Multiple sequence alignment - TraesCS5A01G551400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G551400 chr5A 100.000 5073 0 0 1 5073 704947026 704952098 0.000000e+00 9369.0
1 TraesCS5A01G551400 chr5A 86.186 970 119 10 1044 2013 704975657 704974703 0.000000e+00 1035.0
2 TraesCS5A01G551400 chr5A 87.190 484 54 6 3454 3936 704973254 704972778 1.240000e-150 544.0
3 TraesCS5A01G551400 chr5A 85.316 538 65 12 1051 1581 705142810 705143340 1.240000e-150 544.0
4 TraesCS5A01G551400 chr5A 88.525 427 47 2 2896 3321 705145965 705146390 2.710000e-142 516.0
5 TraesCS5A01G551400 chr5A 79.340 576 83 21 3476 4018 705146563 705147135 6.200000e-99 372.0
6 TraesCS5A01G551400 chr5A 88.889 63 7 0 896 958 705142670 705142732 1.510000e-10 78.7
7 TraesCS5A01G551400 chr5A 95.000 40 2 0 2135 2174 704949121 704949160 4.240000e-06 63.9
8 TraesCS5A01G551400 chr5A 95.000 40 2 0 2096 2135 704949160 704949199 4.240000e-06 63.9
9 TraesCS5A01G551400 chrUn 94.554 3507 126 21 673 4125 108755052 108751557 0.000000e+00 5358.0
10 TraesCS5A01G551400 chrUn 83.597 1012 140 17 1022 2017 108618358 108619359 0.000000e+00 926.0
11 TraesCS5A01G551400 chrUn 83.828 977 126 18 1044 2013 108745883 108746834 0.000000e+00 900.0
12 TraesCS5A01G551400 chrUn 87.057 564 62 9 23 583 108755788 108755233 1.200000e-175 627.0
13 TraesCS5A01G551400 chrUn 83.894 565 72 13 1025 1581 108800957 108800404 5.820000e-144 521.0
14 TraesCS5A01G551400 chrUn 89.136 405 44 0 2174 2578 108619468 108619872 5.860000e-139 505.0
15 TraesCS5A01G551400 chrUn 87.224 407 50 2 1615 2020 108800304 108799899 3.580000e-126 462.0
16 TraesCS5A01G551400 chrUn 85.337 416 53 3 2913 3321 108619991 108620405 1.690000e-114 424.0
17 TraesCS5A01G551400 chrUn 82.851 484 72 8 3454 3936 108748337 108748810 1.690000e-114 424.0
18 TraesCS5A01G551400 chrUn 86.340 388 50 2 2195 2582 108795770 108795386 2.180000e-113 420.0
19 TraesCS5A01G551400 chrUn 84.010 419 53 11 2177 2582 108747117 108747534 1.710000e-104 390.0
20 TraesCS5A01G551400 chrUn 80.531 452 56 18 4238 4676 108751463 108751031 8.200000e-83 318.0
21 TraesCS5A01G551400 chrUn 78.156 499 90 13 3471 3968 108794641 108794161 2.970000e-77 300.0
22 TraesCS5A01G551400 chrUn 75.321 389 43 25 4703 5072 108750937 108750583 2.460000e-28 137.0
23 TraesCS5A01G551400 chrUn 86.170 94 13 0 4979 5072 108801141 108801048 8.990000e-18 102.0
24 TraesCS5A01G551400 chrUn 84.536 97 15 0 4976 5072 108618157 108618253 4.180000e-16 97.1
25 TraesCS5A01G551400 chr4B 84.816 1034 81 28 3398 4412 665299193 665300169 0.000000e+00 970.0
26 TraesCS5A01G551400 chr4B 83.745 972 127 20 1044 2013 665302771 665301829 0.000000e+00 891.0
27 TraesCS5A01G551400 chr4B 86.279 481 54 9 1 473 665298718 665299194 3.500000e-141 512.0
28 TraesCS5A01G551400 chr4B 82.630 403 52 14 2195 2582 665301525 665301126 1.750000e-89 340.0
29 TraesCS5A01G551400 chr4D 83.426 1074 139 23 2918 3976 499458510 499457461 0.000000e+00 961.0
30 TraesCS5A01G551400 chr4D 82.271 1004 119 34 1036 2020 499460456 499459493 0.000000e+00 813.0
31 TraesCS5A01G551400 chr4D 85.784 408 46 7 2184 2582 499459031 499458627 6.070000e-114 422.0
32 TraesCS5A01G551400 chr7D 82.500 960 141 17 1079 2032 80715944 80715006 0.000000e+00 817.0
33 TraesCS5A01G551400 chr7D 87.775 409 47 2 2174 2582 80714828 80714423 4.600000e-130 475.0
