Multiple sequence alignment - TraesCS5A01G553900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G553900 chr5A 100.000 4963 0 0 1 4963 706054825 706059787 0.000000e+00 9166.0
1 TraesCS5A01G553900 chr5A 83.929 336 47 7 4471 4802 546203613 546203945 1.040000e-81 315.0
2 TraesCS5A01G553900 chr5A 80.978 368 55 8 3939 4303 705955788 705955433 1.360000e-70 278.0
3 TraesCS5A01G553900 chr5A 92.784 97 7 0 4198 4294 609051999 609052095 1.860000e-29 141.0
4 TraesCS5A01G553900 chr5A 84.058 69 10 1 568 635 42699300 42699232 1.150000e-06 65.8
5 TraesCS5A01G553900 chr1B 86.848 4349 376 92 4 4247 49250149 49245892 0.000000e+00 4682.0
6 TraesCS5A01G553900 chr1B 79.401 534 98 12 3072 3598 374869007 374868479 2.820000e-97 366.0
7 TraesCS5A01G553900 chr1B 85.373 335 43 4 2387 2717 34775318 34775650 4.760000e-90 342.0
8 TraesCS5A01G553900 chr1B 88.158 228 18 3 1393 1620 374874678 374874460 3.810000e-66 263.0
9 TraesCS5A01G553900 chr1B 89.474 57 6 0 567 623 388167615 388167559 6.890000e-09 73.1
10 TraesCS5A01G553900 chrUn 86.667 1740 176 31 2235 3935 134303172 134301450 0.000000e+00 1877.0
11 TraesCS5A01G553900 chrUn 86.792 1537 114 29 177 1641 134305260 134303741 0.000000e+00 1631.0
12 TraesCS5A01G553900 chrUn 84.480 741 58 23 3933 4649 134301306 134300599 0.000000e+00 678.0
13 TraesCS5A01G553900 chrUn 85.428 549 51 10 3201 3737 108418818 108418287 1.220000e-150 544.0
14 TraesCS5A01G553900 chrUn 90.283 247 10 4 1756 1994 134303703 134303463 1.340000e-80 311.0
15 TraesCS5A01G553900 chrUn 81.593 364 50 9 3944 4303 108249582 108249932 8.130000e-73 285.0
16 TraesCS5A01G553900 chrUn 94.624 186 7 2 1992 2177 134303369 134303187 8.130000e-73 285.0
17 TraesCS5A01G553900 chrUn 91.000 200 14 3 4734 4930 134300609 134300411 2.950000e-67 267.0
18 TraesCS5A01G553900 chrUn 80.952 189 17 8 3764 3935 108418292 108418106 1.120000e-26 132.0
19 TraesCS5A01G553900 chrUn 88.608 79 9 0 984 1062 134305607 134305529 4.090000e-16 97.1
20 TraesCS5A01G553900 chrUn 100.000 48 0 0 3175 3222 108301863 108301910 6.840000e-14 89.8
21 TraesCS5A01G553900 chrUn 84.337 83 12 1 545 627 104800877 104800796 4.120000e-11 80.5
22 TraesCS5A01G553900 chr4B 84.120 1631 146 46 1 1557 666592395 666590804 0.000000e+00 1472.0
23 TraesCS5A01G553900 chr4B 81.646 741 114 16 3002 3733 261682179 261682906 3.310000e-166 595.0
24 TraesCS5A01G553900 chr4B 83.765 579 85 5 2999 3575 261282378 261282949 1.570000e-149 540.0
25 TraesCS5A01G553900 chr4B 86.835 395 50 2 124 516 666590807 666590413 1.640000e-119 440.0
26 TraesCS5A01G553900 chr4B 90.816 98 9 0 3698 3795 665960149 665960052 1.120000e-26 132.0
27 TraesCS5A01G553900 chr4B 79.426 209 21 11 869 1062 666592723 666592522 1.450000e-25 128.0
28 TraesCS5A01G553900 chr1D 86.846 631 64 13 1992 2620 233447597 233446984 0.000000e+00 688.0
29 TraesCS5A01G553900 chr1D 80.104 769 97 29 1136 1878 233448592 233447854 5.690000e-144 521.0
30 TraesCS5A01G553900 chr1D 80.187 535 93 12 3072 3598 275625098 275624569 6.020000e-104 388.0
31 TraesCS5A01G553900 chr1D 79.104 402 52 18 1232 1620 275627031 275626649 1.070000e-61 248.0
32 TraesCS5A01G553900 chr1D 84.848 132 20 0 2806 2937 443183632 443183763 3.120000e-27 134.0
33 TraesCS5A01G553900 chr1D 85.714 56 3 3 776 831 275627630 275627580 2.000000e-03 54.7
34 TraesCS5A01G553900 chr1D 85.714 56 3 3 776 831 275627982 275627932 2.000000e-03 54.7
35 TraesCS5A01G553900 chr7D 87.137 482 47 5 2495 2976 45888253 45887787 2.630000e-147 532.0
36 TraesCS5A01G553900 chr7D 88.084 428 33 9 3079 3503 45886974 45886562 4.460000e-135 492.0
37 TraesCS5A01G553900 chr7D 83.673 294 43 5 4496 4788 52698415 52698126 6.330000e-69 272.0
38 TraesCS5A01G553900 chr7D 83.621 116 15 2 4805 4916 45885466 45885351 6.790000e-19 106.0
39 TraesCS5A01G553900 chr1A 80.303 528 96 8 3072 3594 347924909 347924385 4.660000e-105 392.0
40 TraesCS5A01G553900 chr1A 80.000 395 47 15 1239 1620 347926787 347926412 3.810000e-66 263.0
41 TraesCS5A01G553900 chr1A 85.714 56 3 3 776 831 347927395 347927345 2.000000e-03 54.7
42 TraesCS5A01G553900 chr4D 85.970 335 41 4 2387 2717 216528800 216529132 2.200000e-93 353.0
43 TraesCS5A01G553900 chr2D 85.970 335 41 4 2387 2717 287839077 287838745 2.200000e-93 353.0
44 TraesCS5A01G553900 chr2D 85.294 340 44 5 4468 4803 87248992 87248655 3.680000e-91 346.0
45 TraesCS5A01G553900 chr2D 88.462 52 6 0 570 621 324280807 324280756 4.150000e-06 63.9
46 TraesCS5A01G553900 chr7A 85.672 335 42 4 2387 2717 40779693 40780025 1.020000e-91 348.0
47 TraesCS5A01G553900 chr7A 85.460 337 41 7 4473 4807 55425112 55425442 1.320000e-90 344.0
48 TraesCS5A01G553900 chr6D 85.460 337 41 6 2387 2717 393649490 393649824 1.320000e-90 344.0
49 TraesCS5A01G553900 chr5D 85.373 335 43 4 2387 2717 443808176 443807844 4.760000e-90 342.0
50 TraesCS5A01G553900 chr2B 84.548 343 41 6 4468 4804 139806632 139806296 3.700000e-86 329.0
51 TraesCS5A01G553900 chr2B 88.136 59 7 0 570 628 133699218 133699276 2.480000e-08 71.3
52 TraesCS5A01G553900 chr2B 88.679 53 6 0 569 621 393021111 393021059 1.150000e-06 65.8
53 TraesCS5A01G553900 chr7B 82.421 347 40 9 4471 4813 701154952 701154623 2.920000e-72 283.0
54 TraesCS5A01G553900 chr7B 81.183 186 22 6 4554 4727 94607062 94607246 2.410000e-28 137.0
55 TraesCS5A01G553900 chr3D 81.440 361 47 12 4464 4814 66335067 66335417 1.360000e-70 278.0
56 TraesCS5A01G553900 chr3D 83.908 174 28 0 1705 1878 108824699 108824872 3.070000e-37 167.0
57 TraesCS5A01G553900 chr3D 82.667 75 13 0 542 616 104031433 104031359 3.210000e-07 67.6
58 TraesCS5A01G553900 chr3A 82.500 280 27 6 4516 4794 699981143 699981401 5.000000e-55 226.0
