Multiple sequence alignment - TraesCS5A01G552400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G552400 chr5A 100.000 3002 0 0 1 3002 705404281 705401280 0.000000e+00 5544.0
1 TraesCS5A01G552400 chr5A 90.166 1444 83 34 736 2157 705349782 705348376 0.000000e+00 1825.0
2 TraesCS5A01G552400 chr5A 85.486 813 90 22 2211 3002 705348378 705347573 0.000000e+00 822.0
3 TraesCS5A01G552400 chr5A 94.737 209 11 0 309 517 52001461 52001669 2.890000e-85 326.0
4 TraesCS5A01G552400 chr5A 78.253 538 82 18 2399 2902 41047712 41047176 2.250000e-81 313.0
5 TraesCS5A01G552400 chr5A 95.385 195 9 0 315 509 65430277 65430083 8.080000e-81 311.0
6 TraesCS5A01G552400 chr5A 94.472 199 11 0 311 509 433756036 433756234 1.050000e-79 307.0
7 TraesCS5A01G552400 chr5A 81.657 169 21 6 2401 2559 574731794 574731962 6.750000e-27 132.0
8 TraesCS5A01G552400 chr5A 82.857 70 11 1 2333 2402 639294604 639294536 8.990000e-06 62.1
9 TraesCS5A01G552400 chrUn 91.046 2189 127 29 616 2766 108595492 108597649 0.000000e+00 2892.0
10 TraesCS5A01G552400 chrUn 88.919 1462 111 25 727 2183 108614765 108613350 0.000000e+00 1755.0
11 TraesCS5A01G552400 chrUn 84.884 172 22 3 2399 2570 24295102 24295269 1.430000e-38 171.0
12 TraesCS5A01G552400 chrUn 83.750 160 18 5 162 314 108595287 108595445 8.670000e-31 145.0
13 TraesCS5A01G552400 chr2A 85.695 1489 141 37 725 2184 19164434 19162989 0.000000e+00 1504.0
14 TraesCS5A01G552400 chr2A 82.099 162 27 2 2420 2581 18025939 18026098 1.450000e-28 137.0
15 TraesCS5A01G552400 chr2B 84.787 1525 167 38 725 2221 29118742 29120229 0.000000e+00 1471.0
16 TraesCS5A01G552400 chr2D 85.345 1433 140 43 705 2108 18170245 18168854 0.000000e+00 1419.0
17 TraesCS5A01G552400 chr2D 77.344 512 86 16 2401 2900 473433023 473433516 2.950000e-70 276.0
18 TraesCS5A01G552400 chr2D 76.879 519 76 24 2406 2888 14715636 14716146 1.380000e-63 254.0
19 TraesCS5A01G552400 chr2D 75.752 532 93 19 2401 2900 17806702 17807229 5.000000e-58 235.0
20 TraesCS5A01G552400 chr3B 90.363 1048 94 4 995 2040 40773328 40774370 0.000000e+00 1369.0
21 TraesCS5A01G552400 chr4D 85.943 1309 149 26 889 2185 323098065 323096780 0.000000e+00 1365.0
22 TraesCS5A01G552400 chr6B 86.809 1175 130 20 837 1998 694258812 694259974 0.000000e+00 1288.0
23 TraesCS5A01G552400 chr4B 95.897 195 8 0 315 509 130063537 130063343 1.740000e-82 316.0
24 TraesCS5A01G552400 chr4B 86.857 175 21 2 1932 2105 665388709 665388882 8.490000e-46 195.0
25 TraesCS5A01G552400 chr7D 95.431 197 9 0 313 509 161016049 161015853 6.250000e-82 315.0
26 TraesCS5A01G552400 chr7B 94.975 199 10 0 312 510 417701429 417701627 2.250000e-81 313.0
27 TraesCS5A01G552400 chr7B 77.539 512 76 20 2398 2875 640795865 640796371 3.810000e-69 272.0
28 TraesCS5A01G552400 chr7B 74.952 519 87 28 2399 2878 532292770 532293284 6.560000e-47 198.0
29 TraesCS5A01G552400 chr5D 93.750 208 13 0 311 518 476279326 476279533 2.250000e-81 313.0
30 TraesCS5A01G552400 chr5D 77.457 519 85 20 2401 2888 457668831 457669348 6.340000e-72 281.0
31 TraesCS5A01G552400 chr5D 77.809 356 44 20 2399 2720 10903208 10902854 1.420000e-43 187.0
32 TraesCS5A01G552400 chr1A 95.408 196 9 0 315 510 27492667 27492472 2.250000e-81 313.0
33 TraesCS5A01G552400 chr1A 95.385 195 9 0 315 509 329551780 329551974 8.080000e-81 311.0
34 TraesCS5A01G552400 chr1A 73.566 488 85 26 2447 2899 499198212 499198690 2.410000e-31 147.0
35 TraesCS5A01G552400 chr5B 77.694 529 77 21 2399 2891 373512005 373512528 4.900000e-73 285.0
36 TraesCS5A01G552400 chr5B 85.000 80 11 1 2492 2570 558614455 558614534 2.480000e-11 80.5
37 TraesCS5A01G552400 chr1D 77.344 512 78 19 2402 2878 363798989 363798481 4.930000e-68 268.0
38 TraesCS5A01G552400 chr1D 80.442 317 61 1 2589 2905 469610446 469610131 1.080000e-59 241.0
39 TraesCS5A01G552400 chr1D 75.728 515 87 22 2399 2878 357448418 357447907 1.080000e-54 224.0
40 TraesCS5A01G552400 chr6A 81.366 322 55 4 2576 2896 53584840 53585157 1.070000e-64 257.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G552400 chr5A 705401280 705404281 3001 True 5544.0 5544 100.000 1 3002 1 chr5A.!!$R4 3001
1 TraesCS5A01G552400 chr5A 705347573 705349782 2209 True 1323.5 1825 87.826 736 3002 2 chr5A.!!$R5 2266
2 TraesCS5A01G552400 chr5A 41047176 41047712 536 True 313.0 313 78.253 2399 2902 1 chr5A.!!$R1 503
3 TraesCS5A01G552400 chrUn 108613350 108614765 1415 True 1755.0 1755 88.919 727 2183 1 chrUn.!!$R1 1456
4 TraesCS5A01G552400 chrUn 108595287 108597649 2362 False 1518.5 2892 87.398 162 2766 2 chrUn.!!$F2 2604
5 TraesCS5A01G552400 chr2A 19162989 19164434 1445 True 1504.0 1504 85.695 725 2184 1 chr2A.!!$R1 1459
6 TraesCS5A01G552400 chr2B 29118742 29120229 1487 False 1471.0 1471 84.787 725 2221 1 chr2B.!!$F1 1496
7 TraesCS5A01G552400 chr2D 18168854 18170245 1391 True 1419.0 1419 85.345 705 2108 1 chr2D.!!$R1 1403
8 TraesCS5A01G552400 chr2D 14715636 14716146 510 False 254.0 254 76.879 2406 2888 1 chr2D.!!$F1 482
9 TraesCS5A01G552400 chr2D 17806702 17807229 527 False 235.0 235 75.752 2401 2900 1 chr2D.!!$F2 499
10 TraesCS5A01G552400 chr3B 40773328 40774370 1042 False 1369.0 1369 90.363 995 2040 1 chr3B.!!$F1 1045
11 TraesCS5A01G552400 chr4D 323096780 323098065 1285 True 1365.0 1365 85.943 889 2185 1 chr4D.!!$R1 1296
12 TraesCS5A01G552400 chr6B 694258812 694259974 1162 False 1288.0 1288 86.809 837 1998 1 chr6B.!!$F1 1161
13 TraesCS5A01G552400 chr7B 640795865 640796371 506 False 272.0 272 77.539 2398 2875 1 chr7B.!!$F3 477
14 TraesCS5A01G552400 chr5D 457668831 457669348 517 False 281.0 281 77.457 2401 2888 1 chr5D.!!$F1 487
15 TraesCS5A01G552400 chr5B 373512005 373512528 523 False 285.0 285 77.694 2399 2891 1 chr5B.!!$F1 492
16 TraesCS5A01G552400 chr1D 363798481 363798989 508 True 268.0 268 77.344 2402 2878 1 chr1D.!!$R2 476
