Multiple sequence alignment - TraesCS5A01G553400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G553400 chr5A 100.000 2864 0 0 1 2864 705943215 705946078 0.000000e+00 5289.0
1 TraesCS5A01G553400 chr5A 81.240 597 89 8 680 1266 706066638 706066055 7.230000e-126 460.0
2 TraesCS5A01G553400 chr5A 81.496 254 31 11 2422 2671 705953113 705952872 8.100000e-46 195.0
3 TraesCS5A01G553400 chrUn 80.910 1692 257 35 678 2319 108305099 108303424 0.000000e+00 1275.0
4 TraesCS5A01G553400 chrUn 78.599 1785 266 68 581 2312 108300866 108299145 0.000000e+00 1074.0
5 TraesCS5A01G553400 chrUn 81.540 1273 188 24 635 1879 108430271 108431524 0.000000e+00 1005.0
6 TraesCS5A01G553400 chrUn 78.007 1405 245 31 675 2059 108250751 108252111 0.000000e+00 824.0
7 TraesCS5A01G553400 chrUn 77.904 1412 218 50 640 1999 108255014 108256383 0.000000e+00 793.0
8 TraesCS5A01G553400 chrUn 80.048 416 60 18 2400 2797 108303245 108302835 1.300000e-73 287.0
9 TraesCS5A01G553400 chr4B 80.482 1701 259 43 675 2318 665919852 665921536 0.000000e+00 1234.0
10 TraesCS5A01G553400 chr4B 80.818 1272 199 21 635 1879 665421624 665420371 0.000000e+00 955.0
11 TraesCS5A01G553400 chr4B 80.556 1260 199 27 635 1866 665467796 665466555 0.000000e+00 928.0
12 TraesCS5A01G553400 chr4B 77.189 1416 238 33 441 1830 625979678 625981034 0.000000e+00 747.0
13 TraesCS5A01G553400 chr4B 79.156 782 127 15 675 1453 625628553 625627805 2.550000e-140 508.0
14 TraesCS5A01G553400 chr4B 79.951 409 52 20 2410 2797 665921728 665922127 1.010000e-69 274.0
15 TraesCS5A01G553400 chr4B 78.060 433 52 26 2439 2864 665974358 665973962 1.720000e-57 233.0
16 TraesCS5A01G553400 chr4B 78.191 376 57 21 2496 2860 625622563 625622202 1.730000e-52 217.0
17 TraesCS5A01G553400 chr4B 77.333 375 62 18 2496 2860 665466180 665465819 1.740000e-47 200.0
18 TraesCS5A01G553400 chr4B 76.901 342 75 4 1067 1406 665973323 665972984 1.050000e-44 191.0
19 TraesCS5A01G553400 chr4B 86.286 175 16 5 263 437 625979470 625979636 1.750000e-42 183.0
20 TraesCS5A01G553400 chr4A 78.729 1589 269 39 567 2123 738743391 738741840 0.000000e+00 998.0
21 TraesCS5A01G553400 chr1A 77.206 1768 286 66 525 2222 552216576 552218296 0.000000e+00 924.0
22 TraesCS5A01G553400 chr7D 79.984 1259 207 24 677 1920 45838758 45837530 0.000000e+00 887.0
23 TraesCS5A01G553400 chr7D 76.961 1606 280 48 675 2226 45857975 45856406 0.000000e+00 833.0
24 TraesCS5A01G553400 chr7D 78.038 683 104 22 1659 2319 45828654 45829312 3.460000e-104 388.0
25 TraesCS5A01G553400 chr2D 76.351 1628 301 51 640 2222 14127936 14126348 0.000000e+00 797.0
26 TraesCS5A01G553400 chr2B 77.545 334 50 15 1908 2222 25842959 25842632 8.150000e-41 178.0
27 TraesCS5A01G553400 chr5D 84.694 98 15 0 115 212 73802002 73802099 6.530000e-17 99.0
28 TraesCS5A01G553400 chr3D 88.060 67 8 0 128 194 549651067 549651001 2.370000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G553400 chr5A 705943215 705946078 2863 False 5289.000000 5289 100.000000 1 2864 1 chr5A.!!$F1 2863
1 TraesCS5A01G553400 chr5A 706066055 706066638 583 True 460.000000 460 81.240000 680 1266 1 chr5A.!!$R2 586
2 TraesCS5A01G553400 chrUn 108430271 108431524 1253 False 1005.000000 1005 81.540000 635 1879 1 chrUn.!!$F1 1244
3 TraesCS5A01G553400 chrUn 108299145 108305099 5954 True 878.666667 1275 79.852333 581 2797 3 chrUn.!!$R1 2216
4 TraesCS5A01G553400 chrUn 108250751 108256383 5632 False 808.500000 824 77.955500 640 2059 2 chrUn.!!$F2 1419
5 TraesCS5A01G553400 chr4B 665420371 665421624 1253 True 955.000000 955 80.818000 635 1879 1 chr4B.!!$R3 1244
6 TraesCS5A01G553400 chr4B 665919852 665922127 2275 False 754.000000 1234 80.216500 675 2797 2 chr4B.!!$F2 2122
7 TraesCS5A01G553400 chr4B 665465819 665467796 1977 True 564.000000 928 78.944500 635 2860 2 chr4B.!!$R4 2225
8 TraesCS5A01G553400 chr4B 625627805 625628553 748 True 508.000000 508 79.156000 675 1453 1 chr4B.!!$R2 778
9 TraesCS5A01G553400 chr4B 625979470 625981034 1564 False 465.000000 747 81.737500 263 1830 2 chr4B.!!$F1 1567
10 TraesCS5A01G553400 chr4B 665972984 665974358 1374 True 212.000000 233 77.480500 1067 2864 2 chr4B.!!$R5 1797
11 TraesCS5A01G553400 chr4A 738741840 738743391 1551 True 998.000000 998 78.729000 567 2123 1 chr4A.!!$R1 1556
12 TraesCS5A01G553400 chr1A 552216576 552218296 1720 False 924.000000 924 77.206000 525 2222 1 chr1A.!!$F1 1697
13 TraesCS5A01G553400 chr7D 45837530 45838758 1228 True 887.000000 887 79.984000 677 1920 1 chr7D.!!$R1 1243
14 TraesCS5A01G553400 chr7D 45856406 45857975 1569 True 833.000000 833 76.961000 675 2226 1 chr7D.!!$R2 1551
15 TraesCS5A01G553400 chr7D 45828654 45829312 658 False 388.000000 388 78.038000 1659 2319 1 chr7D.!!$F1 660
16 TraesCS5A01G553400 chr2D 14126348 14127936 1588 True 797.000000 797 76.351000 640 2222 1 chr2D.!!$R1 1582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 492 0.038251 GCTTTGCCACCAGCTAAACC 60.038 55.0 0.00 0.0 44.23 3.27 F
1393 1490 0.036952 AGGGCGCATGATAAGGATCG 60.037 55.0 10.83 0.0 34.49 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 1850 0.320771 GAGAAGAACCAGCAGCGGAA 60.321 55.0 9.87 0.0 0.00 4.30 R
2809 3208 1.338136 GCCAAGCTCCCCTGCTACTA 61.338 60.0 0.00 0.0 43.24 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.927281 AGCATCTAATTTGGCAATCAGTT 57.073 34.783 0.00 0.00 0.00 3.16
31 32 6.290294 AGCATCTAATTTGGCAATCAGTTT 57.710 33.333 0.00 0.00 0.00 2.66
33 34 6.815142 AGCATCTAATTTGGCAATCAGTTTTC 59.185 34.615 0.00 0.00 0.00 2.29
34 35 6.815142 GCATCTAATTTGGCAATCAGTTTTCT 59.185 34.615 0.00 0.00 0.00 2.52
36 37 6.690530 TCTAATTTGGCAATCAGTTTTCTGG 58.309 36.000 0.00 0.00 46.94 3.86
37 38 3.749665 TTTGGCAATCAGTTTTCTGGG 57.250 42.857 0.00 0.00 46.94 4.45