34 TraesCS5A01G551400 chr7B 82.286 971 138 19 1079 2032 28062765 28061812 0.000000e+00 809.0
35 TraesCS5A01G551400 chr7B 85.616 292 37 5 2292 2582 28061151 28060864 8.250000e-78 302.0
36 TraesCS5A01G551400 chr7A 81.994 983 139 24 1069 2032 83299395 83298432 0.000000e+00 800.0
37 TraesCS5A01G551400 chr7A 87.531 409 48 3 2174 2582 83298253 83297848 2.140000e-128 470.0
38 TraesCS5A01G551400 chr7A 81.589 516 77 10 3481 3978 58235495 58236010 1.310000e-110 411.0
39 TraesCS5A01G551400 chr2D 81.754 707 109 18 884 1581 584757796 584758491 1.580000e-159 573.0
40 TraesCS5A01G551400 chr2D 89.607 433 40 5 2896 3326 584768170 584768599 3.450000e-151 545.0
41 TraesCS5A01G551400 chr2D 84.819 415 63 0 1603 2017 584758555 584758969 7.860000e-113 418.0
42 TraesCS5A01G551400 chr2D 84.561 421 50 8 2174 2582 584759223 584759640 2.200000e-108 403.0
43 TraesCS5A01G551400 chr2D 79.962 524 78 15 3476 3975 584768768 584769288 1.340000e-95 361.0
44 TraesCS5A01G551400 chr2B 79.797 787 129 25 811 1581 704762802 704763574 3.450000e-151 545.0
45 TraesCS5A01G551400 chr2B 79.886 527 79 15 3476 3978 704766248 704766771 1.340000e-95 361.0
46 TraesCS5A01G551400 chr6A 85.680 412 57 2 2915 3325 585972874 585973284 2.810000e-117 433.0
47 TraesCS5A01G551400 chr6A 76.938 503 70 24 3467 3964 585973423 585973884 1.410000e-60 244.0
48 TraesCS5A01G551400 chr3B 85.464 399 57 1 2915 3313 818316001 818316398 1.020000e-111 414.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G551400 chr5A 704947026 704952098 5072 False 3165.600000 9369 96.666667 1 5073 3 chr5A.!!$F1 5072
1 TraesCS5A01G551400 chr5A 704972778 704975657 2879 True 789.500000 1035 86.688000 1044 3936 2 chr5A.!!$R1 2892
2 TraesCS5A01G551400 chr5A 705142670 705147135 4465 False 377.675000 544 85.517500 896 4018 4 chr5A.!!$F2 3122
3 TraesCS5A01G551400 chrUn 108750583 108755788 5205 True 1610.000000 5358 84.365750 23 5072 4 chrUn.!!$R1 5049
4 TraesCS5A01G551400 chrUn 108745883 108748810 2927 False 571.333333 900 83.563000 1044 3936 3 chrUn.!!$F2 2892
5 TraesCS5A01G551400 chrUn 108618157 108620405 2248 False 488.025000 926 85.651500 1022 5072 4 chrUn.!!$F1 4050
6 TraesCS5A01G551400 chrUn 108799899 108801141 1242 True 361.666667 521 85.762667 1025 5072 3 chrUn.!!$R3 4047
7 TraesCS5A01G551400 chrUn 108794161 108795770 1609 True 360.000000 420 82.248000 2195 3968 2 chrUn.!!$R2 1773
8 TraesCS5A01G551400 chr4B 665298718 665300169 1451 False 741.000000 970 85.547500 1 4412 2 chr4B.!!$F1 4411
9 TraesCS5A01G551400 chr4B 665301126 665302771 1645 True 615.500000 891 83.187500 1044 2582 2 chr4B.!!$R1 1538
10 TraesCS5A01G551400 chr4D 499457461 499460456 2995 True 732.000000 961 83.827000 1036 3976 3 chr4D.!!$R1 2940
11 TraesCS5A01G551400 chr7D 80714423 80715944 1521 True 646.000000 817 85.137500 1079 2582 2 chr7D.!!$R1 1503
12 TraesCS5A01G551400 chr7B 28060864 28062765 1901 True 555.500000 809 83.951000 1079 2582 2 chr7B.!!$R1 1503
13 TraesCS5A01G551400 chr7A 83297848 83299395 1547 True 635.000000 800 84.762500 1069 2582 2 chr7A.!!$R1 1513
14 TraesCS5A01G551400 chr7A 58235495 58236010 515 False 411.000000 411 81.589000 3481 3978 1 chr7A.!!$F1 497
15 TraesCS5A01G551400 chr2D 584757796 584759640 1844 False 464.666667 573 83.711333 884 2582 3 chr2D.!!$F1 1698
16 TraesCS5A01G551400 chr2D 584768170 584769288 1118 False 453.000000 545 84.784500 2896 3975 2 chr2D.!!$F2 1079