17 TraesCS5A01G552400 chr1D 357447907 357448418 511 True 224.0 224 75.728 2399 2878 1 chr1D.!!$R1 479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 385 0.172803 ATCGCTTACCGTGGTCTGAC 59.827 55.0 0.0 0.0 38.35 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2120 0.583438 CATTATTGTCCGCTGGCGAG 59.417 55.0 16.79 6.82 42.83 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.778334 AAAAATTGTTCTTCGCCCGC 58.222 45.000 0.00 0.00 0.00 6.13
28 29 0.671251 AAAATTGTTCTTCGCCCGCA 59.329 45.000 0.00 0.00 0.00 5.69
29 30 0.240945 AAATTGTTCTTCGCCCGCAG 59.759 50.000 0.00 0.00 0.00 5.18
30 31 0.605319 AATTGTTCTTCGCCCGCAGA 60.605 50.000 0.00 0.00 0.00 4.26
31 32 0.392998 ATTGTTCTTCGCCCGCAGAT 60.393 50.000 0.00 0.00 0.00 2.90
32 33 0.248012 TTGTTCTTCGCCCGCAGATA 59.752 50.000 0.00 0.00 0.00 1.98
33 34 0.248012 TGTTCTTCGCCCGCAGATAA 59.752 50.000 0.00 0.00 0.00 1.75
34 35 1.134521 TGTTCTTCGCCCGCAGATAAT 60.135 47.619 0.00 0.00 0.00 1.28
35 36 1.261619 GTTCTTCGCCCGCAGATAATG 59.738 52.381 0.00 0.00 0.00 1.90
36 37 0.750249 TCTTCGCCCGCAGATAATGA 59.250 50.000 0.00 0.00 0.00 2.57
37 38 1.138069 TCTTCGCCCGCAGATAATGAA 59.862 47.619 0.00 0.00 0.00 2.57
38 39 1.528586 CTTCGCCCGCAGATAATGAAG 59.471 52.381 0.00 0.00 0.00 3.02
39 40 0.249868 TCGCCCGCAGATAATGAAGG 60.250 55.000 0.00 0.00 0.00 3.46
40 41 0.249868 CGCCCGCAGATAATGAAGGA 60.250 55.000 0.00 0.00 31.96 3.36
41 42 1.609061 CGCCCGCAGATAATGAAGGAT 60.609 52.381 0.00 0.00 31.96 3.24
42 43 2.353704 CGCCCGCAGATAATGAAGGATA 60.354 50.000 0.00 0.00 31.96 2.59
43 44 3.679917 CGCCCGCAGATAATGAAGGATAT 60.680 47.826 0.00 0.00 31.96 1.63
44 45 4.265073 GCCCGCAGATAATGAAGGATATT 58.735 43.478 0.00 0.00 31.96 1.28
45 46 4.095483 GCCCGCAGATAATGAAGGATATTG 59.905 45.833 0.00 0.00 31.96 1.90
46 47 4.637534 CCCGCAGATAATGAAGGATATTGG 59.362 45.833 0.00 0.00 31.96 3.16
47 48 5.491070 CCGCAGATAATGAAGGATATTGGA 58.509 41.667 0.00 0.00 31.96 3.53
48 49 5.939883 CCGCAGATAATGAAGGATATTGGAA 59.060 40.000 0.00 0.00 31.96 3.53
49 50 6.600822 CCGCAGATAATGAAGGATATTGGAAT 59.399 38.462 0.00 0.00 31.96 3.01
50 51 7.121759 CCGCAGATAATGAAGGATATTGGAATT 59.878 37.037 0.00 0.00 31.96 2.17
51 52 8.180267 CGCAGATAATGAAGGATATTGGAATTC 58.820 37.037 0.00 0.00 0.00 2.17
52 53 8.465201 GCAGATAATGAAGGATATTGGAATTCC 58.535 37.037 18.17 18.17 0.00 3.01
53 54 8.964772 CAGATAATGAAGGATATTGGAATTCCC 58.035 37.037 21.90 5.60 34.29 3.97
54 55 7.831193 AGATAATGAAGGATATTGGAATTCCCG 59.169 37.037 21.90 0.00 37.93 5.14
55 56 5.582950 ATGAAGGATATTGGAATTCCCGA 57.417 39.130 21.90 10.87 37.93 5.14
56 57 5.381184 TGAAGGATATTGGAATTCCCGAA 57.619 39.130 21.90 10.74 37.93 4.30
57 58 5.952387 TGAAGGATATTGGAATTCCCGAAT 58.048 37.500 21.90 16.88 37.93 3.34
58 59 6.372931 TGAAGGATATTGGAATTCCCGAATT 58.627 36.000 21.90 7.43 43.14 2.17
69 70 2.346766 TCCCGAATTCACATGGGATG 57.653 50.000 13.22 0.00 45.66 3.51
70 71 1.563879 TCCCGAATTCACATGGGATGT 59.436 47.619 13.22 0.00 45.66 3.06
77 78 4.440145 ACATGGGATGTGGGTTGC 57.560 55.556 0.00 0.00 43.01 4.17
78 79 1.305213 ACATGGGATGTGGGTTGCC 60.305 57.895 0.00 0.00 43.01 4.52
79 80 1.305129 CATGGGATGTGGGTTGCCA 60.305 57.895 0.00 0.00 39.06 4.92
80 81 1.305213 ATGGGATGTGGGTTGCCAC 60.305 57.895 0.00 0.00 37.41 5.01
81 82 2.679996 GGGATGTGGGTTGCCACC 60.680 66.667 0.00 0.00 43.37 4.61
82 83 2.117206 GGATGTGGGTTGCCACCA 59.883 61.111 9.52 0.00 46.43 4.17
87 88 4.217210 TGGGTTGCCACCACAGGG 62.217 66.667 9.52 0.00 46.43 4.45
88 89 4.994756 GGGTTGCCACCACAGGGG 62.995 72.222 9.52 0.00 46.43 4.79
99 100 1.905637 CCACAGGGGTTAACCAGTTC 58.094 55.000 25.71 11.81 42.91 3.01
100 101 1.546998 CCACAGGGGTTAACCAGTTCC 60.547 57.143 25.71 16.96 42.91 3.62
101 102 1.423921 CACAGGGGTTAACCAGTTCCT 59.576 52.381 25.71 18.87 42.91 3.36
102 103 2.640826 CACAGGGGTTAACCAGTTCCTA 59.359 50.000 25.71 0.00 42.91 2.94
103 104 3.265995 CACAGGGGTTAACCAGTTCCTAT 59.734 47.826 25.71 9.64 42.91 2.57
104 105 4.472108 CACAGGGGTTAACCAGTTCCTATA 59.528 45.833 25.71 0.00 42.91 1.31
105 106 4.720273 ACAGGGGTTAACCAGTTCCTATAG 59.280 45.833 25.71 12.82 42.91 1.31
106 107 4.966805 CAGGGGTTAACCAGTTCCTATAGA 59.033 45.833 25.71 0.00 42.91 1.98
107 108 4.967442 AGGGGTTAACCAGTTCCTATAGAC 59.033 45.833 25.71 3.73 42.91 2.59
108 109 4.202192 GGGGTTAACCAGTTCCTATAGACG 60.202 50.000 25.71 0.00 42.91 4.18
109 110 4.366586 GGTTAACCAGTTCCTATAGACGC 58.633 47.826 20.12 0.00 35.64 5.19
110 111 2.865343 AACCAGTTCCTATAGACGCG 57.135 50.000 3.53 3.53 0.00 6.01
111 112 2.048444 ACCAGTTCCTATAGACGCGA 57.952 50.000 15.93 0.00 0.00 5.87
112 113 1.948145 ACCAGTTCCTATAGACGCGAG 59.052 52.381 15.93 0.00 0.00 5.03
123 124 4.920662 ACGCGAGTGCAAATGTTG 57.079 50.000 15.93 0.00 46.97 3.33
124 125 2.021722 ACGCGAGTGCAAATGTTGT 58.978 47.368 15.93 0.00 46.97 3.32
125 126 0.380378 ACGCGAGTGCAAATGTTGTT 59.620 45.000 15.93 0.00 46.97 2.83
126 127 1.600013 ACGCGAGTGCAAATGTTGTTA 59.400 42.857 15.93 0.00 46.97 2.41
127 128 2.225491 ACGCGAGTGCAAATGTTGTTAT 59.775 40.909 15.93 0.00 46.97 1.89
128 129 2.589407 CGCGAGTGCAAATGTTGTTATG 59.411 45.455 0.00 0.00 42.97 1.90
129 130 3.666638 CGCGAGTGCAAATGTTGTTATGA 60.667 43.478 0.00 0.00 42.97 2.15
130 131 4.225984 GCGAGTGCAAATGTTGTTATGAA 58.774 39.130 0.00 0.00 42.15 2.57
131 132 4.679197 GCGAGTGCAAATGTTGTTATGAAA 59.321 37.500 0.00 0.00 42.15 2.69
132 133 5.174761 GCGAGTGCAAATGTTGTTATGAAAA 59.825 36.000 0.00 0.00 42.15 2.29
133 134 6.128849 GCGAGTGCAAATGTTGTTATGAAAAT 60.129 34.615 0.00 0.00 42.15 1.82
134 135 7.439490 CGAGTGCAAATGTTGTTATGAAAATC 58.561 34.615 0.00 0.00 0.00 2.17
135 136 7.410728 CGAGTGCAAATGTTGTTATGAAAATCC 60.411 37.037 0.00 0.00 0.00 3.01
136 137 7.444299 AGTGCAAATGTTGTTATGAAAATCCT 58.556 30.769 0.00 0.00 0.00 3.24
137 138 7.933033 AGTGCAAATGTTGTTATGAAAATCCTT 59.067 29.630 0.00 0.00 0.00 3.36
138 139 8.558700 GTGCAAATGTTGTTATGAAAATCCTTT 58.441 29.630 0.00 0.00 0.00 3.11
139 140 8.557864 TGCAAATGTTGTTATGAAAATCCTTTG 58.442 29.630 0.00 0.00 0.00 2.77
140 141 8.772705 GCAAATGTTGTTATGAAAATCCTTTGA 58.227 29.630 0.00 0.00 0.00 2.69
176 177 6.890268 ACCTTATGGAATTTGAAAGGGTAGAC 59.110 38.462 0.81 0.00 40.86 2.59
183 184 7.288852 TGGAATTTGAAAGGGTAGACAAATCAA 59.711 33.333 0.00 0.00 40.48 2.57