38 39 0.968405 TGGCAATCAGTTTTCTGGGC 59.032 50.000 0.00 0.00 46.94 5.36
39 40 0.968405 GGCAATCAGTTTTCTGGGCA 59.032 50.000 0.00 0.00 46.94 5.36
40 41 1.067354 GGCAATCAGTTTTCTGGGCAG 60.067 52.381 0.00 0.00 46.94 4.85
41 42 1.670967 GCAATCAGTTTTCTGGGCAGC 60.671 52.381 0.00 0.00 46.94 5.25
42 43 1.891150 CAATCAGTTTTCTGGGCAGCT 59.109 47.619 0.00 0.00 46.94 4.24
43 44 1.542492 ATCAGTTTTCTGGGCAGCTG 58.458 50.000 10.11 10.11 46.94 4.24
44 45 0.473755 TCAGTTTTCTGGGCAGCTGA 59.526 50.000 20.43 0.00 46.94 4.26
45 46 1.133823 TCAGTTTTCTGGGCAGCTGAA 60.134 47.619 20.43 0.00 46.94 3.02
46 47 1.268899 CAGTTTTCTGGGCAGCTGAAG 59.731 52.381 20.43 11.48 43.61 3.02
47 48 1.143684 AGTTTTCTGGGCAGCTGAAGA 59.856 47.619 20.43 13.77 0.00 2.87
48 49 2.165998 GTTTTCTGGGCAGCTGAAGAT 58.834 47.619 20.43 0.00 0.00 2.40
49 50 2.560105 GTTTTCTGGGCAGCTGAAGATT 59.440 45.455 20.43 0.00 0.00 2.40
53 54 1.471684 CTGGGCAGCTGAAGATTTGTC 59.528 52.381 20.43 0.00 0.00 3.18
55 56 2.097825 GGGCAGCTGAAGATTTGTCAT 58.902 47.619 20.43 0.00 0.00 3.06
56 57 2.159282 GGGCAGCTGAAGATTTGTCATG 60.159 50.000 20.43 0.00 0.00 3.07
57 58 2.490903 GGCAGCTGAAGATTTGTCATGT 59.509 45.455 20.43 0.00 0.00 3.21
61 62 5.582269 GCAGCTGAAGATTTGTCATGTAGTA 59.418 40.000 20.43 0.00 0.00 1.82
62 63 6.456181 GCAGCTGAAGATTTGTCATGTAGTAC 60.456 42.308 20.43 0.00 0.00 2.73
63 64 6.591448 CAGCTGAAGATTTGTCATGTAGTACA 59.409 38.462 8.42 5.24 0.00 2.90
66 67 7.515841 GCTGAAGATTTGTCATGTAGTACATCG 60.516 40.741 13.00 9.11 36.53 3.84
67 68 7.543756 TGAAGATTTGTCATGTAGTACATCGA 58.456 34.615 13.00 11.10 36.53 3.59
68 69 8.032451 TGAAGATTTGTCATGTAGTACATCGAA 58.968 33.333 13.00 9.44 36.53 3.71
69 70 8.771920 AAGATTTGTCATGTAGTACATCGAAA 57.228 30.769 13.00 11.70 36.53 3.46
70 71 8.948631 AGATTTGTCATGTAGTACATCGAAAT 57.051 30.769 13.00 15.22 36.53 2.17
75 76 9.863845 TTGTCATGTAGTACATCGAAATAGAAA 57.136 29.630 13.00 0.00 36.53 2.52
76 77 9.297586 TGTCATGTAGTACATCGAAATAGAAAC 57.702 33.333 13.00 2.69 36.53 2.78
77 78 9.297586 GTCATGTAGTACATCGAAATAGAAACA 57.702 33.333 13.00 0.00 36.53 2.83
81 82 9.917129 TGTAGTACATCGAAATAGAAACAAAGA 57.083 29.630 0.00 0.00 0.00 2.52
83 84 7.950236 AGTACATCGAAATAGAAACAAAGACG 58.050 34.615 0.00 0.00 0.00 4.18
84 85 7.811236 AGTACATCGAAATAGAAACAAAGACGA 59.189 33.333 0.00 0.00 0.00 4.20
86 87 7.857569 ACATCGAAATAGAAACAAAGACGAAA 58.142 30.769 0.00 0.00 0.00 3.46
104 105 8.392372 AGACGAAATTAATAAGAATTAGGCCC 57.608 34.615 0.00 0.00 31.76 5.80
106 107 8.166422 ACGAAATTAATAAGAATTAGGCCCTG 57.834 34.615 0.00 0.00 31.76 4.45
108 109 8.630037 CGAAATTAATAAGAATTAGGCCCTGTT 58.370 33.333 0.00 0.00 31.76 3.16
109 110 9.967346 GAAATTAATAAGAATTAGGCCCTGTTC 57.033 33.333 0.00 0.69 31.76 3.18
110 111 9.487442 AAATTAATAAGAATTAGGCCCTGTTCA 57.513 29.630 0.00 0.00 31.76 3.18
112 113 5.717119 ATAAGAATTAGGCCCTGTTCAGT 57.283 39.130 0.00 0.00 31.76 3.41
113 114 3.356529 AGAATTAGGCCCTGTTCAGTG 57.643 47.619 0.00 0.00 0.00 3.66
115 116 2.789409 ATTAGGCCCTGTTCAGTGTC 57.211 50.000 0.00 0.00 0.00 3.67
117 118 1.198759 TAGGCCCTGTTCAGTGTCCC 61.199 60.000 0.00 0.00 0.00 4.46
118 119 2.358737 GCCCTGTTCAGTGTCCCG 60.359 66.667 0.00 0.00 0.00 5.14
119 120 2.347490 CCCTGTTCAGTGTCCCGG 59.653 66.667 0.00 0.00 0.00 5.73
120 121 2.214216 CCCTGTTCAGTGTCCCGGA 61.214 63.158 0.73 0.00 0.00 5.14
121 122 1.293498 CCTGTTCAGTGTCCCGGAG 59.707 63.158 0.73 0.00 0.00 4.63
122 123 1.374758 CTGTTCAGTGTCCCGGAGC 60.375 63.158 0.73 0.00 0.00 4.70
123 124 1.821061 CTGTTCAGTGTCCCGGAGCT 61.821 60.000 0.73 0.00 0.00 4.09
124 125 1.374758 GTTCAGTGTCCCGGAGCTG 60.375 63.158 0.73 11.08 0.00 4.24
125 126 2.583441 TTCAGTGTCCCGGAGCTGG 61.583 63.158 0.73 0.00 0.00 4.85
126 127 3.314331 CAGTGTCCCGGAGCTGGT 61.314 66.667 0.73 0.00 0.00 4.00
127 128 3.314331 AGTGTCCCGGAGCTGGTG 61.314 66.667 0.73 0.00 0.00 4.17
128 129 4.394712 GTGTCCCGGAGCTGGTGG 62.395 72.222 0.73 0.00 0.00 4.61
129 130 4.631740 TGTCCCGGAGCTGGTGGA 62.632 66.667 0.73 0.00 0.00 4.02
139 140 3.145228 GCTGGTGGAGCTACAGTTC 57.855 57.895 0.00 0.00 45.21 3.01
140 141 0.321671 GCTGGTGGAGCTACAGTTCA 59.678 55.000 0.00 0.00 45.21 3.18
141 142 1.270839 GCTGGTGGAGCTACAGTTCAA 60.271 52.381 0.00 0.00 45.21 2.69
142 143 2.810400 GCTGGTGGAGCTACAGTTCAAA 60.810 50.000 0.00 0.00 45.21 2.69
145 146 3.820467 TGGTGGAGCTACAGTTCAAATTG 59.180 43.478 0.00 0.00 0.00 2.32
146 147 4.072131 GGTGGAGCTACAGTTCAAATTGA 58.928 43.478 0.00 0.00 0.00 2.57
147 148 4.083271 GGTGGAGCTACAGTTCAAATTGAC 60.083 45.833 0.00 0.00 0.00 3.18
148 149 3.745975 TGGAGCTACAGTTCAAATTGACG 59.254 43.478 0.00 0.00 0.00 4.35
149 150 3.125316 GGAGCTACAGTTCAAATTGACGG 59.875 47.826 0.00 0.00 0.00 4.79
150 151 3.994392 GAGCTACAGTTCAAATTGACGGA 59.006 43.478 0.00 0.00 0.00 4.69
151 152 3.997021 AGCTACAGTTCAAATTGACGGAG 59.003 43.478 0.00 0.00 0.00 4.63
152 153 3.424962 GCTACAGTTCAAATTGACGGAGC 60.425 47.826 7.45 7.45 0.00 4.70
153 154 2.851195 ACAGTTCAAATTGACGGAGCT 58.149 42.857 0.00 0.00 0.00 4.09
154 155 3.214328 ACAGTTCAAATTGACGGAGCTT 58.786 40.909 0.00 0.00 0.00 3.74
155 156 3.251004 ACAGTTCAAATTGACGGAGCTTC 59.749 43.478 0.00 0.00 0.00 3.86
156 157 3.250762 CAGTTCAAATTGACGGAGCTTCA 59.749 43.478 0.00 0.00 0.00 3.02
157 158 4.074970 AGTTCAAATTGACGGAGCTTCAT 58.925 39.130 0.00 0.00 0.00 2.57
158 159 4.520492 AGTTCAAATTGACGGAGCTTCATT 59.480 37.500 0.00 0.00 0.00 2.57
159 160 5.010012 AGTTCAAATTGACGGAGCTTCATTT 59.990 36.000 0.00 0.00 0.00 2.32
161 162 5.460646 TCAAATTGACGGAGCTTCATTTTC 58.539 37.500 0.00 0.00 28.69 2.29
162 163 4.440839 AATTGACGGAGCTTCATTTTCC 57.559 40.909 0.00 0.00 0.00 3.13
163 164 2.859165 TGACGGAGCTTCATTTTCCT 57.141 45.000 0.00 0.00 0.00 3.36
166 167 0.375106 CGGAGCTTCATTTTCCTCGC 59.625 55.000 0.00 0.00 0.00 5.03
