTCACTGTTATAAGCAT 57.476 30.769 7.93 0.00 0.00 3.79
1723 1794 7.453393 TCTTCTACTGATTGGAATTCACTGTT 58.547 34.615 7.93 0.00 0.00 3.16
1725 1796 9.775854 ATATCTTCTACTGATTGGAATTCACTG 57.224 33.333 7.93 2.85 0.00 3.66
1903 1974 3.101437 ACACTACAATGGTACGGATCCA 58.899 45.455 13.41 0.00 39.41 3.41
1906 1977 6.053005 CCATAAACACTACAATGGTACGGAT 58.947 40.000 0.00 0.00 35.23 4.18
1930 2001 0.322546 AAGGGCAGTCGGGACAAATC 60.323 55.000 1.17 0.00 0.00 2.17
1931 2002 0.609131 CAAGGGCAGTCGGGACAAAT 60.609 55.000 1.17 0.00 0.00 2.32
1932 2003 1.228124 CAAGGGCAGTCGGGACAAA 60.228 57.895 1.17 0.00 0.00 2.83
1933 2004 1.990160 AACAAGGGCAGTCGGGACAA 61.990 55.000 1.17 0.00 0.00 3.18
1934 2005 1.990160 AAACAAGGGCAGTCGGGACA 61.990 55.000 1.17 0.00 0.00 4.02
1935 2006 0.822121 AAAACAAGGGCAGTCGGGAC 60.822 55.000 0.00 0.00 0.00 4.46
1936 2007 0.536460 GAAAACAAGGGCAGTCGGGA 60.536 55.000 0.00 0.00 0.00 5.14
1937 2008 0.537371 AGAAAACAAGGGCAGTCGGG 60.537 55.000 0.00 0.00 0.00 5.14
1938 2009 0.593128 CAGAAAACAAGGGCAGTCGG 59.407 55.000 0.00 0.00 0.00 4.79
1939 2010 0.593128 CCAGAAAACAAGGGCAGTCG 59.407 55.000 0.00 0.00 0.00 4.18
1940 2011 1.692411 ACCAGAAAACAAGGGCAGTC 58.308 50.000 0.00 0.00 0.00 3.51
1941 2012 2.159179 AACCAGAAAACAAGGGCAGT 57.841 45.000 0.00 0.00 0.00 4.40
1942 2013 3.222603 AGTAACCAGAAAACAAGGGCAG 58.777 45.455 0.00 0.00 0.00 4.85
1943 2014 3.306472 AGTAACCAGAAAACAAGGGCA 57.694 42.857 0.00 0.00 0.00 5.36
1944 2015 3.504906 GGTAGTAACCAGAAAACAAGGGC 59.495 47.826 0.00 0.00 45.98 5.19
1957 2028 0.893447 AGTGGCTCACGGTAGTAACC 59.107 55.000 0.00 0.00 42.95 2.85
1958 2029 1.542915 TCAGTGGCTCACGGTAGTAAC 59.457 52.381 5.65 0.00 39.64 2.50
1959 2030 1.816835 CTCAGTGGCTCACGGTAGTAA 59.183 52.381 5.65 0.00 39.64 2.24
1960 2031 1.460504 CTCAGTGGCTCACGGTAGTA 58.539 55.000 5.65 0.00 39.64 1.82
1961 2032 1.878656 GCTCAGTGGCTCACGGTAGT 61.879 60.000 5.65 0.00 39.64 2.73
1962 2033 1.153745 GCTCAGTGGCTCACGGTAG 60.154 63.158 5.65 3.96 39.64 3.18
1963 2034 1.906333 TGCTCAGTGGCTCACGGTA 60.906 57.895 5.39 0.00 39.64 4.02
1964 2035 3.233980 TGCTCAGTGGCTCACGGT 61.234 61.111 5.39 0.00 39.64 4.83
1965 2036 2.740055 GTGCTCAGTGGCTCACGG 60.740 66.667 5.39 0.41 39.64 4.94
1966 2037 2.721971 AAGGTGCTCAGTGGCTCACG 62.722 60.000 5.39 0.00 39.64 4.35
1967 2038 1.072159 AAGGTGCTCAGTGGCTCAC 59.928 57.895 5.39 4.11 34.10 3.51
1968 2039 1.071987 CAAGGTGCTCAGTGGCTCA 59.928 57.895 5.39 0.00 0.00 4.26