193 194 2.676748 AGACAAATCAAAACCTGGGCA 58.323 42.857 0.00 0.00 0.00 5.36
201 202 3.549794 TCAAAACCTGGGCAAAATTTGG 58.450 40.909 7.89 0.00 0.00 3.28
203 204 2.928801 AACCTGGGCAAAATTTGGTC 57.071 45.000 7.89 0.00 0.00 4.02
207 210 2.896685 CCTGGGCAAAATTTGGTCACTA 59.103 45.455 7.89 0.00 0.00 2.74
247 251 4.388577 AGGGGAGCACTTTGAATTAACT 57.611 40.909 0.00 0.00 0.00 2.24
250 254 6.311735 AGGGGAGCACTTTGAATTAACTAAA 58.688 36.000 0.00 0.00 0.00 1.85
253 257 8.745590 GGGGAGCACTTTGAATTAACTAAATTA 58.254 33.333 0.00 0.00 37.93 1.40
278 282 8.888579 AATAAGAGTATATATACAATGGCGGC 57.111 34.615 22.00 0.00 35.74 6.53
280 284 5.661458 AGAGTATATATACAATGGCGGCAC 58.339 41.667 22.00 0.00 35.74 5.01
314 321 4.504132 CCAGTAGTGGCTCGAAGC 57.496 61.111 2.97 0.00 41.46 3.86
315 322 1.591703 CCAGTAGTGGCTCGAAGCA 59.408 57.895 2.97 0.00 44.75 3.91
316 323 0.737715 CCAGTAGTGGCTCGAAGCAC 60.738 60.000 2.97 0.00 44.75 4.40
317 324 0.737715 CAGTAGTGGCTCGAAGCACC 60.738 60.000 8.71 0.00 44.75 5.01
318 325 1.805945 GTAGTGGCTCGAAGCACCG 60.806 63.158 8.71 0.00 44.75 4.94
319 326 2.273179 TAGTGGCTCGAAGCACCGT 61.273 57.895 8.71 0.00 44.75 4.83
320 327 1.812686 TAGTGGCTCGAAGCACCGTT 61.813 55.000 8.71 0.00 44.75 4.44
321 328 2.357034 TGGCTCGAAGCACCGTTC 60.357 61.111 8.71 0.00 44.75 3.95
322 329 2.357034 GGCTCGAAGCACCGTTCA 60.357 61.111 8.71 0.00 44.75 3.18
323 330 1.959226 GGCTCGAAGCACCGTTCAA 60.959 57.895 8.71 0.00 44.75 2.69
324 331 1.493311 GCTCGAAGCACCGTTCAAG 59.507 57.895 2.53 0.00 41.89 3.02
325 332 0.944311 GCTCGAAGCACCGTTCAAGA 60.944 55.000 2.53 0.00 41.89 3.02
326 333 1.714794 CTCGAAGCACCGTTCAAGAT 58.285 50.000 0.00 0.00 0.00 2.40
327 334 2.876091 CTCGAAGCACCGTTCAAGATA 58.124 47.619 0.00 0.00 0.00 1.98
328 335 3.448686 CTCGAAGCACCGTTCAAGATAT 58.551 45.455 0.00 0.00 0.00 1.63
329 336 3.444916 TCGAAGCACCGTTCAAGATATC 58.555 45.455 0.00 0.00 0.00 1.63
330 337 3.130516 TCGAAGCACCGTTCAAGATATCT 59.869 43.478 0.00 0.00 0.00 1.98
331 338 3.865745 CGAAGCACCGTTCAAGATATCTT 59.134 43.478 12.37 12.37 36.45 2.40
332 339 4.026475 CGAAGCACCGTTCAAGATATCTTC 60.026 45.833 15.24 3.95 33.11 2.87
333 340 3.798202 AGCACCGTTCAAGATATCTTCC 58.202 45.455 15.24 5.74 33.11 3.46
334 341 2.540101 GCACCGTTCAAGATATCTTCCG 59.460 50.000 15.24 15.89 33.11 4.30
335 342 3.737047 GCACCGTTCAAGATATCTTCCGA 60.737 47.826 15.24 8.09 33.11 4.55
336 343 4.621991 CACCGTTCAAGATATCTTCCGAT 58.378 43.478 15.24 2.63 33.11 4.18
337 344 5.769367 CACCGTTCAAGATATCTTCCGATA 58.231 41.667 15.24 0.65 36.61 2.92
338 345 6.390721 CACCGTTCAAGATATCTTCCGATAT 58.609 40.000 15.24 5.11 43.73 1.63
339 346 6.868864 CACCGTTCAAGATATCTTCCGATATT 59.131 38.462 15.24 0.00 41.70 1.28
340 347 7.062371 CACCGTTCAAGATATCTTCCGATATTC 59.938 40.741 15.24 2.71 41.70 1.75
341 348 6.531948 CCGTTCAAGATATCTTCCGATATTCC 59.468 42.308 15.24 0.00 41.70 3.01
342 349 6.251589 CGTTCAAGATATCTTCCGATATTCCG 59.748 42.308 15.24 0.82 41.70 4.30
343 350 7.313646 GTTCAAGATATCTTCCGATATTCCGA 58.686 38.462 15.24 3.18 41.70 4.55
344 351 7.646548 TCAAGATATCTTCCGATATTCCGAT 57.353 36.000 15.24 0.00 41.70 4.18
345 352 8.747538 TCAAGATATCTTCCGATATTCCGATA 57.252 34.615 15.24 0.00 41.70 2.92
346 353 9.185680 TCAAGATATCTTCCGATATTCCGATAA 57.814 33.333 15.24 0.00 41.70 1.75
347 354 9.803315 CAAGATATCTTCCGATATTCCGATAAA 57.197 33.333 15.24 0.00 41.70 1.40
350 357 9.119329 GATATCTTCCGATATTCCGATAAATCG 57.881 37.037 5.38 5.38 43.92 3.34
373 380 2.466846 CGATTTATCGCTTACCGTGGT 58.533 47.619 0.00 0.00 43.84 4.16
374 381 2.470257 CGATTTATCGCTTACCGTGGTC 59.530 50.000 0.00 0.00 43.84 4.02
375 382 3.714391 GATTTATCGCTTACCGTGGTCT 58.286 45.455 0.00 0.00 38.35 3.85
376 383 2.572191 TTATCGCTTACCGTGGTCTG 57.428 50.000 0.00 0.00 38.35 3.51
377 384 1.753930 TATCGCTTACCGTGGTCTGA 58.246 50.000 0.00 0.00 38.35 3.27
378 385 0.172803 ATCGCTTACCGTGGTCTGAC 59.827 55.000 0.00 0.00 38.35 3.51
379 386 1.445582 CGCTTACCGTGGTCTGACC 60.446 63.158 19.96 19.96 39.22 4.02
380 387 1.445582 GCTTACCGTGGTCTGACCG 60.446 63.158 21.15 10.50 42.58 4.79
381 388 1.870055 GCTTACCGTGGTCTGACCGA 61.870 60.000 21.15 8.42 42.58 4.69
382 389 0.815734 CTTACCGTGGTCTGACCGAT 59.184 55.000 21.15 9.33 42.58 4.18
383 390 2.019249 CTTACCGTGGTCTGACCGATA 58.981 52.381 21.15 8.40 42.58 2.92
384 391 2.127271 TACCGTGGTCTGACCGATAA 57.873 50.000 21.15 1.25 42.58 1.75
385 392 0.815734 ACCGTGGTCTGACCGATAAG 59.184 55.000 21.15 10.69 42.58 1.73
386 393 1.100510 CCGTGGTCTGACCGATAAGA 58.899 55.000 21.15 0.09 42.58 2.10
387 394 1.681793 CCGTGGTCTGACCGATAAGAT 59.318 52.381 21.15 0.00 42.58 2.40
388 395 2.882761 CCGTGGTCTGACCGATAAGATA 59.117 50.000 21.15 0.00 42.58 1.98
389 396 3.317149 CCGTGGTCTGACCGATAAGATAA 59.683 47.826 21.15 0.00 42.58 1.75
390 397 4.202080 CCGTGGTCTGACCGATAAGATAAA 60.202 45.833 21.15 0.00 42.58 1.40
391 398 4.738740 CGTGGTCTGACCGATAAGATAAAC 59.261 45.833 21.15 9.06 42.58 2.01
392 399 5.048507 GTGGTCTGACCGATAAGATAAACC 58.951 45.833 21.15 0.00 42.58 3.27
393 400 4.712829 TGGTCTGACCGATAAGATAAACCA 59.287 41.667 21.15 0.00 42.58 3.67
394 401 5.163447 TGGTCTGACCGATAAGATAAACCAG 60.163 44.000 21.15 0.00 42.58 4.00
395 402 4.745620 GTCTGACCGATAAGATAAACCAGC 59.254 45.833 0.00 0.00 0.00 4.85
396 403 4.058817 CTGACCGATAAGATAAACCAGCC 58.941 47.826 0.00 0.00 0.00 4.85
397 404 3.057734 GACCGATAAGATAAACCAGCCG 58.942 50.000 0.00 0.00 0.00 5.52
398 405 2.696707 ACCGATAAGATAAACCAGCCGA 59.303 45.455 0.00 0.00 0.00 5.54
399 406 3.323979 ACCGATAAGATAAACCAGCCGAT 59.676 43.478 0.00 0.00 0.00 4.18
400 407 4.525487 ACCGATAAGATAAACCAGCCGATA 59.475 41.667 0.00 0.00 0.00 2.92
401 408 5.011329 ACCGATAAGATAAACCAGCCGATAA 59.989 40.000 0.00 0.00 0.00 1.75
402 409 5.929992 CCGATAAGATAAACCAGCCGATAAA 59.070 40.000 0.00 0.00 0.00 1.40
403 410 6.594159 CCGATAAGATAAACCAGCCGATAAAT 59.406 38.462 0.00 0.00 0.00 1.40
404 411 7.201530 CCGATAAGATAAACCAGCCGATAAATC 60.202 40.741 0.00 0.00 0.00 2.17
405 412 7.330946 CGATAAGATAAACCAGCCGATAAATCA 59.669 37.037 0.00 0.00 0.00 2.57