169 170 1.668237 GAGCTTCATTTTCCTCGCTCC 59.332 52.381 0.00 0.00 38.27 4.70
171 172 0.375106 CTTCATTTTCCTCGCTCCGC 59.625 55.000 0.00 0.00 0.00 5.54
172 173 0.321210 TTCATTTTCCTCGCTCCGCA 60.321 50.000 0.00 0.00 0.00 5.69
173 174 0.740868 TCATTTTCCTCGCTCCGCAG 60.741 55.000 0.00 0.00 0.00 5.18
174 175 0.740868 CATTTTCCTCGCTCCGCAGA 60.741 55.000 0.00 0.00 0.00 4.26
177 178 0.460284 TTTCCTCGCTCCGCAGATTC 60.460 55.000 0.00 0.00 0.00 2.52
178 179 2.279784 CCTCGCTCCGCAGATTCC 60.280 66.667 0.00 0.00 0.00 3.01
179 180 2.656651 CTCGCTCCGCAGATTCCG 60.657 66.667 0.00 0.00 0.00 4.30
180 181 4.207281 TCGCTCCGCAGATTCCGG 62.207 66.667 0.00 0.00 46.88 5.14
182 183 3.849951 GCTCCGCAGATTCCGGGA 61.850 66.667 0.00 0.00 45.60 5.14
183 184 2.419198 CTCCGCAGATTCCGGGAG 59.581 66.667 0.00 0.00 45.60 4.30
184 185 2.363795 TCCGCAGATTCCGGGAGT 60.364 61.111 0.00 0.00 45.60 3.85
185 186 1.961180 CTCCGCAGATTCCGGGAGTT 61.961 60.000 0.00 0.00 45.60 3.01
187 188 1.815421 CGCAGATTCCGGGAGTTGG 60.815 63.158 0.00 0.00 0.00 3.77
188 189 1.299976 GCAGATTCCGGGAGTTGGT 59.700 57.895 0.00 0.00 0.00 3.67
189 190 1.026718 GCAGATTCCGGGAGTTGGTG 61.027 60.000 0.00 0.00 0.00 4.17
190 191 0.392998 CAGATTCCGGGAGTTGGTGG 60.393 60.000 0.00 0.00 0.00 4.61
192 193 0.546598 GATTCCGGGAGTTGGTGGAT 59.453 55.000 0.00 0.00 0.00 3.41
193 194 0.999712 ATTCCGGGAGTTGGTGGATT 59.000 50.000 0.00 0.00 0.00 3.01
194 195 1.659022 TTCCGGGAGTTGGTGGATTA 58.341 50.000 0.00 0.00 0.00 1.75
195 196 0.906775 TCCGGGAGTTGGTGGATTAC 59.093 55.000 0.00 0.00 0.00 1.89
207 208 1.580059 TGGATTACCAGACAGGGTCC 58.420 55.000 0.00 0.00 43.89 4.46
209 210 2.316677 TGGATTACCAGACAGGGTCCTA 59.683 50.000 0.00 0.00 43.89 2.94
210 211 3.246203 TGGATTACCAGACAGGGTCCTAA 60.246 47.826 0.00 0.00 43.89 2.69
211 212 3.974642 GGATTACCAGACAGGGTCCTAAT 59.025 47.826 0.00 0.00 43.89 1.73
212 213 4.040584 GGATTACCAGACAGGGTCCTAATC 59.959 50.000 0.00 0.00 43.89 1.75
213 214 2.950990 ACCAGACAGGGTCCTAATCT 57.049 50.000 0.00 0.00 43.89 2.40
215 216 2.840651 ACCAGACAGGGTCCTAATCTTG 59.159 50.000 1.44 1.80 43.89 3.02
216 217 2.420687 CCAGACAGGGTCCTAATCTTGC 60.421 54.545 1.44 0.00 32.18 4.01
218 219 2.503356 AGACAGGGTCCTAATCTTGCAG 59.497 50.000 0.00 0.00 32.18 4.41
219 220 1.065126 ACAGGGTCCTAATCTTGCAGC 60.065 52.381 0.00 0.00 0.00 5.25
220 221 1.065199 CAGGGTCCTAATCTTGCAGCA 60.065 52.381 0.00 0.00 0.00 4.41
221 222 1.849039 AGGGTCCTAATCTTGCAGCAT 59.151 47.619 0.00 0.00 0.00 3.79
222 223 1.952296 GGGTCCTAATCTTGCAGCATG 59.048 52.381 0.00 0.00 40.87 4.06
223 224 2.421952 GGGTCCTAATCTTGCAGCATGA 60.422 50.000 13.08 13.08 39.69 3.07
224 225 2.877168 GGTCCTAATCTTGCAGCATGAG 59.123 50.000 15.62 2.52 39.69 2.90
225 226 3.432749 GGTCCTAATCTTGCAGCATGAGA 60.433 47.826 15.62 8.09 39.69 3.27
226 227 4.194640 GTCCTAATCTTGCAGCATGAGAA 58.805 43.478 15.62 6.24 39.69 2.87
227 228 4.637534 GTCCTAATCTTGCAGCATGAGAAA 59.362 41.667 15.62 4.10 39.69 2.52
229 230 3.863142 AATCTTGCAGCATGAGAAACC 57.137 42.857 15.62 0.00 39.69 3.27
231 232 2.430465 TCTTGCAGCATGAGAAACCTC 58.570 47.619 6.89 0.00 39.69 3.85
232 233 2.039480 TCTTGCAGCATGAGAAACCTCT 59.961 45.455 6.89 0.00 39.69 3.69
233 234 2.574006 TGCAGCATGAGAAACCTCTT 57.426 45.000 0.00 0.00 39.69 2.85
234 235 2.430465 TGCAGCATGAGAAACCTCTTC 58.570 47.619 0.00 0.00 39.69 2.87
235 236 1.742268 GCAGCATGAGAAACCTCTTCC 59.258 52.381 0.00 0.00 39.69 3.46
236 237 2.617532 GCAGCATGAGAAACCTCTTCCT 60.618 50.000 0.00 0.00 39.69 3.36
237 238 3.269178 CAGCATGAGAAACCTCTTCCTC 58.731 50.000 0.00 0.00 39.69 3.71
239 240 3.006247 GCATGAGAAACCTCTTCCTCAC 58.994 50.000 0.00 0.00 38.32 3.51
240 241 3.557898 GCATGAGAAACCTCTTCCTCACA 60.558 47.826 0.00 0.00 38.32 3.58
241 242 4.841422 CATGAGAAACCTCTTCCTCACAT 58.159 43.478 0.00 0.00 38.32 3.21
242 243 4.277515 TGAGAAACCTCTTCCTCACATG 57.722 45.455 0.00 0.00 31.45 3.21
243 244 3.648067 TGAGAAACCTCTTCCTCACATGT 59.352 43.478 0.00 0.00 31.45 3.21
244 245 4.249661 GAGAAACCTCTTCCTCACATGTC 58.750 47.826 0.00 0.00 29.54 3.06
245 246 3.008485 AGAAACCTCTTCCTCACATGTCC 59.992 47.826 0.00 0.00 0.00 4.02
246 247 1.280457 ACCTCTTCCTCACATGTCCC 58.720 55.000 0.00 0.00 0.00 4.46
248 249 2.044492 ACCTCTTCCTCACATGTCCCTA 59.956 50.000 0.00 0.00 0.00 3.53
249 250 3.107601 CCTCTTCCTCACATGTCCCTAA 58.892 50.000 0.00 0.00 0.00 2.69
250 251 3.118592 CCTCTTCCTCACATGTCCCTAAC 60.119 52.174 0.00 0.00 0.00 2.34
251 252 3.515502 CTCTTCCTCACATGTCCCTAACA 59.484 47.826 0.00 0.00 43.51 2.41
252 253 3.907474 TCTTCCTCACATGTCCCTAACAA 59.093 43.478 0.00 0.00 42.37 2.83
253 254 4.349636 TCTTCCTCACATGTCCCTAACAAA 59.650 41.667 0.00 0.00 42.37 2.83
254 255 4.286297 TCCTCACATGTCCCTAACAAAG 57.714 45.455 0.00 0.00 42.37 2.77
256 257 4.104102 TCCTCACATGTCCCTAACAAAGTT 59.896 41.667 0.00 0.00 42.37 2.66
257 258 5.308497 TCCTCACATGTCCCTAACAAAGTTA 59.692 40.000 0.00 0.00 42.37 2.24
258 259 6.001460 CCTCACATGTCCCTAACAAAGTTAA 58.999 40.000 0.00 0.00 42.37 2.01
260 261 7.013846 CCTCACATGTCCCTAACAAAGTTAAAA 59.986 37.037 0.00 0.00 42.37 1.52
284 285 2.397044 AAACTTGATGGGCCTTTCCA 57.603 45.000 4.53 0.00 41.60 3.53
286 287 0.613012 ACTTGATGGGCCTTTCCAGC 60.613 55.000 4.53 0.00 43.03 4.85
292 293 2.751436 GGCCTTTCCAGCGCATGA 60.751 61.111 11.47 1.57 34.01 3.07
311 312 6.183360 CGCATGACATAATTTAGACCACTTGT 60.183 38.462 0.00 0.00 0.00 3.16
346 347 1.065926 AGCGTTGAAGCATCTCATGGA 60.066 47.619 0.00 0.00 40.15 3.41
355 356 0.816825 CATCTCATGGACTTGGGCCG 60.817 60.000 0.00 0.00 0.00 6.13
357 358 4.424711 TCATGGACTTGGGCCGGC 62.425 66.667 21.18 21.18 0.00 6.13
399 400 3.688159 CAACCAAGCAGCCAGGGC 61.688 66.667 0.97 0.97 42.33 5.19
420 421 2.034878 TCCAGAATCTCCATCACTCCG 58.965 52.381 0.00 0.00 0.00 4.63
