Multiple sequence alignment - TraesCS5A01G551900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G551900 chr5A 100.000 2565 0 0 1 2565 705303698 705306262 0.000000e+00 4737.0
1 TraesCS5A01G551900 chr7B 87.121 924 70 21 519 1407 742245195 742244286 0.000000e+00 1002.0
2 TraesCS5A01G551900 chr7B 85.623 313 27 12 3 314 742245475 742245180 1.920000e-81 313.0
3 TraesCS5A01G551900 chr7B 84.091 264 34 7 1404 1662 742244259 742243999 5.480000e-62 248.0
4 TraesCS5A01G551900 chr7B 86.441 177 24 0 2384 2560 742243411 742243235 7.240000e-46 195.0
5 TraesCS5A01G551900 chrUn 83.948 922 91 27 519 1407 108694969 108694072 0.000000e+00 830.0
6 TraesCS5A01G551900 chrUn 90.110 273 14 4 6 272 108695289 108695024 2.440000e-90 342.0
7 TraesCS5A01G551900 chrUn 85.496 262 32 4 1404 1662 108694045 108693787 4.210000e-68 268.0
8 TraesCS5A01G551900 chrUn 89.623 212 18 4 310 518 200758019 200758229 1.510000e-67 267.0
9 TraesCS5A01G551900 chrUn 89.623 212 18 4 310 518 200771139 200771349 1.510000e-67 267.0
10 TraesCS5A01G551900 chrUn 87.773 229 20 8 310 535 300146314 300146091 7.040000e-66 261.0
11 TraesCS5A01G551900 chrUn 80.734 109 16 5 1658 1764 50074098 50074203 2.120000e-11 80.5
12 TraesCS5A01G551900 chr4B 85.220 636 72 13 772 1407 665344584 665345197 3.600000e-178 634.0
13 TraesCS5A01G551900 chr4B 81.127 816 103 29 628 1407 665453099 665452299 7.850000e-170 606.0
14 TraesCS5A01G551900 chr4B 91.582 297 16 5 25 314 665343452 665343746 3.980000e-108 401.0
15 TraesCS5A01G551900 chr4B 85.174 317 23 12 3 314 665453798 665453501 1.150000e-78 303.0
16 TraesCS5A01G551900 chr4B 84.733 262 34 4 1404 1662 665345224 665345482 9.110000e-65 257.0
17 TraesCS5A01G551900 chr4B 85.654 237 31 1 2263 2496 665382855 665382619 1.970000e-61 246.0
18 TraesCS5A01G551900 chr4B 90.062 161 16 0 1404 1564 665452272 665452112 2.590000e-50 209.0
19 TraesCS5A01G551900 chr4B 93.966 116 5 1 525 638 665453510 665453395 9.430000e-40 174.0
20 TraesCS5A01G551900 chr1B 89.136 405 38 4 1663 2063 16798567 16798165 1.370000e-137 499.0
21 TraesCS5A01G551900 chr1B 87.531 409 42 5 1663 2064 16800035 16799629 5.000000e-127 464.0
22 TraesCS5A01G551900 chr1A 87.224 407 35 14 1658 2061 84482386 84482778 5.030000e-122 448.0
23 TraesCS5A01G551900 chr1A 87.282 401 35 12 1663 2061 84619602 84619988 6.510000e-121 444.0
24 TraesCS5A01G551900 chr1A 89.241 158 14 3 1663 1818 579798492 579798648 7.240000e-46 195.0
25 TraesCS5A01G551900 chr5B 93.103 290 20 0 1774 2063 559116040 559116329 2.360000e-115 425.0
26 TraesCS5A01G551900 chr7A 92.157 204 16 0 310 513 29267093 29266890 3.230000e-74 289.0
27 TraesCS5A01G551900 chr7A 96.000 50 2 0 1663 1712 111107867 111107818 5.880000e-12 82.4
28 TraesCS5A01G551900 chr6A 91.038 212 17 2 310 519 384090283 384090072 4.180000e-73 285.0
29 TraesCS5A01G551900 chr6A 89.862 217 20 2 306 520 564113883 564113667 6.990000e-71 278.0
30 TraesCS5A01G551900 chr2A 91.304 207 17 1 315 520 768372084 768372290 5.400000e-72 281.0
31 TraesCS5A01G551900 chr3A 87.500 240 22 4 1682 1919 298151533 298151300 1.170000e-68 270.0
32 TraesCS5A01G551900 chr3A 96.855 159 5 0 1905 2063 298149502 298149344 1.510000e-67 267.0
33 TraesCS5A01G551900 chr6B 89.623 212 18 4 310 518 8687232 8687442 1.510000e-67 267.0
34 TraesCS5A01G551900 chr6B 89.151 212 19 4 310 518 8670916 8671126 7.040000e-66 261.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G551900 chr5A 705303698 705306262 2564 False 4737.000000 4737 100.000000 1 2565 1 chr5A.!!$F1 2564
1 TraesCS5A01G551900 chr7B 742243235 742245475 2240 True 439.500000 1002 85.819000 3 2560 4 chr7B.!!$R1 2557
2 TraesCS5A01G551900 chrUn 108693787 108695289 1502 True 480.000000 830 86.518000 6 1662 3 chrUn.!!$R2 1656
3 TraesCS5A01G551900 chr4B 665343452 665345482 2030 False 430.666667 634 87.178333 25 1662 3 chr4B.!!$F1 1637
4 TraesCS5A01G551900 chr4B 665452112 665453798 1686 True 323.000000 606 87.582250 3 1564 4 chr4B.!!$R2 1561
5 TraesCS5A01G551900 chr1B 16798165 16800035 1870 True 481.500000 499 88.333500 1663 2064 2 chr1B.!!$R1 401
6 TraesCS5A01G551900 chr3A 298149344 298151533 2189 True 268.500000 270 92.177500 1682 2063 2 chr3A.!!$R1 381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 361 0.036952 CATGTGGACGAGACTTGCCT 60.037 55.0 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 6552 0.034616 GCTCCTCCCGATCTTGATGG 59.965 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.158295 AGAGGGATATAAGCCGAGTGGT 60.158 50.000 0.00 0.00 37.67 4.16
54 55 1.971357 AGGGATATAAGCCGAGTGGTG 59.029 52.381 0.00 0.00 37.67 4.17
85 86 0.390340 CTAGGCGCACTGAGAAGCAA 60.390 55.000 10.83 0.00 0.00 3.91
180 191 5.667466 ACATCTAACCGGACGTGATTAATT 58.333 37.500 9.46 0.00 0.00 1.40
181 192 6.808829 ACATCTAACCGGACGTGATTAATTA 58.191 36.000 9.46 0.00 0.00 1.40
267 305 7.147312 TGAACAGGCTTATCAGAAAACAAATG 58.853 34.615 0.00 0.00 0.00 2.32
290 328 0.459899 TGACCATCATTCTAGCGCGT 59.540 50.000 8.43 0.00 0.00 6.01
308 346 2.607635 GCGTTATTCGGTGTGATCATGT 59.392 45.455 0.00 0.00 40.26 3.21
309 347 3.544048 GCGTTATTCGGTGTGATCATGTG 60.544 47.826 0.00 0.00 40.26 3.21
310 348 3.001228 CGTTATTCGGTGTGATCATGTGG 59.999 47.826 0.00 0.00 35.71 4.17
311 349 4.188462 GTTATTCGGTGTGATCATGTGGA 58.812 43.478 0.00 0.00 0.00 4.02
312 350 2.093306 TTCGGTGTGATCATGTGGAC 57.907 50.000 0.00 0.00 0.00 4.02
313 351 0.108851 TCGGTGTGATCATGTGGACG 60.109 55.000 0.00 0.00 0.00 4.79
314 352 0.108851 CGGTGTGATCATGTGGACGA 60.109 55.000 0.00 0.00 0.00 4.20
315 353 1.645034 GGTGTGATCATGTGGACGAG 58.355 55.000 0.00 0.00 0.00 4.18
316 354 1.204704 GGTGTGATCATGTGGACGAGA 59.795 52.381 0.00 0.00 0.00 4.04
317 355 2.263077 GTGTGATCATGTGGACGAGAC 58.737 52.381 0.00 0.00 0.00 3.36
318 356 2.094494 GTGTGATCATGTGGACGAGACT 60.094 50.000 0.00 0.00 0.00 3.24
319 357 2.562738 TGTGATCATGTGGACGAGACTT 59.437 45.455 0.00 0.00 0.00 3.01
320 358 2.926200 GTGATCATGTGGACGAGACTTG 59.074 50.000 0.00 0.00 0.00 3.16
321 359 1.929836 GATCATGTGGACGAGACTTGC 59.070 52.381 0.00 0.00 0.00 4.01
322 360 0.037326 TCATGTGGACGAGACTTGCC 60.037 55.000 0.00 0.00 0.00 4.52
323 361 0.036952 CATGTGGACGAGACTTGCCT 60.037 55.000 0.00 0.00 0.00 4.75
324 362 0.036952 ATGTGGACGAGACTTGCCTG 60.037 55.000 0.00 0.00 0.00 4.85
325 363 2.029844 GTGGACGAGACTTGCCTGC 61.030 63.158 0.00 0.00 0.00 4.85
326 364 2.210013 TGGACGAGACTTGCCTGCT 61.210 57.895 0.00 0.00 0.00 4.24
327 365 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
328 366 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
329 367 2.125350 CGAGACTTGCCTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
330 368 2.270527 GAGACTTGCCTGCTCCCC 59.729 66.667 0.00 0.00 0.00 4.81
331 369 3.334054 AGACTTGCCTGCTCCCCC 61.334 66.667 0.00 0.00 0.00 5.40
332 370 3.650950 GACTTGCCTGCTCCCCCA 61.651 66.667 0.00 0.00 0.00 4.96
333 371 3.635268 GACTTGCCTGCTCCCCCAG 62.635 68.421 0.00 0.00 0.00 4.45
342 380 4.785453 CTCCCCCAGCGTGCTTCC 62.785 72.222 0.00 0.00 0.00 3.46
344 382 4.431131 CCCCCAGCGTGCTTCCAT 62.431 66.667 0.00 0.00 0.00 3.41
345 383 2.825836 CCCCAGCGTGCTTCCATC 60.826 66.667 0.00 0.00 0.00 3.51
346 384 2.825836 CCCAGCGTGCTTCCATCC 60.826 66.667 0.00 0.00 0.00 3.51
347 385 3.197790 CCAGCGTGCTTCCATCCG 61.198 66.667 0.00 0.00 0.00 4.18
348 386 2.434884 CAGCGTGCTTCCATCCGT 60.435 61.111 0.00 0.00 0.00 4.69
349 387 2.434884 AGCGTGCTTCCATCCGTG 60.435 61.111 0.00 0.00 0.00 4.94
350 388 4.166011 GCGTGCTTCCATCCGTGC 62.166 66.667 0.00 0.00 0.00 5.34
351 389 2.434884 CGTGCTTCCATCCGTGCT 60.435 61.111 0.00 0.00 0.00 4.40
352 390 2.456119 CGTGCTTCCATCCGTGCTC 61.456 63.158 0.00 0.00 0.00 4.26
353 391 2.109126 GTGCTTCCATCCGTGCTCC 61.109 63.158 0.00 0.00 0.00 4.70
354 392 2.514824 GCTTCCATCCGTGCTCCC 60.515 66.667 0.00 0.00 0.00 4.30
355 393 2.202932 CTTCCATCCGTGCTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
356 394 4.467084 TTCCATCCGTGCTCCCGC 62.467 66.667 0.00 0.00 0.00 6.13
365 403 2.183300 TGCTCCCGCATACGTGAC 59.817 61.111 0.00 0.00 42.25 3.67
366 404 2.183300 GCTCCCGCATACGTGACA 59.817 61.111 0.00 0.00 37.70 3.58
367 405 1.227263 GCTCCCGCATACGTGACAT 60.227 57.895 0.00 0.00 37.70 3.06
368 406 1.490693 GCTCCCGCATACGTGACATG 61.491 60.000 0.00 0.00 37.70 3.21
369 407 0.102300 CTCCCGCATACGTGACATGA 59.898 55.000 0.00 0.00 37.70 3.07
370 408 0.750249 TCCCGCATACGTGACATGAT 59.250 50.000 0.00 0.00 37.70 2.45
371 409 1.138069 TCCCGCATACGTGACATGATT 59.862 47.619 0.00 0.00 37.70 2.57
372 410 1.939934 CCCGCATACGTGACATGATTT 59.060 47.619 0.00 0.00 37.70 2.17
373 411 2.286359 CCCGCATACGTGACATGATTTG 60.286 50.000 0.00 0.00 37.70 2.32
374 412 2.607180 CCGCATACGTGACATGATTTGA 59.393 45.455 0.00 0.00 37.70 2.69
375 413 3.248363 CCGCATACGTGACATGATTTGAT 59.752 43.478 0.00 0.00 37.70 2.57
376 414 4.260743 CCGCATACGTGACATGATTTGATT 60.261 41.667 0.00 0.00 37.70 2.57