17 TraesCS5A01G551400 chr2B 704762802 704766771 3969 False 453.000000 545 79.841500 811 3978 2 chr2B.!!$F1 3167
18 TraesCS5A01G551400 chr6A 585972874 585973884 1010 False 338.500000 433 81.309000 2915 3964 2 chr6A.!!$F1 1049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 820 0.037882 TGCCAGACAGCGAGAGAAAG 60.038 55.000 0.0 0.0 34.65 2.62 F
1733 2008 0.188587 TGGAGCGAGACCCAGGATAT 59.811 55.000 0.0 0.0 0.00 1.63 F
2140 2906 1.398390 GGACAATCAACATCGGTGCTC 59.602 52.381 0.0 0.0 0.00 4.26 F
3432 6033 0.801251 GCAGCAAGAACAAGAGCGAT 59.199 50.000 0.0 0.0 0.00 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2678 3900 0.669077 CTCGTCGGGGAGGTTGATAG 59.331 60.000 0.0 0.0 0.00 2.08 R
3351 5895 0.678048 GGCACTTAGGGAGGCACTTG 60.678 60.000 0.0 0.0 41.55 3.16 R
3993 6673 1.141881 ATTGCGTGCTCCCGAGTAG 59.858 57.895 0.0 0.0 0.00 2.57 R
4900 7736 0.035056 CGCTTTGATTGGTCCCTCCT 60.035 55.000 0.0 0.0 37.07 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.877637 TACATGTCTTGCAACGCTGT 58.122 45.000 0.00 0.00 0.00 4.40
35 36 6.526325 GCAACGCTGTTGAATATGTATTTCAA 59.474 34.615 20.50 0.00 0.00 2.69
52 53 3.077229 TCAACATGAAACTTGGCAACG 57.923 42.857 0.00 0.00 42.51 4.10
99 100 9.814899 TTTTTGCAGAATGTTCTCAAGATTTAA 57.185 25.926 0.00 0.00 39.31 1.52
177 179 4.385358 AATTTCCATACGCCCAACATTC 57.615 40.909 0.00 0.00 0.00 2.67
222 224 5.052693 AGGCTGCCAAGACATCATAAATA 57.947 39.130 22.65 0.00 31.58 1.40
226 228 5.297776 GCTGCCAAGACATCATAAATACACT 59.702 40.000 0.00 0.00 0.00 3.55
228 230 7.519008 GCTGCCAAGACATCATAAATACACTAC 60.519 40.741 0.00 0.00 0.00 2.73
303 305 0.588730 CGACAGTGGTTGCAACAACG 60.589 55.000 27.29 23.39 37.91 4.10
306 308 1.333619 ACAGTGGTTGCAACAACGATC 59.666 47.619 27.29 12.09 37.91 3.69
308 310 2.020720 AGTGGTTGCAACAACGATCAA 58.979 42.857 27.29 3.02 37.91 2.57
328 330 1.527380 GGCACAAACCGTCCCTTGA 60.527 57.895 0.00 0.00 0.00 3.02
338 340 1.333619 CCGTCCCTTGACAACACAAAG 59.666 52.381 0.00 0.00 41.85 2.77
344 346 2.539547 CCTTGACAACACAAAGACTGCG 60.540 50.000 0.00 0.00 0.00 5.18
351 353 2.213499 ACACAAAGACTGCGAGAAAGG 58.787 47.619 0.00 0.00 0.00 3.11
356 358 3.477210 AAGACTGCGAGAAAGGTTCTT 57.523 42.857 0.00 0.00 40.87 2.52
372 374 5.774498 GGTTCTTCAAAACCAATGTCTCT 57.226 39.130 1.00 0.00 46.62 3.10
373 375 6.877611 GGTTCTTCAAAACCAATGTCTCTA 57.122 37.500 1.00 0.00 46.62 2.43
374 376 6.903419 GGTTCTTCAAAACCAATGTCTCTAG 58.097 40.000 1.00 0.00 46.62 2.43
386 388 7.327214 ACCAATGTCTCTAGAGAAAGAATGAC 58.673 38.462 23.96 10.39 39.48 3.06
388 390 4.987832 TGTCTCTAGAGAAAGAATGACGC 58.012 43.478 23.96 8.21 39.48 5.19
416 418 1.002257 ACCATCGCTGCATCCAACA 60.002 52.632 0.00 0.00 0.00 3.33
423 425 1.787012 GCTGCATCCAACAACCAAAG 58.213 50.000 0.00 0.00 0.00 2.77
427 429 1.686052 GCATCCAACAACCAAAGGTCA 59.314 47.619 0.00 0.00 33.12 4.02
428 430 2.102252 GCATCCAACAACCAAAGGTCAA 59.898 45.455 0.00 0.00 33.12 3.18
429 431 3.431486 GCATCCAACAACCAAAGGTCAAA 60.431 43.478 0.00 0.00 33.12 2.69
431 433 4.664150 TCCAACAACCAAAGGTCAAATC 57.336 40.909 0.00 0.00 33.12 2.17
432 434 4.026744 TCCAACAACCAAAGGTCAAATCA 58.973 39.130 0.00 0.00 33.12 2.57
433 435 4.653341 TCCAACAACCAAAGGTCAAATCAT 59.347 37.500 0.00 0.00 33.12 2.45
436 438 3.966665 ACAACCAAAGGTCAAATCATGGT 59.033 39.130 0.00 0.00 42.70 3.55