428 429 2.484062 CCATCACTCCGGCAATGGC 61.484 63.158 0.00 0.00 40.13 4.40
455 492 0.038251 GCTTTGCCACCAGCTAAACC 60.038 55.000 0.00 0.00 44.23 3.27
466 503 1.405821 CAGCTAAACCTCCGTCGATCT 59.594 52.381 0.00 0.00 0.00 2.75
467 504 1.677052 AGCTAAACCTCCGTCGATCTC 59.323 52.381 0.00 0.00 0.00 2.75
479 516 0.746923 TCGATCTCGTCCACGACCAT 60.747 55.000 0.00 0.00 44.22 3.55
480 517 0.592500 CGATCTCGTCCACGACCATG 60.593 60.000 0.00 0.00 44.22 3.66
483 520 1.153823 CTCGTCCACGACCATGACC 60.154 63.158 0.00 0.00 44.22 4.02
485 522 1.736645 CGTCCACGACCATGACCAC 60.737 63.158 0.00 0.00 43.02 4.16
486 523 1.375523 GTCCACGACCATGACCACC 60.376 63.158 0.00 0.00 0.00 4.61
487 524 1.839296 TCCACGACCATGACCACCA 60.839 57.895 0.00 0.00 0.00 4.17
490 527 2.144078 ACGACCATGACCACCACCA 61.144 57.895 0.00 0.00 0.00 4.17
492 529 1.303317 GACCATGACCACCACCACC 60.303 63.158 0.00 0.00 0.00 4.61
502 539 4.947147 CCACCACCACCACCACCG 62.947 72.222 0.00 0.00 0.00 4.94
505 542 3.632080 CCACCACCACCACCGCTA 61.632 66.667 0.00 0.00 0.00 4.26
508 545 4.752879 CCACCACCACCGCTACCG 62.753 72.222 0.00 0.00 0.00 4.02
536 573 1.229076 GAACCACCACCACAACCCT 59.771 57.895 0.00 0.00 0.00 4.34
547 584 0.810031 CACAACCCTAATCGCCTCCG 60.810 60.000 0.00 0.00 0.00 4.63
633 691 0.467106 CCACCACCATCACAACCACA 60.467 55.000 0.00 0.00 0.00 4.17
652 710 3.055719 CCATCACCACCACCGCAC 61.056 66.667 0.00 0.00 0.00 5.34
712 782 1.079543 CTCGGACAGGACCAGCTTG 60.080 63.158 0.00 0.00 0.00 4.01
836 906 4.796231 CTTCCGCGTCCTCCACCG 62.796 72.222 4.92 0.00 0.00 4.94
1048 1121 3.760693 TGGAACAAGCTCGATAGGC 57.239 52.632 0.00 0.00 31.92 3.93
1049 1122 0.178068 TGGAACAAGCTCGATAGGCC 59.822 55.000 0.00 0.00 31.92 5.19
1050 1123 0.876342 GGAACAAGCTCGATAGGCCG 60.876 60.000 0.00 0.00 33.53 6.13
1052 1125 0.179108 AACAAGCTCGATAGGCCGTC 60.179 55.000 0.00 0.00 33.53 4.79
1053 1126 1.320344 ACAAGCTCGATAGGCCGTCA 61.320 55.000 11.08 0.00 33.53 4.35
1055 1128 1.038130 AAGCTCGATAGGCCGTCAGT 61.038 55.000 11.08 0.00 33.53 3.41
1057 1130 1.360551 CTCGATAGGCCGTCAGTGG 59.639 63.158 11.08 0.00 0.00 4.00
1059 1132 1.065928 CGATAGGCCGTCAGTGGAC 59.934 63.158 11.08 0.00 40.77 4.02
1139 1227 0.899717 GGCAATGTCAAGGCTGGGAA 60.900 55.000 0.00 0.00 0.00 3.97
1209 1297 4.493747 CCCTCGTCCTTCGGCGTC 62.494 72.222 6.85 0.00 40.32 5.19
1223 1311 2.801162 CGTCGTCTGTGTCTGCGG 60.801 66.667 0.00 0.00 0.00 5.69
1232 1320 1.264749 TGTGTCTGCGGGGATAAGCT 61.265 55.000 0.00 0.00 0.00 3.74
1243 1333 2.224233 GGGGATAAGCTAAGGGTTCGTC 60.224 54.545 0.00 0.00 34.76 4.20
1307 1404 2.561569 GTGGGTGGAAATCTATGGACG 58.438 52.381 0.00 0.00 0.00 4.79
1314 1411 4.576463 GTGGAAATCTATGGACGCAAGAAT 59.424 41.667 0.00 0.00 43.62 2.40
1327 1424 5.278315 GGACGCAAGAATCTAAAGTTTGGTT 60.278 40.000 0.00 0.00 43.62 3.67
1335 1432 3.892284 TCTAAAGTTTGGTTCTGGCACA 58.108 40.909 0.00 0.00 0.00 4.57
1338 1435 1.680338 AGTTTGGTTCTGGCACACTC 58.320 50.000 0.00 0.00 0.00 3.51
1393 1490 0.036952 AGGGCGCATGATAAGGATCG 60.037 55.000 10.83 0.00 34.49 3.69
1416 1513 1.762370 ACTGCGACCATGGATATCACA 59.238 47.619 21.47 5.01 0.00 3.58
1432 1529 2.398588 TCACATCTGTGGATCTACCCC 58.601 52.381 6.77 0.00 45.65 4.95
1520 1629 6.068473 TGTCTATGCATCTGATGATTTTGC 57.932 37.500 21.30 6.77 0.00 3.68
1521 1630 5.826208 TGTCTATGCATCTGATGATTTTGCT 59.174 36.000 21.30 0.00 0.00 3.91
1587 1696 1.244019 GGGTGCCGCAGAAGACAATT 61.244 55.000 0.00 0.00 0.00 2.32
1589 1698 0.109597 GTGCCGCAGAAGACAATTGG 60.110 55.000 10.83 0.00 0.00 3.16
1677 1825 1.606994 GGATGCGTGTACTTGTCCACA 60.607 52.381 0.00 0.00 0.00 4.17
1702 1850 1.948611 GCATGACACCCGTTGGTACAT 60.949 52.381 0.00 0.00 45.57 2.29
1777 1925 0.820891 CGAGGGATGCTTTGATGGGG 60.821 60.000 0.00 0.00 0.00 4.96
1836 1987 1.952296 GTTGGTGATGATGGGAGCATC 59.048 52.381 0.00 0.00 41.87 3.91
1860 2014 4.821805 GGACATGAAGTTGAAGGTTCTCAA 59.178 41.667 0.00 0.00 32.89 3.02
1885 2041 5.355071 TGAAGCCTGCAGTTGTTTATCATAG 59.645 40.000 13.81 0.00 0.00 2.23
1890 2046 4.199310 TGCAGTTGTTTATCATAGGAGGC 58.801 43.478 0.00 0.00 0.00 4.70
1906 2070 8.278639 TCATAGGAGGCAATTTATGGAAGTTTA 58.721 33.333 0.00 0.00 0.00 2.01
1923 2087 8.778059 TGGAAGTTTATGGGTATGAGTTAATCT 58.222 33.333 0.00 0.00 0.00 2.40
1977 2150 5.404466 TCTAATTGGCATTGAAAACTGGG 57.596 39.130 0.00 0.00 0.00 4.45
1979 2152 4.914177 AATTGGCATTGAAAACTGGGAT 57.086 36.364 0.00 0.00 0.00 3.85
2061 2269 6.655078 AAATTATTGGTTCAGTTCTGCAGT 57.345 33.333 14.67 0.00 0.00 4.40
2072 2280 6.304356 TCAGTTCTGCAGTTAGTGAATTTG 57.696 37.500 14.67 3.44 0.00 2.32
2082 2290 7.148188 TGCAGTTAGTGAATTTGATGGAAGATC 60.148 37.037 0.00 0.00 0.00 2.75
2083 2291 7.148188 GCAGTTAGTGAATTTGATGGAAGATCA 60.148 37.037 0.00 0.00 0.00 2.92
2091 2299 8.186163 TGAATTTGATGGAAGATCAGATTTTCG 58.814 33.333 7.43 0.00 34.36 3.46
2095 2303 7.112452 TGATGGAAGATCAGATTTTCGTCTA 57.888 36.000 7.43 0.00 0.00 2.59
2113 2323 3.251004 GTCTACTGCAAACTTTCTGTGGG 59.749 47.826 0.00 0.00 0.00 4.61
2127 2340 6.156256 ACTTTCTGTGGGATACTGCTATGTTA 59.844 38.462 0.00 0.00 0.00 2.41
2142 2355 4.816385 GCTATGTTACATTTGCAGCTAGGA 59.184 41.667 2.23 0.00 0.00 2.94
2145 2358 5.414789 TGTTACATTTGCAGCTAGGACTA 57.585 39.130 0.00 0.00 0.00 2.59
2149 2362 7.393234 TGTTACATTTGCAGCTAGGACTAATTT 59.607 33.333 0.00 0.00 0.00 1.82
2151 2364 5.711976 ACATTTGCAGCTAGGACTAATTTGT 59.288 36.000 0.00 0.00 0.00 2.83
2153 2366 6.648879 TTTGCAGCTAGGACTAATTTGTTT 57.351 33.333 0.00 0.00 0.00 2.83
2154 2367 5.880054 TGCAGCTAGGACTAATTTGTTTC 57.120 39.130 0.00 0.00 0.00 2.78
2156 2369 5.412594 TGCAGCTAGGACTAATTTGTTTCTG 59.587 40.000 0.00 0.33 0.00 3.02
2157 2370 5.674820 GCAGCTAGGACTAATTTGTTTCTGC 60.675 44.000 12.63 12.63 35.89 4.26
2172 2403 3.502191 TTCTGCAGTTTGTGTTTGTCC 57.498 42.857 14.67 0.00 0.00 4.02