377 415 4.667504 CGCATACGTGACATGATTTGATTG 59.332 41.667 0.00 0.00 33.53 2.67
378 416 5.502220 CGCATACGTGACATGATTTGATTGA 60.502 40.000 0.00 0.00 33.53 2.57
379 417 6.257423 GCATACGTGACATGATTTGATTGAA 58.743 36.000 0.00 0.00 0.00 2.69
380 418 6.746822 GCATACGTGACATGATTTGATTGAAA 59.253 34.615 0.00 0.00 0.00 2.69
381 419 7.253420 GCATACGTGACATGATTTGATTGAAAC 60.253 37.037 0.00 0.00 0.00 2.78
382 420 6.070897 ACGTGACATGATTTGATTGAAACA 57.929 33.333 0.00 0.00 0.00 2.83
383 421 6.502652 ACGTGACATGATTTGATTGAAACAA 58.497 32.000 0.00 0.00 0.00 2.83
384 422 6.977502 ACGTGACATGATTTGATTGAAACAAA 59.022 30.769 0.00 3.11 40.62 2.83
385 423 7.490725 ACGTGACATGATTTGATTGAAACAAAA 59.509 29.630 4.74 0.00 39.95 2.44
386 424 8.489559 CGTGACATGATTTGATTGAAACAAAAT 58.510 29.630 4.74 0.00 39.95 1.82
391 429 9.763465 CATGATTTGATTGAAACAAAATAAGGC 57.237 29.630 4.74 0.00 39.95 4.35
392 430 8.321650 TGATTTGATTGAAACAAAATAAGGCC 57.678 30.769 4.74 0.00 39.95 5.19
393 431 7.390162 TGATTTGATTGAAACAAAATAAGGCCC 59.610 33.333 4.74 0.00 39.95 5.80
394 432 4.815269 TGATTGAAACAAAATAAGGCCCG 58.185 39.130 0.00 0.00 0.00 6.13
395 433 4.524714 TGATTGAAACAAAATAAGGCCCGA 59.475 37.500 0.00 0.00 0.00 5.14
396 434 3.926821 TGAAACAAAATAAGGCCCGAC 57.073 42.857 0.00 0.00 0.00 4.79
397 435 2.559231 TGAAACAAAATAAGGCCCGACC 59.441 45.455 0.00 0.00 39.61 4.79
398 436 1.552578 AACAAAATAAGGCCCGACCC 58.447 50.000 0.00 0.00 40.58 4.46
399 437 0.323999 ACAAAATAAGGCCCGACCCC 60.324 55.000 0.00 0.00 40.58 4.95
400 438 0.323908 CAAAATAAGGCCCGACCCCA 60.324 55.000 0.00 0.00 40.58 4.96
401 439 0.323999 AAAATAAGGCCCGACCCCAC 60.324 55.000 0.00 0.00 40.58 4.61
402 440 2.219449 AAATAAGGCCCGACCCCACC 62.219 60.000 0.00 0.00 40.58 4.61
408 446 2.611486 CCCGACCCCACCCCTTAA 60.611 66.667 0.00 0.00 0.00 1.85
409 447 2.232836 CCCGACCCCACCCCTTAAA 61.233 63.158 0.00 0.00 0.00 1.52
410 448 1.769006 CCGACCCCACCCCTTAAAA 59.231 57.895 0.00 0.00 0.00 1.52
411 449 0.333652 CCGACCCCACCCCTTAAAAT 59.666 55.000 0.00 0.00 0.00 1.82
412 450 1.683938 CCGACCCCACCCCTTAAAATC 60.684 57.143 0.00 0.00 0.00 2.17
413 451 1.004979 CGACCCCACCCCTTAAAATCA 59.995 52.381 0.00 0.00 0.00 2.57
414 452 2.735151 GACCCCACCCCTTAAAATCAG 58.265 52.381 0.00 0.00 0.00 2.90
415 453 1.361197 ACCCCACCCCTTAAAATCAGG 59.639 52.381 0.00 0.00 0.00 3.86
476 514 3.570926 AGTCGTAGAATGAAGTGCGAA 57.429 42.857 0.00 0.00 39.69 4.70
477 515 3.243336 AGTCGTAGAATGAAGTGCGAAC 58.757 45.455 0.00 0.00 39.69 3.95
478 516 3.057456 AGTCGTAGAATGAAGTGCGAACT 60.057 43.478 0.00 0.00 39.69 3.01
479 517 4.155462 AGTCGTAGAATGAAGTGCGAACTA 59.845 41.667 0.00 0.00 39.69 2.24
480 518 4.496183 GTCGTAGAATGAAGTGCGAACTAG 59.504 45.833 0.00 0.00 39.69 2.57
481 519 3.791887 CGTAGAATGAAGTGCGAACTAGG 59.208 47.826 0.00 0.00 0.00 3.02
482 520 4.438336 CGTAGAATGAAGTGCGAACTAGGA 60.438 45.833 0.00 0.00 0.00 2.94
483 521 4.744795 AGAATGAAGTGCGAACTAGGAT 57.255 40.909 0.00 0.00 0.00 3.24
484 522 4.437239 AGAATGAAGTGCGAACTAGGATG 58.563 43.478 0.00 0.00 0.00 3.51
485 523 4.160439 AGAATGAAGTGCGAACTAGGATGA 59.840 41.667 0.00 0.00 0.00 2.92
486 524 3.510388 TGAAGTGCGAACTAGGATGAG 57.490 47.619 0.00 0.00 0.00 2.90
487 525 3.089284 TGAAGTGCGAACTAGGATGAGA 58.911 45.455 0.00 0.00 0.00 3.27
488 526 3.129462 TGAAGTGCGAACTAGGATGAGAG 59.871 47.826 0.00 0.00 0.00 3.20
489 527 1.407258 AGTGCGAACTAGGATGAGAGC 59.593 52.381 0.00 0.00 0.00 4.09
490 528 0.382158 TGCGAACTAGGATGAGAGCG 59.618 55.000 0.00 0.00 0.00 5.03
491 529 0.382515 GCGAACTAGGATGAGAGCGT 59.617 55.000 0.00 0.00 0.00 5.07
492 530 1.862008 GCGAACTAGGATGAGAGCGTG 60.862 57.143 0.00 0.00 0.00 5.34
493 531 1.671328 CGAACTAGGATGAGAGCGTGA 59.329 52.381 0.00 0.00 0.00 4.35
494 532 2.286713 CGAACTAGGATGAGAGCGTGAG 60.287 54.545 0.00 0.00 0.00 3.51
495 533 1.686355 ACTAGGATGAGAGCGTGAGG 58.314 55.000 0.00 0.00 0.00 3.86
496 534 1.213182 ACTAGGATGAGAGCGTGAGGA 59.787 52.381 0.00 0.00 0.00 3.71
497 535 1.879380 CTAGGATGAGAGCGTGAGGAG 59.121 57.143 0.00 0.00 0.00 3.69
498 536 0.754957 AGGATGAGAGCGTGAGGAGG 60.755 60.000 0.00 0.00 0.00 4.30
499 537 1.739049 GATGAGAGCGTGAGGAGGG 59.261 63.158 0.00 0.00 0.00 4.30
500 538 0.753479 GATGAGAGCGTGAGGAGGGA 60.753 60.000 0.00 0.00 0.00 4.20
501 539 0.754957 ATGAGAGCGTGAGGAGGGAG 60.755 60.000 0.00 0.00 0.00 4.30
502 540 2.757917 AGAGCGTGAGGAGGGAGC 60.758 66.667 0.00 0.00 0.00 4.70
503 541 3.071206 GAGCGTGAGGAGGGAGCA 61.071 66.667 0.00 0.00 0.00 4.26
504 542 3.073735 AGCGTGAGGAGGGAGCAG 61.074 66.667 0.00 0.00 0.00 4.24
505 543 4.154347 GCGTGAGGAGGGAGCAGG 62.154 72.222 0.00 0.00 0.00 4.85
506 544 4.154347 CGTGAGGAGGGAGCAGGC 62.154 72.222 0.00 0.00 0.00 4.85
507 545 3.005539 GTGAGGAGGGAGCAGGCA 61.006 66.667 0.00 0.00 0.00 4.75
508 546 2.203983 TGAGGAGGGAGCAGGCAA 60.204 61.111 0.00 0.00 0.00 4.52
509 547 2.296365 TGAGGAGGGAGCAGGCAAG 61.296 63.158 0.00 0.00 0.00 4.01
510 548 3.695747 GAGGAGGGAGCAGGCAAGC 62.696 68.421 0.00 0.00 0.00 4.01
511 549 4.811364 GGAGGGAGCAGGCAAGCC 62.811 72.222 2.02 2.02 34.23 4.35
515 553 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
516 554 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
517 555 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
519 557 4.473520 CAGGCAAGCCGGATCCGT 62.474 66.667 31.22 12.64 41.95 4.69
520 558 4.473520 AGGCAAGCCGGATCCGTG 62.474 66.667 31.22 23.53 41.95 4.94
521 559 4.467084 GGCAAGCCGGATCCGTGA 62.467 66.667 31.22 0.00 37.81 4.35
522 560 3.195698 GCAAGCCGGATCCGTGAC 61.196 66.667 31.22 20.20 37.81 3.67
523 561 2.511600 CAAGCCGGATCCGTGACC 60.512 66.667 31.22 16.62 37.81 4.02
524 562 3.000819 AAGCCGGATCCGTGACCA 61.001 61.111 31.22 0.00 37.81 4.02
525 563 2.367202 AAGCCGGATCCGTGACCAT 61.367 57.895 31.22 9.56 37.81 3.55
526 564 2.588877 GCCGGATCCGTGACCATG 60.589 66.667 31.22 15.83 37.81 3.66
545 583 3.475774 GGCACGCACGTCCGTTAG 61.476 66.667 0.00 0.00 39.83 2.34
551 589 2.956987 CACGTCCGTTAGTCCCGT 59.043 61.111 0.00 0.00 0.00 5.28
565 603 2.700371 AGTCCCGTTGAGATCATGCATA 59.300 45.455 0.00 0.00 0.00 3.14
661 1582 0.478507 AAAACTCCAGACCCACCCTG 59.521 55.000 0.00 0.00 0.00 4.45
662 1583 0.401395 AAACTCCAGACCCACCCTGA 60.401 55.000 0.00 0.00 33.65 3.86
675 1599 4.666907 ACCCACCCTGAATCATATCATTCT 59.333 41.667 0.81 0.00 34.35 2.40
680 1604 7.389884 CCACCCTGAATCATATCATTCTAACTG 59.610 40.741 0.81 0.00 34.35 3.16
689 1613 7.101700 TCATATCATTCTAACTGCCAGCTATG 58.898 38.462 0.00 0.00 0.00 2.23
729 1653 2.035321 GCCTGTCTTCTCCTAATCTCCG 59.965 54.545 0.00 0.00 0.00 4.63
795 1763 4.102035 TGACATGAGAGTCAACATCTCG 57.898 45.455 0.00 0.00 44.92 4.04
841 1809 8.246908 ACAACGTAATCGAATGAGAATAAACA 57.753 30.769 0.00 0.00 40.62 2.83
859 1827 4.485024 AACACAGTGACAGACTAGTACG 57.515 45.455 7.81 0.00 31.73 3.67
860 1828 2.225963 ACACAGTGACAGACTAGTACGC 59.774 50.000 7.81 0.00 31.73 4.42
861 1829 1.811359 ACAGTGACAGACTAGTACGCC 59.189 52.381 0.00 0.00 31.73 5.68
862 1830 1.132643 CAGTGACAGACTAGTACGCCC 59.867 57.143 0.00 0.00 31.73 6.13
863 1831 1.171308 GTGACAGACTAGTACGCCCA 58.829 55.000 0.00 0.00 0.00 5.36
864 1832 1.749634 GTGACAGACTAGTACGCCCAT 59.250 52.381 0.00 0.00 0.00 4.00
947 1915 2.603652 AAGCCGGAGACCCCTTTCC 61.604 63.158 5.05 0.00 0.00 3.13
960 1928 1.912043 CCCTTTCCTCATCACACCTCT 59.088 52.381 0.00 0.00 0.00 3.69
1005 1982 3.937706 GCTAATCAAGATCGATCATGGGG 59.062 47.826 25.60 15.63 0.00 4.96
1065 2042 2.438434 GCGGCCATGGCAACTAGT 60.438 61.111 36.56 0.00 44.11 2.57
1161 2138 4.988598 CCGCCGTGCCTGAACAGT 62.989 66.667 1.18 0.00 0.00 3.55
1165 2142 1.737696 CGCCGTGCCTGAACAGTATAA 60.738 52.381 1.18 0.00 0.00 0.98
1186 2163 1.138247 GTGTGCGGGGTAGTCTACG 59.862 63.158 3.92 0.00 0.00 3.51
1187 2164 2.048023 TGTGCGGGGTAGTCTACGG 61.048 63.158 3.92 0.00 0.00 4.02
1206 2183 4.785453 GACCCCTCCAAGCTGGCG 62.785 72.222 0.00 0.00 37.47 5.69
1238 2215 1.512926 GCGGTCAAGAAGCTCTTCAA 58.487 50.000 11.69 0.00 41.84 2.69
1239 2216 1.462670 GCGGTCAAGAAGCTCTTCAAG 59.537 52.381 11.69 4.21 41.84 3.02
1271 2248 3.853330 CATCTGCAACGCCGTCGG 61.853 66.667 6.99 6.99 40.69 4.79
1285 2262 2.203788 TCGGTGAGGCCCAGAAGT 60.204 61.111 0.00 0.00 0.00 3.01
1294 2271 0.889186 GGCCCAGAAGTTCGCAAAGA 60.889 55.000 0.00 0.00 0.00 2.52
1298 2275 2.031682 CCCAGAAGTTCGCAAAGAAGTG 60.032 50.000 0.00 0.00 41.41 3.16
1299 2276 2.031682 CCAGAAGTTCGCAAAGAAGTGG 60.032 50.000 0.00 0.00 41.41 4.00
1345 2322 2.045926 AGATGTTCCGCCAGTGCC 60.046 61.111 0.00 0.00 0.00 5.01
1354 2331 2.591753 GCCAGTGCCAGATGCCTA 59.408 61.111 0.00 0.00 40.16 3.93
1355 2332 1.821332 GCCAGTGCCAGATGCCTAC 60.821 63.158 0.00 0.00 40.16 3.18
1384 2364 1.152138 GACCCCCGAAAACCAGGTT 59.848 57.895 0.00 0.00 0.00 3.50
1398 2378 7.361713 CGAAAACCAGGTTAGAAAGATGCATTA 60.362 37.037 4.87 0.00 0.00 1.90
1399 2379 7.961326 AAACCAGGTTAGAAAGATGCATTAT 57.039 32.000 4.87 0.00 0.00 1.28