406 413 6.867662 AAGATAAACCAGCCGATAAATCAG 57.132 37.500 0.00 0.00 0.00 2.90
407 414 5.930135 AGATAAACCAGCCGATAAATCAGT 58.070 37.500 0.00 0.00 0.00 3.41
408 415 5.992217 AGATAAACCAGCCGATAAATCAGTC 59.008 40.000 0.00 0.00 0.00 3.51
409 416 2.225068 ACCAGCCGATAAATCAGTCG 57.775 50.000 0.00 0.00 37.58 4.18
410 417 1.754803 ACCAGCCGATAAATCAGTCGA 59.245 47.619 0.00 0.00 40.11 4.20
411 418 2.365617 ACCAGCCGATAAATCAGTCGAT 59.634 45.455 0.00 0.00 40.11 3.59
412 419 3.572682 ACCAGCCGATAAATCAGTCGATA 59.427 43.478 0.00 0.00 40.11 2.92
413 420 4.220821 ACCAGCCGATAAATCAGTCGATAT 59.779 41.667 0.00 0.00 40.11 1.63
414 421 4.564372 CCAGCCGATAAATCAGTCGATATG 59.436 45.833 0.00 0.00 40.11 1.78
415 422 4.564372 CAGCCGATAAATCAGTCGATATGG 59.436 45.833 0.00 0.00 40.11 2.74
416 423 3.307242 GCCGATAAATCAGTCGATATGGC 59.693 47.826 0.00 0.00 40.11 4.40
417 424 3.547868 CCGATAAATCAGTCGATATGGCG 59.452 47.826 0.00 0.00 40.11 5.69
418 425 4.412207 CGATAAATCAGTCGATATGGCGA 58.588 43.478 0.00 0.00 40.11 5.54
419 426 5.037385 CGATAAATCAGTCGATATGGCGAT 58.963 41.667 0.00 0.00 42.82 4.58
420 427 6.199393 CGATAAATCAGTCGATATGGCGATA 58.801 40.000 0.00 0.00 42.82 2.92
421 428 6.691388 CGATAAATCAGTCGATATGGCGATAA 59.309 38.462 0.00 0.00 42.82 1.75
422 429 7.220108 CGATAAATCAGTCGATATGGCGATAAA 59.780 37.037 0.00 0.00 42.82 1.40
423 430 8.948631 ATAAATCAGTCGATATGGCGATAAAT 57.051 30.769 0.00 0.00 42.82 1.40
424 431 6.893958 AATCAGTCGATATGGCGATAAATC 57.106 37.500 0.00 0.00 42.82 2.17
435 442 2.998668 CGATAAATCGGCCGATATGC 57.001 50.000 39.08 25.69 45.93 3.14
444 451 2.094762 GGCCGATATGCCGATAAACT 57.905 50.000 0.00 0.00 42.54 2.66
445 452 1.732259 GGCCGATATGCCGATAAACTG 59.268 52.381 0.00 0.00 42.54 3.16
446 453 1.732259 GCCGATATGCCGATAAACTGG 59.268 52.381 0.00 0.00 0.00 4.00
451 458 4.456806 GCCGATAAACTGGCCGAT 57.543 55.556 0.00 0.00 45.73 4.18
452 459 2.702847 GCCGATAAACTGGCCGATT 58.297 52.632 0.00 0.00 45.73 3.34
453 460 1.021968 GCCGATAAACTGGCCGATTT 58.978 50.000 8.88 8.88 45.73 2.17
454 461 2.215196 GCCGATAAACTGGCCGATTTA 58.785 47.619 12.29 12.29 45.73 1.40
455 462 2.032290 GCCGATAAACTGGCCGATTTAC 60.032 50.000 12.18 7.04 45.73 2.01
456 463 2.546789 CCGATAAACTGGCCGATTTACC 59.453 50.000 12.18 3.60 0.00 2.85
457 464 2.546789 CGATAAACTGGCCGATTTACCC 59.453 50.000 12.18 7.63 0.00 3.69
458 465 2.423446 TAAACTGGCCGATTTACCCC 57.577 50.000 7.07 0.00 0.00 4.95
459 466 0.702316 AAACTGGCCGATTTACCCCT 59.298 50.000 0.00 0.00 0.00 4.79
460 467 0.702316 AACTGGCCGATTTACCCCTT 59.298 50.000 0.00 0.00 0.00 3.95
461 468 1.587066 ACTGGCCGATTTACCCCTTA 58.413 50.000 0.00 0.00 0.00 2.69
462 469 2.132686 ACTGGCCGATTTACCCCTTAT 58.867 47.619 0.00 0.00 0.00 1.73
463 470 2.105993 ACTGGCCGATTTACCCCTTATC 59.894 50.000 0.00 0.00 0.00 1.75
464 471 1.071071 TGGCCGATTTACCCCTTATCG 59.929 52.381 0.00 0.00 40.48 2.92
465 472 1.071228 GGCCGATTTACCCCTTATCGT 59.929 52.381 0.00 0.00 39.48 3.73
466 473 2.299867 GGCCGATTTACCCCTTATCGTA 59.700 50.000 0.00 0.00 39.48 3.43
467 474 3.582780 GCCGATTTACCCCTTATCGTAG 58.417 50.000 0.00 0.00 39.48 3.51
468 475 3.615834 GCCGATTTACCCCTTATCGTAGG 60.616 52.174 0.00 0.00 39.48 3.18
469 476 3.582780 CGATTTACCCCTTATCGTAGGC 58.417 50.000 0.00 0.00 37.11 3.93
470 477 3.615834 CGATTTACCCCTTATCGTAGGCC 60.616 52.174 0.00 0.00 37.11 5.19
471 478 1.331214 TTACCCCTTATCGTAGGCCG 58.669 55.000 0.00 0.00 33.73 6.13
479 486 4.557554 TCGTAGGCCGACCGATAA 57.442 55.556 10.71 0.00 41.60 1.75
480 487 2.324215 TCGTAGGCCGACCGATAAG 58.676 57.895 10.71 0.00 41.60 1.73
481 488 0.464373 TCGTAGGCCGACCGATAAGT 60.464 55.000 10.71 0.00 41.60 2.24
482 489 0.383231 CGTAGGCCGACCGATAAGTT 59.617 55.000 10.71 0.00 42.76 2.66
483 490 1.598924 CGTAGGCCGACCGATAAGTTC 60.599 57.143 10.71 0.00 42.76 3.01
484 491 1.035139 TAGGCCGACCGATAAGTTCC 58.965 55.000 0.00 0.00 42.76 3.62
485 492 1.227468 GGCCGACCGATAAGTTCCC 60.227 63.158 0.00 0.00 0.00 3.97
486 493 1.590792 GCCGACCGATAAGTTCCCG 60.591 63.158 0.00 0.00 0.00 5.14
487 494 2.008268 GCCGACCGATAAGTTCCCGA 62.008 60.000 0.00 0.00 0.00 5.14
488 495 0.672342 CCGACCGATAAGTTCCCGAT 59.328 55.000 0.00 0.00 0.00 4.18
489 496 1.881973 CCGACCGATAAGTTCCCGATA 59.118 52.381 0.00 0.00 0.00 2.92
490 497 2.294233 CCGACCGATAAGTTCCCGATAA 59.706 50.000 0.00 0.00 0.00 1.75
491 498 3.562505 CGACCGATAAGTTCCCGATAAG 58.437 50.000 0.00 0.00 0.00 1.73
492 499 3.315418 GACCGATAAGTTCCCGATAAGC 58.685 50.000 0.00 0.00 0.00 3.09
493 500 2.288030 ACCGATAAGTTCCCGATAAGCG 60.288 50.000 0.00 0.00 40.47 4.68
494 501 2.030540 CCGATAAGTTCCCGATAAGCGA 60.031 50.000 0.00 0.00 44.57 4.93
495 502 3.367087 CCGATAAGTTCCCGATAAGCGAT 60.367 47.826 0.00 0.00 44.57 4.58
496 503 4.142534 CCGATAAGTTCCCGATAAGCGATA 60.143 45.833 0.00 0.00 44.57 2.92
497 504 5.450137 CCGATAAGTTCCCGATAAGCGATAT 60.450 44.000 0.00 0.00 44.57 1.63
498 505 5.681982 CGATAAGTTCCCGATAAGCGATATC 59.318 44.000 0.00 0.00 44.57 1.63
499 506 3.870633 AGTTCCCGATAAGCGATATCC 57.129 47.619 0.00 0.00 44.57 2.59
500 507 2.496470 AGTTCCCGATAAGCGATATCCC 59.504 50.000 0.00 0.00 44.57 3.85
501 508 1.481871 TCCCGATAAGCGATATCCCC 58.518 55.000 0.00 0.00 44.57 4.81
502 509 1.191535 CCCGATAAGCGATATCCCCA 58.808 55.000 0.00 0.00 44.57 4.96
503 510 1.553248 CCCGATAAGCGATATCCCCAA 59.447 52.381 0.00 0.00 44.57 4.12
504 511 2.618053 CCGATAAGCGATATCCCCAAC 58.382 52.381 0.00 0.00 44.57 3.77
505 512 2.028476 CCGATAAGCGATATCCCCAACA 60.028 50.000 0.00 0.00 44.57 3.33
506 513 3.369471 CCGATAAGCGATATCCCCAACAT 60.369 47.826 0.00 0.00 44.57 2.71
507 514 4.253685 CGATAAGCGATATCCCCAACATT 58.746 43.478 0.00 0.00 44.57 2.71
508 515 4.093408 CGATAAGCGATATCCCCAACATTG 59.907 45.833 0.00 0.00 44.57 2.82
509 516 4.396166 GATAAGCGATATCCCCAACATTGG 59.604 45.833 3.47 3.47 38.35 3.16
510 517 7.110224 GATAAGCGATATCCCCAACATTGGC 62.110 48.000 5.03 0.00 37.84 4.52
537 544 8.277713 TCGAAGGAAATTTAAGTTCTTTGTACG 58.722 33.333 7.20 5.51 0.00 3.67
600 607 7.954788 AGTCTCTAACTGTGACAATTTCTTC 57.045 36.000 0.00 0.00 40.51 2.87