59 TraesCS5A01G553900 chr2A 83.750 80 11 2 567 644 29831932 29831853 1.920000e-09 75.0
60 TraesCS5A01G553900 chr2A 89.474 57 6 0 542 598 1645731 1645675 6.890000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G553900 chr5A 706054825 706059787 4962 False 9166.000000 9166 100.000000 1 4963 1 chr5A.!!$F3 4962
1 TraesCS5A01G553900 chr1B 49245892 49250149 4257 True 4682.000000 4682 86.848000 4 4247 1 chr1B.!!$R1 4243
2 TraesCS5A01G553900 chr1B 374868479 374869007 528 True 366.000000 366 79.401000 3072 3598 1 chr1B.!!$R2 526
3 TraesCS5A01G553900 chrUn 134300411 134305607 5196 True 735.157143 1877 88.922000 177 4930 7 chrUn.!!$R3 4753
4 TraesCS5A01G553900 chrUn 108418106 108418818 712 True 338.000000 544 83.190000 3201 3935 2 chrUn.!!$R2 734
5 TraesCS5A01G553900 chr4B 666590413 666592723 2310 True 680.000000 1472 83.460333 1 1557 3 chr4B.!!$R2 1556
6 TraesCS5A01G553900 chr4B 261682179 261682906 727 False 595.000000 595 81.646000 3002 3733 1 chr4B.!!$F2 731
7 TraesCS5A01G553900 chr4B 261282378 261282949 571 False 540.000000 540 83.765000 2999 3575 1 chr4B.!!$F1 576
8 TraesCS5A01G553900 chr1D 233446984 233448592 1608 True 604.500000 688 83.475000 1136 2620 2 chr1D.!!$R1 1484
9 TraesCS5A01G553900 chr7D 45885351 45888253 2902 True 376.666667 532 86.280667 2495 4916 3 chr7D.!!$R2 2421
10 TraesCS5A01G553900 chr1A 347924385 347927395 3010 True 236.566667 392 82.005667 776 3594 3 chr1A.!!$R1 2818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 496 0.031857 TTACCGCTCCAAACGAACGA 59.968 50.0 0.14 0.0 31.53 3.85 F
1362 1922 0.036765 CGACGGGATCCCAAGACAAA 60.037 55.0 30.42 0.0 35.37 2.83 F
2011 2850 0.804989 GGGAGAAATTGCCAGACACG 59.195 55.0 0.00 0.0 37.22 4.49 F
3228 4852 0.464916 ACCCTTCCACCGTGTTGTTC 60.465 55.0 0.00 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 2382 0.678048 GTCACCTGGATGCAGGAACC 60.678 60.000 36.95 19.86 45.00 3.62 R
2636 3484 0.031585 TTGTTACTCGCGCTCACTGT 59.968 50.000 5.56 0.00 0.00 3.55 R
3368 4994 1.142778 GAGCAGAGCTTACGCGGAAG 61.143 60.000 26.95 26.95 39.88 3.46 R
4173 6329 1.324435 CGTGGTCATACATTCGCACAG 59.676 52.381 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 369 0.032615 TGCTATTGCCGGGGGAAAAT 60.033 50.000 2.18 0.00 38.71 1.82
54 383 1.673920 GGAAAATGCTAAATCCGCCGA 59.326 47.619 0.00 0.00 0.00 5.54
55 384 2.293399 GGAAAATGCTAAATCCGCCGAT 59.707 45.455 0.00 0.00 0.00 4.18
65 394 4.175337 CCGCCGATGTGGGACCAT 62.175 66.667 0.00 0.00 38.56 3.55
83 412 3.326588 ACCATCAACCTTGTACTAGCACA 59.673 43.478 0.00 0.00 0.00 4.57
84 413 3.684788 CCATCAACCTTGTACTAGCACAC 59.315 47.826 0.00 0.00 0.00 3.82
100 429 2.575532 CACACATCTGTCCCACTTGTT 58.424 47.619 0.00 0.00 0.00 2.83
101 430 3.738982 CACACATCTGTCCCACTTGTTA 58.261 45.455 0.00 0.00 0.00 2.41
135 464 2.637025 CGACAACCGCCAACCAAG 59.363 61.111 0.00 0.00 0.00 3.61
137 466 1.527380 GACAACCGCCAACCAAGGA 60.527 57.895 0.00 0.00 0.00 3.36
139 468 1.106944 ACAACCGCCAACCAAGGAAG 61.107 55.000 0.00 0.00 0.00 3.46
140 469 2.200337 AACCGCCAACCAAGGAAGC 61.200 57.895 0.00 0.00 0.00 3.86
141 470 2.597217 CCGCCAACCAAGGAAGCA 60.597 61.111 0.00 0.00 0.00 3.91
142 471 1.978617 CCGCCAACCAAGGAAGCAT 60.979 57.895 0.00 0.00 0.00 3.79
143 472 0.679640 CCGCCAACCAAGGAAGCATA 60.680 55.000 0.00 0.00 0.00 3.14
145 474 1.133025 CGCCAACCAAGGAAGCATAAG 59.867 52.381 0.00 0.00 0.00 1.73
147 476 1.478105 CCAACCAAGGAAGCATAAGGC 59.522 52.381 0.00 0.00 45.30 4.35
158 487 0.179056 GCATAAGGCTTACCGCTCCA 60.179 55.000 18.49 0.00 42.76 3.86
161 490 2.103537 TAAGGCTTACCGCTCCAAAC 57.896 50.000 2.04 0.00 42.76 2.93
162 491 0.953960 AAGGCTTACCGCTCCAAACG 60.954 55.000 0.00 0.00 42.76 3.60
163 492 1.375013 GGCTTACCGCTCCAAACGA 60.375 57.895 0.00 0.00 39.13 3.85
165 494 0.165295 GCTTACCGCTCCAAACGAAC 59.835 55.000 0.00 0.00 35.14 3.95
166 495 0.437295 CTTACCGCTCCAAACGAACG 59.563 55.000 0.00 0.00 0.00 3.95
167 496 0.031857 TTACCGCTCCAAACGAACGA 59.968 50.000 0.14 0.00 31.53 3.85
168 497 0.244450 TACCGCTCCAAACGAACGAT 59.756 50.000 0.14 0.00 31.53 3.73
169 498 0.244450 ACCGCTCCAAACGAACGATA 59.756 50.000 0.14 0.00 31.53 2.92
171 500 1.323534 CCGCTCCAAACGAACGATAAG 59.676 52.381 0.14 0.00 31.53 1.73
172 501 1.266891 CGCTCCAAACGAACGATAAGC 60.267 52.381 0.14 2.32 31.53 3.09
173 502 1.730064 GCTCCAAACGAACGATAAGCA 59.270 47.619 0.14 0.00 0.00 3.91
174 503 2.222819 GCTCCAAACGAACGATAAGCAG 60.223 50.000 0.14 0.00 0.00 4.24
176 505 1.202031 CCAAACGAACGATAAGCAGGC 60.202 52.381 0.14 0.00 0.00 4.85
177 506 0.719465 AAACGAACGATAAGCAGGCG 59.281 50.000 0.14 0.00 0.00 5.52
178 507 0.108992 AACGAACGATAAGCAGGCGA 60.109 50.000 0.14 0.00 0.00 5.54
179 508 0.525668 ACGAACGATAAGCAGGCGAG 60.526 55.000 0.14 0.00 0.00 5.03
194 524 4.166888 GAGGGCATCGGCTCAGCA 62.167 66.667 0.00 0.00 45.55 4.41
211 541 2.155194 CAGCGTCGCCGAGAAGAAG 61.155 63.158 14.86 0.00 35.63 2.85
221 551 0.388649 CGAGAAGAAGGTCACCGTGG 60.389 60.000 0.00 0.00 0.00 4.94
235 565 1.185618 CCGTGGTGAGGAAGAGACCA 61.186 60.000 0.00 0.00 37.43 4.02
237 567 1.337260 CGTGGTGAGGAAGAGACCAAG 60.337 57.143 0.00 0.00 41.43 3.61
253 583 1.339631 CCAAGGCCACCTTATTCGACA 60.340 52.381 5.01 0.00 42.67 4.35
263 593 4.333649 CACCTTATTCGACACAGCATCAAT 59.666 41.667 0.00 0.00 0.00 2.57
266 596 5.469373 TTATTCGACACAGCATCAATGTC 57.531 39.130 0.00 0.00 39.50 3.06
268 598 2.068519 TCGACACAGCATCAATGTCAC 58.931 47.619 4.65 0.00 42.37 3.67
339 670 1.611936 GGAAGAGAAACAGGAGCCCAC 60.612 57.143 0.00 0.00 0.00 4.61
376 707 3.073735 AGCAGCGGACAGAGAGGG 61.074 66.667 0.00 0.00 0.00 4.30
416 747 1.302511 GTCCCAGAGCGGCAGAAAA 60.303 57.895 1.45 0.00 0.00 2.29