1461 2471 6.662414 TTATATCGAAGCTCTGTTGTTTGG 57.338 37.500 0.00 0.00 0.00 3.28
1466 2476 3.003689 CGAAGCTCTGTTGTTTGGTGAAT 59.996 43.478 0.00 0.00 0.00 2.57
1478 2488 4.240096 GTTTGGTGAATTTGCAGGATCAG 58.760 43.478 0.00 0.00 0.00 2.90
1483 2493 5.246656 TGGTGAATTTGCAGGATCAGAAAAT 59.753 36.000 0.00 0.00 0.00 1.82
1494 2504 6.423001 GCAGGATCAGAAAATATTGGAAATGC 59.577 38.462 0.00 0.00 0.00 3.56
1495 2505 6.639686 CAGGATCAGAAAATATTGGAAATGCG 59.360 38.462 0.00 0.00 0.00 4.73
1500 2510 1.786937 AATATTGGAAATGCGGCCCA 58.213 45.000 0.00 0.00 0.00 5.36
1510 2520 4.274700 GCGGCCCATACTACGCGA 62.275 66.667 15.93 0.00 42.66 5.87
1521 2531 0.108329 ACTACGCGATCCTTTGGTGG 60.108 55.000 15.93 0.00 0.00 4.61
1564 2574 8.997323 GTCTTCCCATTATTCTTCATGATGTAG 58.003 37.037 8.33 0.00 28.57 2.74
1565 2575 8.159447 TCTTCCCATTATTCTTCATGATGTAGG 58.841 37.037 8.33 3.66 28.57 3.18
1568 2578 6.243900 CCATTATTCTTCATGATGTAGGCCT 58.756 40.000 11.78 11.78 28.57 5.19
1569 2579 6.150641 CCATTATTCTTCATGATGTAGGCCTG 59.849 42.308 17.99 0.00 28.57 4.85
1579 2589 1.990060 GTAGGCCTGGAGTGCTGGA 60.990 63.158 17.99 0.00 0.00 3.86
1584 2596 4.463879 CTGGAGTGCTGGAGGGCG 62.464 72.222 0.00 0.00 34.52 6.13
1617 2629 3.878160 TTTTTGGCACTCCGTTTCTTT 57.122 38.095 0.00 0.00 34.14 2.52
1618 2630 3.430333 TTTTGGCACTCCGTTTCTTTC 57.570 42.857 0.00 0.00 34.14 2.62
1619 2631 2.045561 TTGGCACTCCGTTTCTTTCA 57.954 45.000 0.00 0.00 34.14 2.69
1679 2692 6.983474 TGATCACACATCAAATAACACGAT 57.017 33.333 0.00 0.00 0.00 3.73
1687 2700 6.019152 ACATCAAATAACACGATAAACACGC 58.981 36.000 0.00 0.00 0.00 5.34
1725 2738 2.612493 AAGGGCCCGTATTGTGCCT 61.612 57.895 18.44 0.00 44.71 4.75
1745 2758 7.826744 TGTGCCTTTTGTTTTCCTCTTTATTTT 59.173 29.630 0.00 0.00 0.00 1.82
1772 4269 2.170397 TCTGGTTTTCTCTGTGCTCACA 59.830 45.455 2.48 2.48 39.32 3.58
1836 4333 1.468520 CATGACCATCGTGAACCCAAC 59.531 52.381 0.00 0.00 35.46 3.77
1902 4399 7.494952 GCTAACATAAGGAAACTCTAAACCGAT 59.505 37.037 0.00 0.00 42.68 4.18
1916 6225 9.939802 ACTCTAAACCGATTTGTCTATACTTTT 57.060 29.630 0.00 0.00 0.00 2.27
2033 6342 9.080097 CCTAGTTAACTAGCATACTCCTAACAT 57.920 37.037 29.72 0.00 43.47 2.71
2045 6354 9.937175 GCATACTCCTAACATAACTCAAATTTC 57.063 33.333 0.00 0.00 0.00 2.17
2071 6468 4.404394 TGGATTAAGCTAACATCCGAGACA 59.596 41.667 12.05 0.00 39.64 3.41
2075 6472 1.759445 AGCTAACATCCGAGACATGCT 59.241 47.619 0.00 0.00 0.00 3.79
2077 6474 2.481969 GCTAACATCCGAGACATGCTGA 60.482 50.000 0.00 0.00 0.00 4.26
2091 6488 6.753180 AGACATGCTGATATTAGTCGATGTT 58.247 36.000 0.00 0.00 0.00 2.71
2096 6493 7.643528 TGCTGATATTAGTCGATGTTTGATC 57.356 36.000 0.00 0.00 0.00 2.92
2100 6497 9.254133 CTGATATTAGTCGATGTTTGATCTTGT 57.746 33.333 0.00 0.00 0.00 3.16
2107 6504 5.291858 GTCGATGTTTGATCTTGTAGCATGA 59.708 40.000 0.00 0.00 0.00 3.07
2108 6505 5.521372 TCGATGTTTGATCTTGTAGCATGAG 59.479 40.000 0.00 0.00 0.00 2.90
2117 6514 4.436332 TCTTGTAGCATGAGCACACATAG 58.564 43.478 0.00 0.00 45.49 2.23
2129 6526 4.132336 AGCACACATAGCACATAATCTGG 58.868 43.478 0.00 0.00 0.00 3.86
2141 6538 5.280945 CACATAATCTGGTAAATTTGGCCG 58.719 41.667 0.00 1.10 0.00 6.13
2142 6539 4.953579 ACATAATCTGGTAAATTTGGCCGT 59.046 37.500 0.00 0.00 0.00 5.68
2143 6540 5.420739 ACATAATCTGGTAAATTTGGCCGTT 59.579 36.000 0.00 3.32 0.00 4.44
2144 6541 6.603997 ACATAATCTGGTAAATTTGGCCGTTA 59.396 34.615 0.00 5.12 0.00 3.18
2145 6542 5.986501 AATCTGGTAAATTTGGCCGTTAA 57.013 34.783 0.00 0.00 0.00 2.01
2146 6543 5.986501 ATCTGGTAAATTTGGCCGTTAAA 57.013 34.783 0.00 0.00 0.00 1.52
2147 6544 5.786264 TCTGGTAAATTTGGCCGTTAAAA 57.214 34.783 0.00 0.00 0.00 1.52
2148 6545 6.347859 TCTGGTAAATTTGGCCGTTAAAAT 57.652 33.333 0.00 0.00 0.00 1.82
2149 6546 6.760291 TCTGGTAAATTTGGCCGTTAAAATT 58.240 32.000 0.00 5.83 37.54 1.82
2150 6547 6.869388 TCTGGTAAATTTGGCCGTTAAAATTC 59.131 34.615 10.89 2.00 35.47 2.17
2151 6548 6.522054 TGGTAAATTTGGCCGTTAAAATTCA 58.478 32.000 10.89 4.19 35.47 2.57
2152 6549 6.647067 TGGTAAATTTGGCCGTTAAAATTCAG 59.353 34.615 10.89 0.00 35.47 3.02
2153 6550 5.605564 AAATTTGGCCGTTAAAATTCAGC 57.394 34.783 10.89 0.00 35.47 4.26
2154 6551 2.734276 TTGGCCGTTAAAATTCAGCC 57.266 45.000 0.00 0.00 40.87 4.85
2155 6552 0.892063 TGGCCGTTAAAATTCAGCCC 59.108 50.000 0.00 0.00 39.72 5.19
2156 6553 0.174845 GGCCGTTAAAATTCAGCCCC 59.825 55.000 0.00 0.00 34.23 5.80
2157 6554 0.892063 GCCGTTAAAATTCAGCCCCA 59.108 50.000 0.00 0.00 0.00 4.96
2158 6555 1.480545 GCCGTTAAAATTCAGCCCCAT 59.519 47.619 0.00 0.00 0.00 4.00
2159 6556 2.481276 GCCGTTAAAATTCAGCCCCATC 60.481 50.000 0.00 0.00 0.00 3.51
2160 6557 2.757868 CCGTTAAAATTCAGCCCCATCA 59.242 45.455 0.00 0.00 0.00 3.07
2161 6558 3.194542 CCGTTAAAATTCAGCCCCATCAA 59.805 43.478 0.00 0.00 0.00 2.57
2162 6559 4.423732 CGTTAAAATTCAGCCCCATCAAG 58.576 43.478 0.00 0.00 0.00 3.02
2163 6560 4.157656 CGTTAAAATTCAGCCCCATCAAGA 59.842 41.667 0.00 0.00 0.00 3.02
2164 6561 5.163519 CGTTAAAATTCAGCCCCATCAAGAT 60.164 40.000 0.00 0.00 0.00 2.40
2165 6562 6.276091 GTTAAAATTCAGCCCCATCAAGATC 58.724 40.000 0.00 0.00 0.00 2.75
2166 6563 2.267174 ATTCAGCCCCATCAAGATCG 57.733 50.000 0.00 0.00 0.00 3.69
2167 6564 0.181114 TTCAGCCCCATCAAGATCGG 59.819 55.000 0.00 0.00 0.00 4.18
2168 6565 1.228063 CAGCCCCATCAAGATCGGG 60.228 63.158 8.24 8.24 41.55 5.14
2169 6566 1.384502 AGCCCCATCAAGATCGGGA 60.385 57.895 15.82 0.00 41.18 5.14
2170 6567 1.072159 GCCCCATCAAGATCGGGAG 59.928 63.158 15.82 8.49 41.18 4.30
2171 6568 1.757306 CCCCATCAAGATCGGGAGG 59.243 63.158 6.90 0.00 41.18 4.30
2172 6569 0.764369 CCCCATCAAGATCGGGAGGA 60.764 60.000 6.90 0.00 41.18 3.71
2173 6570 0.683973 CCCATCAAGATCGGGAGGAG 59.316 60.000 10.32 0.00 43.21 3.69
2174 6571 0.034616 CCATCAAGATCGGGAGGAGC 59.965 60.000 3.39 0.00 0.00 4.70
2175 6572 0.755079 CATCAAGATCGGGAGGAGCA 59.245 55.000 0.00 0.00 32.03 4.26
2176 6573 1.347050 CATCAAGATCGGGAGGAGCAT 59.653 52.381 0.00 0.00 32.03 3.79
2177 6574 2.381752 TCAAGATCGGGAGGAGCATA 57.618 50.000 0.00 0.00 32.03 3.14
2178 6575 1.964223 TCAAGATCGGGAGGAGCATAC 59.036 52.381 0.00 0.00 32.03 2.39
2179 6576 1.688735 CAAGATCGGGAGGAGCATACA 59.311 52.381 0.00 0.00 32.03 2.29
2180 6577 2.301296 CAAGATCGGGAGGAGCATACAT 59.699 50.000 0.00 0.00 32.03 2.29
2181 6578 2.614259 AGATCGGGAGGAGCATACATT 58.386 47.619 0.00 0.00 32.03 2.71
2182 6579 2.975489 AGATCGGGAGGAGCATACATTT 59.025 45.455 0.00 0.00 32.03 2.32
2183 6580 2.910688 TCGGGAGGAGCATACATTTC 57.089 50.000 0.00 0.00 0.00 2.17
2184 6581 1.068588 TCGGGAGGAGCATACATTTCG 59.931 52.381 0.00 0.00 0.00 3.46
2185 6582 1.068588 CGGGAGGAGCATACATTTCGA 59.931 52.381 0.00 0.00 0.00 3.71
2186 6583 2.760374 GGGAGGAGCATACATTTCGAG 58.240 52.381 0.00 0.00 0.00 4.04
2187 6584 2.103263 GGGAGGAGCATACATTTCGAGT 59.897 50.000 0.00 0.00 0.00 4.18
2188 6585 3.432326 GGGAGGAGCATACATTTCGAGTT 60.432 47.826 0.00 0.00 0.00 3.01
2189 6586 4.192317 GGAGGAGCATACATTTCGAGTTT 58.808 43.478 0.00 0.00 0.00 2.66
2190 6587 4.636206 GGAGGAGCATACATTTCGAGTTTT 59.364 41.667 0.00 0.00 0.00 2.43
2191 6588 5.815740 GGAGGAGCATACATTTCGAGTTTTA 59.184 40.000 0.00 0.00 0.00 1.52
2192 6589 6.018669 GGAGGAGCATACATTTCGAGTTTTAG 60.019 42.308 0.00 0.00 0.00 1.85
2193 6590 5.294552 AGGAGCATACATTTCGAGTTTTAGC 59.705 40.000 0.00 0.00 0.00 3.09
2194 6591 5.064707 GGAGCATACATTTCGAGTTTTAGCA 59.935 40.000 0.00 0.00 0.00 3.49
2195 6592 6.238484 GGAGCATACATTTCGAGTTTTAGCAT 60.238 38.462 0.00 0.00 0.00 3.79
2196 6593 7.042051 GGAGCATACATTTCGAGTTTTAGCATA 60.042 37.037 0.00 0.00 0.00 3.14
2197 6594 8.383318 AGCATACATTTCGAGTTTTAGCATAT 57.617 30.769 0.00 0.00 0.00 1.78
2198 6595 8.285394 AGCATACATTTCGAGTTTTAGCATATG 58.715 33.333 0.00 0.00 0.00 1.78
2199 6596 8.070171 GCATACATTTCGAGTTTTAGCATATGT 58.930 33.333 4.29 0.00 0.00 2.29
2200 6597 9.373750 CATACATTTCGAGTTTTAGCATATGTG 57.626 33.333 4.29 0.00 0.00 3.21
2201 6598 6.785191 ACATTTCGAGTTTTAGCATATGTGG 58.215 36.000 4.29 0.00 0.00 4.17
2202 6599 6.374333 ACATTTCGAGTTTTAGCATATGTGGT 59.626 34.615 4.29 0.00 39.78 4.16
2203 6600 5.794687 TTCGAGTTTTAGCATATGTGGTG 57.205 39.130 4.21 0.00 37.28 4.17
2204 6601 4.188462 TCGAGTTTTAGCATATGTGGTGG 58.812 43.478 4.21 0.00 37.28 4.61
2205 6602 4.081365 TCGAGTTTTAGCATATGTGGTGGA 60.081 41.667 4.21 0.00 37.28 4.02
2206 6603 4.271049 CGAGTTTTAGCATATGTGGTGGAG 59.729 45.833 4.21 0.00 37.28 3.86
2207 6604 5.179452 AGTTTTAGCATATGTGGTGGAGT 57.821 39.130 4.21 0.00 37.28 3.85
2208 6605 6.308015 AGTTTTAGCATATGTGGTGGAGTA 57.692 37.500 4.21 0.00 37.28 2.59
2209 6606 6.717289 AGTTTTAGCATATGTGGTGGAGTAA 58.283 36.000 4.21 0.00 37.28 2.24
2210 6607 7.346471 AGTTTTAGCATATGTGGTGGAGTAAT 58.654 34.615 4.21 0.00 37.28 1.89
2211 6608 8.491134 AGTTTTAGCATATGTGGTGGAGTAATA 58.509 33.333 4.21 0.00 37.28 0.98
2212 6609 8.774586 GTTTTAGCATATGTGGTGGAGTAATAG 58.225 37.037 4.21 0.00 37.28 1.73