468 470 0.107410 ACCCAAGTGCGAACAACTCA 60.107 50.000 0.00 0.00 0.00 3.41
478 480 2.857152 GCGAACAACTCAAAACAATGCA 59.143 40.909 0.00 0.00 0.00 3.96
479 481 3.490526 GCGAACAACTCAAAACAATGCAT 59.509 39.130 0.00 0.00 0.00 3.96
480 482 4.606673 GCGAACAACTCAAAACAATGCATG 60.607 41.667 0.00 0.00 0.00 4.06
481 483 4.606673 CGAACAACTCAAAACAATGCATGC 60.607 41.667 11.82 11.82 0.00 4.06
498 500 3.186909 CATGCATGCCTTCAACAAGATG 58.813 45.455 14.93 4.05 0.00 2.90
499 501 1.546923 TGCATGCCTTCAACAAGATGG 59.453 47.619 16.68 0.00 42.88 3.51
504 506 2.838386 CCTTCAACAAGATGGCATCG 57.162 50.000 21.01 10.96 35.09 3.84
505 507 2.086869 CCTTCAACAAGATGGCATCGT 58.913 47.619 21.01 15.88 35.09 3.73
506 508 2.159476 CCTTCAACAAGATGGCATCGTG 60.159 50.000 32.45 32.45 43.14 4.35
507 509 0.804364 TCAACAAGATGGCATCGTGC 59.196 50.000 33.51 9.32 41.56 5.34
540 544 8.911662 CACAATTGCTAGGTACAACAAATTAAC 58.088 33.333 5.05 0.00 0.00 2.01
542 546 9.638239 CAATTGCTAGGTACAACAAATTAACAT 57.362 29.630 0.00 0.00 0.00 2.71
573 577 2.487265 GGTTCTCACCTGGAGCAAGAAA 60.487 50.000 0.00 0.00 43.70 2.52
577 581 3.008330 CTCACCTGGAGCAAGAAATCAG 58.992 50.000 0.00 0.00 36.69 2.90
578 582 2.639347 TCACCTGGAGCAAGAAATCAGA 59.361 45.455 0.00 0.00 0.00 3.27
583 587 5.663106 ACCTGGAGCAAGAAATCAGATACTA 59.337 40.000 0.00 0.00 0.00 1.82
587 647 7.946207 TGGAGCAAGAAATCAGATACTACTAG 58.054 38.462 0.00 0.00 0.00 2.57
603 663 1.067821 ACTAGAGTAGCGCCATCAAGC 59.932 52.381 2.29 0.00 0.00 4.01
619 679 0.600255 AAGCCAACTTGTCGTCTCCG 60.600 55.000 0.00 0.00 33.84 4.63
633 693 4.704833 TCCGCTTGCTGACCTGGC 62.705 66.667 0.00 0.00 0.00 4.85
649 710 1.215647 GGCACGACAGTACTCCTGG 59.784 63.158 0.00 0.00 46.06 4.45
654 715 3.842869 GACAGTACTCCTGGCCTTG 57.157 57.895 3.32 0.00 44.14 3.61
669 730 3.989104 CTTGACCAGGACGACACTT 57.011 52.632 0.00 0.00 0.00 3.16
688 784 1.566404 TGGTCGCGTGCAAGTATATG 58.434 50.000 5.77 0.00 0.00 1.78
703 799 2.916702 ATATGTCCAGCTCGATTGCA 57.083 45.000 0.00 0.00 34.99 4.08
708 804 1.065273 CCAGCTCGATTGCAATGCC 59.935 57.895 18.59 1.94 34.99 4.40
724 820 0.037882 TGCCAGACAGCGAGAGAAAG 60.038 55.000 0.00 0.00 34.65 2.62
731 827 2.230266 GACAGCGAGAGAAAGGAGAAGT 59.770 50.000 0.00 0.00 0.00 3.01
755 851 5.837437 AGAGAGCAAGGTTTGATACGATAG 58.163 41.667 0.00 0.00 46.19 2.08
797 893 0.896923 GCATCCCATTCTTTGGTGCA 59.103 50.000 3.20 0.00 43.61 4.57
809 905 1.565390 TTGGTGCATGGGGAGAGAGG 61.565 60.000 0.00 0.00 0.00 3.69
850 946 2.879646 CGTGGAGAGGGACATAGAGTAC 59.120 54.545 0.00 0.00 0.00 2.73
882 978 9.519191 AATGGATATATTTAGCAAGCATGTGTA 57.481 29.630 0.00 0.00 0.00 2.90
965 1066 1.410850 ATGATTCCCGGAGCCGACAT 61.411 55.000 11.05 5.34 42.83 3.06
966 1067 1.301009 GATTCCCGGAGCCGACATC 60.301 63.158 11.05 5.02 42.83 3.06
967 1068 2.028125 GATTCCCGGAGCCGACATCA 62.028 60.000 11.05 0.00 42.83 3.07
969 1070 3.461773 CCCGGAGCCGACATCACT 61.462 66.667 11.05 0.00 42.83 3.41
970 1071 2.125326 CCCGGAGCCGACATCACTA 61.125 63.158 11.05 0.00 42.83 2.74
971 1072 1.464376 CCCGGAGCCGACATCACTAT 61.464 60.000 11.05 0.00 42.83 2.12
972 1073 1.244816 CCGGAGCCGACATCACTATA 58.755 55.000 11.05 0.00 42.83 1.31
973 1074 1.819288 CCGGAGCCGACATCACTATAT 59.181 52.381 11.05 0.00 42.83 0.86
974 1075 3.014623 CCGGAGCCGACATCACTATATA 58.985 50.000 11.05 0.00 42.83 0.86
975 1076 3.442625 CCGGAGCCGACATCACTATATAA 59.557 47.826 11.05 0.00 42.83 0.98