470 801 6.374333 GTGAGAGCAGTGAATATGGGTTAAAA 59.626 38.462 0.00 0.00 0.00 1.52
516 848 1.339929 AGAAATCGGGGTGTGTTTTGC 59.660 47.619 0.00 0.00 0.00 3.68
519 856 1.805428 ATCGGGGTGTGTTTTGCTGC 61.805 55.000 0.00 0.00 0.00 5.25
528 865 2.233431 TGTGTTTTGCTGCCTCAACTTT 59.767 40.909 0.00 0.00 0.00 2.66
564 908 5.978322 GTCCCGTTGACTACAAAGATATCTC 59.022 44.000 5.51 0.00 41.03 2.75
565 909 5.655090 TCCCGTTGACTACAAAGATATCTCA 59.345 40.000 5.51 0.00 37.61 3.27
596 940 5.879237 TCGTCAATCTTAAAATGATGTGCC 58.121 37.500 0.00 0.00 33.02 5.01
604 948 1.089920 AAATGATGTGCCGACTCAGC 58.910 50.000 0.00 0.00 0.00 4.26
607 951 1.520342 GATGTGCCGACTCAGCCTC 60.520 63.158 0.00 0.00 0.00 4.70
610 954 2.283173 TGCCGACTCAGCCTCTCA 60.283 61.111 0.00 0.00 0.00 3.27
611 955 1.683707 TGCCGACTCAGCCTCTCAT 60.684 57.895 0.00 0.00 0.00 2.90
634 1006 2.151202 GTGTTCATAGGGGTGTGTGTG 58.849 52.381 0.00 0.00 0.00 3.82
639 1011 3.178046 TCATAGGGGTGTGTGTGTATGT 58.822 45.455 0.00 0.00 0.00 2.29
642 1014 1.573829 GGGGTGTGTGTGTATGTGCG 61.574 60.000 0.00 0.00 0.00 5.34
643 1015 0.882927 GGGTGTGTGTGTATGTGCGT 60.883 55.000 0.00 0.00 0.00 5.24
644 1016 1.605968 GGGTGTGTGTGTATGTGCGTA 60.606 52.381 0.00 0.00 0.00 4.42
645 1017 2.343101 GGTGTGTGTGTATGTGCGTAT 58.657 47.619 0.00 0.00 0.00 3.06
648 1020 5.283294 GGTGTGTGTGTATGTGCGTATATA 58.717 41.667 0.00 0.00 0.00 0.86
658 1030 8.066000 GTGTATGTGCGTATATATATGAGCGTA 58.934 37.037 14.94 9.12 0.00 4.42
664 1036 9.263626 GTGCGTATATATATGAGCGTATGTATC 57.736 37.037 14.94 0.00 0.00 2.24
741 1120 2.158784 GGAGCTCATGGAGATGCTCTTT 60.159 50.000 17.19 0.00 42.31 2.52
742 1121 3.070734 GGAGCTCATGGAGATGCTCTTTA 59.929 47.826 17.19 0.00 42.31 1.85
835 1214 2.514013 CGGCGACCGTGATGCTTAC 61.514 63.158 0.00 0.00 42.73 2.34
840 1219 1.402325 CGACCGTGATGCTTACACAGA 60.402 52.381 0.00 0.00 38.04 3.41
842 1221 3.262420 GACCGTGATGCTTACACAGATT 58.738 45.455 0.00 0.00 38.04 2.40
843 1222 3.674997 ACCGTGATGCTTACACAGATTT 58.325 40.909 0.00 0.00 38.04 2.17
1298 1858 0.178861 AGGAGGCCTTTGAGGGAGAA 60.179 55.000 6.77 0.00 35.37 2.87
1306 1866 2.291217 CCTTTGAGGGAGAAAGGGGAAG 60.291 54.545 0.00 0.00 44.00 3.46
1307 1867 0.698818 TTGAGGGAGAAAGGGGAAGC 59.301 55.000 0.00 0.00 0.00 3.86
1308 1868 1.208165 TGAGGGAGAAAGGGGAAGCC 61.208 60.000 0.00 0.00 0.00 4.35
1362 1922 0.036765 CGACGGGATCCCAAGACAAA 60.037 55.000 30.42 0.00 35.37 2.83
1372 1932 1.278637 CAAGACAAACCCGTGACGC 59.721 57.895 0.00 0.00 0.00 5.19
1375 1956 1.005867 GACAAACCCGTGACGCCTA 60.006 57.895 0.00 0.00 0.00 3.93
1452 2033 1.307343 CATCTGGGTGAGGGTCCCT 60.307 63.158 11.38 11.38 44.84 4.20
1654 2277 4.251103 TCCTCTGTCACCTCTAGCATTA 57.749 45.455 0.00 0.00 0.00 1.90
1657 2280 4.440802 CCTCTGTCACCTCTAGCATTACAC 60.441 50.000 0.00 0.00 0.00 2.90
1659 2282 3.441101 TGTCACCTCTAGCATTACACCT 58.559 45.455 0.00 0.00 0.00 4.00
1660 2283 4.606210 TGTCACCTCTAGCATTACACCTA 58.394 43.478 0.00 0.00 0.00 3.08
1661 2284 5.208890 TGTCACCTCTAGCATTACACCTAT 58.791 41.667 0.00 0.00 0.00 2.57
1662 2285 5.661312 TGTCACCTCTAGCATTACACCTATT 59.339 40.000 0.00 0.00 0.00 1.73
1663 2286 5.986135 GTCACCTCTAGCATTACACCTATTG 59.014 44.000 0.00 0.00 0.00 1.90
1664 2287 5.897250 TCACCTCTAGCATTACACCTATTGA 59.103 40.000 0.00 0.00 0.00 2.57
1665 2288 6.040955 TCACCTCTAGCATTACACCTATTGAG 59.959 42.308 0.00 0.00 0.00 3.02
1666 2289 5.900123 ACCTCTAGCATTACACCTATTGAGT 59.100 40.000 0.00 0.00 0.00 3.41
1702 2325 5.125097 GCATTGGAACAGAGTGATGAATCTT 59.875 40.000 0.00 0.00 42.39 2.40
1703 2326 6.552629 CATTGGAACAGAGTGATGAATCTTG 58.447 40.000 0.00 0.00 42.39 3.02
1704 2327 5.233083 TGGAACAGAGTGATGAATCTTGT 57.767 39.130 0.00 0.00 0.00 3.16
1705 2328 5.240891 TGGAACAGAGTGATGAATCTTGTC 58.759 41.667 0.00 0.00 0.00 3.18
1714 2339 8.538701 AGAGTGATGAATCTTGTCTACAGAATT 58.461 33.333 0.00 0.00 0.00 2.17
1718 2343 7.704047 TGATGAATCTTGTCTACAGAATTCGAG 59.296 37.037 0.00 0.00 34.28 4.04
1721 2346 5.977489 TCTTGTCTACAGAATTCGAGGAA 57.023 39.130 0.00 0.00 0.00 3.36
1727 2352 5.582665 GTCTACAGAATTCGAGGAAATGCTT 59.417 40.000 0.00 0.00 0.00 3.91
1730 2355 6.183309 ACAGAATTCGAGGAAATGCTTAAC 57.817 37.500 0.00 0.00 0.00 2.01
1750 2382 7.542130 GCTTAACTGGGACTAAATTTTGTGATG 59.458 37.037 10.05 1.24 0.00 3.07
1773 2405 1.153489 CTGCATCCAGGTGACCGAG 60.153 63.158 0.00 0.00 35.38 4.63
1924 2606 3.924686 GGTGCTTCAAATTCAGAATGCTG 59.075 43.478 0.00 0.00 43.67 4.41
1989 2671 4.181309 ACACTCAAAGAGGATCGAACTC 57.819 45.455 11.36 11.36 42.67 3.01
2011 2850 0.804989 GGGAGAAATTGCCAGACACG 59.195 55.000 0.00 0.00 37.22 4.49
2079 2918 4.790937 TGGCTGATTTACATGGCTATGAA 58.209 39.130 17.90 1.60 37.73 2.57
2161 3000 7.423199 CGATCATACTAACTGCAAAGGTACTA 58.577 38.462 0.00 0.00 38.49 1.82
2162 3001 7.378995 CGATCATACTAACTGCAAAGGTACTAC 59.621 40.741 0.00 0.00 38.49 2.73
2192 3033 4.900635 ACAGTTTGCTTCTCGTTTGATT 57.099 36.364 0.00 0.00 0.00 2.57
2194 3035 4.335315 ACAGTTTGCTTCTCGTTTGATTGA 59.665 37.500 0.00 0.00 0.00 2.57
2200 3041 4.214437 GCTTCTCGTTTGATTGACACTTG 58.786 43.478 0.00 0.00 0.00 3.16
2206 3047 6.019075 TCTCGTTTGATTGACACTTGTGTTAG 60.019 38.462 7.87 0.00 0.00 2.34
2207 3048 4.670621 CGTTTGATTGACACTTGTGTTAGC 59.329 41.667 7.87 3.60 0.00 3.09
2211 3052 4.826733 TGATTGACACTTGTGTTAGCCAAT 59.173 37.500 14.26 14.26 0.00 3.16
2223 3065 5.830991 TGTGTTAGCCAATACAGGAGTTTTT 59.169 36.000 0.00 0.00 31.58 1.94
2224 3066 6.149633 GTGTTAGCCAATACAGGAGTTTTTG 58.850 40.000 0.00 0.00 0.00 2.44
2225 3067 6.016610 GTGTTAGCCAATACAGGAGTTTTTGA 60.017 38.462 0.00 0.00 0.00 2.69
2226 3068 6.016610 TGTTAGCCAATACAGGAGTTTTTGAC 60.017 38.462 0.00 0.00 0.00 3.18
2227 3069 4.469657 AGCCAATACAGGAGTTTTTGACA 58.530 39.130 0.00 0.00 0.00 3.58