2213 6610 7.849322 TTAGCATATGTGGTGGAGTAATAGA 57.151 36.000 4.21 0.00 37.28 1.98
2214 6611 6.942163 AGCATATGTGGTGGAGTAATAGAT 57.058 37.500 4.29 0.00 34.14 1.98
2215 6612 9.541884 TTAGCATATGTGGTGGAGTAATAGATA 57.458 33.333 4.21 0.00 37.28 1.98
2216 6613 8.615360 AGCATATGTGGTGGAGTAATAGATAT 57.385 34.615 4.29 0.00 34.14 1.63
2217 6614 8.700051 AGCATATGTGGTGGAGTAATAGATATC 58.300 37.037 4.29 0.00 34.14 1.63
2218 6615 8.700051 GCATATGTGGTGGAGTAATAGATATCT 58.300 37.037 10.73 10.73 0.00 1.98
2222 6619 9.693739 ATGTGGTGGAGTAATAGATATCTCTAG 57.306 37.037 8.95 0.00 37.41 2.43
2223 6620 8.891501 TGTGGTGGAGTAATAGATATCTCTAGA 58.108 37.037 8.95 0.00 37.41 2.43
2224 6621 9.391006 GTGGTGGAGTAATAGATATCTCTAGAG 57.609 40.741 13.98 13.98 37.41 2.43
2225 6622 9.340223 TGGTGGAGTAATAGATATCTCTAGAGA 57.660 37.037 24.36 24.36 42.37 3.10
2226 6623 9.609346 GGTGGAGTAATAGATATCTCTAGAGAC 57.391 40.741 24.62 12.27 40.75 3.36
2229 6626 9.745880 GGAGTAATAGATATCTCTAGAGACTCG 57.254 40.741 24.62 0.00 39.25 4.18
2236 6633 8.997621 AGATATCTCTAGAGACTCGTTATGTC 57.002 38.462 24.62 13.86 40.75 3.06
2237 6634 8.590204 AGATATCTCTAGAGACTCGTTATGTCA 58.410 37.037 24.62 0.00 40.75 3.58
2238 6635 9.378551 GATATCTCTAGAGACTCGTTATGTCAT 57.621 37.037 24.62 6.73 40.75 3.06
2239 6636 9.733556 ATATCTCTAGAGACTCGTTATGTCATT 57.266 33.333 24.62 6.30 40.75 2.57
2240 6637 7.252965 TCTCTAGAGACTCGTTATGTCATTG 57.747 40.000 18.76 0.00 36.94 2.82
2241 6638 6.824196 TCTCTAGAGACTCGTTATGTCATTGT 59.176 38.462 18.76 0.00 36.94 2.71
2242 6639 6.786207 TCTAGAGACTCGTTATGTCATTGTG 58.214 40.000 0.00 0.00 36.94 3.33
2243 6640 4.177026 AGAGACTCGTTATGTCATTGTGC 58.823 43.478 0.00 0.00 36.94 4.57
2244 6641 4.081972 AGAGACTCGTTATGTCATTGTGCT 60.082 41.667 0.00 0.00 36.94 4.40
2245 6642 5.125578 AGAGACTCGTTATGTCATTGTGCTA 59.874 40.000 0.00 0.00 36.94 3.49
2246 6643 5.344066 AGACTCGTTATGTCATTGTGCTAG 58.656 41.667 0.00 0.00 36.94 3.42
2247 6644 5.073311 ACTCGTTATGTCATTGTGCTAGT 57.927 39.130 0.00 0.00 0.00 2.57
2248 6645 6.095021 AGACTCGTTATGTCATTGTGCTAGTA 59.905 38.462 0.00 0.00 36.94 1.82
2249 6646 6.806751 ACTCGTTATGTCATTGTGCTAGTAT 58.193 36.000 0.00 0.00 0.00 2.12
2250 6647 6.697455 ACTCGTTATGTCATTGTGCTAGTATG 59.303 38.462 0.00 0.00 0.00 2.39
2251 6648 6.569780 TCGTTATGTCATTGTGCTAGTATGT 58.430 36.000 0.00 0.00 0.00 2.29
2252 6649 7.708998 TCGTTATGTCATTGTGCTAGTATGTA 58.291 34.615 0.00 0.00 0.00 2.29
2253 6650 8.192110 TCGTTATGTCATTGTGCTAGTATGTAA 58.808 33.333 0.00 0.00 0.00 2.41
2254 6651 8.978539 CGTTATGTCATTGTGCTAGTATGTAAT 58.021 33.333 0.00 0.00 0.00 1.89
2265 6662 9.687210 TGTGCTAGTATGTAATTAAAGATACCG 57.313 33.333 0.00 0.00 0.00 4.02
2266 6663 9.688592 GTGCTAGTATGTAATTAAAGATACCGT 57.311 33.333 0.00 0.00 0.00 4.83
2267 6664 9.903682 TGCTAGTATGTAATTAAAGATACCGTC 57.096 33.333 0.00 0.00 0.00 4.79
2268 6665 9.903682 GCTAGTATGTAATTAAAGATACCGTCA 57.096 33.333 0.00 0.00 0.00 4.35
2274 6671 9.751542 ATGTAATTAAAGATACCGTCAGAAGAG 57.248 33.333 0.00 0.00 0.00 2.85
2275 6672 8.195436 TGTAATTAAAGATACCGTCAGAAGAGG 58.805 37.037 0.00 0.00 0.00 3.69
2276 6673 7.419711 AATTAAAGATACCGTCAGAAGAGGA 57.580 36.000 0.00 0.00 0.00 3.71
2277 6674 7.604657 ATTAAAGATACCGTCAGAAGAGGAT 57.395 36.000 0.00 0.00 0.00 3.24
2278 6675 4.927978 AAGATACCGTCAGAAGAGGATG 57.072 45.455 0.00 0.00 0.00 3.51
2279 6676 3.226777 AGATACCGTCAGAAGAGGATGG 58.773 50.000 0.00 0.00 45.16 3.51
2280 6677 1.776662 TACCGTCAGAAGAGGATGGG 58.223 55.000 5.71 0.00 44.18 4.00
2281 6678 1.144936 CCGTCAGAAGAGGATGGGC 59.855 63.158 0.00 0.00 37.71 5.36
2282 6679 1.144936 CGTCAGAAGAGGATGGGCC 59.855 63.158 0.00 0.00 0.00 5.80
2283 6680 1.617018 CGTCAGAAGAGGATGGGCCA 61.617 60.000 9.61 9.61 40.02 5.36
2284 6681 0.179936 GTCAGAAGAGGATGGGCCAG 59.820 60.000 13.78 0.00 40.02 4.85
2285 6682 1.153005 CAGAAGAGGATGGGCCAGC 60.153 63.158 14.77 14.77 40.02 4.85
2286 6683 2.203126 GAAGAGGATGGGCCAGCG 60.203 66.667 16.70 0.00 40.02 5.18
2287 6684 2.688666 AAGAGGATGGGCCAGCGA 60.689 61.111 16.70 0.00 40.02 4.93
2288 6685 2.657102 GAAGAGGATGGGCCAGCGAG 62.657 65.000 16.70 0.00 40.02 5.03
2289 6686 3.474570 GAGGATGGGCCAGCGAGT 61.475 66.667 16.70 2.21 40.02 4.18
2290 6687 3.453070 GAGGATGGGCCAGCGAGTC 62.453 68.421 16.70 8.65 40.02 3.36
2291 6688 4.554036 GGATGGGCCAGCGAGTCC 62.554 72.222 16.70 11.70 36.34 3.85
2292 6689 4.554036 GATGGGCCAGCGAGTCCC 62.554 72.222 13.78 0.00 40.47 4.46
2320 6717 3.849951 CGAGCACCGGCCCTACAT 61.850 66.667 0.00 0.00 42.56 2.29
2321 6718 2.109181 GAGCACCGGCCCTACATC 59.891 66.667 0.00 0.00 42.56 3.06
2322 6719 3.792053 GAGCACCGGCCCTACATCG 62.792 68.421 0.00 0.00 42.56 3.84
2323 6720 3.845259 GCACCGGCCCTACATCGA 61.845 66.667 0.00 0.00 0.00 3.59
2324 6721 2.417516 CACCGGCCCTACATCGAG 59.582 66.667 0.00 0.00 0.00 4.04
2325 6722 3.537874 ACCGGCCCTACATCGAGC 61.538 66.667 0.00 0.00 0.00 5.03
2326 6723 3.536917 CCGGCCCTACATCGAGCA 61.537 66.667 0.00 0.00 0.00 4.26
2327 6724 2.279517 CGGCCCTACATCGAGCAC 60.280 66.667 0.00 0.00 0.00 4.40
2328 6725 2.786495 CGGCCCTACATCGAGCACT 61.786 63.158 0.00 0.00 0.00 4.40
2329 6726 1.227380 GGCCCTACATCGAGCACTG 60.227 63.158 0.00 0.00 0.00 3.66
2330 6727 1.227380 GCCCTACATCGAGCACTGG 60.227 63.158 0.00 0.00 0.00 4.00
2331 6728 1.443407 CCCTACATCGAGCACTGGG 59.557 63.158 0.00 0.00 0.00 4.45
2332 6729 1.043116 CCCTACATCGAGCACTGGGA 61.043 60.000 7.30 0.00 35.40 4.37
2333 6730 1.043816 CCTACATCGAGCACTGGGAT 58.956 55.000 0.00 0.00 0.00 3.85
2334 6731 2.239400 CCTACATCGAGCACTGGGATA 58.761 52.381 0.00 0.00 0.00 2.59
2335 6732 2.029828 CCTACATCGAGCACTGGGATAC 60.030 54.545 0.00 0.00 0.00 2.24
2352 6749 5.606348 GGATACCATGTCCTATGAGATCC 57.394 47.826 0.00 0.00 32.85 3.36
2353 6750 5.276440 GGATACCATGTCCTATGAGATCCT 58.724 45.833 0.00 0.00 32.26 3.24
2354 6751 5.362430 GGATACCATGTCCTATGAGATCCTC 59.638 48.000 0.00 0.00 32.26 3.71
2355 6752 3.515562 ACCATGTCCTATGAGATCCTCC 58.484 50.000 0.00 0.00 0.00 4.30
2356 6753 3.116590 ACCATGTCCTATGAGATCCTCCA 60.117 47.826 0.00 0.00 0.00 3.86
2357 6754 4.102598 CCATGTCCTATGAGATCCTCCAT 58.897 47.826 0.00 0.00 0.00 3.41
2358 6755 4.535294 CCATGTCCTATGAGATCCTCCATT 59.465 45.833 0.00 0.00 0.00 3.16
2359 6756 5.338219 CCATGTCCTATGAGATCCTCCATTC 60.338 48.000 0.00 0.00 0.00 2.67
2360 6757 4.163427 TGTCCTATGAGATCCTCCATTCC 58.837 47.826 0.00 0.00 0.00 3.01
2361 6758 4.163427 GTCCTATGAGATCCTCCATTCCA 58.837 47.826 0.00 0.00 0.00 3.53
2362 6759 4.594920 GTCCTATGAGATCCTCCATTCCAA 59.405 45.833 0.00 0.00 0.00 3.53
2363 6760 4.594920 TCCTATGAGATCCTCCATTCCAAC 59.405 45.833 0.00 0.00 0.00 3.77
2364 6761 3.872459 ATGAGATCCTCCATTCCAACC 57.128 47.619 0.00 0.00 0.00 3.77
2365 6762 1.486310 TGAGATCCTCCATTCCAACCG 59.514 52.381 0.00 0.00 0.00 4.44
2366 6763 0.181350 AGATCCTCCATTCCAACCGC 59.819 55.000 0.00 0.00 0.00 5.68
2367 6764 0.107214 GATCCTCCATTCCAACCGCA 60.107 55.000 0.00 0.00 0.00 5.69
2368 6765 0.394352 ATCCTCCATTCCAACCGCAC 60.394 55.000 0.00 0.00 0.00 5.34
2369 6766 1.303236 CCTCCATTCCAACCGCACA 60.303 57.895 0.00 0.00 0.00 4.57
2370 6767 1.308069 CCTCCATTCCAACCGCACAG 61.308 60.000 0.00 0.00 0.00 3.66
2372 6769 2.568090 CATTCCAACCGCACAGGC 59.432 61.111 0.00 0.00 46.52 4.85
2373 6770 2.115052 ATTCCAACCGCACAGGCA 59.885 55.556 0.00 0.00 46.52 4.75
2374 6771 1.530419 ATTCCAACCGCACAGGCAA 60.530 52.632 0.00 0.00 46.52 4.52
2375 6772 1.526575 ATTCCAACCGCACAGGCAAG 61.527 55.000 0.00 0.00 46.52 4.01
2376 6773 2.902423 TTCCAACCGCACAGGCAAGT 62.902 55.000 0.00 0.00 46.52 3.16
2377 6774 2.332514 CAACCGCACAGGCAAGTG 59.667 61.111 5.82 5.82 46.52 3.16
2378 6775 2.906897 AACCGCACAGGCAAGTGG 60.907 61.111 11.28 7.00 46.52 4.00
2379 6776 4.189580 ACCGCACAGGCAAGTGGT 62.190 61.111 11.28 7.58 46.52 4.16
2380 6777 2.031919 CCGCACAGGCAAGTGGTA 59.968 61.111 11.28 0.00 41.24 3.25
2381 6778 2.325082 CCGCACAGGCAAGTGGTAC 61.325 63.158 11.28 0.00 41.24 3.34
2382 6779 2.667318 CGCACAGGCAAGTGGTACG 61.667 63.158 11.28 3.92 41.24 3.67
2383 6780 2.325082 GCACAGGCAAGTGGTACGG 61.325 63.158 11.28 0.00 39.87 4.02
2384 6781 1.671054 CACAGGCAAGTGGTACGGG 60.671 63.158 2.55 0.00 35.88 5.28
2385 6782 2.746277 CAGGCAAGTGGTACGGGC 60.746 66.667 0.00 0.00 0.00 6.13
2386 6783 4.029809 AGGCAAGTGGTACGGGCC 62.030 66.667 0.00 0.00 40.77 5.80
2402 6799 0.255890 GGCCCTTCACCAAGATGCTA 59.744 55.000 0.00 0.00 31.41 3.49
2407 6804 3.390639 CCCTTCACCAAGATGCTAGAGAT 59.609 47.826 0.00 0.00 0.00 2.75
2410 6807 3.646534 TCACCAAGATGCTAGAGATCCA 58.353 45.455 0.00 0.00 0.00 3.41
2412 6809 3.387374 CACCAAGATGCTAGAGATCCAGT 59.613 47.826 0.00 0.00 0.00 4.00
2416 6813 4.130719 AGATGCTAGAGATCCAGTCCAT 57.869 45.455 0.00 0.00 0.00 3.41
2420 6817 4.229639 TGCTAGAGATCCAGTCCATCATT 58.770 43.478 0.00 0.00 0.00 2.57
2425 6822 2.171237 AGATCCAGTCCATCATTCGCAA 59.829 45.455 0.00 0.00 0.00 4.85
2427 6824 1.003003 TCCAGTCCATCATTCGCAACA 59.997 47.619 0.00 0.00 0.00 3.33