976 1077 4.098044 CCGGAGCCGACATCACTATATAAT 59.902 45.833 11.05 0.00 42.83 1.28
978 1079 5.393135 CGGAGCCGACATCACTATATAATGT 60.393 44.000 2.00 0.00 42.83 2.71
980 1081 7.468768 CGGAGCCGACATCACTATATAATGTAT 60.469 40.741 2.00 0.00 42.83 2.29
982 1083 9.885934 GAGCCGACATCACTATATAATGTATAG 57.114 37.037 2.99 2.99 33.91 1.31
983 1084 9.628500 AGCCGACATCACTATATAATGTATAGA 57.372 33.333 10.40 0.00 33.91 1.98
1033 1158 4.101119 ACTGGGAAGTGGTATACATAGTGC 59.899 45.833 5.01 0.00 0.00 4.40
1529 1702 3.312890 CTGGGTCCATCTATGTCTCCTT 58.687 50.000 0.00 0.00 0.00 3.36
1730 2005 2.363018 CTGGAGCGAGACCCAGGA 60.363 66.667 0.00 0.00 44.68 3.86
1732 2007 0.468214 CTGGAGCGAGACCCAGGATA 60.468 60.000 0.00 0.00 44.68 2.59
1733 2008 0.188587 TGGAGCGAGACCCAGGATAT 59.811 55.000 0.00 0.00 0.00 1.63
1935 2210 1.525535 GCTTGGCCTCATGATCGCT 60.526 57.895 3.32 0.00 0.00 4.93
1938 2213 2.775890 CTTGGCCTCATGATCGCTTAT 58.224 47.619 3.32 0.00 0.00 1.73
2064 2348 3.550275 CGATCGAAGAATGGCGTAAGAAA 59.450 43.478 10.26 0.00 43.58 2.52
2140 2906 1.398390 GGACAATCAACATCGGTGCTC 59.602 52.381 0.00 0.00 0.00 4.26
2388 3568 4.224274 TTCGTGGCGTCCGTGGTT 62.224 61.111 0.00 0.00 0.00 3.67
2678 3900 2.659610 AGGAGACGCACCTCAAGC 59.340 61.111 4.95 0.00 34.94 4.01
2775 4027 3.379445 GAGTCGTCCCGGCAAGGA 61.379 66.667 0.00 0.00 45.00 3.36
2776 4028 3.358076 GAGTCGTCCCGGCAAGGAG 62.358 68.421 0.00 0.00 45.00 3.69
2780 4032 2.646175 CGTCCCGGCAAGGAGAAGA 61.646 63.158 0.00 0.00 45.00 2.87
2881 5365 3.423154 CGGCACAAGTTCCTCCGC 61.423 66.667 0.00 0.00 33.36 5.54
2882 5366 2.032681 GGCACAAGTTCCTCCGCT 59.967 61.111 0.00 0.00 0.00 5.52
3374 5969 0.909623 TGCCTCCCTAAGTGCCTAAC 59.090 55.000 0.00 0.00 0.00 2.34
3432 6033 0.801251 GCAGCAAGAACAAGAGCGAT 59.199 50.000 0.00 0.00 0.00 4.58
3433 6034 1.202009 GCAGCAAGAACAAGAGCGATC 60.202 52.381 0.00 0.00 0.00 3.69
3942 6613 4.893601 TTCAACGTCGTGCGGGCA 62.894 61.111 0.00 0.00 46.52 5.36
4120 6802 9.974980 GTTTACATTCCCTTGATTTGAAGTTTA 57.025 29.630 0.00 0.00 0.00 2.01
4149 6867 2.479049 CGAGCATTCCCTTGATTTGCAG 60.479 50.000 0.00 0.00 34.25 4.41
4155 6873 0.963962 CCCTTGATTTGCAGTGCTGT 59.036 50.000 17.60 1.64 0.00 4.40
4169 6887 1.461127 GTGCTGTTGATCGGACAACTC 59.539 52.381 19.84 14.23 46.79 3.01
4170 6888 1.069978 TGCTGTTGATCGGACAACTCA 59.930 47.619 19.84 15.83 46.79 3.41
4180 6898 7.107639 TGATCGGACAACTCATGTAAGATTA 57.892 36.000 0.00 0.00 44.12 1.75
4184 6902 8.786826 TCGGACAACTCATGTAAGATTATTTT 57.213 30.769 0.00 0.00 44.12 1.82
4185 6903 9.878667 TCGGACAACTCATGTAAGATTATTTTA 57.121 29.630 0.00 0.00 44.12 1.52
4221 6939 2.031120 TGCTGGGAAACTTGTTTCTGG 58.969 47.619 20.92 13.84 0.00 3.86
4230 6948 6.106003 GGAAACTTGTTTCTGGTTTTGATGT 58.894 36.000 20.92 0.00 34.00 3.06
4268 6986 9.864034 GAACTACGTGTATATTTTCATTCATGG 57.136 33.333 0.00 0.00 0.00 3.66
4282 7001 8.655651 TTTCATTCATGGAAAAACAAACTACC 57.344 30.769 0.00 0.00 31.72 3.18
4283 7002 7.595819 TCATTCATGGAAAAACAAACTACCT 57.404 32.000 0.00 0.00 0.00 3.08
4284 7003 7.432869 TCATTCATGGAAAAACAAACTACCTG 58.567 34.615 0.00 0.00 0.00 4.00
4285 7004 6.783708 TTCATGGAAAAACAAACTACCTGT 57.216 33.333 0.00 0.00 0.00 4.00
4286 7005 6.142818 TCATGGAAAAACAAACTACCTGTG 57.857 37.500 0.00 0.00 0.00 3.66
4292 7011 7.122948 TGGAAAAACAAACTACCTGTGTACATT 59.877 33.333 0.00 0.00 0.00 2.71