601 608 6.931840 AGTCTCTAACTGTGACAATTTCTTCC 59.068 38.462 0.00 0.00 40.51 3.46
602 609 6.147985 GTCTCTAACTGTGACAATTTCTTCCC 59.852 42.308 0.00 0.00 38.60 3.97
603 610 5.935945 TCTAACTGTGACAATTTCTTCCCA 58.064 37.500 0.00 0.00 0.00 4.37
604 611 4.918810 AACTGTGACAATTTCTTCCCAC 57.081 40.909 0.00 0.00 0.00 4.61
605 612 2.878406 ACTGTGACAATTTCTTCCCACG 59.122 45.455 0.00 0.00 0.00 4.94
606 613 1.606668 TGTGACAATTTCTTCCCACGC 59.393 47.619 0.00 0.00 0.00 5.34
607 614 1.606668 GTGACAATTTCTTCCCACGCA 59.393 47.619 0.00 0.00 0.00 5.24
608 615 2.034053 GTGACAATTTCTTCCCACGCAA 59.966 45.455 0.00 0.00 0.00 4.85
610 617 2.552315 GACAATTTCTTCCCACGCAAGA 59.448 45.455 0.00 0.00 43.62 3.02
611 618 2.955660 ACAATTTCTTCCCACGCAAGAA 59.044 40.909 0.00 0.00 37.96 2.52
635 642 6.720012 AAAAACTTTGACATTTTCTTGCGT 57.280 29.167 0.00 0.00 0.00 5.24
640 647 7.197071 ACTTTGACATTTTCTTGCGTGTATA 57.803 32.000 0.00 0.00 0.00 1.47
641 648 7.075741 ACTTTGACATTTTCTTGCGTGTATAC 58.924 34.615 0.00 0.00 0.00 1.47
642 649 6.546972 TTGACATTTTCTTGCGTGTATACA 57.453 33.333 0.08 0.08 0.00 2.29
683 690 7.437748 AGGAAATATCTGAAGTCGTAATCAGG 58.562 38.462 11.96 0.00 42.62 3.86
697 706 5.753438 TCGTAATCAGGCTAAAGCTATGTTG 59.247 40.000 1.39 0.00 41.70 3.33
713 725 6.823689 AGCTATGTTGGGTACACTCTTTATTG 59.176 38.462 0.00 0.00 40.19 1.90
824 857 1.066573 CATGAAACGAGCCTCTCACCT 60.067 52.381 0.00 0.00 0.00 4.00
970 1050 2.219325 CTCCACTCCACTCGTCTGCC 62.219 65.000 0.00 0.00 0.00 4.85
971 1051 2.279069 CCACTCCACTCGTCTGCCT 61.279 63.158 0.00 0.00 0.00 4.75
972 1052 1.080230 CACTCCACTCGTCTGCCTG 60.080 63.158 0.00 0.00 0.00 4.85
973 1053 2.125753 CTCCACTCGTCTGCCTGC 60.126 66.667 0.00 0.00 0.00 4.85
974 1054 2.917227 TCCACTCGTCTGCCTGCA 60.917 61.111 0.00 0.00 0.00 4.41
997 1097 2.218603 GAGGTACCAACAACACCAGTG 58.781 52.381 15.94 0.00 34.62 3.66
1353 1453 2.809010 GAGTACGAGCTCCTGGCC 59.191 66.667 8.47 0.00 43.05 5.36
1635 1735 3.376078 CTTGTTGGCATGGCGGCT 61.376 61.111 15.27 0.00 41.89 5.52
1767 1867 0.326618 CCCAGGACATCACCCTAGGT 60.327 60.000 8.29 0.00 35.62 3.08
1780 1880 1.064825 CCTAGGTGGGTTCAAGGTGT 58.935 55.000 0.00 0.00 0.00 4.16
1854 1954 2.629002 GTCCAAGGACGTGCATGTT 58.371 52.632 13.92 0.00 35.30 2.71
1900 2012 2.653702 GTGGACAGTCTGCTCGCT 59.346 61.111 0.00 0.00 0.00 4.93
1901 2013 1.445238 GTGGACAGTCTGCTCGCTC 60.445 63.158 0.00 0.00 0.00 5.03
2008 2120 0.322546 AGTGGCCTTTTGACCGATCC 60.323 55.000 3.32 0.00 0.00 3.36
2016 2128 2.852495 TTTGACCGATCCTCGCCAGC 62.852 60.000 0.00 0.00 38.82 4.85
2094 2215 1.074319 TCGCACGCTCGTGGTAATTC 61.074 55.000 21.72 5.22 45.49 2.17
2138 2262 7.887996 TTTGAATTAAGCCATGTGATGTTTC 57.112 32.000 0.00 0.00 0.00 2.78
2150 2274 7.257722 CCATGTGATGTTTCTACCCAATAAAC 58.742 38.462 0.00 0.00 34.45 2.01
2204 2330 1.608590 ACACCTTGTATGTGCAAGTGC 59.391 47.619 9.45 0.00 43.03 4.40
2322 2450 2.825532 GCTTCAATTAAAGGAGCCCACA 59.174 45.455 1.09 0.00 0.00 4.17
2372 2500 1.076677 TCTCTACCTCCCGTTGGAACT 59.923 52.381 0.00 0.00 41.17 3.01
2466 2626 4.993029 TTTGTTAGGGTTTGTGTTCTGG 57.007 40.909 0.00 0.00 0.00 3.86
2513 2687 1.913419 TGAAATAAGGTTCTCCCCGCT 59.087 47.619 0.00 0.00 0.00 5.52
2615 2819 5.388475 CGTTTACATTCGTTTGTCCTCAGAG 60.388 44.000 0.00 0.00 0.00 3.35
2622 2826 4.079970 TCGTTTGTCCTCAGAGTGTATCT 58.920 43.478 0.00 0.00 39.56 1.98
2753 2959 2.002977 TCCAGCAAGGGAGGGATGG 61.003 63.158 0.00 0.00 41.83 3.51
2789 2995 0.944386 TCAGCTTGTTTCGGTGCTTC 59.056 50.000 0.00 0.00 33.03 3.86
2820 3026 4.430908 GTTAGGTGGTCTACGGATTTGAG 58.569 47.826 0.00 0.00 0.00 3.02
2826 3032 4.624452 GTGGTCTACGGATTTGAGTGTAAC 59.376 45.833 0.00 0.00 0.00 2.50
2933 3141 1.148310 CACCACGTGTAAAGAGGCTG 58.852 55.000 15.65 0.00 27.44 4.85
2954 3162 3.072768 TGGTTTGGTTAATACTGGACCGT 59.927 43.478 0.00 0.00 36.22 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.067821 TGCGGGCGAAGAACAATTTTT 59.932 42.857 0.00 0.00 0.00 1.94
9 10 0.671251 TGCGGGCGAAGAACAATTTT 59.329 45.000 0.00 0.00 0.00 1.82
10 11 0.240945 CTGCGGGCGAAGAACAATTT 59.759 50.000 0.00 0.00 0.00 1.82
11 12 0.605319 TCTGCGGGCGAAGAACAATT 60.605 50.000 0.00 0.00 0.00 2.32
12 13 0.392998 ATCTGCGGGCGAAGAACAAT 60.393 50.000 0.00 0.00 32.78 2.71
13 14 0.248012 TATCTGCGGGCGAAGAACAA 59.752 50.000 0.00 0.00 32.78 2.83
14 15 0.248012 TTATCTGCGGGCGAAGAACA 59.752 50.000 0.00 0.00 32.78 3.18
15 16 1.261619 CATTATCTGCGGGCGAAGAAC 59.738 52.381 0.00 0.00 32.78 3.01
16 17 1.138069 TCATTATCTGCGGGCGAAGAA 59.862 47.619 0.00 0.00 32.78 2.52
17 18 0.750249 TCATTATCTGCGGGCGAAGA 59.250 50.000 0.00 0.00 33.72 2.87
18 19 1.528586 CTTCATTATCTGCGGGCGAAG 59.471 52.381 0.00 0.00 0.00 3.79
19 20 1.581934 CTTCATTATCTGCGGGCGAA 58.418 50.000 0.00 0.00 0.00 4.70
20 21 0.249868 CCTTCATTATCTGCGGGCGA 60.250 55.000 0.00 0.00 0.00 5.54
21 22 0.249868 TCCTTCATTATCTGCGGGCG 60.250 55.000 0.00 0.00 0.00 6.13
22 23 2.191128 ATCCTTCATTATCTGCGGGC 57.809 50.000 0.00 0.00 0.00 6.13
23 24 4.637534 CCAATATCCTTCATTATCTGCGGG 59.362 45.833 0.00 0.00 0.00 6.13
24 25 5.491070 TCCAATATCCTTCATTATCTGCGG 58.509 41.667 0.00 0.00 0.00 5.69
25 26 7.621428 ATTCCAATATCCTTCATTATCTGCG 57.379 36.000 0.00 0.00 0.00 5.18
26 27 8.465201 GGAATTCCAATATCCTTCATTATCTGC 58.535 37.037 20.04 0.00 35.64 4.26
27 28 8.964772 GGGAATTCCAATATCCTTCATTATCTG 58.035 37.037 25.67 0.00 37.91 2.90
28 29 7.831193 CGGGAATTCCAATATCCTTCATTATCT 59.169 37.037 25.67 0.00 37.91 1.98
29 30 7.829211 TCGGGAATTCCAATATCCTTCATTATC 59.171 37.037 25.67 1.43 37.91 1.75
30 31 7.698912 TCGGGAATTCCAATATCCTTCATTAT 58.301 34.615 25.67 0.00 37.91 1.28
31 32 7.085476 TCGGGAATTCCAATATCCTTCATTA 57.915 36.000 25.67 0.00 37.91 1.90
32 33 5.952387 TCGGGAATTCCAATATCCTTCATT 58.048 37.500 25.67 0.00 37.91 2.57
33 34 5.582950 TCGGGAATTCCAATATCCTTCAT 57.417 39.130 25.67 0.00 37.91 2.57
34 35 5.381184 TTCGGGAATTCCAATATCCTTCA 57.619 39.130 25.67 0.00 37.91 3.02
35 36 6.901081 AATTCGGGAATTCCAATATCCTTC 57.099 37.500 25.67 4.30 36.34 3.46
36 37 6.901081 GAATTCGGGAATTCCAATATCCTT 57.099 37.500 25.67 9.24 46.68 3.36