2429 6826 2.159476 CCAGTCCATCATTCGCAACAAG 60.159 50.000 0.00 0.00 0.00 3.16
2430 6827 1.470098 AGTCCATCATTCGCAACAAGC 59.530 47.619 0.00 0.00 40.87 4.01
2446 6843 3.391382 GCAGGAGGCGGTAGTGGT 61.391 66.667 0.00 0.00 0.00 4.16
2453 6850 0.249398 AGGCGGTAGTGGTGATGAAC 59.751 55.000 0.00 0.00 0.00 3.18
2454 6851 0.249398 GGCGGTAGTGGTGATGAACT 59.751 55.000 0.00 0.00 0.00 3.01
2466 6863 3.314635 GGTGATGAACTTGCTGATGGATC 59.685 47.826 0.00 0.00 0.00 3.36
2467 6864 4.197750 GTGATGAACTTGCTGATGGATCT 58.802 43.478 0.00 0.00 0.00 2.75
2481 6878 1.205655 TGGATCTGGACTTCGAGCAAG 59.794 52.381 0.00 0.00 38.21 4.01
2485 6882 3.567473 GGACTTCGAGCAAGTGCC 58.433 61.111 0.00 0.00 46.10 5.01
2513 6910 4.448060 GCTCACGTGAACTTTAAGTAAGCT 59.552 41.667 20.49 0.00 37.37 3.74
2520 6917 6.736853 CGTGAACTTTAAGTAAGCTTGCATAC 59.263 38.462 17.21 3.02 37.37 2.39
2560 6957 5.130311 TGCTTTAGATAGGTTGTGCTCCATA 59.870 40.000 0.00 0.00 0.00 2.74
2561 6958 6.183361 TGCTTTAGATAGGTTGTGCTCCATAT 60.183 38.462 0.00 0.00 0.00 1.78
2562 6959 6.370166 GCTTTAGATAGGTTGTGCTCCATATC 59.630 42.308 0.00 0.00 0.00 1.63
2563 6960 6.994421 TTAGATAGGTTGTGCTCCATATCA 57.006 37.500 0.00 0.00 0.00 2.15
2564 6961 5.894298 AGATAGGTTGTGCTCCATATCAA 57.106 39.130 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.235155 TGCGCCTAGAGTTTTACATCCA 59.765 45.455 4.18 0.00 0.00 3.41
54 55 2.608090 GTGCGCCTAGAGTTTTACATCC 59.392 50.000 4.18 0.00 0.00 3.51
85 86 8.421002 GGTTACATGAAAACATATATTGCCCTT 58.579 33.333 0.00 0.00 0.00 3.95
165 176 6.362551 CACTGATACTAATTAATCACGTCCGG 59.637 42.308 0.00 0.00 0.00 5.14
180 191 8.768501 ATAATTCTGGTCTGTCACTGATACTA 57.231 34.615 0.00 0.00 0.00 1.82
181 192 7.667575 ATAATTCTGGTCTGTCACTGATACT 57.332 36.000 0.00 0.00 0.00 2.12
267 305 1.863454 CGCTAGAATGATGGTCAGCAC 59.137 52.381 0.00 0.00 0.00 4.40
290 328 4.188462 GTCCACATGATCACACCGAATAA 58.812 43.478 0.00 0.00 0.00 1.40
308 346 2.159819 GAGCAGGCAAGTCTCGTCCA 62.160 60.000 0.00 0.00 0.00 4.02
309 347 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
310 348 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
311 349 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
312 350 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
313 351 2.270527 GGGGAGCAGGCAAGTCTC 59.729 66.667 0.00 0.00 0.00 3.36
314 352 3.334054 GGGGGAGCAGGCAAGTCT 61.334 66.667 0.00 0.00 0.00 3.24
315 353 3.635268 CTGGGGGAGCAGGCAAGTC 62.635 68.421 0.00 0.00 0.00 3.01
316 354 3.655211 CTGGGGGAGCAGGCAAGT 61.655 66.667 0.00 0.00 0.00 3.16
325 363 4.785453 GGAAGCACGCTGGGGGAG 62.785 72.222 0.00 0.00 0.00 4.30
327 365 4.431131 ATGGAAGCACGCTGGGGG 62.431 66.667 0.00 0.00 0.00 5.40
328 366 2.825836 GATGGAAGCACGCTGGGG 60.826 66.667 0.00 0.00 0.00 4.96
329 367 2.825836 GGATGGAAGCACGCTGGG 60.826 66.667 0.00 0.00 0.00 4.45
330 368 3.197790 CGGATGGAAGCACGCTGG 61.198 66.667 0.00 0.00 0.00 4.85
331 369 2.434884 ACGGATGGAAGCACGCTG 60.435 61.111 0.00 0.00 0.00 5.18
332 370 2.434884 CACGGATGGAAGCACGCT 60.435 61.111 0.00 0.00 0.00 5.07
333 371 4.166011 GCACGGATGGAAGCACGC 62.166 66.667 0.00 0.00 0.00 5.34
334 372 2.434884 AGCACGGATGGAAGCACG 60.435 61.111 0.00 0.00 0.00 5.34
335 373 2.109126 GGAGCACGGATGGAAGCAC 61.109 63.158 0.00 0.00 0.00 4.40
336 374 2.268920 GGAGCACGGATGGAAGCA 59.731 61.111 0.00 0.00 0.00 3.91
337 375 2.514824 GGGAGCACGGATGGAAGC 60.515 66.667 0.00 0.00 0.00 3.86
338 376 2.202932 CGGGAGCACGGATGGAAG 60.203 66.667 0.00 0.00 0.00 3.46
352 390 1.581934 AATCATGTCACGTATGCGGG 58.418 50.000 8.39 2.85 44.11 6.13
353 391 2.607180 TCAAATCATGTCACGTATGCGG 59.393 45.455 8.39 0.00 43.45 5.69
354 392 3.923827 TCAAATCATGTCACGTATGCG 57.076 42.857 0.19 0.19 44.93 4.73
355 393 5.809464 TCAATCAAATCATGTCACGTATGC 58.191 37.500 0.00 0.00 0.00 3.14
356 394 7.750014 TGTTTCAATCAAATCATGTCACGTATG 59.250 33.333 0.00 0.00 0.00 2.39
357 395 7.815641 TGTTTCAATCAAATCATGTCACGTAT 58.184 30.769 0.00 0.00 0.00 3.06
358 396 7.195839 TGTTTCAATCAAATCATGTCACGTA 57.804 32.000 0.00 0.00 0.00 3.57
359 397 6.070897 TGTTTCAATCAAATCATGTCACGT 57.929 33.333 0.00 0.00 0.00 4.49
360 398 6.989796 TTGTTTCAATCAAATCATGTCACG 57.010 33.333 0.00 0.00 0.00 4.35
365 403 9.763465 GCCTTATTTTGTTTCAATCAAATCATG 57.237 29.630 0.00 0.00 35.25 3.07
366 404 8.949177 GGCCTTATTTTGTTTCAATCAAATCAT 58.051 29.630 0.00 0.00 35.25 2.45
367 405 7.390162 GGGCCTTATTTTGTTTCAATCAAATCA 59.610 33.333 0.84 0.00 35.25 2.57
368 406 7.412891 CGGGCCTTATTTTGTTTCAATCAAATC 60.413 37.037 0.84 0.00 35.25 2.17
369 407 6.371271 CGGGCCTTATTTTGTTTCAATCAAAT 59.629 34.615 0.84 0.00 35.25 2.32
370 408 5.698545 CGGGCCTTATTTTGTTTCAATCAAA 59.301 36.000 0.84 0.00 33.76 2.69
371 409 5.011125 TCGGGCCTTATTTTGTTTCAATCAA 59.989 36.000 0.84 0.00 0.00 2.57
372 410 4.524714 TCGGGCCTTATTTTGTTTCAATCA 59.475 37.500 0.84 0.00 0.00 2.57
373 411 4.862574 GTCGGGCCTTATTTTGTTTCAATC 59.137 41.667 0.84 0.00 0.00 2.67
374 412 4.322424 GGTCGGGCCTTATTTTGTTTCAAT 60.322 41.667 0.84 0.00 0.00 2.57
375 413 3.006003 GGTCGGGCCTTATTTTGTTTCAA 59.994 43.478 0.84 0.00 0.00 2.69
376 414 2.559231 GGTCGGGCCTTATTTTGTTTCA 59.441 45.455 0.84 0.00 0.00 2.69
377 415 2.094390 GGGTCGGGCCTTATTTTGTTTC 60.094 50.000 0.84 0.00 37.43 2.78
378 416 1.897133 GGGTCGGGCCTTATTTTGTTT 59.103 47.619 0.84 0.00 37.43 2.83
379 417 1.552578 GGGTCGGGCCTTATTTTGTT 58.447 50.000 0.84 0.00 37.43 2.83
380 418 0.323999 GGGGTCGGGCCTTATTTTGT 60.324 55.000 0.84 0.00 37.43 2.83
381 419 0.323908 TGGGGTCGGGCCTTATTTTG 60.324 55.000 0.84 0.00 37.43 2.44
382 420 0.323999 GTGGGGTCGGGCCTTATTTT 60.324 55.000 0.84 0.00 37.43 1.82
383 421 1.305287 GTGGGGTCGGGCCTTATTT 59.695 57.895 0.84 0.00 37.43 1.40
384 422 2.686572 GGTGGGGTCGGGCCTTATT 61.687 63.158 0.84 0.00 37.43 1.40
385 423 3.094498 GGTGGGGTCGGGCCTTAT 61.094 66.667 0.84 0.00 37.43 1.73
391 429 1.791695 TTTTAAGGGGTGGGGTCGGG 61.792 60.000 0.00 0.00 0.00 5.14
392 430 0.333652 ATTTTAAGGGGTGGGGTCGG 59.666 55.000 0.00 0.00 0.00 4.79
393 431 1.004979 TGATTTTAAGGGGTGGGGTCG 59.995 52.381 0.00 0.00 0.00 4.79
394 432 2.623239 CCTGATTTTAAGGGGTGGGGTC 60.623 54.545 0.00 0.00 0.00 4.46
395 433 1.361197 CCTGATTTTAAGGGGTGGGGT 59.639 52.381 0.00 0.00 0.00 4.95
396 434 2.159179 CCTGATTTTAAGGGGTGGGG 57.841 55.000 0.00 0.00 0.00 4.96
442 480 8.889717 TCATTCTACGACTGTCTTTTTCTTTTT 58.110 29.630 6.21 0.00 0.00 1.94
443 481 8.433421 TCATTCTACGACTGTCTTTTTCTTTT 57.567 30.769 6.21 0.00 0.00 2.27
444 482 8.433421 TTCATTCTACGACTGTCTTTTTCTTT 57.567 30.769 6.21 0.00 0.00 2.52
445 483 7.711339 ACTTCATTCTACGACTGTCTTTTTCTT 59.289 33.333 6.21 0.00 0.00 2.52
446 484 7.169982 CACTTCATTCTACGACTGTCTTTTTCT 59.830 37.037 6.21 0.00 0.00 2.52
447 485 7.284351 CACTTCATTCTACGACTGTCTTTTTC 58.716 38.462 6.21 0.00 0.00 2.29
448 486 6.292919 GCACTTCATTCTACGACTGTCTTTTT 60.293 38.462 6.21 0.00 0.00 1.94
449 487 5.177696 GCACTTCATTCTACGACTGTCTTTT 59.822 40.000 6.21 0.00 0.00 2.27
450 488 4.686554 GCACTTCATTCTACGACTGTCTTT 59.313 41.667 6.21 0.00 0.00 2.52
451 489 4.238514 GCACTTCATTCTACGACTGTCTT 58.761 43.478 6.21 0.00 0.00 3.01
452 490 3.670895 CGCACTTCATTCTACGACTGTCT 60.671 47.826 6.21 0.00 0.00 3.41
453 491 2.594654 CGCACTTCATTCTACGACTGTC 59.405 50.000 0.00 0.00 0.00 3.51
454 492 2.228103 TCGCACTTCATTCTACGACTGT 59.772 45.455 0.00 0.00 0.00 3.55
455 493 2.863739 TCGCACTTCATTCTACGACTG 58.136 47.619 0.00 0.00 0.00 3.51
456 494 3.057456 AGTTCGCACTTCATTCTACGACT 60.057 43.478 0.00 0.00 0.00 4.18
457 495 3.243336 AGTTCGCACTTCATTCTACGAC 58.757 45.455 0.00 0.00 0.00 4.34
458 496 3.570926 AGTTCGCACTTCATTCTACGA 57.429 42.857 0.00 0.00 0.00 3.43
459 497 3.791887 CCTAGTTCGCACTTCATTCTACG 59.208 47.826 0.00 0.00 34.06 3.51
460 498 4.995124 TCCTAGTTCGCACTTCATTCTAC 58.005 43.478 0.00 0.00 34.06 2.59
461 499 5.359860 TCATCCTAGTTCGCACTTCATTCTA 59.640 40.000 0.00 0.00 34.06 2.10
462 500 4.160439 TCATCCTAGTTCGCACTTCATTCT 59.840 41.667 0.00 0.00 34.06 2.40
463 501 4.433615 TCATCCTAGTTCGCACTTCATTC 58.566 43.478 0.00 0.00 34.06 2.67
464 502 4.160439 TCTCATCCTAGTTCGCACTTCATT 59.840 41.667 0.00 0.00 34.06 2.57
465 503 3.701542 TCTCATCCTAGTTCGCACTTCAT 59.298 43.478 0.00 0.00 34.06 2.57
466 504 3.089284 TCTCATCCTAGTTCGCACTTCA 58.911 45.455 0.00 0.00 34.06 3.02
467 505 3.701241 CTCTCATCCTAGTTCGCACTTC 58.299 50.000 0.00 0.00 34.06 3.01
468 506 2.159170 GCTCTCATCCTAGTTCGCACTT 60.159 50.000 0.00 0.00 34.06 3.16
469 507 1.407258 GCTCTCATCCTAGTTCGCACT 59.593 52.381 0.00 0.00 36.99 4.40
470 508 1.846541 GCTCTCATCCTAGTTCGCAC 58.153 55.000 0.00 0.00 0.00 5.34
471 509 0.382158 CGCTCTCATCCTAGTTCGCA 59.618 55.000 0.00 0.00 0.00 5.10
472 510 0.382515 ACGCTCTCATCCTAGTTCGC 59.617 55.000 0.00 0.00 0.00 4.70
473 511 1.671328 TCACGCTCTCATCCTAGTTCG 59.329 52.381 0.00 0.00 0.00 3.95
474 512 2.034053 CCTCACGCTCTCATCCTAGTTC 59.966 54.545 0.00 0.00 0.00 3.01