2228 3070 4.520492 AGCCAATACAGGAGTTTTTGACAG 59.480 41.667 0.00 0.00 0.00 3.51
2229 3071 4.798574 CCAATACAGGAGTTTTTGACAGC 58.201 43.478 0.00 0.00 0.00 4.40
2230 3072 4.520492 CCAATACAGGAGTTTTTGACAGCT 59.480 41.667 0.00 0.00 0.00 4.24
2257 3099 4.499696 CCTGTTCTTGGTTGATGTGAAACC 60.500 45.833 0.00 0.00 46.13 3.27
2258 3100 3.383185 TGTTCTTGGTTGATGTGAAACCC 59.617 43.478 3.04 0.00 45.49 4.11
2259 3101 3.593442 TCTTGGTTGATGTGAAACCCT 57.407 42.857 3.04 0.00 45.49 4.34
2262 3109 5.009631 TCTTGGTTGATGTGAAACCCTATG 58.990 41.667 3.04 0.00 45.49 2.23
2274 3121 8.156994 TGTGAAACCCTATGTAAAAGTGTTAC 57.843 34.615 0.00 0.00 34.36 2.50
2502 3350 8.441312 TCAACTTCGGTCTGTTTATTACTTTT 57.559 30.769 0.00 0.00 0.00 2.27
2510 3358 8.342634 CGGTCTGTTTATTACTTTTATGGATGG 58.657 37.037 0.00 0.00 0.00 3.51
2636 3484 2.219080 TGGAATTGCCAGCAGAATCA 57.781 45.000 0.00 0.00 43.33 2.57
2758 3612 9.546428 TTCTGATGGTATATCGCCATAATAATG 57.454 33.333 10.62 0.00 45.87 1.90
2763 3617 8.487313 TGGTATATCGCCATAATAATGTTGTC 57.513 34.615 0.00 0.00 0.00 3.18
2764 3618 7.551262 TGGTATATCGCCATAATAATGTTGTCC 59.449 37.037 0.00 0.00 0.00 4.02
2765 3619 7.551262 GGTATATCGCCATAATAATGTTGTCCA 59.449 37.037 0.00 0.00 0.00 4.02
2768 3622 6.312399 TCGCCATAATAATGTTGTCCATTC 57.688 37.500 0.00 0.00 42.81 2.67
2769 3623 6.061441 TCGCCATAATAATGTTGTCCATTCT 58.939 36.000 0.00 0.00 42.81 2.40
2770 3624 6.017192 TCGCCATAATAATGTTGTCCATTCTG 60.017 38.462 0.00 0.00 42.81 3.02
2771 3625 6.449698 GCCATAATAATGTTGTCCATTCTGG 58.550 40.000 0.00 0.00 42.81 3.86
2772 3626 6.265196 GCCATAATAATGTTGTCCATTCTGGA 59.735 38.462 0.00 0.00 45.98 3.86
2842 3718 5.953183 TGCTGCCATGTTATGACTAAAAAG 58.047 37.500 0.00 0.00 0.00 2.27
2856 3732 4.911390 ACTAAAAAGGATGCTGCACTACT 58.089 39.130 3.57 0.00 0.00 2.57
2869 3745 5.534654 TGCTGCACTACTAAAGAAATGGTTT 59.465 36.000 0.00 0.00 0.00 3.27
2900 3776 8.480501 CCATGATTCCATTCTCCTTTGTTTTAT 58.519 33.333 0.00 0.00 0.00 1.40
2977 3853 9.823647 TGAATTTACATCTGATCTTTAGAGGAC 57.176 33.333 0.74 0.00 30.99 3.85
2984 3860 8.275758 ACATCTGATCTTTAGAGGACTAGTGTA 58.724 37.037 0.00 0.00 30.99 2.90
2985 3861 8.564574 CATCTGATCTTTAGAGGACTAGTGTAC 58.435 40.741 0.00 0.00 0.00 2.90
2986 3862 7.631007 TCTGATCTTTAGAGGACTAGTGTACA 58.369 38.462 0.00 0.00 0.00 2.90
2987 3863 8.107729 TCTGATCTTTAGAGGACTAGTGTACAA 58.892 37.037 0.00 0.00 0.00 2.41
2988 3864 8.053026 TGATCTTTAGAGGACTAGTGTACAAC 57.947 38.462 0.00 0.00 0.00 3.32
2989 3865 7.668469 TGATCTTTAGAGGACTAGTGTACAACA 59.332 37.037 0.00 0.00 0.00 3.33
2990 3866 7.828508 TCTTTAGAGGACTAGTGTACAACAA 57.171 36.000 0.00 0.00 0.00 2.83
2991 3867 7.655490 TCTTTAGAGGACTAGTGTACAACAAC 58.345 38.462 0.00 0.00 0.00 3.32
2992 3868 6.964807 TTAGAGGACTAGTGTACAACAACA 57.035 37.500 0.00 0.00 0.00 3.33
2994 3870 5.598769 AGAGGACTAGTGTACAACAACAAC 58.401 41.667 0.00 0.00 0.00 3.32
2995 3871 5.128171 AGAGGACTAGTGTACAACAACAACA 59.872 40.000 0.00 0.00 0.00 3.33
2996 3872 5.736813 AGGACTAGTGTACAACAACAACAA 58.263 37.500 0.00 0.00 0.00 2.83
3000 3921 4.104696 AGTGTACAACAACAACAAAGCC 57.895 40.909 0.00 0.00 0.00 4.35
3011 3932 2.825532 ACAACAAAGCCAGTGTCTGTTT 59.174 40.909 0.00 0.00 0.00 2.83
3047 3970 2.673368 GGATCCTACTTTGCTTGTGTCG 59.327 50.000 3.84 0.00 0.00 4.35
3055 3979 6.147164 CCTACTTTGCTTGTGTCGAAGAATTA 59.853 38.462 0.00 0.00 39.69 1.40
3228 4852 0.464916 ACCCTTCCACCGTGTTGTTC 60.465 55.000 0.00 0.00 0.00 3.18
3268 4893 5.295540 GTGAGCTTCTTTCTTCAACTTCACT 59.704 40.000 0.00 0.00 0.00 3.41
3368 4994 6.037172 AGCATAACGTGTCACCTTATTTCATC 59.963 38.462 4.92 0.00 0.00 2.92
3411 5037 8.662781 TCTACCTAATGCTCACATGTTTTATC 57.337 34.615 0.00 0.00 36.36 1.75
3546 5268 9.981460 AGGGATAAAGATTTTCAGAATAGTGTT 57.019 29.630 0.00 0.00 0.00 3.32
3563 5285 0.734889 GTTGATGAACTGGCATCGGG 59.265 55.000 0.00 0.00 45.93 5.14
3567 5289 0.394352 ATGAACTGGCATCGGGGTTC 60.394 55.000 9.01 9.01 38.64 3.62
3605 5579 4.960938 ACTACAAGCATCTTCACTCACAA 58.039 39.130 0.00 0.00 0.00 3.33
3608 5582 5.117355 ACAAGCATCTTCACTCACAATTG 57.883 39.130 3.24 3.24 0.00 2.32
3623 5598 6.791887 TCACAATTGAGATTTGAGAGTGAC 57.208 37.500 13.59 0.00 0.00 3.67
3629 5604 7.991084 ATTGAGATTTGAGAGTGACATTTCA 57.009 32.000 0.00 0.00 0.00 2.69
3687 5679 0.599204 CTTTGCCTGCTTGCTTGTGG 60.599 55.000 0.00 0.00 0.00 4.17
3722 5714 4.037690 CCGCAAGTTTCAGAAAGAACAAG 58.962 43.478 0.00 0.00 35.56 3.16
3887 5895 6.585695 TGTGAACTGTAGTCTAACCCTTAG 57.414 41.667 0.00 0.00 34.52 2.18
3908 5916 3.441572 AGAAAATCCTGGCAGAATTCACG 59.558 43.478 17.94 0.00 0.00 4.35
3952 6106 1.675310 CCTGGCAGAATTCACCGCA 60.675 57.895 17.94 0.00 0.00 5.69
3968 6122 1.159285 CGCAAGGTTCATGAGCTTCA 58.841 50.000 9.57 0.00 43.93 3.02
3972 6126 3.057033 GCAAGGTTCATGAGCTTCAACAT 60.057 43.478 9.57 0.00 43.93 2.71
3984 6138 8.833493 CATGAGCTTCAACATATGTTTCATAGA 58.167 33.333 22.96 14.02 35.83 1.98
4011 6165 2.036862 ACTCGAGTAAAGGGTGTGTTCC 59.963 50.000 18.46 0.00 0.00 3.62
4068 6224 3.585862 TCTCCAAGTATTGTCGCACTTC 58.414 45.455 0.00 0.00 46.99 3.01
4069 6225 2.673368 CTCCAAGTATTGTCGCACTTCC 59.327 50.000 0.00 0.00 46.99 3.46
4071 6227 2.333926 CAAGTATTGTCGCACTTCCGA 58.666 47.619 0.00 0.00 42.34 4.55
4126 6282 8.689061 TGAATCAGAGCATTTTATATGTTGCTT 58.311 29.630 0.00 0.00 44.98 3.91
4129 6285 5.397534 CAGAGCATTTTATATGTTGCTTCGC 59.602 40.000 0.00 0.00 44.98 4.70
4130 6286 4.610945 AGCATTTTATATGTTGCTTCGCC 58.389 39.130 0.00 0.00 42.52 5.54
4131 6287 4.339247 AGCATTTTATATGTTGCTTCGCCT 59.661 37.500 0.00 0.00 42.52 5.52
4132 6288 5.043248 GCATTTTATATGTTGCTTCGCCTT 58.957 37.500 0.00 0.00 32.41 4.35
4136 6292 1.242989 TATGTTGCTTCGCCTTTGCA 58.757 45.000 0.00 0.00 37.32 4.08