47 48 3.380471 TCCCATGTGAATTCGGGAATT 57.620 42.857 14.48 6.36 44.87 2.17
51 52 2.057137 ACATCCCATGTGAATTCGGG 57.943 50.000 9.30 9.30 43.01 5.14
60 61 1.305213 GGCAACCCACATCCCATGT 60.305 57.895 0.00 0.00 46.22 3.21
61 62 1.305129 TGGCAACCCACATCCCATG 60.305 57.895 0.00 0.00 35.79 3.66
62 63 3.189336 TGGCAACCCACATCCCAT 58.811 55.556 0.00 0.00 35.79 4.00
80 81 1.546998 GGAACTGGTTAACCCCTGTGG 60.547 57.143 21.97 7.55 36.84 4.17
81 82 1.423921 AGGAACTGGTTAACCCCTGTG 59.576 52.381 21.97 9.20 37.18 3.66
82 83 1.829138 AGGAACTGGTTAACCCCTGT 58.171 50.000 21.97 14.46 37.18 4.00
83 84 4.966805 TCTATAGGAACTGGTTAACCCCTG 59.033 45.833 23.31 15.77 41.52 4.45
84 85 4.967442 GTCTATAGGAACTGGTTAACCCCT 59.033 45.833 21.97 20.88 41.52 4.79
85 86 4.202192 CGTCTATAGGAACTGGTTAACCCC 60.202 50.000 21.97 15.03 41.52 4.95
86 87 4.738839 GCGTCTATAGGAACTGGTTAACCC 60.739 50.000 21.97 6.14 41.52 4.11
87 88 4.366586 GCGTCTATAGGAACTGGTTAACC 58.633 47.826 18.27 18.27 41.52 2.85
88 89 4.040376 CGCGTCTATAGGAACTGGTTAAC 58.960 47.826 0.00 0.00 41.52 2.01
89 90 3.947196 TCGCGTCTATAGGAACTGGTTAA 59.053 43.478 5.77 0.00 41.52 2.01
90 91 3.544684 TCGCGTCTATAGGAACTGGTTA 58.455 45.455 5.77 0.00 41.52 2.85
91 92 2.358267 CTCGCGTCTATAGGAACTGGTT 59.642 50.000 5.77 0.00 41.52 3.67
92 93 1.948145 CTCGCGTCTATAGGAACTGGT 59.052 52.381 5.77 0.00 41.52 4.00
93 94 1.948145 ACTCGCGTCTATAGGAACTGG 59.052 52.381 5.77 0.00 41.52 4.00
94 95 2.855187 GCACTCGCGTCTATAGGAACTG 60.855 54.545 5.77 0.00 41.52 3.16
95 96 1.334243 GCACTCGCGTCTATAGGAACT 59.666 52.381 5.77 0.00 46.37 3.01
96 97 1.065102 TGCACTCGCGTCTATAGGAAC 59.935 52.381 5.77 0.00 42.97 3.62
97 98 1.385528 TGCACTCGCGTCTATAGGAA 58.614 50.000 5.77 0.00 42.97 3.36
98 99 1.385528 TTGCACTCGCGTCTATAGGA 58.614 50.000 5.77 0.00 42.97 2.94
99 100 2.203800 TTTGCACTCGCGTCTATAGG 57.796 50.000 5.77 0.00 42.97 2.57
100 101 3.116300 ACATTTGCACTCGCGTCTATAG 58.884 45.455 5.77 0.00 42.97 1.31
101 102 3.159353 ACATTTGCACTCGCGTCTATA 57.841 42.857 5.77 0.00 42.97 1.31
102 103 2.010145 ACATTTGCACTCGCGTCTAT 57.990 45.000 5.77 0.00 42.97 1.98
103 104 1.459209 CAACATTTGCACTCGCGTCTA 59.541 47.619 5.77 0.00 42.97 2.59
104 105 0.235665 CAACATTTGCACTCGCGTCT 59.764 50.000 5.77 0.00 42.97 4.18
105 106 0.041312 ACAACATTTGCACTCGCGTC 60.041 50.000 5.77 0.00 42.97 5.19
106 107 0.380378 AACAACATTTGCACTCGCGT 59.620 45.000 5.77 0.00 42.97 6.01
107 108 2.308347 TAACAACATTTGCACTCGCG 57.692 45.000 0.00 0.00 42.97 5.87
108 109 3.820689 TCATAACAACATTTGCACTCGC 58.179 40.909 0.00 0.00 39.24 5.03
109 110 6.746104 TTTTCATAACAACATTTGCACTCG 57.254 33.333 0.00 0.00 0.00 4.18
110 111 7.599998 AGGATTTTCATAACAACATTTGCACTC 59.400 33.333 0.00 0.00 0.00 3.51
111 112 7.444299 AGGATTTTCATAACAACATTTGCACT 58.556 30.769 0.00 0.00 0.00 4.40
112 113 7.656707 AGGATTTTCATAACAACATTTGCAC 57.343 32.000 0.00 0.00 0.00 4.57
113 114 8.557864 CAAAGGATTTTCATAACAACATTTGCA 58.442 29.630 0.00 0.00 35.03 4.08
114 115 8.772705 TCAAAGGATTTTCATAACAACATTTGC 58.227 29.630 0.00 0.00 35.03 3.68
146 147 9.951866 ACCCTTTCAAATTCCATAAGGTATATT 57.048 29.630 0.00 0.00 34.82 1.28
149 150 8.787818 TCTACCCTTTCAAATTCCATAAGGTAT 58.212 33.333 0.00 0.00 34.82 2.73
150 151 8.050930 GTCTACCCTTTCAAATTCCATAAGGTA 58.949 37.037 0.00 0.00 34.82 3.08
151 152 6.890268 GTCTACCCTTTCAAATTCCATAAGGT 59.110 38.462 0.00 0.00 34.82 3.50
152 153 6.889722 TGTCTACCCTTTCAAATTCCATAAGG 59.110 38.462 0.00 0.00 36.07 2.69
153 154 7.938140 TGTCTACCCTTTCAAATTCCATAAG 57.062 36.000 0.00 0.00 0.00 1.73
154 155 8.713708 TTTGTCTACCCTTTCAAATTCCATAA 57.286 30.769 0.00 0.00 0.00 1.90
155 156 8.893563 ATTTGTCTACCCTTTCAAATTCCATA 57.106 30.769 0.00 0.00 37.25 2.74
156 157 7.454380 TGATTTGTCTACCCTTTCAAATTCCAT 59.546 33.333 0.00 0.00 39.52 3.41
157 158 6.780031 TGATTTGTCTACCCTTTCAAATTCCA 59.220 34.615 0.00 0.00 39.52 3.53
158 159 7.227049 TGATTTGTCTACCCTTTCAAATTCC 57.773 36.000 0.00 0.00 39.52 3.01
159 160 9.541143 TTTTGATTTGTCTACCCTTTCAAATTC 57.459 29.630 0.00 0.00 39.52 2.17
160 161 9.325198 GTTTTGATTTGTCTACCCTTTCAAATT 57.675 29.630 0.00 0.00 39.52 1.82
170 171 3.056821 GCCCAGGTTTTGATTTGTCTACC 60.057 47.826 0.00 0.00 0.00 3.18
176 177 5.771153 AATTTTGCCCAGGTTTTGATTTG 57.229 34.783 0.00 0.00 0.00 2.32
183 184 2.507471 TGACCAAATTTTGCCCAGGTTT 59.493 40.909 3.50 0.00 0.00 3.27
201 202 6.980051 AAAAATCTCGGTTATGGTAGTGAC 57.020 37.500 0.00 0.00 0.00 3.67
226 229 4.388577 AGTTAATTCAAAGTGCTCCCCT 57.611 40.909 0.00 0.00 0.00 4.79
227 230 6.584185 TTTAGTTAATTCAAAGTGCTCCCC 57.416 37.500 0.00 0.00 0.00 4.81
253 257 8.482943 TGCCGCCATTGTATATATACTCTTATT 58.517 33.333 20.80 0.00 34.41 1.40
257 261 5.186992 TGTGCCGCCATTGTATATATACTCT 59.813 40.000 20.80 7.87 34.41 3.24
267 271 3.067461 GGATATTTTGTGCCGCCATTGTA 59.933 43.478 0.00 0.00 0.00 2.41
270 274 1.412343 GGGATATTTTGTGCCGCCATT 59.588 47.619 0.00 0.00 0.00 3.16
275 279 0.248458 GCGTGGGATATTTTGTGCCG 60.248 55.000 0.00 0.00 0.00 5.69
278 282 2.230025 TGGTTGCGTGGGATATTTTGTG 59.770 45.455 0.00 0.00 0.00 3.33
280 284 2.491693 ACTGGTTGCGTGGGATATTTTG 59.508 45.455 0.00 0.00 0.00 2.44
310 317 4.271291 GGAAGATATCTTGAACGGTGCTTC 59.729 45.833 22.61 3.59 36.11 3.86
311 318 4.192317 GGAAGATATCTTGAACGGTGCTT 58.808 43.478 22.61 0.00 36.11 3.91
312 319 3.738281 CGGAAGATATCTTGAACGGTGCT 60.738 47.826 22.61 0.00 36.11 4.40
313 320 2.540101 CGGAAGATATCTTGAACGGTGC 59.460 50.000 22.61 5.44 36.11 5.01
314 321 4.041740 TCGGAAGATATCTTGAACGGTG 57.958 45.455 22.61 4.64 36.11 4.94
354 361 3.489785 CAGACCACGGTAAGCGATAAATC 59.510 47.826 0.00 0.00 0.00 2.17
355 362 3.131577 TCAGACCACGGTAAGCGATAAAT 59.868 43.478 0.00 0.00 0.00 1.40
356 363 2.492881 TCAGACCACGGTAAGCGATAAA 59.507 45.455 0.00 0.00 0.00 1.40
357 364 2.093890 TCAGACCACGGTAAGCGATAA 58.906 47.619 0.00 0.00 0.00 1.75
358 365 1.402968 GTCAGACCACGGTAAGCGATA 59.597 52.381 0.00 0.00 0.00 2.92
359 366 0.172803 GTCAGACCACGGTAAGCGAT 59.827 55.000 0.00 0.00 0.00 4.58
360 367 1.582968 GTCAGACCACGGTAAGCGA 59.417 57.895 0.00 0.00 0.00 4.93