475 513 2.028130 CCTCACGCTCTCATCCTAGTT 58.972 52.381 0.00 0.00 0.00 2.24
476 514 1.213182 TCCTCACGCTCTCATCCTAGT 59.787 52.381 0.00 0.00 0.00 2.57
477 515 1.879380 CTCCTCACGCTCTCATCCTAG 59.121 57.143 0.00 0.00 0.00 3.02
478 516 1.477740 CCTCCTCACGCTCTCATCCTA 60.478 57.143 0.00 0.00 0.00 2.94
479 517 0.754957 CCTCCTCACGCTCTCATCCT 60.755 60.000 0.00 0.00 0.00 3.24
480 518 1.739049 CCTCCTCACGCTCTCATCC 59.261 63.158 0.00 0.00 0.00 3.51
481 519 0.753479 TCCCTCCTCACGCTCTCATC 60.753 60.000 0.00 0.00 0.00 2.92
482 520 0.754957 CTCCCTCCTCACGCTCTCAT 60.755 60.000 0.00 0.00 0.00 2.90
483 521 1.379176 CTCCCTCCTCACGCTCTCA 60.379 63.158 0.00 0.00 0.00 3.27
484 522 2.781158 GCTCCCTCCTCACGCTCTC 61.781 68.421 0.00 0.00 0.00 3.20
485 523 2.757917 GCTCCCTCCTCACGCTCT 60.758 66.667 0.00 0.00 0.00 4.09
486 524 3.071206 TGCTCCCTCCTCACGCTC 61.071 66.667 0.00 0.00 0.00 5.03
487 525 3.073735 CTGCTCCCTCCTCACGCT 61.074 66.667 0.00 0.00 0.00 5.07
488 526 4.154347 CCTGCTCCCTCCTCACGC 62.154 72.222 0.00 0.00 0.00 5.34
489 527 4.154347 GCCTGCTCCCTCCTCACG 62.154 72.222 0.00 0.00 0.00 4.35
490 528 2.533974 CTTGCCTGCTCCCTCCTCAC 62.534 65.000 0.00 0.00 0.00 3.51
491 529 2.203983 TTGCCTGCTCCCTCCTCA 60.204 61.111 0.00 0.00 0.00 3.86
492 530 2.588989 CTTGCCTGCTCCCTCCTC 59.411 66.667 0.00 0.00 0.00 3.71
493 531 3.726144 GCTTGCCTGCTCCCTCCT 61.726 66.667 0.00 0.00 0.00 3.69
494 532 4.811364 GGCTTGCCTGCTCCCTCC 62.811 72.222 4.11 0.00 0.00 4.30
498 536 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
499 537 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
500 538 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
502 540 4.473520 ACGGATCCGGCTTGCCTG 62.474 66.667 35.87 7.52 44.69 4.85
503 541 4.473520 CACGGATCCGGCTTGCCT 62.474 66.667 35.87 12.31 44.69 4.75
504 542 4.467084 TCACGGATCCGGCTTGCC 62.467 66.667 35.87 0.75 44.69 4.52
505 543 3.195698 GTCACGGATCCGGCTTGC 61.196 66.667 35.87 17.84 44.69 4.01
506 544 2.511600 GGTCACGGATCCGGCTTG 60.512 66.667 35.87 25.18 44.69 4.01
507 545 2.367202 ATGGTCACGGATCCGGCTT 61.367 57.895 35.87 14.70 44.69 4.35
508 546 2.764128 ATGGTCACGGATCCGGCT 60.764 61.111 35.87 15.50 44.69 5.52
509 547 2.588877 CATGGTCACGGATCCGGC 60.589 66.667 35.87 24.31 44.69 6.13
510 548 1.521457 CACATGGTCACGGATCCGG 60.521 63.158 35.87 24.50 44.69 5.14
511 549 1.521457 CCACATGGTCACGGATCCG 60.521 63.158 32.20 32.20 46.03 4.18
512 550 1.819632 GCCACATGGTCACGGATCC 60.820 63.158 0.00 0.00 37.57 3.36
513 551 1.078497 TGCCACATGGTCACGGATC 60.078 57.895 0.00 0.00 37.57 3.36
514 552 1.377202 GTGCCACATGGTCACGGAT 60.377 57.895 0.00 0.00 37.57 4.18
515 553 2.031919 GTGCCACATGGTCACGGA 59.968 61.111 0.00 0.00 37.57 4.69
518 556 2.977456 TGCGTGCCACATGGTCAC 60.977 61.111 12.68 12.68 38.20 3.67
519 557 2.977456 GTGCGTGCCACATGGTCA 60.977 61.111 0.00 0.00 44.06 4.02
520 558 4.088762 CGTGCGTGCCACATGGTC 62.089 66.667 0.00 0.00 44.91 4.02
521 559 4.927782 ACGTGCGTGCCACATGGT 62.928 61.111 0.00 0.00 44.91 3.55
522 560 4.088762 GACGTGCGTGCCACATGG 62.089 66.667 0.67 0.00 44.91 3.66
523 561 4.088762 GGACGTGCGTGCCACATG 62.089 66.667 0.67 0.00 44.91 3.21
545 583 1.959042 ATGCATGATCTCAACGGGAC 58.041 50.000 0.00 0.00 0.00 4.46
640 1551 2.107552 CAGGGTGGGTCTGGAGTTTTTA 59.892 50.000 0.00 0.00 0.00 1.52
643 1554 0.401395 TCAGGGTGGGTCTGGAGTTT 60.401 55.000 0.00 0.00 33.36 2.66
661 1582 6.654161 AGCTGGCAGTTAGAATGATATGATTC 59.346 38.462 17.16 6.79 33.21 2.52
662 1583 6.540995 AGCTGGCAGTTAGAATGATATGATT 58.459 36.000 17.16 0.00 0.00 2.57
675 1599 3.826157 AGTTTTTGCATAGCTGGCAGTTA 59.174 39.130 17.16 15.32 43.05 2.24
680 1604 3.582714 AAGAGTTTTTGCATAGCTGGC 57.417 42.857 0.00 0.00 0.00 4.85
689 1613 2.989166 GGCATGCAGTAAGAGTTTTTGC 59.011 45.455 21.36 0.00 35.42 3.68
729 1653 5.353678 CAGATCCTTTCTCTCCATGAAACAC 59.646 44.000 0.00 0.00 29.93 3.32
776 1740 3.367806 CCACGAGATGTTGACTCTCATGT 60.368 47.826 0.00 0.00 39.29 3.21
777 1741 3.119352 TCCACGAGATGTTGACTCTCATG 60.119 47.826 0.00 0.00 39.29 3.07
781 1749 3.511540 TCAATCCACGAGATGTTGACTCT 59.488 43.478 0.00 0.00 34.56 3.24
782 1750 3.849911 TCAATCCACGAGATGTTGACTC 58.150 45.455 0.00 0.00 34.56 3.36
835 1803 6.609533 CGTACTAGTCTGTCACTGTGTTTAT 58.390 40.000 7.79 0.00 36.43 1.40
841 1809 1.811359 GGCGTACTAGTCTGTCACTGT 59.189 52.381 0.00 0.00 36.43 3.55
861 1829 1.683025 TGCTGCCCATGTTCCATGG 60.683 57.895 14.93 14.93 38.88 3.66
862 1830 1.514087 GTGCTGCCCATGTTCCATG 59.486 57.895 0.00 0.00 0.00 3.66
863 1831 2.048023 CGTGCTGCCCATGTTCCAT 61.048 57.895 0.00 0.00 0.00 3.41
864 1832 2.118233 TACGTGCTGCCCATGTTCCA 62.118 55.000 0.00 0.00 40.77 3.53
947 1915 3.092301 TGAGGTACAGAGGTGTGATGAG 58.908 50.000 0.00 0.00 37.52 2.90
960 1928 2.011947 CGTCGACTATGGTGAGGTACA 58.988 52.381 14.70 0.00 0.00 2.90
1005 1982 3.993376 TAATCGGCGGACGTGGTGC 62.993 63.158 7.21 0.00 44.69 5.01
1065 2042 2.649034 GGCGTCGTCTCCACTTCA 59.351 61.111 0.00 0.00 0.00 3.02
1175 2152 1.456518 GGGTCCCCGTAGACTACCC 60.457 68.421 7.05 0.00 42.87 3.69
1176 2153 1.456518 GGGGTCCCCGTAGACTACC 60.457 68.421 12.53 0.00 36.95 3.18
1177 2154 4.266962 GGGGTCCCCGTAGACTAC 57.733 66.667 12.53 2.24 36.95 2.73
1186 2163 3.732849 CAGCTTGGAGGGGTCCCC 61.733 72.222 20.85 20.85 45.90 4.81
1187 2164 3.732849 CCAGCTTGGAGGGGTCCC 61.733 72.222 0.00 0.00 40.96 4.46
1239 2216 4.148825 ATGCACTCCGGGTCGCTC 62.149 66.667 0.00 0.00 0.00 5.03
1266 2243 3.649277 CTTCTGGGCCTCACCGACG 62.649 68.421 4.53 0.00 40.62 5.12
1267 2244 2.113243 AACTTCTGGGCCTCACCGAC 62.113 60.000 4.53 0.00 40.62 4.79
1271 2248 2.035442 GCGAACTTCTGGGCCTCAC 61.035 63.158 4.53 0.00 0.00 3.51
1278 2255 2.031682 CCACTTCTTTGCGAACTTCTGG 60.032 50.000 0.00 0.00 0.00 3.86
1285 2262 4.492604 CCCCCACTTCTTTGCGAA 57.507 55.556 0.00 0.00 0.00 4.70
1299 2276 1.895231 GACGGTGTTGTTGACCCCC 60.895 63.158 0.00 0.00 0.00 5.40
1303 2280 1.556484 CGTCGACGGTGTTGTTGAC 59.444 57.895 29.70 4.53 45.75 3.18
1325 2302 1.296392 CACTGGCGGAACATCTCCA 59.704 57.895 0.00 0.00 45.74 3.86
1345 2322 0.463295 CAGCTGGTGGTAGGCATCTG 60.463 60.000 5.57 0.00 0.00 2.90
1372 2349 4.215399 TGCATCTTTCTAACCTGGTTTTCG 59.785 41.667 18.58 7.09 0.00 3.46
1373 2350 5.705609 TGCATCTTTCTAACCTGGTTTTC 57.294 39.130 18.58 0.00 0.00 2.29
1384 2364 7.066887 TGGCGAAGAAAATAATGCATCTTTCTA 59.933 33.333 22.04 10.61 37.18 2.10
1453 2463 3.791245 TCCTGCAAATTCACCAAACAAC 58.209 40.909 0.00 0.00 0.00 3.32
1461 2471 8.814235 CAATATTTTCTGATCCTGCAAATTCAC 58.186 33.333 0.00 0.00 0.00 3.18
1466 2476 7.479352 TTCCAATATTTTCTGATCCTGCAAA 57.521 32.000 0.00 0.00 0.00 3.68
1478 2488 3.130633 GGGCCGCATTTCCAATATTTTC 58.869 45.455 0.00 0.00 0.00 2.29
1483 2493 2.158534 AGTATGGGCCGCATTTCCAATA 60.159 45.455 11.36 0.00 33.90 1.90
1494 2504 1.443872 GATCGCGTAGTATGGGCCG 60.444 63.158 5.77 0.00 0.00 6.13
1495 2505 1.080025 GGATCGCGTAGTATGGGCC 60.080 63.158 5.77 0.00 0.00 5.80
1500 2510 2.223971 CCACCAAAGGATCGCGTAGTAT 60.224 50.000 5.77 0.00 0.00 2.12
1508 2518 1.470098 CTGAAAGCCACCAAAGGATCG 59.530 52.381 0.00 0.00 0.00 3.69
1510 2520 2.978156 TCTGAAAGCCACCAAAGGAT 57.022 45.000 0.00 0.00 0.00 3.24
1521 2531 4.873259 GGAAGACAAGTAGGATCTGAAAGC 59.127 45.833 0.00 0.00 0.00 3.51
1564 2574 4.106925 CCTCCAGCACTCCAGGCC 62.107 72.222 0.00 0.00 0.00 5.19
1565 2575 4.106925 CCCTCCAGCACTCCAGGC 62.107 72.222 0.00 0.00 0.00 4.85
1569 2579 3.706373 TTCGCCCTCCAGCACTCC 61.706 66.667 0.00 0.00 0.00 3.85
1579 2589 4.600692 AAAAATAAGCAAAGTTCGCCCT 57.399 36.364 0.00 0.00 0.00 5.19
1659 2672 8.012809 GTGTTTATCGTGTTATTTGATGTGTGA 58.987 33.333 0.00 0.00 0.00 3.58
1660 2673 7.006122 CGTGTTTATCGTGTTATTTGATGTGTG 59.994 37.037 0.00 0.00 0.00 3.82
1661 2674 7.012943 CGTGTTTATCGTGTTATTTGATGTGT 58.987 34.615 0.00 0.00 0.00 3.72
1672 2685 0.111001 GTGCGCGTGTTTATCGTGTT 60.111 50.000 8.43 0.00 40.28 3.32
1679 2692 1.130749 AGTTTTGTGTGCGCGTGTTTA 59.869 42.857 8.43 0.00 0.00 2.01
1687 2700 3.822594 TGGCTATTAGTTTTGTGTGCG 57.177 42.857 0.00 0.00 0.00 5.34
1713 2726 3.738791 GGAAAACAAAAGGCACAATACGG 59.261 43.478 0.00 0.00 0.00 4.02
1717 2730 5.357742 AAGAGGAAAACAAAAGGCACAAT 57.642 34.783 0.00 0.00 0.00 2.71
1719 2732 4.817318 AAAGAGGAAAACAAAAGGCACA 57.183 36.364 0.00 0.00 0.00 4.57
1745 2758 7.334421 GTGAGCACAGAGAAAACCAGAATATAA 59.666 37.037 0.00 0.00 0.00 0.98
1749 2762 3.817647 GTGAGCACAGAGAAAACCAGAAT 59.182 43.478 0.00 0.00 0.00 2.40
1750 2763 3.206150 GTGAGCACAGAGAAAACCAGAA 58.794 45.455 0.00 0.00 0.00 3.02
1751 2764 2.170397 TGTGAGCACAGAGAAAACCAGA 59.830 45.455 0.00 0.00 36.21 3.86
1752 2765 2.564771 TGTGAGCACAGAGAAAACCAG 58.435 47.619 0.00 0.00 36.21 4.00
1753 2766 2.708216 TGTGAGCACAGAGAAAACCA 57.292 45.000 0.00 0.00 36.21 3.67
1766 4263 6.035650 TGCGTGAGTTTATTATAACTGTGAGC 59.964 38.462 0.00 0.00 38.43 4.26
1772 4269 5.815740 CCAGGTGCGTGAGTTTATTATAACT 59.184 40.000 0.00 0.00 40.92 2.24