4358 7077 1.943340 GAGGGGATTCTGTTTCGATGC 59.057 52.381 0.00 0.00 0.00 3.91
4371 7090 5.927030 TGTTTCGATGCTTTTGTGTATCTC 58.073 37.500 0.00 0.00 0.00 2.75
4416 7136 1.135139 CGAGTCACCTTGATCGGATGT 59.865 52.381 0.00 0.00 0.00 3.06
4461 7183 4.404715 GGTATTCTGGTAGCAGAGTTACCA 59.595 45.833 34.06 20.48 46.23 3.25
4494 7216 3.684305 TGCACGAAACAGATGATCGATTT 59.316 39.130 15.75 0.00 39.73 2.17
4498 7220 5.900242 CACGAAACAGATGATCGATTTGATG 59.100 40.000 15.75 0.00 37.47 3.07
4502 7224 7.517893 CGAAACAGATGATCGATTTGATGACAT 60.518 37.037 0.00 0.00 37.47 3.06
4508 7230 8.127327 AGATGATCGATTTGATGACATTTCAAC 58.873 33.333 0.00 0.00 37.47 3.18
4509 7231 6.250089 TGATCGATTTGATGACATTTCAACG 58.750 36.000 0.00 0.00 37.47 4.10
4532 7254 9.838339 AACGGATGAAAAGATAGTCAATTATCT 57.162 29.630 0.00 0.00 41.09 1.98
4540 7262 8.674263 AAAGATAGTCAATTATCTGCAGGAAG 57.326 34.615 15.13 0.00 39.66 3.46
4543 7280 8.584157 AGATAGTCAATTATCTGCAGGAAGTAG 58.416 37.037 15.13 0.76 38.60 2.57
4552 7289 2.102252 CTGCAGGAAGTAGGAGATCCAC 59.898 54.545 5.57 0.00 38.89 4.02
4553 7290 2.111384 GCAGGAAGTAGGAGATCCACA 58.889 52.381 0.92 0.00 38.89 4.17
4556 7293 4.565652 GCAGGAAGTAGGAGATCCACAAAA 60.566 45.833 0.92 0.00 38.89 2.44
4558 7295 5.645497 CAGGAAGTAGGAGATCCACAAAAAG 59.355 44.000 0.92 0.00 38.89 2.27
4564 7301 4.327680 AGGAGATCCACAAAAAGTAGCAC 58.672 43.478 0.92 0.00 38.89 4.40
4566 7303 3.421844 AGATCCACAAAAAGTAGCACCC 58.578 45.455 0.00 0.00 0.00 4.61
4570 7307 2.554032 CCACAAAAAGTAGCACCCAGAG 59.446 50.000 0.00 0.00 0.00 3.35
4576 7313 5.630415 AAAAGTAGCACCCAGAGCATATA 57.370 39.130 0.00 0.00 0.00 0.86
4578 7315 6.935240 AAAGTAGCACCCAGAGCATATATA 57.065 37.500 0.00 0.00 0.00 0.86
4582 7319 8.187913 AGTAGCACCCAGAGCATATATATATG 57.812 38.462 23.19 23.19 42.30 1.78
4583 7320 7.786943 AGTAGCACCCAGAGCATATATATATGT 59.213 37.037 26.27 16.65 41.63 2.29
4584 7321 7.443302 AGCACCCAGAGCATATATATATGTT 57.557 36.000 26.27 22.75 41.63 2.71
4585 7322 7.865820 AGCACCCAGAGCATATATATATGTTT 58.134 34.615 26.27 18.04 41.63 2.83
4586 7323 8.992349 AGCACCCAGAGCATATATATATGTTTA 58.008 33.333 26.27 0.00 41.63 2.01
4587 7324 9.784531 GCACCCAGAGCATATATATATGTTTAT 57.215 33.333 26.27 14.83 41.63 1.40
4605 7342 0.695803 ATAGAAGGAGCCCACCCAGG 60.696 60.000 0.00 0.00 37.03 4.45
4618 7355 0.907704 ACCCAGGTGATACGCCAGAA 60.908 55.000 4.21 0.00 36.32 3.02
4627 7364 3.312697 GTGATACGCCAGAAATCCTTTCC 59.687 47.826 0.00 0.00 40.54 3.13
4630 7367 1.376609 CGCCAGAAATCCTTTCCCGG 61.377 60.000 0.00 0.00 40.54 5.73
4632 7369 1.376609 CCAGAAATCCTTTCCCGGCG 61.377 60.000 0.00 0.00 40.54 6.46
4651 7388 0.684479 GGGAATCAAACCCTGGGCTC 60.684 60.000 14.08 0.00 43.65 4.70
4655 7392 1.224003 ATCAAACCCTGGGCTCCCAT 61.224 55.000 14.08 0.00 46.15 4.00
4656 7393 1.380380 CAAACCCTGGGCTCCCATC 60.380 63.158 14.08 0.00 46.15 3.51
4657 7394 1.856873 AAACCCTGGGCTCCCATCA 60.857 57.895 14.08 0.00 46.15 3.07
4678 7490 0.038310 GACCCTTGCCACTAAGCCTT 59.962 55.000 0.00 0.00 0.00 4.35
4679 7491 0.251341 ACCCTTGCCACTAAGCCTTG 60.251 55.000 0.00 0.00 0.00 3.61
4707 7519 3.677648 CCGTCGGTCGTTGTCCCT 61.678 66.667 2.08 0.00 37.94 4.20
4708 7520 2.430244 CGTCGGTCGTTGTCCCTG 60.430 66.667 0.00 0.00 34.52 4.45
4709 7521 2.737376 GTCGGTCGTTGTCCCTGC 60.737 66.667 0.00 0.00 0.00 4.85
4710 7522 3.998672 TCGGTCGTTGTCCCTGCC 61.999 66.667 0.00 0.00 0.00 4.85