1969 2040 0.536006 AACAAGGTGCTCAGTGGCTC 60.536 55.000 5.39 2.15 0.00 4.70
1970 2041 0.536006 GAACAAGGTGCTCAGTGGCT 60.536 55.000 5.39 0.00 0.00 4.75
1971 2042 0.819259 TGAACAAGGTGCTCAGTGGC 60.819 55.000 0.00 0.00 0.00 5.01
1972 2043 1.334869 GTTGAACAAGGTGCTCAGTGG 59.665 52.381 0.00 0.00 0.00 4.00
1973 2044 2.016318 TGTTGAACAAGGTGCTCAGTG 58.984 47.619 0.00 0.00 0.00 3.66
1974 2045 2.418368 TGTTGAACAAGGTGCTCAGT 57.582 45.000 0.00 0.00 0.00 3.41
1975 2046 2.880268 TCATGTTGAACAAGGTGCTCAG 59.120 45.455 0.62 0.00 0.00 3.35
1976 2047 2.929641 TCATGTTGAACAAGGTGCTCA 58.070 42.857 0.62 0.00 0.00 4.26
1977 2048 3.988379 TTCATGTTGAACAAGGTGCTC 57.012 42.857 0.62 0.00 30.26 4.26
1981 2052 2.223711 GCGGTTTCATGTTGAACAAGGT 60.224 45.455 0.62 0.00 35.89 3.50
1984 2055 1.751351 TGGCGGTTTCATGTTGAACAA 59.249 42.857 0.62 0.00 35.89 2.83
1985 2056 1.393603 TGGCGGTTTCATGTTGAACA 58.606 45.000 0.00 0.00 35.89 3.18
1990 2061 3.219281 AGTTACTTGGCGGTTTCATGTT 58.781 40.909 0.00 0.00 0.00 2.71
1998 2069 1.345063 ACCTGTAGTTACTTGGCGGT 58.655 50.000 0.00 0.00 0.00 5.68
2000 2071 2.478894 CACAACCTGTAGTTACTTGGCG 59.521 50.000 0.00 0.00 36.18 5.69
2009 2080 0.830444 TCCTCGCCACAACCTGTAGT 60.830 55.000 0.00 0.00 0.00 2.73
2073 2144 8.693625 ACACTACTTACACTTATTGGATAGTCC 58.306 37.037 0.00 0.00 36.96 3.85
2098 2169 2.048603 GGAGCAACAGGCCCATCAC 61.049 63.158 0.00 0.00 46.50 3.06
2123 2194 1.475392 GCTGCATCATGCTCTCCTCTT 60.475 52.381 11.84 0.00 45.31 2.85
2125 2196 0.179054 TGCTGCATCATGCTCTCCTC 60.179 55.000 11.84 0.00 45.31 3.71
2159 2230 4.314522 TGTGGAATCTTAAAGCCATGGA 57.685 40.909 18.40 0.00 32.26 3.41
2160 2231 4.706476 TCTTGTGGAATCTTAAAGCCATGG 59.294 41.667 7.63 7.63 32.26 3.66
2162 2233 7.178983 TCAAATCTTGTGGAATCTTAAAGCCAT 59.821 33.333 0.00 0.00 32.26 4.40
2171 2242 5.003096 ACCCTTCAAATCTTGTGGAATCT 57.997 39.130 0.00 0.00 0.00 2.40
2202 2273 2.172851 ACTTTTCCCGTATGCGTTCA 57.827 45.000 1.69 0.00 36.15 3.18
2212 2283 8.240682 TGTGTATGATAATTTCAACTTTTCCCG 58.759 33.333 0.00 0.00 38.03 5.14
2226 2297 1.270625 CGGGGCCGTGTGTATGATAAT 60.271 52.381 0.00 0.00 34.35 1.28
2240 2311 3.451894 CCTCAACATTGCGGGGCC 61.452 66.667 0.00 0.00 29.52 5.80
2241 2312 2.361104 TCCTCAACATTGCGGGGC 60.361 61.111 0.94 0.00 33.91 5.80
2242 2313 1.750399 CCTCCTCAACATTGCGGGG 60.750 63.158 0.94 0.00 33.91 5.73
2245 2316 0.250234 TCCTCCTCCTCAACATTGCG 59.750 55.000 0.00 0.00 0.00 4.85
2250 2321 3.169099 CTCTTCTTCCTCCTCCTCAACA 58.831 50.000 0.00 0.00 0.00 3.33