1777 4274 2.352388 GCCAGGTGCGTGAGTTTATTA 58.648 47.619 0.00 0.00 0.00 0.98
1977 6286 0.668096 CGTGGGTGCTAGCGTGTTTA 60.668 55.000 10.77 0.00 0.00 2.01
2045 6354 6.018669 GTCTCGGATGTTAGCTTAATCCAAAG 60.019 42.308 17.40 14.20 39.98 2.77
2071 6468 8.093307 AGATCAAACATCGACTAATATCAGCAT 58.907 33.333 0.00 0.00 0.00 3.79
2077 6474 9.197694 GCTACAAGATCAAACATCGACTAATAT 57.802 33.333 0.00 0.00 0.00 1.28
2091 6488 3.686241 GTGTGCTCATGCTACAAGATCAA 59.314 43.478 0.00 0.00 40.48 2.57
2096 6493 3.002042 GCTATGTGTGCTCATGCTACAAG 59.998 47.826 0.00 0.00 39.17 3.16
2100 6497 2.093553 TGTGCTATGTGTGCTCATGCTA 60.094 45.455 0.00 0.00 40.48 3.49
2107 6504 4.132336 CCAGATTATGTGCTATGTGTGCT 58.868 43.478 0.00 0.00 0.00 4.40
2108 6505 3.879295 ACCAGATTATGTGCTATGTGTGC 59.121 43.478 0.00 0.00 0.00 4.57
2117 6514 5.049828 GGCCAAATTTACCAGATTATGTGC 58.950 41.667 0.00 0.00 0.00 4.57
2129 6526 6.530567 GCTGAATTTTAACGGCCAAATTTAC 58.469 36.000 11.58 3.05 33.62 2.01
2141 6538 5.659440 TCTTGATGGGGCTGAATTTTAAC 57.341 39.130 0.00 0.00 0.00 2.01
2142 6539 5.067674 CGATCTTGATGGGGCTGAATTTTAA 59.932 40.000 0.00 0.00 0.00 1.52
2143 6540 4.580167 CGATCTTGATGGGGCTGAATTTTA 59.420 41.667 0.00 0.00 0.00 1.52
2144 6541 3.382546 CGATCTTGATGGGGCTGAATTTT 59.617 43.478 0.00 0.00 0.00 1.82
2145 6542 2.954318 CGATCTTGATGGGGCTGAATTT 59.046 45.455 0.00 0.00 0.00 1.82
2146 6543 2.579873 CGATCTTGATGGGGCTGAATT 58.420 47.619 0.00 0.00 0.00 2.17
2147 6544 1.202855 CCGATCTTGATGGGGCTGAAT 60.203 52.381 4.07 0.00 0.00 2.57
2148 6545 0.181114 CCGATCTTGATGGGGCTGAA 59.819 55.000 4.07 0.00 0.00 3.02
2149 6546 1.699054 CCCGATCTTGATGGGGCTGA 61.699 60.000 15.91 0.00 39.39 4.26
2150 6547 1.228063 CCCGATCTTGATGGGGCTG 60.228 63.158 15.91 0.00 39.39 4.85
2151 6548 1.384502 TCCCGATCTTGATGGGGCT 60.385 57.895 21.25 0.00 43.50 5.19
2152 6549 1.072159 CTCCCGATCTTGATGGGGC 59.928 63.158 21.25 0.00 43.50 5.80
2153 6550 0.764369 TCCTCCCGATCTTGATGGGG 60.764 60.000 20.36 20.36 43.50 4.96
2154 6551 0.683973 CTCCTCCCGATCTTGATGGG 59.316 60.000 4.91 4.91 44.75 4.00
2155 6552 0.034616 GCTCCTCCCGATCTTGATGG 59.965 60.000 0.00 0.00 0.00 3.51
2156 6553 0.755079 TGCTCCTCCCGATCTTGATG 59.245 55.000 0.00 0.00 0.00 3.07
2157 6554 1.727062 ATGCTCCTCCCGATCTTGAT 58.273 50.000 0.00 0.00 0.00 2.57
2158 6555 1.964223 GTATGCTCCTCCCGATCTTGA 59.036 52.381 0.00 0.00 0.00 3.02
2159 6556 1.688735 TGTATGCTCCTCCCGATCTTG 59.311 52.381 0.00 0.00 0.00 3.02
2160 6557 2.088104 TGTATGCTCCTCCCGATCTT 57.912 50.000 0.00 0.00 0.00 2.40
2161 6558 2.317371 ATGTATGCTCCTCCCGATCT 57.683 50.000 0.00 0.00 0.00 2.75
2162 6559 3.330267 GAAATGTATGCTCCTCCCGATC 58.670 50.000 0.00 0.00 0.00 3.69
2163 6560 2.289072 CGAAATGTATGCTCCTCCCGAT 60.289 50.000 0.00 0.00 0.00 4.18
2164 6561 1.068588 CGAAATGTATGCTCCTCCCGA 59.931 52.381 0.00 0.00 0.00 5.14
2165 6562 1.068588 TCGAAATGTATGCTCCTCCCG 59.931 52.381 0.00 0.00 0.00 5.14
2166 6563 2.103263 ACTCGAAATGTATGCTCCTCCC 59.897 50.000 0.00 0.00 0.00 4.30
2167 6564 3.460857 ACTCGAAATGTATGCTCCTCC 57.539 47.619 0.00 0.00 0.00 4.30
2168 6565 5.803020 AAAACTCGAAATGTATGCTCCTC 57.197 39.130 0.00 0.00 0.00 3.71
2169 6566 5.294552 GCTAAAACTCGAAATGTATGCTCCT 59.705 40.000 0.00 0.00 0.00 3.69
2170 6567 5.064707 TGCTAAAACTCGAAATGTATGCTCC 59.935 40.000 0.00 0.00 0.00 4.70
2171 6568 6.106877 TGCTAAAACTCGAAATGTATGCTC 57.893 37.500 0.00 0.00 0.00 4.26
2172 6569 6.683974 ATGCTAAAACTCGAAATGTATGCT 57.316 33.333 0.00 0.00 0.00 3.79
2173 6570 8.070171 ACATATGCTAAAACTCGAAATGTATGC 58.930 33.333 1.58 0.00 0.00 3.14
2174 6571 9.373750 CACATATGCTAAAACTCGAAATGTATG 57.626 33.333 1.58 0.00 0.00 2.39
2175 6572 8.559536 CCACATATGCTAAAACTCGAAATGTAT 58.440 33.333 1.58 0.00 0.00 2.29
2176 6573 7.551262 ACCACATATGCTAAAACTCGAAATGTA 59.449 33.333 1.58 0.00 0.00 2.29
2177 6574 6.374333 ACCACATATGCTAAAACTCGAAATGT 59.626 34.615 1.58 0.00 0.00 2.71
2178 6575 6.688385 CACCACATATGCTAAAACTCGAAATG 59.312 38.462 1.58 0.00 0.00 2.32
2179 6576 6.183360 CCACCACATATGCTAAAACTCGAAAT 60.183 38.462 1.58 0.00 0.00 2.17
2180 6577 5.123186 CCACCACATATGCTAAAACTCGAAA 59.877 40.000 1.58 0.00 0.00 3.46
2181 6578 4.634004 CCACCACATATGCTAAAACTCGAA 59.366 41.667 1.58 0.00 0.00 3.71
2182 6579 4.081365 TCCACCACATATGCTAAAACTCGA 60.081 41.667 1.58 0.00 0.00 4.04
2183 6580 4.188462 TCCACCACATATGCTAAAACTCG 58.812 43.478 1.58 0.00 0.00 4.18
2184 6581 5.186198 ACTCCACCACATATGCTAAAACTC 58.814 41.667 1.58 0.00 0.00 3.01
2185 6582 5.179452 ACTCCACCACATATGCTAAAACT 57.821 39.130 1.58 0.00 0.00 2.66
2186 6583 6.995511 TTACTCCACCACATATGCTAAAAC 57.004 37.500 1.58 0.00 0.00 2.43
2187 6584 8.710239 TCTATTACTCCACCACATATGCTAAAA 58.290 33.333 1.58 0.00 0.00 1.52
2188 6585 8.257602 TCTATTACTCCACCACATATGCTAAA 57.742 34.615 1.58 0.00 0.00 1.85
2189 6586 7.849322 TCTATTACTCCACCACATATGCTAA 57.151 36.000 1.58 0.00 0.00 3.09
2190 6587 9.715119 ATATCTATTACTCCACCACATATGCTA 57.285 33.333 1.58 0.00 0.00 3.49
2191 6588 6.942163 ATCTATTACTCCACCACATATGCT 57.058 37.500 1.58 0.00 0.00 3.79
2192 6589 8.700051 AGATATCTATTACTCCACCACATATGC 58.300 37.037 2.53 0.00 0.00 3.14
2196 6593 9.693739 CTAGAGATATCTATTACTCCACCACAT 57.306 37.037 4.89 0.00 0.00 3.21
2197 6594 8.891501 TCTAGAGATATCTATTACTCCACCACA 58.108 37.037 4.89 0.00 0.00 4.17
2198 6595 9.391006 CTCTAGAGATATCTATTACTCCACCAC 57.609 40.741 15.05 0.00 0.00 4.16
2199 6596 9.340223 TCTCTAGAGATATCTATTACTCCACCA 57.660 37.037 18.76 0.00 31.41 4.17
2200 6597 9.609346 GTCTCTAGAGATATCTATTACTCCACC 57.391 40.741 24.88 2.80 39.97 4.61
2203 6600 9.745880 CGAGTCTCTAGAGATATCTATTACTCC 57.254 40.741 24.88 7.76 39.97 3.85
2211 6608 8.590204 TGACATAACGAGTCTCTAGAGATATCT 58.410 37.037 24.88 17.13 39.97 1.98
2212 6609 8.766000 TGACATAACGAGTCTCTAGAGATATC 57.234 38.462 24.88 22.16 39.97 1.63
2213 6610 9.733556 AATGACATAACGAGTCTCTAGAGATAT 57.266 33.333 24.88 16.64 39.97 1.63
2214 6611 8.994170 CAATGACATAACGAGTCTCTAGAGATA 58.006 37.037 24.88 13.29 39.97 1.98
2215 6612 7.500892 ACAATGACATAACGAGTCTCTAGAGAT 59.499 37.037 24.88 13.92 39.97 2.75
2216 6613 6.824196 ACAATGACATAACGAGTCTCTAGAGA 59.176 38.462 18.76 18.76 36.94 3.10
2217 6614 6.909895 CACAATGACATAACGAGTCTCTAGAG 59.090 42.308 13.98 13.98 36.94 2.43
2218 6615 6.678164 GCACAATGACATAACGAGTCTCTAGA 60.678 42.308 0.00 0.00 36.94 2.43
2219 6616 5.457148 GCACAATGACATAACGAGTCTCTAG 59.543 44.000 0.00 0.00 36.94 2.43
2220 6617 5.125578 AGCACAATGACATAACGAGTCTCTA 59.874 40.000 0.00 0.00 36.94 2.43
2221 6618 4.081972 AGCACAATGACATAACGAGTCTCT 60.082 41.667 0.00 0.00 36.94 3.10
2222 6619 4.177026 AGCACAATGACATAACGAGTCTC 58.823 43.478 0.00 0.00 36.94 3.36
2223 6620 4.193826 AGCACAATGACATAACGAGTCT 57.806 40.909 0.00 0.00 36.94 3.24
2224 6621 5.103000 ACTAGCACAATGACATAACGAGTC 58.897 41.667 0.00 0.00 36.55 3.36
2225 6622 5.073311 ACTAGCACAATGACATAACGAGT 57.927 39.130 0.00 0.00 0.00 4.18
2226 6623 6.697455 ACATACTAGCACAATGACATAACGAG 59.303 38.462 0.00 0.00 0.00 4.18
2227 6624 6.569780 ACATACTAGCACAATGACATAACGA 58.430 36.000 0.00 0.00 0.00 3.85
2228 6625 6.828502 ACATACTAGCACAATGACATAACG 57.171 37.500 0.00 0.00 0.00 3.18
2239 6636 9.687210 CGGTATCTTTAATTACATACTAGCACA 57.313 33.333 0.00 0.00 0.00 4.57
2240 6637 9.688592 ACGGTATCTTTAATTACATACTAGCAC 57.311 33.333 0.00 0.00 0.00 4.40
2241 6638 9.903682 GACGGTATCTTTAATTACATACTAGCA 57.096 33.333 0.00 0.00 0.00 3.49
2242 6639 9.903682 TGACGGTATCTTTAATTACATACTAGC 57.096 33.333 0.00 0.00 0.00 3.42
2248 6645 9.751542 CTCTTCTGACGGTATCTTTAATTACAT 57.248 33.333 0.00 0.00 0.00 2.29
2249 6646 8.195436 CCTCTTCTGACGGTATCTTTAATTACA 58.805 37.037 0.00 0.00 0.00 2.41
2250 6647 8.411683 TCCTCTTCTGACGGTATCTTTAATTAC 58.588 37.037 0.00 0.00 0.00 1.89
2251 6648 8.529424 TCCTCTTCTGACGGTATCTTTAATTA 57.471 34.615 0.00 0.00 0.00 1.40
2252 6649 7.419711 TCCTCTTCTGACGGTATCTTTAATT 57.580 36.000 0.00 0.00 0.00 1.40
2253 6650 7.437748 CATCCTCTTCTGACGGTATCTTTAAT 58.562 38.462 0.00 0.00 0.00 1.40
2254 6651 6.183360 CCATCCTCTTCTGACGGTATCTTTAA 60.183 42.308 0.00 0.00 0.00 1.52
2255 6652 5.302059 CCATCCTCTTCTGACGGTATCTTTA 59.698 44.000 0.00 0.00 0.00 1.85
2256 6653 4.100189 CCATCCTCTTCTGACGGTATCTTT 59.900 45.833 0.00 0.00 0.00 2.52
2257 6654 3.639094 CCATCCTCTTCTGACGGTATCTT 59.361 47.826 0.00 0.00 0.00 2.40
2258 6655 3.226777 CCATCCTCTTCTGACGGTATCT 58.773 50.000 0.00 0.00 0.00 1.98
2259 6656 2.297597 CCCATCCTCTTCTGACGGTATC 59.702 54.545 0.00 0.00 0.00 2.24
2260 6657 2.320781 CCCATCCTCTTCTGACGGTAT 58.679 52.381 0.00 0.00 0.00 2.73
2261 6658 1.776662 CCCATCCTCTTCTGACGGTA 58.223 55.000 0.00 0.00 0.00 4.02
2262 6659 1.617947 GCCCATCCTCTTCTGACGGT 61.618 60.000 0.00 0.00 0.00 4.83
2263 6660 1.144936 GCCCATCCTCTTCTGACGG 59.855 63.158 0.00 0.00 0.00 4.79
2264 6661 1.144936 GGCCCATCCTCTTCTGACG 59.855 63.158 0.00 0.00 0.00 4.35