361 368 1.445582 GGTCAGACCACGGTAAGCG 60.446 63.158 15.43 0.00 38.42 4.68
362 369 1.445582 CGGTCAGACCACGGTAAGC 60.446 63.158 20.13 0.00 38.47 3.09
363 370 0.815734 ATCGGTCAGACCACGGTAAG 59.184 55.000 20.13 1.23 38.47 2.34
364 371 2.127271 TATCGGTCAGACCACGGTAA 57.873 50.000 20.13 0.00 38.47 2.85
365 372 2.019249 CTTATCGGTCAGACCACGGTA 58.981 52.381 20.13 4.32 38.47 4.02
366 373 0.815734 CTTATCGGTCAGACCACGGT 59.184 55.000 20.13 5.34 38.47 4.83
367 374 1.100510 TCTTATCGGTCAGACCACGG 58.899 55.000 20.13 3.49 38.47 4.94
368 375 4.563337 TTATCTTATCGGTCAGACCACG 57.437 45.455 20.13 6.64 38.47 4.94
369 376 5.048507 GGTTTATCTTATCGGTCAGACCAC 58.951 45.833 20.13 5.69 38.47 4.16
370 377 4.712829 TGGTTTATCTTATCGGTCAGACCA 59.287 41.667 20.13 7.26 38.47 4.02
371 378 5.272283 TGGTTTATCTTATCGGTCAGACC 57.728 43.478 9.92 9.92 34.05 3.85
372 379 4.745620 GCTGGTTTATCTTATCGGTCAGAC 59.254 45.833 0.00 0.00 0.00 3.51
373 380 4.202223 GGCTGGTTTATCTTATCGGTCAGA 60.202 45.833 0.00 0.00 0.00 3.27
374 381 4.058817 GGCTGGTTTATCTTATCGGTCAG 58.941 47.826 0.00 0.00 0.00 3.51
375 382 3.491964 CGGCTGGTTTATCTTATCGGTCA 60.492 47.826 0.00 0.00 0.00 4.02
376 383 3.057734 CGGCTGGTTTATCTTATCGGTC 58.942 50.000 0.00 0.00 0.00 4.79
377 384 2.696707 TCGGCTGGTTTATCTTATCGGT 59.303 45.455 0.00 0.00 0.00 4.69
378 385 3.380479 TCGGCTGGTTTATCTTATCGG 57.620 47.619 0.00 0.00 0.00 4.18
379 386 7.330946 TGATTTATCGGCTGGTTTATCTTATCG 59.669 37.037 0.00 0.00 0.00 2.92
380 387 8.547967 TGATTTATCGGCTGGTTTATCTTATC 57.452 34.615 0.00 0.00 0.00 1.75
381 388 8.157476 ACTGATTTATCGGCTGGTTTATCTTAT 58.843 33.333 0.00 0.00 36.64 1.73
382 389 7.506114 ACTGATTTATCGGCTGGTTTATCTTA 58.494 34.615 0.00 0.00 36.64 2.10
383 390 6.357367 ACTGATTTATCGGCTGGTTTATCTT 58.643 36.000 0.00 0.00 36.64 2.40
384 391 5.930135 ACTGATTTATCGGCTGGTTTATCT 58.070 37.500 0.00 0.00 36.64 1.98
385 392 5.107453 CGACTGATTTATCGGCTGGTTTATC 60.107 44.000 0.00 0.00 36.64 1.75
386 393 4.750098 CGACTGATTTATCGGCTGGTTTAT 59.250 41.667 0.00 0.00 36.64 1.40
387 394 4.116961 CGACTGATTTATCGGCTGGTTTA 58.883 43.478 0.00 0.00 36.64 2.01
388 395 2.936498 CGACTGATTTATCGGCTGGTTT 59.064 45.455 0.00 0.00 36.64 3.27
389 396 2.167693 TCGACTGATTTATCGGCTGGTT 59.832 45.455 0.00 0.00 38.86 3.67
390 397 1.754803 TCGACTGATTTATCGGCTGGT 59.245 47.619 0.00 0.00 38.86 4.00
391 398 2.509052 TCGACTGATTTATCGGCTGG 57.491 50.000 0.00 0.00 38.86 4.85
392 399 4.564372 CCATATCGACTGATTTATCGGCTG 59.436 45.833 0.00 0.00 38.86 4.85
393 400 4.748892 CCATATCGACTGATTTATCGGCT 58.251 43.478 0.00 0.00 38.86 5.52
394 401 3.307242 GCCATATCGACTGATTTATCGGC 59.693 47.826 0.00 0.00 38.86 5.54
395 402 3.547868 CGCCATATCGACTGATTTATCGG 59.452 47.826 0.00 0.00 38.86 4.18
396 403 4.412207 TCGCCATATCGACTGATTTATCG 58.588 43.478 0.00 0.00 39.72 2.92
397 404 7.987268 TTATCGCCATATCGACTGATTTATC 57.013 36.000 0.00 0.00 41.62 1.75
398 405 8.948631 ATTTATCGCCATATCGACTGATTTAT 57.051 30.769 0.00 0.00 41.62 1.40
399 406 7.220108 CGATTTATCGCCATATCGACTGATTTA 59.780 37.037 0.00 0.00 43.84 1.40
400 407 6.035005 CGATTTATCGCCATATCGACTGATTT 59.965 38.462 0.00 0.00 43.84 2.17
401 408 5.516696 CGATTTATCGCCATATCGACTGATT 59.483 40.000 0.00 0.00 43.84 2.57
402 409 5.037385 CGATTTATCGCCATATCGACTGAT 58.963 41.667 0.00 0.00 43.84 2.90
403 410 4.412207 CGATTTATCGCCATATCGACTGA 58.588 43.478 0.00 0.00 43.84 3.41
404 411 4.745170 CGATTTATCGCCATATCGACTG 57.255 45.455 0.00 0.00 43.84 3.51
416 423 1.593006 GGCATATCGGCCGATTTATCG 59.407 52.381 42.74 26.30 45.40 2.92
426 433 1.732259 CCAGTTTATCGGCATATCGGC 59.268 52.381 0.00 0.00 0.00 5.54
435 442 2.546789 GGTAAATCGGCCAGTTTATCGG 59.453 50.000 2.24 0.00 0.00 4.18
436 443 2.546789 GGGTAAATCGGCCAGTTTATCG 59.453 50.000 2.24 0.00 0.00 2.92
437 444 2.882761 GGGGTAAATCGGCCAGTTTATC 59.117 50.000 2.24 7.54 0.00 1.75
438 445 2.512476 AGGGGTAAATCGGCCAGTTTAT 59.488 45.455 2.24 0.00 0.00 1.40
439 446 1.917568 AGGGGTAAATCGGCCAGTTTA 59.082 47.619 2.24 4.40 0.00 2.01
440 447 0.702316 AGGGGTAAATCGGCCAGTTT 59.298 50.000 2.24 5.51 0.00 2.66
441 448 0.702316 AAGGGGTAAATCGGCCAGTT 59.298 50.000 2.24 0.00 0.00 3.16
442 449 1.587066 TAAGGGGTAAATCGGCCAGT 58.413 50.000 2.24 0.00 0.00 4.00
443 450 2.779506 GATAAGGGGTAAATCGGCCAG 58.220 52.381 2.24 0.00 0.00 4.85
444 451 1.071071 CGATAAGGGGTAAATCGGCCA 59.929 52.381 2.24 0.00 39.00 5.36
445 452 1.071228 ACGATAAGGGGTAAATCGGCC 59.929 52.381 8.58 0.00 45.13 6.13
446 453 2.538512 ACGATAAGGGGTAAATCGGC 57.461 50.000 8.58 0.00 45.13 5.54
447 454 3.615834 GCCTACGATAAGGGGTAAATCGG 60.616 52.174 8.58 0.00 45.13 4.18
448 455 3.582780 GCCTACGATAAGGGGTAAATCG 58.417 50.000 2.66 2.66 46.02 3.34
449 456 3.935315 GGCCTACGATAAGGGGTAAATC 58.065 50.000 0.00 0.00 37.11 2.17
463 470 0.383231 AACTTATCGGTCGGCCTACG 59.617 55.000 3.66 2.24 46.11 3.51
464 471 1.269465 GGAACTTATCGGTCGGCCTAC 60.269 57.143 3.66 0.00 0.00 3.18
465 472 1.035139 GGAACTTATCGGTCGGCCTA 58.965 55.000 3.66 0.00 0.00 3.93
466 473 1.683418 GGGAACTTATCGGTCGGCCT 61.683 60.000 3.66 0.00 0.00 5.19
467 474 1.227468 GGGAACTTATCGGTCGGCC 60.227 63.158 0.00 0.00 0.00 6.13
468 475 1.590792 CGGGAACTTATCGGTCGGC 60.591 63.158 0.00 0.00 0.00 5.54
469 476 0.672342 ATCGGGAACTTATCGGTCGG 59.328 55.000 0.00 0.00 0.00 4.79
470 477 3.562505 CTTATCGGGAACTTATCGGTCG 58.437 50.000 0.00 0.00 0.00 4.79
471 478 3.315418 GCTTATCGGGAACTTATCGGTC 58.685 50.000 0.00 0.00 0.00 4.79
472 479 2.288030 CGCTTATCGGGAACTTATCGGT 60.288 50.000 0.00 0.00 33.78 4.69
473 480 2.030540 TCGCTTATCGGGAACTTATCGG 60.031 50.000 0.00 0.00 39.05 4.18
474 481 3.278367 TCGCTTATCGGGAACTTATCG 57.722 47.619 0.00 0.00 39.05 2.92
475 482 5.978322 GGATATCGCTTATCGGGAACTTATC 59.022 44.000 0.00 0.00 38.08 1.75
476 483 5.163437 GGGATATCGCTTATCGGGAACTTAT 60.163 44.000 12.31 0.00 38.08 1.73
477 484 4.159135 GGGATATCGCTTATCGGGAACTTA 59.841 45.833 12.31 0.00 38.08 2.24
478 485 3.056035 GGGATATCGCTTATCGGGAACTT 60.056 47.826 12.31 0.00 38.08 2.66