4150 6306 4.666237 GCCTTTGCATGTAAGATGAAGAC 58.334 43.478 10.22 0.00 37.47 3.01
4152 6308 5.163581 GCCTTTGCATGTAAGATGAAGACAT 60.164 40.000 10.22 0.00 37.11 3.06
4161 6317 4.553330 AAGATGAAGACATACCCGTGTT 57.447 40.909 0.00 0.00 36.82 3.32
4165 6321 5.598830 AGATGAAGACATACCCGTGTTATCT 59.401 40.000 0.00 0.00 36.82 1.98
4173 6329 2.762745 ACCCGTGTTATCTGTGTTGTC 58.237 47.619 0.00 0.00 0.00 3.18
4174 6330 2.367567 ACCCGTGTTATCTGTGTTGTCT 59.632 45.455 0.00 0.00 0.00 3.41
4183 6339 1.866601 TCTGTGTTGTCTGTGCGAATG 59.133 47.619 0.00 0.00 0.00 2.67
4189 6345 3.431912 TGTTGTCTGTGCGAATGTATGAC 59.568 43.478 0.00 0.00 0.00 3.06
4204 6360 2.831685 ATGACCACGCACAGAACTTA 57.168 45.000 0.00 0.00 0.00 2.24
4213 6369 4.803613 CACGCACAGAACTTAGCATATGTA 59.196 41.667 4.29 0.00 0.00 2.29
4368 6525 1.448985 ATTACTCACAACGCCGCATT 58.551 45.000 0.00 0.00 0.00 3.56
4378 6535 1.802715 CGCCGCATTCCAAAGCAAG 60.803 57.895 0.00 0.00 0.00 4.01
4391 6548 6.121776 TCCAAAGCAAGATAGAGGTTGTAA 57.878 37.500 0.00 0.00 0.00 2.41
4392 6549 6.173339 TCCAAAGCAAGATAGAGGTTGTAAG 58.827 40.000 0.00 0.00 0.00 2.34
4393 6550 5.940470 CCAAAGCAAGATAGAGGTTGTAAGT 59.060 40.000 0.00 0.00 0.00 2.24
4394 6551 7.038587 TCCAAAGCAAGATAGAGGTTGTAAGTA 60.039 37.037 0.00 0.00 0.00 2.24
4395 6552 7.770897 CCAAAGCAAGATAGAGGTTGTAAGTAT 59.229 37.037 0.00 0.00 0.00 2.12
4396 6553 8.607459 CAAAGCAAGATAGAGGTTGTAAGTATG 58.393 37.037 0.00 0.00 0.00 2.39
4397 6554 6.821388 AGCAAGATAGAGGTTGTAAGTATGG 58.179 40.000 0.00 0.00 0.00 2.74
4402 6559 8.694581 AGATAGAGGTTGTAAGTATGGAGTAC 57.305 38.462 0.00 0.00 0.00 2.73
4436 6593 4.037803 TCATCACACAAGAAACCACAATGG 59.962 41.667 0.00 0.00 45.02 3.16
4450 6607 3.795688 ACAATGGTGTGAGGAACAGAT 57.204 42.857 0.00 0.00 40.26 2.90
4454 6611 3.126001 TGGTGTGAGGAACAGATGAAC 57.874 47.619 0.00 0.00 40.26 3.18
4459 6616 0.108804 GAGGAACAGATGAACGCGGA 60.109 55.000 12.47 0.00 0.00 5.54
4552 6732 6.468543 TGTTCATATTACTGTGGCAAGTGTA 58.531 36.000 11.08 2.88 0.00 2.90
4602 6782 2.349438 GCAGTGCTTCGTCGATGAAAAA 60.349 45.455 20.01 9.17 0.00 1.94
4638 6818 7.415229 AGTTTAACATTTGGAGTTCGACTTTC 58.585 34.615 0.00 0.00 0.00 2.62
4662 6842 5.467902 TTTTTGCACAAGTCAAAATGCTC 57.532 34.783 0.00 0.00 41.35 4.26
4663 6843 3.797451 TTGCACAAGTCAAAATGCTCA 57.203 38.095 0.00 0.00 38.90 4.26
4664 6844 3.797451 TGCACAAGTCAAAATGCTCAA 57.203 38.095 0.00 0.00 38.90 3.02
4665 6845 4.120792 TGCACAAGTCAAAATGCTCAAA 57.879 36.364 0.00 0.00 38.90 2.69
4666 6846 4.695396 TGCACAAGTCAAAATGCTCAAAT 58.305 34.783 0.00 0.00 38.90 2.32
4667 6847 5.117584 TGCACAAGTCAAAATGCTCAAATT 58.882 33.333 0.00 0.00 38.90 1.82
4668 6848 5.585445 TGCACAAGTCAAAATGCTCAAATTT 59.415 32.000 0.00 0.00 38.90 1.82
4669 6849 6.093771 TGCACAAGTCAAAATGCTCAAATTTT 59.906 30.769 0.00 0.00 39.71 1.82
4670 6850 6.968335 GCACAAGTCAAAATGCTCAAATTTTT 59.032 30.769 0.00 0.00 37.59 1.94
4671 6851 7.164662 GCACAAGTCAAAATGCTCAAATTTTTC 59.835 33.333 0.00 0.00 37.59 2.29
4672 6852 8.176365 CACAAGTCAAAATGCTCAAATTTTTCA 58.824 29.630 0.00 0.00 37.59 2.69
4673 6853 8.177013 ACAAGTCAAAATGCTCAAATTTTTCAC 58.823 29.630 0.00 0.00 37.59 3.18
4674 6854 7.250445 AGTCAAAATGCTCAAATTTTTCACC 57.750 32.000 0.00 0.00 37.59 4.02
4675 6855 7.049754 AGTCAAAATGCTCAAATTTTTCACCT 58.950 30.769 0.00 0.00 37.59 4.00
4676 6856 7.011669 AGTCAAAATGCTCAAATTTTTCACCTG 59.988 33.333 0.00 0.00 37.59 4.00
4677 6857 5.678132 AAATGCTCAAATTTTTCACCTGC 57.322 34.783 0.00 0.00 0.00 4.85
4678 6858 3.815856 TGCTCAAATTTTTCACCTGCA 57.184 38.095 0.00 0.00 0.00 4.41
4679 6859 4.134379 TGCTCAAATTTTTCACCTGCAA 57.866 36.364 0.00 0.00 0.00 4.08
4680 6860 4.511527 TGCTCAAATTTTTCACCTGCAAA 58.488 34.783 0.00 0.00 0.00 3.68
4681 6861 5.124645 TGCTCAAATTTTTCACCTGCAAAT 58.875 33.333 0.00 0.00 0.00 2.32
4682 6862 5.589452 TGCTCAAATTTTTCACCTGCAAATT 59.411 32.000 0.00 0.00 32.62 1.82
4683 6863 6.095160 TGCTCAAATTTTTCACCTGCAAATTT 59.905 30.769 0.00 0.00 39.56 1.82
4699 6879 5.548706 CAAATTTGCATGTACCATTTGGG 57.451 39.130 5.01 0.00 44.81 4.12
4713 6893 5.720371 CCATTTGGGTCTAACAATGAACA 57.280 39.130 0.00 0.00 0.00 3.18
4714 6894 5.469479 CCATTTGGGTCTAACAATGAACAC 58.531 41.667 0.00 0.00 0.00 3.32
4715 6895 5.010516 CCATTTGGGTCTAACAATGAACACA 59.989 40.000 0.00 0.00 0.00 3.72
4716 6896 6.295236 CCATTTGGGTCTAACAATGAACACAT 60.295 38.462 0.00 0.00 0.00 3.21
4717 6897 7.093988 CCATTTGGGTCTAACAATGAACACATA 60.094 37.037 0.00 0.00 0.00 2.29
4718 6898 8.469200 CATTTGGGTCTAACAATGAACACATAT 58.531 33.333 0.00 0.00 0.00 1.78
4719 6899 9.693739 ATTTGGGTCTAACAATGAACACATATA 57.306 29.630 0.00 0.00 0.00 0.86
4720 6900 9.693739 TTTGGGTCTAACAATGAACACATATAT 57.306 29.630 0.00 0.00 0.00 0.86
4721 6901 9.693739 TTGGGTCTAACAATGAACACATATATT 57.306 29.630 0.00 0.00 0.00 1.28
4722 6902 9.693739 TGGGTCTAACAATGAACACATATATTT 57.306 29.630 0.00 0.00 0.00 1.40
4766 6946 8.907685 ACGTTTGTAAAATCCATTTTTATCACG 58.092 29.630 2.68 9.12 40.82 4.35
4769 6949 8.818141 TTGTAAAATCCATTTTTATCACGCAA 57.182 26.923 2.68 0.00 40.82 4.85
4798 6978 4.018506 TGTGCTCCCTAGATCCAAATTGAA 60.019 41.667 0.00 0.00 0.00 2.69
4803 6983 6.601217 GCTCCCTAGATCCAAATTGAATATCC 59.399 42.308 0.00 0.00 0.00 2.59
4804 6984 7.646654 TCCCTAGATCCAAATTGAATATCCA 57.353 36.000 0.00 0.00 0.00 3.41
4836 7017 8.776376 AAAACTGATTTTATAGCCACATTTGG 57.224 30.769 0.00 0.00 40.01 3.28
4849 7030 4.211164 GCCACATTTGGTTGCTTACTTTTC 59.789 41.667 0.00 0.00 45.98 2.29
4861 7042 7.376072 GGTTGCTTACTTTTCGTGATATTATGC 59.624 37.037 0.00 0.00 0.00 3.14
4920 7104 8.935844 GGTTTGATTTTTATCATGACCTTTTCC 58.064 33.333 0.00 0.00 35.76 3.13