2180 2411 6.312426 TGCAGTTTGTGTTTGTCCTTTATTTG 59.688 34.615 0.00 0.00 0.00 2.32
2190 2421 7.489757 TGTTTGTCCTTTATTTGGAGAAAAACG 59.510 33.333 6.66 0.00 44.64 3.60
2258 2491 7.538334 TCAGATGTGCATAAAGTTCGAAAAATG 59.462 33.333 0.00 2.81 0.00 2.32
2261 2494 7.993821 TGTGCATAAAGTTCGAAAAATGAAA 57.006 28.000 0.00 0.00 0.00 2.69
2292 2525 4.910195 TGCACCAGTGATTCTAACAAGAT 58.090 39.130 0.99 0.00 0.00 2.40
2304 2537 8.141909 TGATTCTAACAAGATTCCCTGTATACG 58.858 37.037 0.00 0.00 0.00 3.06
2305 2538 7.649533 TTCTAACAAGATTCCCTGTATACGA 57.350 36.000 0.00 0.00 0.00 3.43
2405 2742 7.620188 GCGCACAACTAGTAATATGCTTATCTG 60.620 40.741 0.30 1.29 0.00 2.90
2435 2785 5.779241 TCTTCTGAATATGTTCCCACCTT 57.221 39.130 0.00 0.00 33.26 3.50
2437 2787 6.650120 TCTTCTGAATATGTTCCCACCTTAC 58.350 40.000 0.00 0.00 33.26 2.34
2451 2801 2.293399 CACCTTACTTTTGTGGTGGCTC 59.707 50.000 0.00 0.00 40.67 4.70
2453 2803 2.554032 CCTTACTTTTGTGGTGGCTCAG 59.446 50.000 0.00 0.00 0.00 3.35
2523 2875 4.838986 GGCCCCTTACTTGACTAGATATCA 59.161 45.833 5.32 0.00 0.00 2.15
2545 2897 8.834749 ATCAGAGAGTTTTGAAAGTAGTTACC 57.165 34.615 0.00 0.00 0.00 2.85
2564 2916 7.430441 AGTTACCGTTTGTTGCATTATTTCTT 58.570 30.769 0.00 0.00 0.00 2.52
2592 2960 6.486657 TCTGCTGTTTACTGTTTTGCTCTATT 59.513 34.615 0.00 0.00 0.00 1.73
2601 2969 7.277174 ACTGTTTTGCTCTATTTTAACTGCT 57.723 32.000 0.00 0.00 0.00 4.24
2603 2971 8.290325 ACTGTTTTGCTCTATTTTAACTGCTAC 58.710 33.333 0.00 0.00 0.00 3.58
2604 2972 7.590279 TGTTTTGCTCTATTTTAACTGCTACC 58.410 34.615 0.00 0.00 0.00 3.18
2605 2973 7.229707 TGTTTTGCTCTATTTTAACTGCTACCA 59.770 33.333 0.00 0.00 0.00 3.25
2620 2988 5.222079 TGCTACCAGTTTATGTTCAGTCA 57.778 39.130 0.00 0.00 0.00 3.41
2621 2989 5.804639 TGCTACCAGTTTATGTTCAGTCAT 58.195 37.500 0.00 0.00 0.00 3.06
2622 2990 6.941857 TGCTACCAGTTTATGTTCAGTCATA 58.058 36.000 0.00 0.00 0.00 2.15
2623 2991 7.390823 TGCTACCAGTTTATGTTCAGTCATAA 58.609 34.615 0.00 0.00 38.15 1.90
2624 2992 7.880713 TGCTACCAGTTTATGTTCAGTCATAAA 59.119 33.333 7.49 7.49 43.47 1.40
2702 3076 6.610741 TTGCAAGAAAGTTGTTGTGTTTTT 57.389 29.167 0.00 0.00 34.29 1.94
2789 3188 7.234988 AGGGTAGAATTTACACAGACTAACACT 59.765 37.037 0.00 0.00 0.00 3.55
2790 3189 7.331193 GGGTAGAATTTACACAGACTAACACTG 59.669 40.741 0.00 0.00 40.68 3.66
2807 3206 4.564041 ACACTGTGTTTTTGTGATGCAAA 58.436 34.783 7.80 0.00 44.52 3.68
2823 3222 1.950216 GCAAAATAGTAGCAGGGGAGC 59.050 52.381 0.00 0.00 0.00 4.70
2827 3226 1.428869 ATAGTAGCAGGGGAGCTTGG 58.571 55.000 0.00 0.00 43.70 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.305555 ACTGATTGCCAAATTAGATGCTATTAT 57.694 29.630 0.00 0.00 33.99 1.28
4 5 8.696043 ACTGATTGCCAAATTAGATGCTATTA 57.304 30.769 0.00 0.00 33.99 0.98
5 6 7.592885 ACTGATTGCCAAATTAGATGCTATT 57.407 32.000 0.00 0.00 33.99 1.73
6 7 7.592885 AACTGATTGCCAAATTAGATGCTAT 57.407 32.000 0.00 0.00 33.99 2.97
7 8 7.408756 AAACTGATTGCCAAATTAGATGCTA 57.591 32.000 0.00 0.00 33.99 3.49
8 9 5.927281 AACTGATTGCCAAATTAGATGCT 57.073 34.783 0.00 0.00 33.99 3.79
10 11 7.277098 CCAGAAAACTGATTGCCAAATTAGATG 59.723 37.037 0.00 0.00 33.99 2.90
11 12 7.325694 CCAGAAAACTGATTGCCAAATTAGAT 58.674 34.615 0.00 0.00 33.99 1.98
13 14 5.870978 CCCAGAAAACTGATTGCCAAATTAG 59.129 40.000 0.00 0.00 35.91 1.73
14 15 5.792741 CCCAGAAAACTGATTGCCAAATTA 58.207 37.500 0.00 0.00 0.00 1.40
15 16 4.644498 CCCAGAAAACTGATTGCCAAATT 58.356 39.130 0.00 0.00 0.00 1.82
16 17 3.557686 GCCCAGAAAACTGATTGCCAAAT 60.558 43.478 0.00 0.00 0.00 2.32
18 19 1.344114 GCCCAGAAAACTGATTGCCAA 59.656 47.619 0.00 0.00 0.00 4.52
19 20 0.968405 GCCCAGAAAACTGATTGCCA 59.032 50.000 0.00 0.00 0.00 4.92
21 22 1.670967 GCTGCCCAGAAAACTGATTGC 60.671 52.381 0.00 0.00 0.00 3.56
23 24 1.891150 CAGCTGCCCAGAAAACTGATT 59.109 47.619 0.00 0.00 0.00 2.57
24 25 1.074405 TCAGCTGCCCAGAAAACTGAT 59.926 47.619 9.47 0.00 0.00 2.90
25 26 0.473755 TCAGCTGCCCAGAAAACTGA 59.526 50.000 9.47 0.00 0.00 3.41
26 27 1.268899 CTTCAGCTGCCCAGAAAACTG 59.731 52.381 9.47 0.00 0.00 3.16
27 28 1.143684 TCTTCAGCTGCCCAGAAAACT 59.856 47.619 9.47 0.00 0.00 2.66
28 29 1.609208 TCTTCAGCTGCCCAGAAAAC 58.391 50.000 9.47 0.00 0.00 2.43
30 31 2.559668 CAAATCTTCAGCTGCCCAGAAA 59.440 45.455 9.47 0.00 0.00 2.52
31 32 2.165167 CAAATCTTCAGCTGCCCAGAA 58.835 47.619 9.47 0.00 0.00 3.02
33 34 1.471684 GACAAATCTTCAGCTGCCCAG 59.528 52.381 9.47 4.92 0.00 4.45
34 35 1.202915 TGACAAATCTTCAGCTGCCCA 60.203 47.619 9.47 0.00 0.00 5.36
35 36 1.538047 TGACAAATCTTCAGCTGCCC 58.462 50.000 9.47 0.00 0.00 5.36
36 37 2.490903 ACATGACAAATCTTCAGCTGCC 59.509 45.455 9.47 0.00 0.00 4.85
37 38 3.844577 ACATGACAAATCTTCAGCTGC 57.155 42.857 9.47 0.00 0.00 5.25
38 39 6.591448 TGTACTACATGACAAATCTTCAGCTG 59.409 38.462 7.63 7.63 0.00 4.24
39 40 6.701340 TGTACTACATGACAAATCTTCAGCT 58.299 36.000 0.00 0.00 0.00 4.24
40 41 6.968131 TGTACTACATGACAAATCTTCAGC 57.032 37.500 0.00 0.00 0.00 4.26
41 42 7.702348 TCGATGTACTACATGACAAATCTTCAG 59.298 37.037 6.41 0.00 39.27 3.02
42 43 7.543756 TCGATGTACTACATGACAAATCTTCA 58.456 34.615 6.41 0.00 39.27 3.02
43 44 7.987268 TCGATGTACTACATGACAAATCTTC 57.013 36.000 6.41 0.00 39.27 2.87
44 45 8.771920 TTTCGATGTACTACATGACAAATCTT 57.228 30.769 6.41 0.00 39.27 2.40
45 46 8.948631 ATTTCGATGTACTACATGACAAATCT 57.051 30.769 6.41 0.00 39.27 2.40
48 49 9.863845 TTCTATTTCGATGTACTACATGACAAA 57.136 29.630 6.41 3.57 39.27 2.83
49 50 9.863845 TTTCTATTTCGATGTACTACATGACAA 57.136 29.630 6.41 0.00 39.27 3.18
55 56 9.917129 TCTTTGTTTCTATTTCGATGTACTACA 57.083 29.630 0.00 0.00 0.00 2.74
57 58 9.069078 CGTCTTTGTTTCTATTTCGATGTACTA 57.931 33.333 0.00 0.00 0.00 1.82
61 62 7.416154 TTCGTCTTTGTTTCTATTTCGATGT 57.584 32.000 0.00 0.00 0.00 3.06
62 63 8.880768 ATTTCGTCTTTGTTTCTATTTCGATG 57.119 30.769 0.00 0.00 0.00 3.84