479 486 2.496470 GGGATATCGCTTATCGGGAACT 59.504 50.000 12.31 0.00 38.08 3.01
480 487 2.418334 GGGGATATCGCTTATCGGGAAC 60.418 54.545 18.21 0.00 38.08 3.62
481 488 1.829222 GGGGATATCGCTTATCGGGAA 59.171 52.381 18.21 0.00 38.08 3.97
482 489 1.272816 TGGGGATATCGCTTATCGGGA 60.273 52.381 18.21 0.00 38.08 5.14
483 490 1.191535 TGGGGATATCGCTTATCGGG 58.808 55.000 18.21 0.00 38.08 5.14
484 491 2.028476 TGTTGGGGATATCGCTTATCGG 60.028 50.000 18.21 0.00 38.08 4.18
485 492 3.313012 TGTTGGGGATATCGCTTATCG 57.687 47.619 18.21 0.00 38.08 2.92
486 493 4.396166 CCAATGTTGGGGATATCGCTTATC 59.604 45.833 18.21 8.56 44.70 1.75
487 494 4.335416 CCAATGTTGGGGATATCGCTTAT 58.665 43.478 18.21 6.34 44.70 1.73
488 495 3.750371 CCAATGTTGGGGATATCGCTTA 58.250 45.455 18.21 6.48 44.70 3.09
489 496 2.586425 CCAATGTTGGGGATATCGCTT 58.414 47.619 18.21 2.96 44.70 4.68
490 497 2.276732 CCAATGTTGGGGATATCGCT 57.723 50.000 18.21 0.00 44.70 4.93
501 508 3.855689 ATTTCCTTCGAGCCAATGTTG 57.144 42.857 0.00 0.00 0.00 3.33
502 509 4.871933 AAATTTCCTTCGAGCCAATGTT 57.128 36.364 0.00 0.00 0.00 2.71
503 510 5.476945 ACTTAAATTTCCTTCGAGCCAATGT 59.523 36.000 0.00 0.00 0.00 2.71
504 511 5.954335 ACTTAAATTTCCTTCGAGCCAATG 58.046 37.500 0.00 0.00 0.00 2.82
505 512 6.434340 AGAACTTAAATTTCCTTCGAGCCAAT 59.566 34.615 0.00 0.00 0.00 3.16
506 513 5.768164 AGAACTTAAATTTCCTTCGAGCCAA 59.232 36.000 0.00 0.00 0.00 4.52
507 514 5.313712 AGAACTTAAATTTCCTTCGAGCCA 58.686 37.500 0.00 0.00 0.00 4.75
508 515 5.881777 AGAACTTAAATTTCCTTCGAGCC 57.118 39.130 0.00 0.00 0.00 4.70
509 516 7.139392 ACAAAGAACTTAAATTTCCTTCGAGC 58.861 34.615 0.00 0.00 0.00 5.03
510 517 9.595357 GTACAAAGAACTTAAATTTCCTTCGAG 57.405 33.333 0.00 0.00 0.00 4.04
511 518 8.277713 CGTACAAAGAACTTAAATTTCCTTCGA 58.722 33.333 0.00 0.00 0.00 3.71
512 519 7.532884 CCGTACAAAGAACTTAAATTTCCTTCG 59.467 37.037 0.00 0.00 0.00 3.79
513 520 8.562052 TCCGTACAAAGAACTTAAATTTCCTTC 58.438 33.333 0.00 0.00 0.00 3.46
581 588 5.334105 CGTGGGAAGAAATTGTCACAGTTAG 60.334 44.000 0.00 0.00 0.00 2.34
593 600 4.664150 TTTTTCTTGCGTGGGAAGAAAT 57.336 36.364 20.52 0.00 44.76 2.17
612 619 6.147000 ACACGCAAGAAAATGTCAAAGTTTTT 59.853 30.769 0.00 0.00 43.62 1.94
613 620 5.637387 ACACGCAAGAAAATGTCAAAGTTTT 59.363 32.000 0.00 0.00 43.62 2.43
614 621 5.167845 ACACGCAAGAAAATGTCAAAGTTT 58.832 33.333 0.00 0.00 43.62 2.66
615 622 4.743493 ACACGCAAGAAAATGTCAAAGTT 58.257 34.783 0.00 0.00 43.62 2.66
616 623 4.370364 ACACGCAAGAAAATGTCAAAGT 57.630 36.364 0.00 0.00 43.62 2.66
617 624 7.075121 TGTATACACGCAAGAAAATGTCAAAG 58.925 34.615 0.08 0.00 43.62 2.77
618 625 6.960468 TGTATACACGCAAGAAAATGTCAAA 58.040 32.000 0.08 0.00 43.62 2.69
619 626 6.546972 TGTATACACGCAAGAAAATGTCAA 57.453 33.333 0.08 0.00 43.62 3.18
620 627 6.735678 ATGTATACACGCAAGAAAATGTCA 57.264 33.333 7.96 0.00 43.62 3.58
621 628 7.223971 TCCTATGTATACACGCAAGAAAATGTC 59.776 37.037 7.96 0.00 43.62 3.06
622 629 7.045416 TCCTATGTATACACGCAAGAAAATGT 58.955 34.615 7.96 0.00 43.62 2.71
623 630 7.477144 TCCTATGTATACACGCAAGAAAATG 57.523 36.000 7.96 0.00 43.62 2.32
624 631 6.202954 GCTCCTATGTATACACGCAAGAAAAT 59.797 38.462 7.96 0.00 43.62 1.82
663 670 7.526142 TTAGCCTGATTACGACTTCAGATAT 57.474 36.000 12.55 0.00 41.53 1.63
666 673 5.651530 CTTTAGCCTGATTACGACTTCAGA 58.348 41.667 12.55 0.00 41.53 3.27
669 676 4.434520 AGCTTTAGCCTGATTACGACTTC 58.565 43.478 0.00 0.00 43.38 3.01
676 683 5.104109 ACCCAACATAGCTTTAGCCTGATTA 60.104 40.000 0.00 0.00 43.38 1.75
683 690 4.514401 AGTGTACCCAACATAGCTTTAGC 58.486 43.478 0.00 0.00 41.10 3.09
697 706 4.933400 TCGCTTTCAATAAAGAGTGTACCC 59.067 41.667 2.15 0.00 44.14 3.69
713 725 6.520447 GTCTGTATGTAGATACGATCGCTTTC 59.480 42.308 16.60 9.64 37.82 2.62
866 923 1.829222 CGGGTGGAGCTAGAAAAGGTA 59.171 52.381 0.00 0.00 35.60 3.08
945 1025 0.609406 CGAGTGGAGTGGAGAGTGGA 60.609 60.000 0.00 0.00 0.00 4.02
970 1050 1.873591 GTTGTTGGTACCTCAGTGCAG 59.126 52.381 14.36 0.00 0.00 4.41
971 1051 1.210722 TGTTGTTGGTACCTCAGTGCA 59.789 47.619 14.36 9.59 0.00 4.57
972 1052 1.602377 GTGTTGTTGGTACCTCAGTGC 59.398 52.381 14.36 7.48 0.00 4.40
973 1053 2.218603 GGTGTTGTTGGTACCTCAGTG 58.781 52.381 14.36 0.00 0.00 3.66
974 1054 1.841277 TGGTGTTGTTGGTACCTCAGT 59.159 47.619 14.36 0.00 35.51 3.41
997 1097 0.968405 TTGTTCTGGGCAGCCATTTC 59.032 50.000 15.19 0.00 0.00 2.17
1635 1735 1.059584 TCACCTTGGCCTTGTCCTCA 61.060 55.000 3.32 0.00 0.00 3.86
1767 1867 1.456705 GGCCAACACCTTGAACCCA 60.457 57.895 0.00 0.00 0.00 4.51
1854 1954 2.571757 CCGCTGCGAAGTCCACTA 59.428 61.111 25.45 0.00 0.00 2.74
1874 1980 1.302033 GACTGTCCACCCACAGCAG 60.302 63.158 0.00 0.00 46.81 4.24
2008 2120 0.583438 CATTATTGTCCGCTGGCGAG 59.417 55.000 16.79 6.82 42.83 5.03
2016 2128 3.181511 ACATGCACGTTCATTATTGTCCG 60.182 43.478 0.00 0.00 0.00 4.79
2083 2203 6.765036 CAGTAGTAGTAGGAGAATTACCACGA 59.235 42.308 0.00 0.00 0.00 4.35
2084 2204 6.765036 TCAGTAGTAGTAGGAGAATTACCACG 59.235 42.308 4.35 0.00 0.00 4.94
2094 2215 7.043961 TCAAATGCATCAGTAGTAGTAGGAG 57.956 40.000 0.00 0.00 0.00 3.69
2138 2262 6.177610 ACACCACACATAGTTTATTGGGTAG 58.822 40.000 0.00 0.00 0.00 3.18
2150 2274 2.159894 CGCGTGTAAACACCACACATAG 60.160 50.000 7.63 0.00 45.29 2.23
2204 2330 8.627208 ACATATAGCAAAAGTATCATTCCCAG 57.373 34.615 0.00 0.00 0.00 4.45
2322 2450 2.783510 TCTCTTTGTTTGGGGAGAAGGT 59.216 45.455 0.00 0.00 32.76 3.50
2326 2454 4.018415 CCCTAATCTCTTTGTTTGGGGAGA 60.018 45.833 0.00 0.00 44.35 3.71
2466 2626 1.153997 GCCGTCTCGTCTTCCTGAC 60.154 63.158 0.00 0.00 42.06 3.51
2572 2749 1.670087 CGAACGACAAGCAGATCCACT 60.670 52.381 0.00 0.00 0.00 4.00
2615 2819 6.723282 AGTAACGTAGATCGGAAAGATACAC 58.277 40.000 0.00 0.00 44.69 2.90
2622 2826 7.128331 CGATAAAGAGTAACGTAGATCGGAAA 58.872 38.462 0.00 0.00 44.69 3.13
2789 2995 2.354259 AGACCACCTAACGACGACTAG 58.646 52.381 0.00 1.76 0.00 2.57
2933 3141 3.678289 ACGGTCCAGTATTAACCAAACC 58.322 45.455 0.00 0.00 32.35 3.27
2954 3162 4.908601 ACATGGATTGTGTGGTCTTCTA 57.091 40.909 0.00 0.00 37.11 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.