2254 2325 1.289530 TCCCTCTTCTTCCTCCTCCTC 59.710 57.143 0.00 0.00 0.00 3.71
2260 2331 4.093743 ACTTCTTCTCCCTCTTCTTCCTC 58.906 47.826 0.00 0.00 0.00 3.71
2261 2332 4.140575 ACTTCTTCTCCCTCTTCTTCCT 57.859 45.455 0.00 0.00 0.00 3.36
2262 2333 4.041075 ACAACTTCTTCTCCCTCTTCTTCC 59.959 45.833 0.00 0.00 0.00 3.46
2263 2334 4.994217 CACAACTTCTTCTCCCTCTTCTTC 59.006 45.833 0.00 0.00 0.00 2.87
2264 2335 4.745172 GCACAACTTCTTCTCCCTCTTCTT 60.745 45.833 0.00 0.00 0.00 2.52
2265 2336 3.244387 GCACAACTTCTTCTCCCTCTTCT 60.244 47.826 0.00 0.00 0.00 2.85
2266 2337 3.070748 GCACAACTTCTTCTCCCTCTTC 58.929 50.000 0.00 0.00 0.00 2.87
2267 2338 2.439507 TGCACAACTTCTTCTCCCTCTT 59.560 45.455 0.00 0.00 0.00 2.85
2268 2339 2.038295 CTGCACAACTTCTTCTCCCTCT 59.962 50.000 0.00 0.00 0.00 3.69
2269 2340 2.224402 ACTGCACAACTTCTTCTCCCTC 60.224 50.000 0.00 0.00 0.00 4.30
2270 2341 1.771255 ACTGCACAACTTCTTCTCCCT 59.229 47.619 0.00 0.00 0.00 4.20
2271 2342 2.262423 ACTGCACAACTTCTTCTCCC 57.738 50.000 0.00 0.00 0.00 4.30
2272 2343 2.221981 CGAACTGCACAACTTCTTCTCC 59.778 50.000 0.00 0.00 0.00 3.71
2273 2344 3.123804 TCGAACTGCACAACTTCTTCTC 58.876 45.455 0.00 0.00 0.00 2.87
2274 2345 3.179443 TCGAACTGCACAACTTCTTCT 57.821 42.857 0.00 0.00 0.00 2.85
2292 2363 3.309138 CCTCTTGCAACTCATCAGAATCG 59.691 47.826 0.00 0.00 0.00 3.34
2296 2367 2.634453 TGACCTCTTGCAACTCATCAGA 59.366 45.455 0.00 0.00 0.00 3.27
2314 2385 3.004106 GCCATGTGCCAGATAAGAATGAC 59.996 47.826 0.00 0.00 0.00 3.06
2360 2431 4.015084 AGATTCTTCATCTGCAAAGGTGG 58.985 43.478 0.00 0.00 41.13 4.61
2416 2487 2.618053 CACGAGGAACACCAGGTAATC 58.382 52.381 0.00 0.00 0.00 1.75
2418 2489 0.682852 CCACGAGGAACACCAGGTAA 59.317 55.000 0.00 0.00 36.89 2.85
2440 2511 0.254747 GGTAGCATGCTGGGGTGTAA 59.745 55.000 30.42 4.21 0.00 2.41
2443 2514 2.514592 CGGTAGCATGCTGGGGTG 60.515 66.667 30.42 11.24 0.00 4.61
2444 2515 3.797353 CCGGTAGCATGCTGGGGT 61.797 66.667 30.42 5.99 44.37 4.95
2450 2521 0.874607 CTTACGGACCGGTAGCATGC 60.875 60.000 20.00 10.51 0.00 4.06
2484 2555 4.997565 TCAACTCTTTGCTGGTTTCTTTG 58.002 39.130 0.00 0.00 32.17 2.77
2485 2556 5.394553 CCTTCAACTCTTTGCTGGTTTCTTT 60.395 40.000 0.00 0.00 32.17 2.52
2495 2566 5.591099 TCAACAATTCCTTCAACTCTTTGC 58.409 37.500 0.00 0.00 32.17 3.68
2501 2572 5.652014 TCAACACTCAACAATTCCTTCAACT 59.348 36.000 0.00 0.00 0.00 3.16
2511 2582 4.432712 GCCTGTTTTCAACACTCAACAAT 58.567 39.130 0.00 0.00 36.25 2.71
2513 2584 2.165437 GGCCTGTTTTCAACACTCAACA 59.835 45.455 0.00 0.00 36.25 3.33