79 80 8.218488 AGGGCCTAATTCTTATTAATTTCGTCT 58.782 33.333 2.82 0.00 31.63 4.18
80 81 8.290325 CAGGGCCTAATTCTTATTAATTTCGTC 58.710 37.037 5.28 0.00 31.63 4.20
81 82 7.778382 ACAGGGCCTAATTCTTATTAATTTCGT 59.222 33.333 5.28 0.00 31.63 3.85
82 83 8.166422 ACAGGGCCTAATTCTTATTAATTTCG 57.834 34.615 5.28 0.00 31.63 3.46
83 84 9.967346 GAACAGGGCCTAATTCTTATTAATTTC 57.033 33.333 18.19 0.00 31.63 2.17
84 85 9.487442 TGAACAGGGCCTAATTCTTATTAATTT 57.513 29.630 23.20 0.00 31.63 1.82
86 87 8.282256 ACTGAACAGGGCCTAATTCTTATTAAT 58.718 33.333 23.20 0.00 0.00 1.40
89 90 5.888161 CACTGAACAGGGCCTAATTCTTATT 59.112 40.000 23.20 8.35 0.00 1.40
90 91 5.044846 ACACTGAACAGGGCCTAATTCTTAT 60.045 40.000 23.20 11.05 34.48 1.73
91 92 4.288626 ACACTGAACAGGGCCTAATTCTTA 59.711 41.667 23.20 9.33 34.48 2.10
94 95 3.010420 GACACTGAACAGGGCCTAATTC 58.990 50.000 18.49 18.49 34.48 2.17
95 96 2.290960 GGACACTGAACAGGGCCTAATT 60.291 50.000 5.28 3.27 34.48 1.40
96 97 1.282157 GGACACTGAACAGGGCCTAAT 59.718 52.381 5.28 0.00 34.48 1.73
97 98 0.690762 GGACACTGAACAGGGCCTAA 59.309 55.000 5.28 0.00 34.48 2.69
98 99 1.198759 GGGACACTGAACAGGGCCTA 61.199 60.000 5.28 0.00 34.48 3.93
99 100 2.529744 GGGACACTGAACAGGGCCT 61.530 63.158 0.00 0.00 34.48 5.19
100 101 2.034221 GGGACACTGAACAGGGCC 59.966 66.667 3.83 0.00 34.48 5.80
101 102 2.358737 CGGGACACTGAACAGGGC 60.359 66.667 3.83 0.00 34.48 5.19
102 103 2.172483 CTCCGGGACACTGAACAGGG 62.172 65.000 0.00 2.28 37.98 4.45
103 104 1.293498 CTCCGGGACACTGAACAGG 59.707 63.158 0.00 0.00 0.00 4.00
104 105 1.374758 GCTCCGGGACACTGAACAG 60.375 63.158 0.00 0.00 0.00 3.16
106 107 1.374758 CAGCTCCGGGACACTGAAC 60.375 63.158 14.45 0.00 31.67 3.18
108 109 2.997315 CCAGCTCCGGGACACTGA 60.997 66.667 19.27 0.00 31.67 3.41
109 110 3.314331 ACCAGCTCCGGGACACTG 61.314 66.667 13.17 13.17 0.00 3.66
110 111 3.314331 CACCAGCTCCGGGACACT 61.314 66.667 0.00 0.00 0.00 3.55
112 113 4.631740 TCCACCAGCTCCGGGACA 62.632 66.667 0.00 0.00 0.00 4.02
113 114 3.775654 CTCCACCAGCTCCGGGAC 61.776 72.222 0.00 0.00 0.00 4.46
122 123 2.839486 TTGAACTGTAGCTCCACCAG 57.161 50.000 0.00 0.00 0.00 4.00
123 124 3.788227 ATTTGAACTGTAGCTCCACCA 57.212 42.857 0.00 0.00 0.00 4.17
124 125 4.072131 TCAATTTGAACTGTAGCTCCACC 58.928 43.478 0.00 0.00 0.00 4.61
125 126 4.377431 CGTCAATTTGAACTGTAGCTCCAC 60.377 45.833 0.00 0.00 0.00 4.02
126 127 3.745975 CGTCAATTTGAACTGTAGCTCCA 59.254 43.478 0.00 0.00 0.00 3.86
127 128 3.125316 CCGTCAATTTGAACTGTAGCTCC 59.875 47.826 0.00 0.00 0.00 4.70
128 129 3.994392 TCCGTCAATTTGAACTGTAGCTC 59.006 43.478 0.00 0.00 0.00 4.09
129 130 3.997021 CTCCGTCAATTTGAACTGTAGCT 59.003 43.478 0.00 0.00 0.00 3.32
131 132 3.997021 AGCTCCGTCAATTTGAACTGTAG 59.003 43.478 0.00 0.00 0.00 2.74
132 133 4.002906 AGCTCCGTCAATTTGAACTGTA 57.997 40.909 0.00 0.00 0.00 2.74
133 134 2.851195 AGCTCCGTCAATTTGAACTGT 58.149 42.857 0.00 0.00 0.00 3.55
134 135 3.250762 TGAAGCTCCGTCAATTTGAACTG 59.749 43.478 0.00 0.00 0.00 3.16
136 137 3.896648 TGAAGCTCCGTCAATTTGAAC 57.103 42.857 0.00 0.00 0.00 3.18
138 139 5.452078 AAAATGAAGCTCCGTCAATTTGA 57.548 34.783 0.00 0.00 29.16 2.69
139 140 4.622740 GGAAAATGAAGCTCCGTCAATTTG 59.377 41.667 4.96 0.00 30.18 2.32
140 141 4.524328 AGGAAAATGAAGCTCCGTCAATTT 59.476 37.500 0.55 0.55 32.18 1.82
141 142 4.082125 AGGAAAATGAAGCTCCGTCAATT 58.918 39.130 0.00 0.00 34.22 2.32
142 143 3.690460 AGGAAAATGAAGCTCCGTCAAT 58.310 40.909 0.00 0.00 34.22 2.57
145 146 1.661112 CGAGGAAAATGAAGCTCCGTC 59.339 52.381 0.00 0.00 34.22 4.79
146 147 1.726853 CGAGGAAAATGAAGCTCCGT 58.273 50.000 0.00 0.00 34.22 4.69
147 148 0.375106 GCGAGGAAAATGAAGCTCCG 59.625 55.000 0.00 0.00 34.22 4.63
148 149 1.668237 GAGCGAGGAAAATGAAGCTCC 59.332 52.381 4.11 0.00 43.56 4.70
150 151 1.743996 GGAGCGAGGAAAATGAAGCT 58.256 50.000 0.00 0.00 37.69 3.74
151 152 0.375106 CGGAGCGAGGAAAATGAAGC 59.625 55.000 0.00 0.00 0.00 3.86
169 170 1.815421 CCAACTCCCGGAATCTGCG 60.815 63.158 0.73 0.00 0.00 5.18
171 172 0.392998 CCACCAACTCCCGGAATCTG 60.393 60.000 0.73 0.00 0.00 2.90
172 173 0.546747 TCCACCAACTCCCGGAATCT 60.547 55.000 0.73 0.00 0.00 2.40
173 174 0.546598 ATCCACCAACTCCCGGAATC 59.453 55.000 0.73 0.00 0.00 2.52
174 175 0.999712 AATCCACCAACTCCCGGAAT 59.000 50.000 0.73 0.00 0.00 3.01
177 178 3.471354 GTAATCCACCAACTCCCGG 57.529 57.895 0.00 0.00 0.00 5.73
187 188 1.209747 GGACCCTGTCTGGTAATCCAC 59.790 57.143 6.23 0.00 39.24 4.02
188 189 1.080498 AGGACCCTGTCTGGTAATCCA 59.920 52.381 11.32 0.00 39.24 3.41
189 190 1.880941 AGGACCCTGTCTGGTAATCC 58.119 55.000 0.00 0.00 39.24 3.01
190 191 4.902448 AGATTAGGACCCTGTCTGGTAATC 59.098 45.833 0.00 7.96 39.24 1.75
192 193 4.348020 AGATTAGGACCCTGTCTGGTAA 57.652 45.455 0.00 0.00 39.24 2.85
193 194 4.030913 CAAGATTAGGACCCTGTCTGGTA 58.969 47.826 0.00 0.00 39.24 3.25
194 195 2.840651 CAAGATTAGGACCCTGTCTGGT 59.159 50.000 0.00 0.00 42.79 4.00
195 196 2.420687 GCAAGATTAGGACCCTGTCTGG 60.421 54.545 0.00 1.74 32.47 3.86
196 197 2.237143 TGCAAGATTAGGACCCTGTCTG 59.763 50.000 0.00 0.50 32.47 3.51
197 198 2.503356 CTGCAAGATTAGGACCCTGTCT 59.497 50.000 0.00 0.00 34.07 3.41
198 199 2.911484 CTGCAAGATTAGGACCCTGTC 58.089 52.381 0.00 0.00 34.07 3.51
199 200 1.065126 GCTGCAAGATTAGGACCCTGT 60.065 52.381 0.00 0.00 34.07 4.00
203 204 2.877168 CTCATGCTGCAAGATTAGGACC 59.123 50.000 6.36 0.00 34.07 4.46
204 205 3.801698 TCTCATGCTGCAAGATTAGGAC 58.198 45.455 6.36 0.00 34.07 3.85
207 208 4.639310 AGGTTTCTCATGCTGCAAGATTAG 59.361 41.667 6.36 0.00 34.07 1.73
209 210 3.428532 AGGTTTCTCATGCTGCAAGATT 58.571 40.909 6.36 0.00 34.07 2.40
210 211 3.015327 GAGGTTTCTCATGCTGCAAGAT 58.985 45.455 6.36 0.00 39.74 2.40
211 212 2.039480 AGAGGTTTCTCATGCTGCAAGA 59.961 45.455 6.36 6.96 42.34 3.02