2265 6662 0.179936 CTGGCCCATCCTCTTCTGAC 59.820 60.000 0.00 0.00 35.26 3.51
2266 6663 1.630126 GCTGGCCCATCCTCTTCTGA 61.630 60.000 0.00 0.00 35.26 3.27
2267 6664 1.153005 GCTGGCCCATCCTCTTCTG 60.153 63.158 0.00 0.00 35.26 3.02
2268 6665 2.739996 CGCTGGCCCATCCTCTTCT 61.740 63.158 0.00 0.00 35.26 2.85
2269 6666 2.203126 CGCTGGCCCATCCTCTTC 60.203 66.667 0.00 0.00 35.26 2.87
2270 6667 2.688666 TCGCTGGCCCATCCTCTT 60.689 61.111 0.00 0.00 35.26 2.85
2271 6668 3.160047 CTCGCTGGCCCATCCTCT 61.160 66.667 0.00 0.00 35.26 3.69
2272 6669 3.453070 GACTCGCTGGCCCATCCTC 62.453 68.421 0.00 0.00 35.26 3.71
2273 6670 3.474570 GACTCGCTGGCCCATCCT 61.475 66.667 0.00 0.00 35.26 3.24
2274 6671 4.554036 GGACTCGCTGGCCCATCC 62.554 72.222 0.00 0.00 38.13 3.51
2303 6700 3.792053 GATGTAGGGCCGGTGCTCG 62.792 68.421 1.90 0.00 45.20 5.03
2304 6701 2.109181 GATGTAGGGCCGGTGCTC 59.891 66.667 1.90 0.00 38.71 4.26
2305 6702 3.849951 CGATGTAGGGCCGGTGCT 61.850 66.667 1.90 0.00 37.74 4.40
2306 6703 3.792053 CTCGATGTAGGGCCGGTGC 62.792 68.421 1.90 0.00 0.00 5.01
2307 6704 2.417516 CTCGATGTAGGGCCGGTG 59.582 66.667 1.90 0.00 0.00 4.94
2308 6705 3.537874 GCTCGATGTAGGGCCGGT 61.538 66.667 1.90 0.00 0.00 5.28
2309 6706 3.536917 TGCTCGATGTAGGGCCGG 61.537 66.667 0.00 0.00 36.62 6.13
2310 6707 2.279517 GTGCTCGATGTAGGGCCG 60.280 66.667 0.00 0.00 36.62 6.13
2311 6708 1.227380 CAGTGCTCGATGTAGGGCC 60.227 63.158 0.00 0.00 36.62 5.80
2312 6709 1.227380 CCAGTGCTCGATGTAGGGC 60.227 63.158 0.00 0.00 38.31 5.19
2313 6710 1.043116 TCCCAGTGCTCGATGTAGGG 61.043 60.000 0.00 0.00 36.15 3.53
2314 6711 1.043816 ATCCCAGTGCTCGATGTAGG 58.956 55.000 0.00 0.00 0.00 3.18
2315 6712 2.029828 GGTATCCCAGTGCTCGATGTAG 60.030 54.545 0.00 0.00 0.00 2.74
2316 6713 1.961394 GGTATCCCAGTGCTCGATGTA 59.039 52.381 0.00 0.00 0.00 2.29
2317 6714 0.753262 GGTATCCCAGTGCTCGATGT 59.247 55.000 0.00 0.00 0.00 3.06
2318 6715 0.752658 TGGTATCCCAGTGCTCGATG 59.247 55.000 0.00 0.00 35.17 3.84
2319 6716 1.345741 CATGGTATCCCAGTGCTCGAT 59.654 52.381 0.00 0.00 46.15 3.59
2320 6717 0.752658 CATGGTATCCCAGTGCTCGA 59.247 55.000 0.00 0.00 46.15 4.04
2321 6718 0.465705 ACATGGTATCCCAGTGCTCG 59.534 55.000 0.00 0.00 46.15 5.03
2322 6719 1.202698 GGACATGGTATCCCAGTGCTC 60.203 57.143 0.00 0.00 46.15 4.26
2323 6720 0.839946 GGACATGGTATCCCAGTGCT 59.160 55.000 0.00 0.00 46.15 4.40
2324 6721 0.839946 AGGACATGGTATCCCAGTGC 59.160 55.000 0.00 0.00 46.15 4.40
2325 6722 3.903714 TCATAGGACATGGTATCCCAGTG 59.096 47.826 0.00 0.00 46.15 3.66
2326 6723 4.140686 TCTCATAGGACATGGTATCCCAGT 60.141 45.833 0.00 0.00 46.15 4.00
2327 6724 4.420206 TCTCATAGGACATGGTATCCCAG 58.580 47.826 0.00 0.00 46.15 4.45
2329 6726 4.407296 GGATCTCATAGGACATGGTATCCC 59.593 50.000 0.00 0.00 36.86 3.85
2330 6727 5.276440 AGGATCTCATAGGACATGGTATCC 58.724 45.833 0.00 0.00 34.15 2.59
2331 6728 5.362430 GGAGGATCTCATAGGACATGGTATC 59.638 48.000 0.00 0.00 33.73 2.24
2332 6729 5.222631 TGGAGGATCTCATAGGACATGGTAT 60.223 44.000 0.00 0.00 33.73 2.73
2333 6730 4.107961 TGGAGGATCTCATAGGACATGGTA 59.892 45.833 0.00 0.00 33.73 3.25
2334 6731 3.116590 TGGAGGATCTCATAGGACATGGT 60.117 47.826 0.00 0.00 33.73 3.55
2335 6732 3.514539 TGGAGGATCTCATAGGACATGG 58.485 50.000 0.00 0.00 33.73 3.66
2336 6733 5.338219 GGAATGGAGGATCTCATAGGACATG 60.338 48.000 0.00 0.00 33.73 3.21
2337 6734 4.782156 GGAATGGAGGATCTCATAGGACAT 59.218 45.833 0.00 0.00 33.73 3.06
2338 6735 4.163427 GGAATGGAGGATCTCATAGGACA 58.837 47.826 0.00 0.00 33.73 4.02
2339 6736 4.163427 TGGAATGGAGGATCTCATAGGAC 58.837 47.826 0.00 0.00 33.73 3.85
2340 6737 4.492182 TGGAATGGAGGATCTCATAGGA 57.508 45.455 0.00 0.00 33.73 2.94
2341 6738 4.263243 GGTTGGAATGGAGGATCTCATAGG 60.263 50.000 0.00 0.00 33.73 2.57
2342 6739 4.562347 CGGTTGGAATGGAGGATCTCATAG 60.562 50.000 0.00 0.00 33.73 2.23
2343 6740 3.324846 CGGTTGGAATGGAGGATCTCATA 59.675 47.826 0.00 0.00 33.73 2.15
2344 6741 2.105477 CGGTTGGAATGGAGGATCTCAT 59.895 50.000 0.00 0.00 33.73 2.90
2345 6742 1.486310 CGGTTGGAATGGAGGATCTCA 59.514 52.381 0.00 0.00 33.73 3.27
2346 6743 1.811941 GCGGTTGGAATGGAGGATCTC 60.812 57.143 0.00 0.00 33.73 2.75
2347 6744 0.181350 GCGGTTGGAATGGAGGATCT 59.819 55.000 0.00 0.00 33.73 2.75
2348 6745 0.107214 TGCGGTTGGAATGGAGGATC 60.107 55.000 0.00 0.00 0.00 3.36
2349 6746 0.394352 GTGCGGTTGGAATGGAGGAT 60.394 55.000 0.00 0.00 0.00 3.24
2350 6747 1.002624 GTGCGGTTGGAATGGAGGA 60.003 57.895 0.00 0.00 0.00 3.71
2351 6748 1.303236 TGTGCGGTTGGAATGGAGG 60.303 57.895 0.00 0.00 0.00 4.30
2352 6749 1.308069 CCTGTGCGGTTGGAATGGAG 61.308 60.000 0.00 0.00 0.00 3.86
2353 6750 1.303236 CCTGTGCGGTTGGAATGGA 60.303 57.895 0.00 0.00 0.00 3.41
2354 6751 2.993471 GCCTGTGCGGTTGGAATGG 61.993 63.158 0.00 0.00 34.25 3.16
2355 6752 1.804396 TTGCCTGTGCGGTTGGAATG 61.804 55.000 0.00 0.00 41.78 2.67
2356 6753 1.526575 CTTGCCTGTGCGGTTGGAAT 61.527 55.000 0.00 0.00 41.78 3.01
2357 6754 2.124109 TTGCCTGTGCGGTTGGAA 60.124 55.556 0.00 0.00 41.78 3.53
2358 6755 2.594303 CTTGCCTGTGCGGTTGGA 60.594 61.111 0.00 0.00 41.78 3.53
2359 6756 2.906897 ACTTGCCTGTGCGGTTGG 60.907 61.111 0.00 0.00 41.78 3.77
2360 6757 2.332514 CACTTGCCTGTGCGGTTG 59.667 61.111 0.00 0.00 41.78 3.77
2361 6758 2.332312 TACCACTTGCCTGTGCGGTT 62.332 55.000 1.20 0.00 41.78 4.44
2362 6759 2.813726 TACCACTTGCCTGTGCGGT 61.814 57.895 1.20 0.00 41.78 5.68
2363 6760 2.031919 TACCACTTGCCTGTGCGG 59.968 61.111 1.20 0.00 41.78 5.69
2364 6761 2.667318 CGTACCACTTGCCTGTGCG 61.667 63.158 1.20 0.00 41.78 5.34
2365 6762 2.325082 CCGTACCACTTGCCTGTGC 61.325 63.158 1.20 0.00 36.68 4.57
2366 6763 1.671054 CCCGTACCACTTGCCTGTG 60.671 63.158 0.00 0.00 37.66 3.66
2367 6764 2.747686 CCCGTACCACTTGCCTGT 59.252 61.111 0.00 0.00 0.00 4.00
2368 6765 2.746277 GCCCGTACCACTTGCCTG 60.746 66.667 0.00 0.00 0.00 4.85
2369 6766 4.029809 GGCCCGTACCACTTGCCT 62.030 66.667 0.00 0.00 39.05 4.75
2371 6768 3.562732 AAGGGCCCGTACCACTTGC 62.563 63.158 18.44 0.00 0.00 4.01
2372 6769 1.376812 GAAGGGCCCGTACCACTTG 60.377 63.158 18.44 0.00 0.00 3.16
2373 6770 1.844289 TGAAGGGCCCGTACCACTT 60.844 57.895 18.44 2.21 0.00 3.16
2374 6771 2.203877 TGAAGGGCCCGTACCACT 60.204 61.111 18.44 0.00 0.00 4.00
2375 6772 2.046604 GTGAAGGGCCCGTACCAC 60.047 66.667 18.44 18.34 0.00 4.16
2376 6773 3.324108 GGTGAAGGGCCCGTACCA 61.324 66.667 29.28 18.47 0.00 3.25
2377 6774 2.814913 CTTGGTGAAGGGCCCGTACC 62.815 65.000 28.21 28.21 0.00 3.34
2378 6775 1.376812 CTTGGTGAAGGGCCCGTAC 60.377 63.158 18.44 16.51 0.00 3.67
2379 6776 0.912487 ATCTTGGTGAAGGGCCCGTA 60.912 55.000 18.44 3.41 0.00 4.02
2380 6777 2.231380 ATCTTGGTGAAGGGCCCGT 61.231 57.895 18.44 15.01 0.00 5.28
2381 6778 1.750399 CATCTTGGTGAAGGGCCCG 60.750 63.158 18.44 0.00 0.00 6.13
2382 6779 2.054453 GCATCTTGGTGAAGGGCCC 61.054 63.158 16.46 16.46 0.00 5.80
2383 6780 0.255890 TAGCATCTTGGTGAAGGGCC 59.744 55.000 0.00 0.00 33.10 5.80
2384 6781 1.210478 TCTAGCATCTTGGTGAAGGGC 59.790 52.381 0.00 0.00 32.94 5.19
2385 6782 2.768527 TCTCTAGCATCTTGGTGAAGGG 59.231 50.000 0.00 0.00 0.00 3.95
2386 6783 4.502950 GGATCTCTAGCATCTTGGTGAAGG 60.503 50.000 0.00 0.00 0.00 3.46
2402 6799 2.036992 GCGAATGATGGACTGGATCTCT 59.963 50.000 0.00 0.00 0.00 3.10
2407 6804 1.003003 TGTTGCGAATGATGGACTGGA 59.997 47.619 0.00 0.00 0.00 3.86
2410 6807 1.470098 GCTTGTTGCGAATGATGGACT 59.530 47.619 0.00 0.00 0.00 3.85
2412 6809 1.469703 CTGCTTGTTGCGAATGATGGA 59.530 47.619 0.00 0.00 46.63 3.41
2416 6813 1.159285 CTCCTGCTTGTTGCGAATGA 58.841 50.000 0.00 0.00 46.63 2.57
2420 6817 2.669569 GCCTCCTGCTTGTTGCGA 60.670 61.111 0.00 0.00 46.63 5.10
2425 6822 1.913762 ACTACCGCCTCCTGCTTGT 60.914 57.895 0.00 0.00 38.05 3.16
2427 6824 2.660064 CCACTACCGCCTCCTGCTT 61.660 63.158 0.00 0.00 38.05 3.91
2429 6826 3.391382 ACCACTACCGCCTCCTGC 61.391 66.667 0.00 0.00 0.00 4.85
2430 6827 1.330655 ATCACCACTACCGCCTCCTG 61.331 60.000 0.00 0.00 0.00 3.86
2439 6836 3.664107 TCAGCAAGTTCATCACCACTAC 58.336 45.455 0.00 0.00 0.00 2.73
2441 6838 2.936919 TCAGCAAGTTCATCACCACT 57.063 45.000 0.00 0.00 0.00 4.00
2443 6840 2.040145 TCCATCAGCAAGTTCATCACCA 59.960 45.455 0.00 0.00 0.00 4.17
2446 6843 4.196971 CAGATCCATCAGCAAGTTCATCA 58.803 43.478 0.00 0.00 0.00 3.07
2453 6850 3.204526 GAAGTCCAGATCCATCAGCAAG 58.795 50.000 0.00 0.00 0.00 4.01
2454 6851 2.419159 CGAAGTCCAGATCCATCAGCAA 60.419 50.000 0.00 0.00 0.00 3.91
2466 6863 1.294659 GGCACTTGCTCGAAGTCCAG 61.295 60.000 0.38 0.00 43.52 3.86
2467 6864 1.301716 GGCACTTGCTCGAAGTCCA 60.302 57.895 0.38 0.00 43.52 4.02
2485 6882 1.308998 AAAGTTCACGTGAGCCTTGG 58.691 50.000 26.19 0.00 0.00 3.61
2520 6917 1.617322 AGCATTATCCAGGCAGCATG 58.383 50.000 0.00 0.00 40.87 4.06
2527 6924 7.173907 CACAACCTATCTAAAGCATTATCCAGG 59.826 40.741 0.00 0.00 0.00 4.45
2531 6928 7.095017 GGAGCACAACCTATCTAAAGCATTATC 60.095 40.741 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.