2514 2585 2.427095 AGGCCTGTTTTCAACACTCAAC 59.573 45.455 3.11 0.00 36.25 3.18
2522 2593 2.622942 CAACTAGCAGGCCTGTTTTCAA 59.377 45.455 32.81 12.01 0.00 2.69
2563 2634 5.413499 CATTTGTTCCAGGATAAAGGCAAG 58.587 41.667 0.00 0.00 0.00 4.01
2583 2654 4.455877 CCGTTCAAAACTAGCTTCTCCATT 59.544 41.667 0.00 0.00 0.00 3.16
2588 2659 2.846193 TGCCGTTCAAAACTAGCTTCT 58.154 42.857 0.00 0.00 31.83 2.85
2590 2661 3.305335 CCATTGCCGTTCAAAACTAGCTT 60.305 43.478 0.00 0.00 38.34 3.74
2592 2663 2.227865 TCCATTGCCGTTCAAAACTAGC 59.772 45.455 0.00 0.00 38.34 3.42
2593 2664 3.751175 TCTCCATTGCCGTTCAAAACTAG 59.249 43.478 0.00 0.00 38.34 2.57
2594 2665 3.745799 TCTCCATTGCCGTTCAAAACTA 58.254 40.909 0.00 0.00 38.34 2.24
2595 2666 2.582052 TCTCCATTGCCGTTCAAAACT 58.418 42.857 0.00 0.00 38.34 2.66
2596 2667 3.244976 CATCTCCATTGCCGTTCAAAAC 58.755 45.455 0.00 0.00 38.34 2.43
2597 2668 2.230992 CCATCTCCATTGCCGTTCAAAA 59.769 45.455 0.00 0.00 38.34 2.44
2598 2669 1.818060 CCATCTCCATTGCCGTTCAAA 59.182 47.619 0.00 0.00 38.34 2.69
2599 2670 1.462616 CCATCTCCATTGCCGTTCAA 58.537 50.000 0.00 0.00 39.32 2.69
2600 2671 1.031571 GCCATCTCCATTGCCGTTCA 61.032 55.000 0.00 0.00 0.00 3.18
2601 2672 1.031571 TGCCATCTCCATTGCCGTTC 61.032 55.000 0.00 0.00 0.00 3.95
2602 2673 1.001020 TGCCATCTCCATTGCCGTT 60.001 52.632 0.00 0.00 0.00 4.44
2603 2674 1.452651 CTGCCATCTCCATTGCCGT 60.453 57.895 0.00 0.00 0.00 5.68
2604 2675 0.749091 TTCTGCCATCTCCATTGCCG 60.749 55.000 0.00 0.00 0.00 5.69
2605 2676 1.477553 TTTCTGCCATCTCCATTGCC 58.522 50.000 0.00 0.00 0.00 4.52
2606 2677 3.887716 ACTATTTCTGCCATCTCCATTGC 59.112 43.478 0.00 0.00 0.00 3.56
2607 2678 6.294473 AGTACTATTTCTGCCATCTCCATTG 58.706 40.000 0.00 0.00 0.00 2.82
2608 2679 6.506538 AGTACTATTTCTGCCATCTCCATT 57.493 37.500 0.00 0.00 0.00 3.16
2609 2680 6.784969 ACTAGTACTATTTCTGCCATCTCCAT 59.215 38.462 2.33 0.00 0.00 3.41
2610 2681 6.136857 ACTAGTACTATTTCTGCCATCTCCA 58.863 40.000 2.33 0.00 0.00 3.86
2611 2682 6.658188 ACTAGTACTATTTCTGCCATCTCC 57.342 41.667 2.33 0.00 0.00 3.71
2612 2683 7.040340 TGCTACTAGTACTATTTCTGCCATCTC 60.040 40.741 2.33 0.00 0.00 2.75
2613 2684 6.778069 TGCTACTAGTACTATTTCTGCCATCT 59.222 38.462 2.33 0.00 0.00 2.90
2614 2685 6.982852 TGCTACTAGTACTATTTCTGCCATC 58.017 40.000 2.33 0.00 0.00 3.51
2615 2686 6.978674 TGCTACTAGTACTATTTCTGCCAT 57.021 37.500 2.33 0.00 0.00 4.40
2616 2687 6.978674 ATGCTACTAGTACTATTTCTGCCA 57.021 37.500 2.33 0.00 0.00 4.92