212 213 2.434428 AGAGGTTTCTCATGCTGCAAG 58.566 47.619 6.36 1.39 42.34 4.01
213 214 2.574006 AGAGGTTTCTCATGCTGCAA 57.426 45.000 6.36 0.00 42.34 4.08
215 216 1.742268 GGAAGAGGTTTCTCATGCTGC 59.258 52.381 0.00 0.00 42.34 5.25
216 217 3.269178 GAGGAAGAGGTTTCTCATGCTG 58.731 50.000 0.00 0.00 39.02 4.41
218 219 3.340814 TGAGGAAGAGGTTTCTCATGC 57.659 47.619 0.00 0.00 42.55 4.06
221 222 3.648067 ACATGTGAGGAAGAGGTTTCTCA 59.352 43.478 0.00 0.00 44.84 3.27
222 223 4.249661 GACATGTGAGGAAGAGGTTTCTC 58.750 47.826 1.15 0.00 38.66 2.87
223 224 3.008485 GGACATGTGAGGAAGAGGTTTCT 59.992 47.826 1.15 0.00 34.29 2.52
224 225 3.339141 GGACATGTGAGGAAGAGGTTTC 58.661 50.000 1.15 0.00 0.00 2.78
225 226 2.040412 GGGACATGTGAGGAAGAGGTTT 59.960 50.000 1.15 0.00 0.00 3.27
226 227 1.630878 GGGACATGTGAGGAAGAGGTT 59.369 52.381 1.15 0.00 0.00 3.50
227 228 1.203364 AGGGACATGTGAGGAAGAGGT 60.203 52.381 1.15 0.00 0.00 3.85
229 230 3.515502 TGTTAGGGACATGTGAGGAAGAG 59.484 47.826 1.15 0.00 32.00 2.85
231 232 3.981071 TGTTAGGGACATGTGAGGAAG 57.019 47.619 1.15 0.00 32.00 3.46
232 233 4.104102 ACTTTGTTAGGGACATGTGAGGAA 59.896 41.667 1.15 0.00 38.26 3.36
233 234 3.650942 ACTTTGTTAGGGACATGTGAGGA 59.349 43.478 1.15 0.00 38.26 3.71
234 235 4.021102 ACTTTGTTAGGGACATGTGAGG 57.979 45.455 1.15 0.00 38.26 3.86
235 236 7.504924 TTTAACTTTGTTAGGGACATGTGAG 57.495 36.000 1.15 0.00 38.26 3.51
236 237 7.883391 TTTTAACTTTGTTAGGGACATGTGA 57.117 32.000 1.15 0.00 38.26 3.58
278 279 3.976793 ATTATGTCATGCGCTGGAAAG 57.023 42.857 9.73 0.00 0.00 2.62
281 282 4.511454 GTCTAAATTATGTCATGCGCTGGA 59.489 41.667 9.73 2.67 0.00 3.86
284 285 4.273480 GTGGTCTAAATTATGTCATGCGCT 59.727 41.667 9.73 0.00 0.00 5.92
286 287 5.991328 AGTGGTCTAAATTATGTCATGCG 57.009 39.130 0.00 0.00 0.00 4.73
292 293 8.946085 CATGTACACAAGTGGTCTAAATTATGT 58.054 33.333 0.00 0.00 34.19 2.29
311 312 0.036164 ACGCTTTCAGCCCATGTACA 59.964 50.000 0.00 0.00 38.18 2.90
330 331 3.349927 CCAAGTCCATGAGATGCTTCAA 58.650 45.455 0.00 0.00 0.00 2.69
337 338 1.528824 CGGCCCAAGTCCATGAGAT 59.471 57.895 0.00 0.00 0.00 2.75
339 340 2.124570 CCGGCCCAAGTCCATGAG 60.125 66.667 0.00 0.00 0.00 2.90
355 356 1.933853 CTGTATACTTGACGCTTGGCC 59.066 52.381 4.17 0.00 0.00 5.36
357 358 2.604914 CTGCTGTATACTTGACGCTTGG 59.395 50.000 4.17 0.00 0.00 3.61
358 359 3.511699 TCTGCTGTATACTTGACGCTTG 58.488 45.455 4.17 0.00 0.00 4.01
359 360 3.868757 TCTGCTGTATACTTGACGCTT 57.131 42.857 4.17 0.00 0.00 4.68
360 361 3.512680 GTTCTGCTGTATACTTGACGCT 58.487 45.455 4.17 0.00 0.00 5.07
368 369 3.127030 GCTTGGTTGGTTCTGCTGTATAC 59.873 47.826 0.00 0.00 0.00 1.47
399 400 2.035704 CGGAGTGATGGAGATTCTGGAG 59.964 54.545 0.00 0.00 0.00 3.86
403 404 0.755686 GCCGGAGTGATGGAGATTCT 59.244 55.000 5.05 0.00 0.00 2.40
405 406 0.911769 TTGCCGGAGTGATGGAGATT 59.088 50.000 5.05 0.00 0.00 2.40
436 437 0.038251 GGTTTAGCTGGTGGCAAAGC 60.038 55.000 13.99 13.99 44.79 3.51
437 438 1.541588 GAGGTTTAGCTGGTGGCAAAG 59.458 52.381 0.00 0.00 44.79 2.77
438 439 1.616159 GAGGTTTAGCTGGTGGCAAA 58.384 50.000 0.00 0.00 44.79 3.68
455 492 1.352404 GTGGACGAGATCGACGGAG 59.648 63.158 9.58 0.00 43.02 4.63
467 504 1.736645 GTGGTCATGGTCGTGGACG 60.737 63.158 0.00 0.00 41.45 4.79
479 516 2.692741 TGGTGGTGGTGGTGGTCA 60.693 61.111 0.00 0.00 0.00 4.02
480 517 2.203294 GTGGTGGTGGTGGTGGTC 60.203 66.667 0.00 0.00 0.00 4.02
483 520 2.518349 GTGGTGGTGGTGGTGGTG 60.518 66.667 0.00 0.00 0.00 4.17
485 522 4.947147 CGGTGGTGGTGGTGGTGG 62.947 72.222 0.00 0.00 0.00 4.61
490 527 3.633116 GGTAGCGGTGGTGGTGGT 61.633 66.667 0.00 0.00 0.00 4.16
618 670 1.397672 TGGTTGTGGTTGTGATGGTG 58.602 50.000 0.00 0.00 0.00 4.17
633 691 2.282180 GCGGTGGTGGTGATGGTT 60.282 61.111 0.00 0.00 0.00 3.67
652 710 1.601759 CAGCAGAGGTGGTTGGTGG 60.602 63.158 0.00 0.00 38.71 4.61
685 755 0.185416 TCCTGTCCGAGGGAGGATAC 59.815 60.000 6.70 0.00 43.06 2.24
712 782 1.104577 AGGCGGAGGAAGATCTCGAC 61.105 60.000 0.00 0.00 34.74 4.20
852 922 1.469940 CCGTCGATGTTGAGGAAGAGG 60.470 57.143 3.52 0.00 0.00 3.69
979 1052 1.368579 CACCCCAGGTCGTTAACGT 59.631 57.895 25.98 5.83 40.80 3.99
983 1056 0.611200 CATGACACCCCAGGTCGTTA 59.389 55.000 0.00 0.00 38.10 3.18
984 1057 1.374947 CATGACACCCCAGGTCGTT 59.625 57.895 0.00 0.00 38.10 3.85
1046 1119 3.050275 GCTTGTCCACTGACGGCC 61.050 66.667 0.00 0.00 44.86 6.13
1048 1121 2.358737 GGGCTTGTCCACTGACGG 60.359 66.667 0.00 0.00 44.86 4.79
1049 1122 1.374758 GAGGGCTTGTCCACTGACG 60.375 63.158 0.00 0.00 44.86 4.35
1050 1123 1.003233 GGAGGGCTTGTCCACTGAC 60.003 63.158 0.00 0.00 42.12 3.51
1052 1125 2.046892 CGGAGGGCTTGTCCACTG 60.047 66.667 0.00 0.00 36.21 3.66
1053 1126 2.526873 ACGGAGGGCTTGTCCACT 60.527 61.111 0.00 0.00 36.21 4.00
1055 1128 3.691342 CGACGGAGGGCTTGTCCA 61.691 66.667 0.00 0.00 36.21 4.02
1123 1196 1.247567 CGTTTCCCAGCCTTGACATT 58.752 50.000 0.00 0.00 0.00 2.71
1139 1227 0.110373 GAAGGCGAAATTGCGACGTT 60.110 50.000 10.87 8.81 45.90 3.99
1209 1297 1.663379 TATCCCCGCAGACACAGACG 61.663 60.000 0.00 0.00 0.00 4.18
1223 1311 2.699321 AGACGAACCCTTAGCTTATCCC 59.301 50.000 0.00 0.00 0.00 3.85
1232 1320 1.926511 GACGGCGAGACGAACCCTTA 61.927 60.000 16.62 0.00 37.61 2.69
1243 1333 2.100603 GGACGAGAAGACGGCGAG 59.899 66.667 16.62 0.00 42.77 5.03
1300 1397 6.093495 CCAAACTTTAGATTCTTGCGTCCATA 59.907 38.462 0.00 0.00 0.00 2.74
1301 1398 5.106157 CCAAACTTTAGATTCTTGCGTCCAT 60.106 40.000 0.00 0.00 0.00 3.41
1307 1404 6.152379 CCAGAACCAAACTTTAGATTCTTGC 58.848 40.000 0.00 0.00 0.00 4.01
1311 1408 5.009610 TGTGCCAGAACCAAACTTTAGATTC 59.990 40.000 0.00 0.00 0.00 2.52
1314 1411 3.630312 GTGTGCCAGAACCAAACTTTAGA 59.370 43.478 0.00 0.00 0.00 2.10
1327 1424 1.293179 CATCCACGAGTGTGCCAGA 59.707 57.895 2.36 0.00 45.04 3.86