4962 7146 7.296628 CAGGATGGCTAGTTATTCTTACTCT 57.703 40.000 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 369 0.813610 CCACATCGGCGGATTTAGCA 60.814 55.000 7.21 0.00 36.08 3.49
54 383 1.428912 ACAAGGTTGATGGTCCCACAT 59.571 47.619 0.00 0.00 0.00 3.21
55 384 0.850100 ACAAGGTTGATGGTCCCACA 59.150 50.000 0.00 0.00 0.00 4.17
65 394 4.283467 AGATGTGTGCTAGTACAAGGTTGA 59.717 41.667 15.68 0.00 31.36 3.18
83 412 2.612972 CGCTAACAAGTGGGACAGATGT 60.613 50.000 0.00 0.00 41.80 3.06
84 413 2.002586 CGCTAACAAGTGGGACAGATG 58.997 52.381 0.00 0.00 41.80 2.90
100 429 2.513666 CCTTTCATGGCGGCGCTA 60.514 61.111 32.30 27.83 0.00 4.26
147 476 0.437295 CGTTCGTTTGGAGCGGTAAG 59.563 55.000 0.00 0.00 44.47 2.34
148 477 2.519826 CGTTCGTTTGGAGCGGTAA 58.480 52.632 0.00 0.00 44.47 2.85
149 478 4.248402 CGTTCGTTTGGAGCGGTA 57.752 55.556 0.00 0.00 44.47 4.02
153 482 1.730064 TGCTTATCGTTCGTTTGGAGC 59.270 47.619 0.00 0.00 0.00 4.70
154 483 2.348666 CCTGCTTATCGTTCGTTTGGAG 59.651 50.000 0.00 0.00 0.00 3.86
155 484 2.343101 CCTGCTTATCGTTCGTTTGGA 58.657 47.619 0.00 0.00 0.00 3.53
156 485 1.202031 GCCTGCTTATCGTTCGTTTGG 60.202 52.381 0.00 0.00 0.00 3.28
158 487 0.719465 CGCCTGCTTATCGTTCGTTT 59.281 50.000 0.00 0.00 0.00 3.60
161 490 1.209275 CCTCGCCTGCTTATCGTTCG 61.209 60.000 0.00 0.00 0.00 3.95
162 491 0.876342 CCCTCGCCTGCTTATCGTTC 60.876 60.000 0.00 0.00 0.00 3.95
163 492 1.144057 CCCTCGCCTGCTTATCGTT 59.856 57.895 0.00 0.00 0.00 3.85
165 494 2.663188 GCCCTCGCCTGCTTATCG 60.663 66.667 0.00 0.00 0.00 2.92
166 495 0.952984 GATGCCCTCGCCTGCTTATC 60.953 60.000 0.00 0.00 0.00 1.75
167 496 1.072159 GATGCCCTCGCCTGCTTAT 59.928 57.895 0.00 0.00 0.00 1.73
168 497 2.505982 GATGCCCTCGCCTGCTTA 59.494 61.111 0.00 0.00 0.00 3.09
169 498 4.845580 CGATGCCCTCGCCTGCTT 62.846 66.667 0.00 0.00 41.14 3.91
177 506 4.166888 TGCTGAGCCGATGCCCTC 62.167 66.667 0.23 0.00 38.69 4.30
178 507 4.172512 CTGCTGAGCCGATGCCCT 62.173 66.667 0.23 0.00 38.69 5.19
204 534 2.836020 ACCACGGTGACCTTCTTCT 58.164 52.632 10.28 0.00 0.00 2.85
221 551 0.035915 GGCCTTGGTCTCTTCCTCAC 60.036 60.000 0.00 0.00 0.00 3.51
235 565 1.349688 TGTGTCGAATAAGGTGGCCTT 59.650 47.619 3.32 5.69 46.63 4.35
237 567 1.369625 CTGTGTCGAATAAGGTGGCC 58.630 55.000 0.00 0.00 0.00 5.36
253 583 4.561938 CCAATTTGGTGACATTGATGCTGT 60.562 41.667 7.31 0.00 42.32 4.40
268 598 5.705441 TCTTTGTCTAGTAGCACCAATTTGG 59.295 40.000 14.02 14.02 45.02 3.28
288 618 4.935808 CCATAGGTTTAGTGCTTCGTCTTT 59.064 41.667 0.00 0.00 0.00 2.52
363 694 1.202830 TCTCTATCCCTCTCTGTCCGC 60.203 57.143 0.00 0.00 0.00 5.54
376 707 1.543802 CCGGGAGCAGTGATCTCTATC 59.456 57.143 6.70 0.00 0.00 2.08
402 733 0.095935 CGACATTTTCTGCCGCTCTG 59.904 55.000 0.00 0.00 0.00 3.35
446 777 5.692115 TTAACCCATATTCACTGCTCTCA 57.308 39.130 0.00 0.00 0.00 3.27
470 801 3.883631 CGTAAAACACGCCCTAGTTTT 57.116 42.857 8.15 8.15 45.03 2.43
489 820 1.877443 ACACCCCGATTTCTTTTCACG 59.123 47.619 0.00 0.00 0.00 4.35
492 823 4.316205 AAACACACCCCGATTTCTTTTC 57.684 40.909 0.00 0.00 0.00 2.29
497 828 1.339929 AGCAAAACACACCCCGATTTC 59.660 47.619 0.00 0.00 0.00 2.17
547 891 4.887655 TCGCCTGAGATATCTTTGTAGTCA 59.112 41.667 6.70 0.00 0.00 3.41
553 897 3.733224 CGAAGTCGCCTGAGATATCTTTG 59.267 47.826 6.70 3.02 0.00 2.77
554 898 3.381908 ACGAAGTCGCCTGAGATATCTTT 59.618 43.478 6.70 0.00 44.43 2.52
583 927 2.677836 GCTGAGTCGGCACATCATTTTA 59.322 45.455 19.34 0.00 35.55 1.52
586 930 0.745845 GGCTGAGTCGGCACATCATT 60.746 55.000 24.97 0.00 37.51 2.57
607 951 3.711704 ACACCCCTATGAACACCTATGAG 59.288 47.826 0.00 0.00 0.00 2.90
610 954 3.199946 CACACACCCCTATGAACACCTAT 59.800 47.826 0.00 0.00 0.00 2.57
611 955 2.569853 CACACACCCCTATGAACACCTA 59.430 50.000 0.00 0.00 0.00 3.08
634 1006 9.052080 CATACGCTCATATATATACGCACATAC 57.948 37.037 12.98 0.00 0.00 2.39
639 1011 9.216117 AGATACATACGCTCATATATATACGCA 57.784 33.333 12.98 3.13 0.00 5.24
648 1020 9.929180 ACAAAATACAGATACATACGCTCATAT 57.071 29.630 0.00 0.00 0.00 1.78
711 1090 0.322975 CCATGAGCTCCCCCTATTCG 59.677 60.000 12.15 0.00 0.00 3.34
742 1121 9.521503 GAGTCTTTTCTTGATTTGTTTTTAGCT 57.478 29.630 0.00 0.00 0.00 3.32
896 1298 1.439143 AGGAGGAGGAGAAGGAAAGGT 59.561 52.381 0.00 0.00 0.00 3.50
1654 2277 5.435686 TGGCTTCAATACTCAATAGGTGT 57.564 39.130 0.00 0.00 0.00 4.16
1657 2280 4.883585 TGCTTGGCTTCAATACTCAATAGG 59.116 41.667 0.00 0.00 0.00 2.57
1659 2282 6.183360 CCAATGCTTGGCTTCAATACTCAATA 60.183 38.462 2.58 0.00 45.17 1.90
1660 2283 5.394883 CCAATGCTTGGCTTCAATACTCAAT 60.395 40.000 2.58 0.00 45.17 2.57
1661 2284 4.082081 CCAATGCTTGGCTTCAATACTCAA 60.082 41.667 2.58 0.00 45.17 3.02
1662 2285 3.444742 CCAATGCTTGGCTTCAATACTCA 59.555 43.478 2.58 0.00 45.17 3.41
1663 2286 4.037858 CCAATGCTTGGCTTCAATACTC 57.962 45.455 2.58 0.00 45.17 2.59
1702 2325 4.870426 GCATTTCCTCGAATTCTGTAGACA 59.130 41.667 3.52 0.00 0.00 3.41
1703 2326 5.112686 AGCATTTCCTCGAATTCTGTAGAC 58.887 41.667 3.52 0.00 0.00 2.59
1704 2327 5.344743 AGCATTTCCTCGAATTCTGTAGA 57.655 39.130 3.52 0.00 0.00 2.59
1705 2328 7.278868 AGTTAAGCATTTCCTCGAATTCTGTAG 59.721 37.037 3.52 0.00 0.00 2.74
1714 2339 2.569853 TCCCAGTTAAGCATTTCCTCGA 59.430 45.455 0.00 0.00 0.00 4.04
1718 2343 6.775594 ATTTAGTCCCAGTTAAGCATTTCC 57.224 37.500 0.00 0.00 0.00 3.13
1721 2346 7.872483 CACAAAATTTAGTCCCAGTTAAGCATT 59.128 33.333 0.00 0.00 0.00 3.56
1727 2352 7.007723 ACCATCACAAAATTTAGTCCCAGTTA 58.992 34.615 0.00 0.00 0.00 2.24
1730 2355 5.982890 ACCATCACAAAATTTAGTCCCAG 57.017 39.130 0.00 0.00 0.00 4.45
1750 2382 0.678048 GTCACCTGGATGCAGGAACC 60.678 60.000 36.95 19.86 45.00 3.62
1842 2481 2.024941 AGGACCAAAAGCATCCCTTAGG 60.025 50.000 0.00 0.00 35.85 2.69