2617 2688 7.210873 ACAATGCTACTAGTACTATTTCTGCC 58.789 38.462 2.33 0.00 0.00 4.85
2618 2689 7.382759 GGACAATGCTACTAGTACTATTTCTGC 59.617 40.741 2.33 5.07 0.00 4.26
2619 2690 8.634444 AGGACAATGCTACTAGTACTATTTCTG 58.366 37.037 2.33 0.00 0.00 3.02
2620 2691 8.634444 CAGGACAATGCTACTAGTACTATTTCT 58.366 37.037 2.33 0.00 0.00 2.52
2643 2714 4.393062 GCATATTGATAACCATCCGACAGG 59.607 45.833 0.00 0.00 39.46 4.00
2656 2727 2.928801 AGCACACGGGCATATTGATA 57.071 45.000 0.00 0.00 35.83 2.15
2668 2739 3.848019 GCAAAACATCTTCATAGCACACG 59.152 43.478 0.00 0.00 0.00 4.49
2677 2748 2.368221 CCCCTTTGGCAAAACATCTTCA 59.632 45.455 14.43 0.00 0.00 3.02
2764 2835 6.183361 ACCAACTCAGAGTAAGAACACAATCT 60.183 38.462 2.64 0.00 0.00 2.40
2797 2868 7.868775 TCAAAGATGAGATTCAACAGTTCTTG 58.131 34.615 0.00 0.00 0.00 3.02
2832 2906 2.864343 GGATGCATTCATGAGCAAAAGC 59.136 45.455 13.02 0.00 44.88 3.51
2850 2924 2.492025 TCCCTGCTAGACCATTTGGAT 58.508 47.619 3.01 0.00 38.94 3.41
2857 2931 0.044092 TGGGAATCCCTGCTAGACCA 59.956 55.000 20.55 0.00 45.70 4.02
2893 2967 2.201708 TTACGAGGTCACCGCCACA 61.202 57.895 0.00 0.00 0.00 4.17
2894 2968 1.735559 GTTACGAGGTCACCGCCAC 60.736 63.158 0.00 0.00 0.00 5.01
2901 2975 1.068125 CACACGATGGTTACGAGGTCA 60.068 52.381 0.00 0.00 34.70 4.02
2916 2990 4.553351 GCATGTATTGTCATGATCCACACG 60.553 45.833 0.00 0.00 45.41 4.49
2976 3050 7.916914 ACCAACGAGCTTTACTAATTAACAT 57.083 32.000 0.00 0.00 0.00 2.71
2979 3053 9.439500 AACATACCAACGAGCTTTACTAATTAA 57.561 29.630 0.00 0.00 0.00 1.40
3020 3100 2.587777 AGAGAAGGGAGATAGGGACACA 59.412 50.000 0.00 0.00 0.00 3.72
3038 3118 7.886338 AGTAGCCAATTCAAAAAGGTAAAGAG 58.114 34.615 0.00 0.00 0.00 2.85
3039 3119 7.504238 TGAGTAGCCAATTCAAAAAGGTAAAGA 59.496 33.333 0.00 0.00 0.00 2.52
3040 3120 7.657336 TGAGTAGCCAATTCAAAAAGGTAAAG 58.343 34.615 0.00 0.00 0.00 1.85
3041 3121 7.589958 TGAGTAGCCAATTCAAAAAGGTAAA 57.410 32.000 0.00 0.00 0.00 2.01
3042 3122 7.232534 ACATGAGTAGCCAATTCAAAAAGGTAA 59.767 33.333 0.00 0.00 0.00 2.85
3043 3123 6.719370 ACATGAGTAGCCAATTCAAAAAGGTA 59.281 34.615 0.00 0.00 0.00 3.08
3044 3124 5.539955 ACATGAGTAGCCAATTCAAAAAGGT 59.460 36.000 0.00 0.00 0.00 3.50
3045 3125 5.865552 CACATGAGTAGCCAATTCAAAAAGG 59.134 40.000 0.00 0.00 0.00 3.11
3046 3126 6.449698 ACACATGAGTAGCCAATTCAAAAAG 58.550 36.000 0.00 0.00 0.00 2.27
3047 3127 6.403866 ACACATGAGTAGCCAATTCAAAAA 57.596 33.333 0.00 0.00 0.00 1.94
3048 3128 6.403866 AACACATGAGTAGCCAATTCAAAA 57.596 33.333 0.00 0.00 0.00 2.44