4711 7523 4.003788 CGGTCGTTGTCCCTGCCT 62.004 66.667 0.00 0.00 0.00 4.75
4712 7524 2.358737 GGTCGTTGTCCCTGCCTG 60.359 66.667 0.00 0.00 0.00 4.85
4722 7534 3.644606 CCTGCCTGCACACTCCCT 61.645 66.667 0.00 0.00 0.00 4.20
4753 7576 5.935206 CCATCTAGATGCTCGAGTAGAACTA 59.065 44.000 24.81 12.97 37.49 2.24
4759 7582 6.500041 AGATGCTCGAGTAGAACTATCAAAC 58.500 40.000 15.13 0.00 0.00 2.93
4764 7587 6.258230 TCGAGTAGAACTATCAAACCGAAA 57.742 37.500 0.00 0.00 0.00 3.46
4775 7598 3.750371 TCAAACCGAAATCATCTGGTGT 58.250 40.909 0.00 0.00 35.86 4.16
4780 7603 1.927174 CGAAATCATCTGGTGTCGTCC 59.073 52.381 0.00 0.00 0.00 4.79
4781 7604 2.417379 CGAAATCATCTGGTGTCGTCCT 60.417 50.000 0.00 0.00 0.00 3.85
4782 7605 3.181490 CGAAATCATCTGGTGTCGTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
4789 7612 1.816835 CTGGTGTCGTCCTACTTGCTA 59.183 52.381 0.00 0.00 0.00 3.49
4802 7625 1.337260 ACTTGCTACTTGCTGACCTCG 60.337 52.381 0.00 0.00 43.37 4.63
4810 7633 2.563179 ACTTGCTGACCTCGTAGACAAT 59.437 45.455 0.00 0.00 0.00 2.71
4847 7683 3.357079 CAACCGTGCACCTCCAGC 61.357 66.667 12.15 0.00 0.00 4.85
4848 7684 3.560251 AACCGTGCACCTCCAGCT 61.560 61.111 12.15 0.00 0.00 4.24
4853 7689 1.078848 GTGCACCTCCAGCTCGATT 60.079 57.895 5.22 0.00 0.00 3.34
4854 7690 1.078918 TGCACCTCCAGCTCGATTG 60.079 57.895 0.00 0.00 0.00 2.67
4855 7691 2.467826 GCACCTCCAGCTCGATTGC 61.468 63.158 0.37 0.37 0.00 3.56
4856 7692 1.078918 CACCTCCAGCTCGATTGCA 60.079 57.895 0.00 0.00 34.99 4.08
4857 7693 0.463295 CACCTCCAGCTCGATTGCAT 60.463 55.000 0.00 0.00 34.99 3.96
4859 7695 1.647629 CTCCAGCTCGATTGCATGC 59.352 57.895 11.82 11.82 34.99 4.06
4860 7696 0.814410 CTCCAGCTCGATTGCATGCT 60.814 55.000 20.33 0.00 36.04 3.79
4861 7697 4.998294 CAGCTCGATTGCATGCTG 57.002 55.556 20.33 7.57 45.15 4.41
4862 7698 2.095750 CAGCTCGATTGCATGCTGT 58.904 52.632 20.33 7.21 45.31 4.40
4864 7700 0.392060 AGCTCGATTGCATGCTGTCA 60.392 50.000 20.33 0.25 34.19 3.58
4876 7712 1.445871 TGCTGTCATGAGTGTGATGC 58.554 50.000 0.00 0.00 33.82 3.91
4878 7714 1.947212 GCTGTCATGAGTGTGATGCCA 60.947 52.381 0.00 0.00 0.00 4.92
4879 7715 2.429478 CTGTCATGAGTGTGATGCCAA 58.571 47.619 0.00 0.00 0.00 4.52
4880 7716 3.014623 CTGTCATGAGTGTGATGCCAAT 58.985 45.455 0.00 0.00 0.00 3.16
4881 7717 3.423749 TGTCATGAGTGTGATGCCAATT 58.576 40.909 0.00 0.00 0.00 2.32
4883 7719 5.008980 TGTCATGAGTGTGATGCCAATTAA 58.991 37.500 0.00 0.00 0.00 1.40
4884 7720 5.476254 TGTCATGAGTGTGATGCCAATTAAA 59.524 36.000 0.00 0.00 0.00 1.52
4885 7721 6.032094 GTCATGAGTGTGATGCCAATTAAAG 58.968 40.000 0.00 0.00 0.00 1.85
4886 7722 5.711506 TCATGAGTGTGATGCCAATTAAAGT 59.288 36.000 0.00 0.00 0.00 2.66
4887 7723 6.883756 TCATGAGTGTGATGCCAATTAAAGTA 59.116 34.615 0.00 0.00 0.00 2.24
4888 7724 6.741992 TGAGTGTGATGCCAATTAAAGTAG 57.258 37.500 0.00 0.00 0.00 2.57
4889 7725 6.472016 TGAGTGTGATGCCAATTAAAGTAGA 58.528 36.000 0.00 0.00 0.00 2.59
4890 7726 7.112122 TGAGTGTGATGCCAATTAAAGTAGAT 58.888 34.615 0.00 0.00 0.00 1.98
4891 7727 7.066163 TGAGTGTGATGCCAATTAAAGTAGATG 59.934 37.037 0.00 0.00 0.00 2.90
4892 7728 6.886459 AGTGTGATGCCAATTAAAGTAGATGT 59.114 34.615 0.00 0.00 0.00 3.06
4893 7729 7.394359 AGTGTGATGCCAATTAAAGTAGATGTT 59.606 33.333 0.00 0.00 0.00 2.71
4894 7730 7.485913 GTGTGATGCCAATTAAAGTAGATGTTG 59.514 37.037 0.00 0.00 0.00 3.33
4895 7731 6.974622 GTGATGCCAATTAAAGTAGATGTTGG 59.025 38.462 0.00 0.00 39.20 3.77