1950 2632 7.305813 TGAGTGTTCCTGTACCTGTTAATAA 57.694 36.000 0.00 0.00 0.00 1.40
1951 2633 6.921486 TGAGTGTTCCTGTACCTGTTAATA 57.079 37.500 0.00 0.00 0.00 0.98
1952 2634 5.818678 TGAGTGTTCCTGTACCTGTTAAT 57.181 39.130 0.00 0.00 0.00 1.40
1955 2637 4.163458 TCTTTGAGTGTTCCTGTACCTGTT 59.837 41.667 0.00 0.00 0.00 3.16
1989 2671 2.229784 GTGTCTGGCAATTTCTCCCTTG 59.770 50.000 0.00 0.00 0.00 3.61
2011 2850 6.228273 TGAAATCTTGACTTTCACATCGAC 57.772 37.500 0.00 0.00 37.61 4.20
2079 2918 8.565896 TCAGCAAAGTAGTTATGACATGATTT 57.434 30.769 0.00 0.00 0.00 2.17
2160 2999 5.491070 AGAAGCAAACTGTATGAGCATGTA 58.509 37.500 0.00 0.00 0.00 2.29
2161 3000 4.330250 AGAAGCAAACTGTATGAGCATGT 58.670 39.130 0.00 0.00 0.00 3.21
2162 3001 4.493708 CGAGAAGCAAACTGTATGAGCATG 60.494 45.833 0.00 0.00 0.00 4.06
2192 3033 4.709250 TGTATTGGCTAACACAAGTGTCA 58.291 39.130 6.28 0.00 44.13 3.58
2200 3041 5.959618 AAAACTCCTGTATTGGCTAACAC 57.040 39.130 0.00 0.00 0.00 3.32
2206 3047 4.798574 CTGTCAAAAACTCCTGTATTGGC 58.201 43.478 0.00 0.00 32.12 4.52
2207 3048 4.520492 AGCTGTCAAAAACTCCTGTATTGG 59.480 41.667 0.00 0.00 0.00 3.16
2211 3052 4.689612 AGAGCTGTCAAAAACTCCTGTA 57.310 40.909 0.00 0.00 0.00 2.74
2223 3065 2.224378 CCAAGAACAGGAAGAGCTGTCA 60.224 50.000 0.00 0.00 32.77 3.58
2224 3066 2.224402 ACCAAGAACAGGAAGAGCTGTC 60.224 50.000 0.00 0.00 32.77 3.51
2225 3067 1.771255 ACCAAGAACAGGAAGAGCTGT 59.229 47.619 0.00 0.00 35.00 4.40
2226 3068 2.551459 CAACCAAGAACAGGAAGAGCTG 59.449 50.000 0.00 0.00 0.00 4.24
2227 3069 2.439507 TCAACCAAGAACAGGAAGAGCT 59.560 45.455 0.00 0.00 0.00 4.09
2228 3070 2.851195 TCAACCAAGAACAGGAAGAGC 58.149 47.619 0.00 0.00 0.00 4.09
2229 3071 4.214971 CACATCAACCAAGAACAGGAAGAG 59.785 45.833 0.00 0.00 0.00 2.85
2230 3072 4.136796 CACATCAACCAAGAACAGGAAGA 58.863 43.478 0.00 0.00 0.00 2.87
2257 3099 8.617290 AGAAACCAGTAACACTTTTACATAGG 57.383 34.615 0.00 0.00 0.00 2.57
2274 3121 7.191551 CACAATCACTGCATATAAGAAACCAG 58.808 38.462 0.00 0.00 0.00 4.00
2510 3358 7.334421 TGTCCAGCACTCTAATGAGAAAATAAC 59.666 37.037 0.00 0.00 42.73 1.89
2525 3373 4.771590 TTCATCAAATTGTCCAGCACTC 57.228 40.909 0.00 0.00 0.00 3.51
2636 3484 0.031585 TTGTTACTCGCGCTCACTGT 59.968 50.000 5.56 0.00 0.00 3.55
2842 3718 5.220931 CCATTTCTTTAGTAGTGCAGCATCC 60.221 44.000 0.00 0.00 0.00 3.51
2869 3745 3.524789 AGGAGAATGGAATCATGGTGTGA 59.475 43.478 0.00 0.00 42.06 3.58
2882 3758 9.981114 AAACACTTATAAAACAAAGGAGAATGG 57.019 29.630 0.00 0.00 0.00 3.16
2900 3776 3.380004 CACTTGGACCTTGCAAACACTTA 59.620 43.478 0.00 0.00 0.00 2.24
2958 3834 7.122715 ACACTAGTCCTCTAAAGATCAGATGT 58.877 38.462 0.00 0.00 0.00 3.06
2961 3837 7.631007 TGTACACTAGTCCTCTAAAGATCAGA 58.369 38.462 0.00 0.00 0.00 3.27
2969 3845 6.964807 TGTTGTTGTACACTAGTCCTCTAA 57.035 37.500 0.00 0.00 0.00 2.10
2976 3852 5.163693 GGCTTTGTTGTTGTTGTACACTAGT 60.164 40.000 0.00 0.00 0.00 2.57
2977 3853 5.163703 TGGCTTTGTTGTTGTTGTACACTAG 60.164 40.000 0.00 0.00 0.00 2.57
2979 3855 3.508012 TGGCTTTGTTGTTGTTGTACACT 59.492 39.130 0.00 0.00 0.00 3.55
2980 3856 3.839293 TGGCTTTGTTGTTGTTGTACAC 58.161 40.909 0.00 0.00 0.00 2.90
2984 3860 2.298729 ACACTGGCTTTGTTGTTGTTGT 59.701 40.909 0.00 0.00 0.00 3.32
2985 3861 2.923020 GACACTGGCTTTGTTGTTGTTG 59.077 45.455 0.00 0.00 0.00 3.33
2986 3862 2.825532 AGACACTGGCTTTGTTGTTGTT 59.174 40.909 0.00 0.00 0.00 2.83
2987 3863 2.164219 CAGACACTGGCTTTGTTGTTGT 59.836 45.455 0.00 0.00 0.00 3.32
2988 3864 2.164219 ACAGACACTGGCTTTGTTGTTG 59.836 45.455 0.00 0.00 35.51 3.33
2989 3865 2.446435 ACAGACACTGGCTTTGTTGTT 58.554 42.857 0.00 0.00 35.51 2.83
2990 3866 2.128771 ACAGACACTGGCTTTGTTGT 57.871 45.000 0.00 0.00 35.51 3.32
2991 3867 3.508744 AAACAGACACTGGCTTTGTTG 57.491 42.857 0.00 0.00 35.51 3.33
2992 3868 5.852282 AATAAACAGACACTGGCTTTGTT 57.148 34.783 0.00 0.00 35.51 2.83
3026 3948 2.673368 CGACACAAGCAAAGTAGGATCC 59.327 50.000 2.48 2.48 0.00 3.36
3029 3951 3.069016 TCTTCGACACAAGCAAAGTAGGA 59.931 43.478 0.00 0.00 0.00 2.94
3066 3990 6.407525 GGAGCTGTTTATCAGTATGGAGAACT 60.408 42.308 0.00 0.00 45.23 3.01
3070 3994 4.346418 AGGGAGCTGTTTATCAGTATGGAG 59.654 45.833 0.00 0.00 45.23 3.86
3077 4001 6.206634 TGTTTGTTAAGGGAGCTGTTTATCAG 59.793 38.462 0.00 0.00 46.12 2.90
3228 4852 4.112687 GCTCACGCATACTGAACTGCAG 62.113 54.545 13.48 13.48 42.50 4.41
3299 4925 1.863454 CGAATGAGATACAGCCTGTGC 59.137 52.381 7.83 0.00 37.95 4.57
3368 4994 1.142778 GAGCAGAGCTTACGCGGAAG 61.143 60.000 26.95 26.95 39.88 3.46
3393 5019 7.762615 CCAAATCAGATAAAACATGTGAGCATT 59.237 33.333 0.00 0.00 31.99 3.56
3429 5142 6.093357 TGAGCAATGACAAATACGAGCATTAA 59.907 34.615 0.00 0.00 0.00 1.40
3546 5268 1.224315 CCCCGATGCCAGTTCATCA 59.776 57.895 4.87 0.00 42.15 3.07
3605 5579 7.991084 TGAAATGTCACTCTCAAATCTCAAT 57.009 32.000 0.00 0.00 0.00 2.57
3608 5582 7.967303 GGAAATGAAATGTCACTCTCAAATCTC 59.033 37.037 0.00 0.00 36.31 2.75
3610 5584 7.596494 TGGAAATGAAATGTCACTCTCAAATC 58.404 34.615 0.00 0.00 36.31 2.17
3611 5585 7.528996 TGGAAATGAAATGTCACTCTCAAAT 57.471 32.000 0.00 0.00 36.31 2.32
3612 5586 6.957920 TGGAAATGAAATGTCACTCTCAAA 57.042 33.333 0.00 0.00 36.31 2.69
3613 5587 7.528996 AATGGAAATGAAATGTCACTCTCAA 57.471 32.000 0.00 0.00 36.31 3.02
3614 5588 7.449395 AGAAATGGAAATGAAATGTCACTCTCA 59.551 33.333 0.00 0.00 36.31 3.27
3615 5589 7.824672 AGAAATGGAAATGAAATGTCACTCTC 58.175 34.615 0.00 0.00 36.31 3.20
3616 5590 7.449395 TGAGAAATGGAAATGAAATGTCACTCT 59.551 33.333 0.00 0.00 36.31 3.24
3617 5591 7.596494 TGAGAAATGGAAATGAAATGTCACTC 58.404 34.615 0.00 0.00 36.31 3.51
3722 5714 5.044558 GTCCCGAGATCTGTATTCTTTGAC 58.955 45.833 0.00 0.00 0.00 3.18
3887 5895 3.428045 CCGTGAATTCTGCCAGGATTTTC 60.428 47.826 7.05 0.00 0.00 2.29