3053 3133 7.285566 AGATCATAACACATGAGTAGCCAATT 58.714 34.615 0.00 0.00 0.00 2.32
3073 3153 9.820229 GAACAAAAATACAAATACGTGAGATCA 57.180 29.630 0.00 0.00 0.00 2.92
3074 3154 9.820229 TGAACAAAAATACAAATACGTGAGATC 57.180 29.630 0.00 0.00 0.00 2.75
3075 3155 9.607285 GTGAACAAAAATACAAATACGTGAGAT 57.393 29.630 0.00 0.00 0.00 2.75
3076 3156 8.832521 AGTGAACAAAAATACAAATACGTGAGA 58.167 29.630 0.00 0.00 0.00 3.27
3077 3157 8.891928 CAGTGAACAAAAATACAAATACGTGAG 58.108 33.333 0.00 0.00 0.00 3.51
3078 3158 8.399425 ACAGTGAACAAAAATACAAATACGTGA 58.601 29.630 0.00 0.00 0.00 4.35
3079 3159 8.555166 ACAGTGAACAAAAATACAAATACGTG 57.445 30.769 0.00 0.00 0.00 4.49
3080 3160 9.575783 AAACAGTGAACAAAAATACAAATACGT 57.424 25.926 0.00 0.00 0.00 3.57
3130 3210 3.753294 AGACTTACACTGACAACCTGG 57.247 47.619 0.00 0.00 0.00 4.45
3150 3230 0.907486 CCTGACATGGAGGAGCAGAA 59.093 55.000 7.16 0.00 31.48 3.02
3166 3246 3.118112 ACAATCCTGAATGTAGCCTCCTG 60.118 47.826 0.00 0.00 0.00 3.86
3217 3297 6.530567 CAACATGCAAAGCACTAAATTCATG 58.469 36.000 0.00 0.00 43.04 3.07
3236 3316 0.320771 GTCCGTCACTCCAGCAACAT 60.321 55.000 0.00 0.00 0.00 2.71
3239 3319 0.179234 TTTGTCCGTCACTCCAGCAA 59.821 50.000 0.00 0.00 0.00 3.91
3248 3328 2.290641 ACCCTATGCAATTTGTCCGTCA 60.291 45.455 0.00 0.00 0.00 4.35
3252 3332 4.338400 GGAACTACCCTATGCAATTTGTCC 59.662 45.833 0.00 0.00 0.00 4.02
3307 3387 3.951663 ACTAACATTGTTACTCCCTGGC 58.048 45.455 5.14 0.00 0.00 4.85
3308 3388 7.827236 TGAATTACTAACATTGTTACTCCCTGG 59.173 37.037 5.14 0.00 0.00 4.45
3309 3389 8.786826 TGAATTACTAACATTGTTACTCCCTG 57.213 34.615 5.14 0.00 0.00 4.45
3310 3390 9.975218 AATGAATTACTAACATTGTTACTCCCT 57.025 29.630 5.14 0.00 33.79 4.20
3468 3553 8.343366 TCACTAGCTATAGTAGAAAATGTCACG 58.657 37.037 13.16 0.00 40.38 4.35
3531 3616 0.391263 AAATCGTTCTCCACCGCTCC 60.391 55.000 0.00 0.00 0.00 4.70
3545 3630 2.299297 AGTAAGCGGGATAGGGAAATCG 59.701 50.000 0.00 0.00 0.00 3.34
3595 3680 2.818432 AGTTGTCTACATCGTCGGAACT 59.182 45.455 0.00 0.00 0.00 3.01
3600 3685 3.043586 GCCATAGTTGTCTACATCGTCG 58.956 50.000 0.00 0.00 0.00 5.12
3644 3729 1.092921 TGTGACTTGTGCCGGTTCAC 61.093 55.000 1.90 3.98 37.48 3.18
3645 3730 1.092921 GTGTGACTTGTGCCGGTTCA 61.093 55.000 1.90 0.00 0.00 3.18
3646 3731 1.092921 TGTGTGACTTGTGCCGGTTC 61.093 55.000 1.90 0.00 0.00 3.62
3647 3732 0.678366 TTGTGTGACTTGTGCCGGTT 60.678 50.000 1.90 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.