1335 1432 1.056660 AAACAGACCCATCCACGAGT 58.943 50.000 0.00 0.00 0.00 4.18
1338 1435 2.346803 CAGTAAACAGACCCATCCACG 58.653 52.381 0.00 0.00 0.00 4.94
1393 1490 2.224042 TGATATCCATGGTCGCAGTGTC 60.224 50.000 12.58 1.28 0.00 3.67
1416 1513 1.122019 GCGGGGGTAGATCCACAGAT 61.122 60.000 0.00 0.00 42.53 2.90
1520 1629 0.804989 GCGGGTCCAAACATGAAGAG 59.195 55.000 0.00 0.00 0.00 2.85
1521 1630 0.953471 CGCGGGTCCAAACATGAAGA 60.953 55.000 0.00 0.00 0.00 2.87
1587 1696 6.156775 TGATCCTATCAATTTCACTCAGACCA 59.843 38.462 0.00 0.00 36.11 4.02
1589 1698 7.271511 AGTGATCCTATCAATTTCACTCAGAC 58.728 38.462 1.68 0.00 42.40 3.51
1591 1700 9.205719 CATAGTGATCCTATCAATTTCACTCAG 57.794 37.037 9.40 2.18 44.27 3.35
1615 1763 3.083997 GTCGCCCTCCAGGTCCAT 61.084 66.667 0.00 0.00 38.26 3.41
1636 1784 1.272769 AGACCTAACCTGCACGACTTC 59.727 52.381 0.00 0.00 0.00 3.01
1641 1789 0.537188 ATCCAGACCTAACCTGCACG 59.463 55.000 0.00 0.00 0.00 5.34
1677 1825 0.597568 CAACGGGTGTCATGCATGTT 59.402 50.000 25.43 8.51 0.00 2.71
1698 1846 0.613260 AGAACCAGCAGCGGAATGTA 59.387 50.000 9.87 0.00 0.00 2.29
1702 1850 0.320771 GAGAAGAACCAGCAGCGGAA 60.321 55.000 9.87 0.00 0.00 4.30
1737 1885 3.617531 CGACCAGTAACTCAAGCTCCATT 60.618 47.826 0.00 0.00 0.00 3.16
1777 1925 3.596214 CCATAATATACGGACAGGCACC 58.404 50.000 0.00 0.00 0.00 5.01
1836 1987 3.403038 AGAACCTTCAACTTCATGTCCG 58.597 45.455 0.00 0.00 0.00 4.79
1860 2014 4.081406 TGATAAACAACTGCAGGCTTCAT 58.919 39.130 19.93 3.68 0.00 2.57
1866 2020 4.818546 CCTCCTATGATAAACAACTGCAGG 59.181 45.833 19.93 3.21 0.00 4.85
1885 2041 6.462909 CCCATAAACTTCCATAAATTGCCTCC 60.463 42.308 0.00 0.00 0.00 4.30
1959 2132 5.662208 TGATATCCCAGTTTTCAATGCCAAT 59.338 36.000 0.00 0.00 0.00 3.16
2041 2249 6.204688 CACTAACTGCAGAACTGAACCAATAA 59.795 38.462 23.35 0.00 0.00 1.40
2049 2257 6.054941 TCAAATTCACTAACTGCAGAACTGA 58.945 36.000 23.35 11.91 0.00 3.41
2061 2269 9.690913 AATCTGATCTTCCATCAAATTCACTAA 57.309 29.630 0.00 0.00 0.00 2.24
2072 2280 7.168972 CAGTAGACGAAAATCTGATCTTCCATC 59.831 40.741 0.00 0.00 0.00 3.51
2082 2290 5.597813 AGTTTGCAGTAGACGAAAATCTG 57.402 39.130 0.00 0.00 0.00 2.90
2083 2291 6.483640 AGAAAGTTTGCAGTAGACGAAAATCT 59.516 34.615 0.00 0.00 0.00 2.40
2091 2299 3.251004 CCCACAGAAAGTTTGCAGTAGAC 59.749 47.826 0.00 0.00 0.00 2.59
2095 2303 2.435372 TCCCACAGAAAGTTTGCAGT 57.565 45.000 0.00 0.00 0.00 4.40
2127 2340 5.711976 ACAAATTAGTCCTAGCTGCAAATGT 59.288 36.000 1.02 0.00 0.00 2.71
2142 2355 6.630071 ACACAAACTGCAGAAACAAATTAGT 58.370 32.000 23.35 2.59 0.00 2.24
2145 2358 6.204495 ACAAACACAAACTGCAGAAACAAATT 59.796 30.769 23.35 4.98 0.00 1.82
2149 2362 4.233789 GACAAACACAAACTGCAGAAACA 58.766 39.130 23.35 0.00 0.00 2.83
2151 2364 3.509575 AGGACAAACACAAACTGCAGAAA 59.490 39.130 23.35 0.00 0.00 2.52
2153 2366 2.722094 AGGACAAACACAAACTGCAGA 58.278 42.857 23.35 0.00 0.00 4.26
2154 2367 3.508744 AAGGACAAACACAAACTGCAG 57.491 42.857 13.48 13.48 0.00 4.41
2156 2369 6.238076 CCAAATAAAGGACAAACACAAACTGC 60.238 38.462 0.00 0.00 0.00 4.40
2157 2370 7.038659 TCCAAATAAAGGACAAACACAAACTG 58.961 34.615 0.00 0.00 0.00 3.16
2172 2403 6.149633 CAGTCCCGTTTTTCTCCAAATAAAG 58.850 40.000 0.00 0.00 0.00 1.85
2180 2411 2.289506 ACTAGCAGTCCCGTTTTTCTCC 60.290 50.000 0.00 0.00 0.00 3.71
2190 2421 2.303311 ACTTTCCAGAACTAGCAGTCCC 59.697 50.000 0.00 0.00 0.00 4.46
2234 2467 7.592938 TCATTTTTCGAACTTTATGCACATCT 58.407 30.769 0.00 0.00 0.00 2.90
2258 2491 7.977853 AGAATCACTGGTGCATATCAAAATTTC 59.022 33.333 0.00 0.00 0.00 2.17
2261 2494 8.408601 GTTAGAATCACTGGTGCATATCAAAAT 58.591 33.333 0.00 0.00 0.00 1.82
2276 2509 6.380079 ACAGGGAATCTTGTTAGAATCACT 57.620 37.500 0.00 0.00 43.38 3.41
2358 2678 3.181521 GCACAACAAAGAACAAACAAGGC 60.182 43.478 0.00 0.00 0.00 4.35
2364 2684 1.989165 GTGCGCACAACAAAGAACAAA 59.011 42.857 34.52 0.00 0.00 2.83
2418 2763 7.007723 ACAAAAGTAAGGTGGGAACATATTCA 58.992 34.615 0.00 0.00 46.14 2.57
2420 2765 6.210584 CCACAAAAGTAAGGTGGGAACATATT 59.789 38.462 0.00 0.00 46.51 1.28
2435 2785 2.948979 CAACTGAGCCACCACAAAAGTA 59.051 45.455 0.00 0.00 0.00 2.24
2437 2787 1.536709 GCAACTGAGCCACCACAAAAG 60.537 52.381 0.00 0.00 0.00 2.27
2451 2801 5.591643 ACAAGTATAACAAGTCGCAACTG 57.408 39.130 0.00 0.00 35.36 3.16
2453 2803 8.225107 TGAAATACAAGTATAACAAGTCGCAAC 58.775 33.333 0.00 0.00 0.00 4.17
2502 2853 7.235079 TCTCTGATATCTAGTCAAGTAAGGGG 58.765 42.308 3.98 0.00 0.00 4.79
2523 2875 6.814043 ACGGTAACTACTTTCAAAACTCTCT 58.186 36.000 0.00 0.00 0.00 3.10
2544 2896 6.808212 AGATGAAGAAATAATGCAACAAACGG 59.192 34.615 0.00 0.00 0.00 4.44
2545 2897 7.660059 CAGATGAAGAAATAATGCAACAAACG 58.340 34.615 0.00 0.00 0.00 3.60
2564 2916 4.580167 AGCAAAACAGTAAACAGCAGATGA 59.420 37.500 0.00 0.00 0.00 2.92
2592 2960 7.717875 ACTGAACATAAACTGGTAGCAGTTAAA 59.282 33.333 33.78 25.92 43.83 1.52
2624 2992 6.072112 ACATAGTTGACGCTTGACATTTTT 57.928 33.333 0.00 0.00 0.00 1.94
2679 3053 6.610741 AAAAACACAACAACTTTCTTGCAA 57.389 29.167 0.00 0.00 0.00 4.08
2715 3089 6.729187 ACTTGTGCAATTCACTCTTCTAAAC 58.271 36.000 0.00 0.00 45.81 2.01
2716 3090 6.942532 ACTTGTGCAATTCACTCTTCTAAA 57.057 33.333 0.00 0.00 45.81 1.85
2717 3091 6.728200 CAACTTGTGCAATTCACTCTTCTAA 58.272 36.000 0.00 0.00 45.81 2.10
2718 3092 6.304356 CAACTTGTGCAATTCACTCTTCTA 57.696 37.500 0.00 0.00 45.81 2.10
2741 3116 3.574284 TGGTGCAATGTTTCAGTATGC 57.426 42.857 0.00 0.00 37.52 3.14
2745 3120 2.102925 CCCTTTGGTGCAATGTTTCAGT 59.897 45.455 0.00 0.00 0.00 3.41
2807 3206 1.771255 CCAAGCTCCCCTGCTACTATT 59.229 52.381 0.00 0.00 43.24 1.73
2809 3208 1.338136 GCCAAGCTCCCCTGCTACTA 61.338 60.000 0.00 0.00 43.24 1.82
2810 3209 2.674220 GCCAAGCTCCCCTGCTACT 61.674 63.158 0.00 0.00 43.24 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.