3908 5916 2.777832 AGAAGCTCATGAACCTCACC 57.222 50.000 0.00 0.00 0.00 4.02
3952 6106 5.948162 ACATATGTTGAAGCTCATGAACCTT 59.052 36.000 1.41 7.75 0.00 3.50
3984 6138 5.245526 ACACACCCTTTACTCGAGTTATTCT 59.754 40.000 25.44 0.00 0.00 2.40
4011 6165 0.921896 AGTGGATCACCCCCTTCATG 59.078 55.000 0.00 0.00 34.49 3.07
4068 6224 2.808543 GAGGCCACTGCTTATTTATCGG 59.191 50.000 5.01 0.00 37.74 4.18
4069 6225 3.496130 CAGAGGCCACTGCTTATTTATCG 59.504 47.826 17.64 0.00 37.74 2.92
4126 6282 2.984562 TCATCTTACATGCAAAGGCGA 58.015 42.857 8.18 3.64 45.35 5.54
4129 6285 5.885230 TGTCTTCATCTTACATGCAAAGG 57.115 39.130 8.18 0.00 0.00 3.11
4130 6286 7.412853 GGTATGTCTTCATCTTACATGCAAAG 58.587 38.462 0.00 0.00 37.79 2.77
4131 6287 6.318648 GGGTATGTCTTCATCTTACATGCAAA 59.681 38.462 0.00 0.00 37.79 3.68
4132 6288 5.822519 GGGTATGTCTTCATCTTACATGCAA 59.177 40.000 0.00 0.00 37.79 4.08
4136 6292 5.128827 ACACGGGTATGTCTTCATCTTACAT 59.871 40.000 0.00 0.00 37.58 2.29
4150 6306 4.250464 ACAACACAGATAACACGGGTATG 58.750 43.478 0.00 0.00 0.00 2.39
4152 6308 3.575256 AGACAACACAGATAACACGGGTA 59.425 43.478 0.00 0.00 0.00 3.69
4161 6317 3.378911 TTCGCACAGACAACACAGATA 57.621 42.857 0.00 0.00 0.00 1.98
4165 6321 1.662517 ACATTCGCACAGACAACACA 58.337 45.000 0.00 0.00 0.00 3.72
4173 6329 1.324435 CGTGGTCATACATTCGCACAG 59.676 52.381 0.00 0.00 0.00 3.66
4174 6330 1.355005 CGTGGTCATACATTCGCACA 58.645 50.000 0.00 0.00 0.00 4.57
4183 6339 2.080286 AGTTCTGTGCGTGGTCATAC 57.920 50.000 0.00 0.00 0.00 2.39
4189 6345 1.442769 ATGCTAAGTTCTGTGCGTGG 58.557 50.000 0.00 0.00 0.00 4.94
4204 6360 5.072193 TCACAATCCACTCCATACATATGCT 59.928 40.000 1.58 0.00 32.40 3.79
4213 6369 1.410648 GCCCATCACAATCCACTCCAT 60.411 52.381 0.00 0.00 0.00 3.41
4315 6471 6.418101 AGTACACAAGGCAAGTGATATGAAT 58.582 36.000 14.92 0.00 40.16 2.57
4368 6525 4.640771 ACAACCTCTATCTTGCTTTGGA 57.359 40.909 0.00 0.00 0.00 3.53
4378 6535 8.569641 CAGTACTCCATACTTACAACCTCTATC 58.430 40.741 0.00 0.00 41.71 2.08
4391 6548 9.601217 GATGAAATAAACACAGTACTCCATACT 57.399 33.333 0.00 0.00 45.61 2.12
4392 6549 9.378551 TGATGAAATAAACACAGTACTCCATAC 57.621 33.333 0.00 0.00 0.00 2.39
4393 6550 9.378551 GTGATGAAATAAACACAGTACTCCATA 57.621 33.333 0.00 0.00 34.05 2.74
4394 6551 7.882791 TGTGATGAAATAAACACAGTACTCCAT 59.117 33.333 0.00 0.00 38.14 3.41
4395 6552 7.172532 GTGTGATGAAATAAACACAGTACTCCA 59.827 37.037 0.00 0.00 41.30 3.86
4396 6553 7.172532 TGTGTGATGAAATAAACACAGTACTCC 59.827 37.037 3.50 0.00 44.37 3.85
4397 6554 8.083462 TGTGTGATGAAATAAACACAGTACTC 57.917 34.615 3.50 0.00 44.37 2.59
4436 6593 1.461127 GCGTTCATCTGTTCCTCACAC 59.539 52.381 0.00 0.00 0.00 3.82
4552 6732 7.510001 TCCCATATGGCATGAAAATTATCAAGT 59.490 33.333 16.97 0.00 32.06 3.16
4558 6738 6.952938 TGCTATCCCATATGGCATGAAAATTA 59.047 34.615 16.97 0.00 30.51 1.40
4616 6796 7.562454 AAGAAAGTCGAACTCCAAATGTTAA 57.438 32.000 0.00 0.00 0.00 2.01
4644 6824 3.797451 TTGAGCATTTTGACTTGTGCA 57.203 38.095 0.00 0.00 39.94 4.57
4645 6825 5.662211 AATTTGAGCATTTTGACTTGTGC 57.338 34.783 0.00 0.00 37.84 4.57
4646 6826 8.176365 TGAAAAATTTGAGCATTTTGACTTGTG 58.824 29.630 0.00 0.00 36.63 3.33
4647 6827 8.177013 GTGAAAAATTTGAGCATTTTGACTTGT 58.823 29.630 0.00 0.00 36.63 3.16
4648 6828 7.641020 GGTGAAAAATTTGAGCATTTTGACTTG 59.359 33.333 0.00 0.00 36.63 3.16
4649 6829 7.553760 AGGTGAAAAATTTGAGCATTTTGACTT 59.446 29.630 0.00 0.00 36.63 3.01
4650 6830 7.011669 CAGGTGAAAAATTTGAGCATTTTGACT 59.988 33.333 0.00 0.00 36.63 3.41
4651 6831 7.127686 CAGGTGAAAAATTTGAGCATTTTGAC 58.872 34.615 0.00 0.00 36.63 3.18
4652 6832 6.238429 GCAGGTGAAAAATTTGAGCATTTTGA 60.238 34.615 0.00 0.00 36.63 2.69
4653 6833 5.910723 GCAGGTGAAAAATTTGAGCATTTTG 59.089 36.000 0.00 0.00 36.63 2.44
4654 6834 5.589452 TGCAGGTGAAAAATTTGAGCATTTT 59.411 32.000 0.00 0.00 37.86 1.82
4655 6835 5.124645 TGCAGGTGAAAAATTTGAGCATTT 58.875 33.333 0.00 0.00 0.00 2.32
4656 6836 4.706035 TGCAGGTGAAAAATTTGAGCATT 58.294 34.783 0.00 0.00 0.00 3.56
4657 6837 4.339872 TGCAGGTGAAAAATTTGAGCAT 57.660 36.364 0.00 0.00 0.00 3.79
4658 6838 3.815856 TGCAGGTGAAAAATTTGAGCA 57.184 38.095 0.00 0.00 0.00 4.26
4659 6839 5.678132 ATTTGCAGGTGAAAAATTTGAGC 57.322 34.783 0.00 0.00 0.00 4.26
4691 6871 5.010516 TGTGTTCATTGTTAGACCCAAATGG 59.989 40.000 0.00 0.00 41.37 3.16
4692 6872 6.083098 TGTGTTCATTGTTAGACCCAAATG 57.917 37.500 0.00 0.00 0.00 2.32
4693 6873 6.916360 ATGTGTTCATTGTTAGACCCAAAT 57.084 33.333 0.00 0.00 0.00 2.32
4694 6874 9.693739 ATATATGTGTTCATTGTTAGACCCAAA 57.306 29.630 0.00 0.00 35.70 3.28
4695 6875 9.693739 AATATATGTGTTCATTGTTAGACCCAA 57.306 29.630 0.00 0.00 35.70 4.12
4696 6876 9.693739 AAATATATGTGTTCATTGTTAGACCCA 57.306 29.630 0.00 0.00 35.70 4.51
4836 7017 7.376072 GGCATAATATCACGAAAAGTAAGCAAC 59.624 37.037 0.00 0.00 0.00 4.17
4898 7079 8.648698 TCAGGAAAAGGTCATGATAAAAATCA 57.351 30.769 0.00 0.00 41.99 2.57
4930 7114 8.282256 AGAATAACTAGCCATCCTGGTATTTTT 58.718 33.333 0.00 0.00 40.46 1.94
4931 7115 7.816411 AGAATAACTAGCCATCCTGGTATTTT 58.184 34.615 0.00 0.00 40.46 1.82
4932 7116 7.394144 AGAATAACTAGCCATCCTGGTATTT 57.606 36.000 0.00 0.00 40.46 1.40
4933 7117 7.394144 AAGAATAACTAGCCATCCTGGTATT 57.606 36.000 0.00 0.00 40.46 1.89
4934 7118 7.735321 AGTAAGAATAACTAGCCATCCTGGTAT 59.265 37.037 0.00 0.00 40.46 2.73
4935 7119 7.073854 AGTAAGAATAACTAGCCATCCTGGTA 58.926 38.462 0.00 0.00 40.46 3.25
4936 7120 5.905913 AGTAAGAATAACTAGCCATCCTGGT 59.094 40.000 0.00 0.00 40.46 4.00
4937 7121 6.268847 AGAGTAAGAATAACTAGCCATCCTGG 59.731 42.308 0.00 0.00 41.55 4.45
4938 7122 7.296628 AGAGTAAGAATAACTAGCCATCCTG 57.703 40.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.