4896 7732 5.913137 TGCCAATTAAAGTAGATGTTGGG 57.087 39.130 0.00 0.00 37.24 4.12
4897 7733 5.329399 TGCCAATTAAAGTAGATGTTGGGT 58.671 37.500 0.00 0.00 37.24 4.51
4898 7734 6.486056 TGCCAATTAAAGTAGATGTTGGGTA 58.514 36.000 0.00 0.00 37.24 3.69
4899 7735 6.376018 TGCCAATTAAAGTAGATGTTGGGTAC 59.624 38.462 0.00 0.00 37.24 3.34
4900 7736 6.376018 GCCAATTAAAGTAGATGTTGGGTACA 59.624 38.462 0.00 0.00 41.97 2.90
4901 7737 7.415206 GCCAATTAAAGTAGATGTTGGGTACAG 60.415 40.741 0.00 0.00 40.83 2.74
4902 7738 7.067008 CCAATTAAAGTAGATGTTGGGTACAGG 59.933 40.741 0.00 0.00 40.83 4.00
4903 7739 6.938698 TTAAAGTAGATGTTGGGTACAGGA 57.061 37.500 0.00 0.00 40.83 3.86
4926 7762 2.029918 GGACCAATCAAAGCGAGCTTTT 60.030 45.455 19.13 5.23 42.93 2.27
4927 7763 2.982470 GACCAATCAAAGCGAGCTTTTG 59.018 45.455 19.13 14.90 42.93 2.44
4928 7764 2.362077 ACCAATCAAAGCGAGCTTTTGT 59.638 40.909 19.13 9.03 42.93 2.83
4929 7765 2.982470 CCAATCAAAGCGAGCTTTTGTC 59.018 45.455 19.13 0.00 42.93 3.18
4930 7766 3.304928 CCAATCAAAGCGAGCTTTTGTCT 60.305 43.478 19.13 3.44 42.93 3.41
4931 7767 3.549299 ATCAAAGCGAGCTTTTGTCTG 57.451 42.857 19.13 9.73 42.93 3.51
4932 7768 2.560504 TCAAAGCGAGCTTTTGTCTGA 58.439 42.857 19.13 11.77 42.93 3.27
4933 7769 2.545526 TCAAAGCGAGCTTTTGTCTGAG 59.454 45.455 19.13 7.69 42.93 3.35
4934 7770 2.246719 AAGCGAGCTTTTGTCTGAGT 57.753 45.000 4.26 0.00 31.29 3.41
4935 7771 1.506493 AGCGAGCTTTTGTCTGAGTG 58.494 50.000 0.00 0.00 0.00 3.51
4936 7772 1.069204 AGCGAGCTTTTGTCTGAGTGA 59.931 47.619 0.00 0.00 0.00 3.41
4937 7773 1.458827 GCGAGCTTTTGTCTGAGTGAG 59.541 52.381 0.00 0.00 0.00 3.51
4938 7774 1.458827 CGAGCTTTTGTCTGAGTGAGC 59.541 52.381 0.00 0.00 0.00 4.26
4939 7775 2.487934 GAGCTTTTGTCTGAGTGAGCA 58.512 47.619 0.00 0.00 32.78 4.26
4940 7776 3.072944 GAGCTTTTGTCTGAGTGAGCAT 58.927 45.455 0.00 0.00 32.78 3.79
4941 7777 3.072944 AGCTTTTGTCTGAGTGAGCATC 58.927 45.455 0.00 0.00 32.78 3.91
4942 7778 2.161211 GCTTTTGTCTGAGTGAGCATCC 59.839 50.000 0.00 0.00 0.00 3.51
4943 7779 2.479566 TTTGTCTGAGTGAGCATCCC 57.520 50.000 0.00 0.00 0.00 3.85
4966 7802 2.916527 CTTTGCGCATGGGGAGGGAT 62.917 60.000 12.75 0.00 0.00 3.85
4970 7806 2.524559 GCATGGGGAGGGATGCAT 59.475 61.111 0.00 0.00 43.75 3.96
4971 7807 1.769665 GCATGGGGAGGGATGCATA 59.230 57.895 0.00 0.00 43.75 3.14
4972 7808 0.333993 GCATGGGGAGGGATGCATAT 59.666 55.000 0.00 0.00 43.75 1.78
4973 7809 1.565759 GCATGGGGAGGGATGCATATA 59.434 52.381 0.00 0.00 43.75 0.86
4974 7810 2.176364 GCATGGGGAGGGATGCATATAT 59.824 50.000 0.00 0.00 43.75 0.86
4976 7812 3.219308 TGGGGAGGGATGCATATATCA 57.781 47.619 0.00 0.00 0.00 2.15
4977 7813 3.751407 TGGGGAGGGATGCATATATCAT 58.249 45.455 0.00 0.00 0.00 2.45
4978 7814 3.460712 TGGGGAGGGATGCATATATCATG 59.539 47.826 0.00 0.00 0.00 3.07
4979 7815 3.181436 GGGGAGGGATGCATATATCATGG 60.181 52.174 0.00 0.00 0.00 3.66
5012 7850 4.686972 CAGAGAGAATAATCAGCAACGGA 58.313 43.478 0.00 0.00 0.00 4.69
5024 7862 7.545362 AATCAGCAACGGATATATTATCAGC 57.455 36.000 0.00 0.00 0.00 4.26
5025 7863 6.286240 TCAGCAACGGATATATTATCAGCT 57.714 37.500 0.00 0.00 0.00 4.24
5026 7864 7.404671 TCAGCAACGGATATATTATCAGCTA 57.595 36.000 0.00 0.00 0.00 3.32
5027 7865 7.258441 TCAGCAACGGATATATTATCAGCTAC 58.742 38.462 0.00 0.00 0.00 3.58
5028 7866 6.477033 CAGCAACGGATATATTATCAGCTACC 59.523 42.308 0.00 0.00 0.00 3.18
5029 7867 6.154534 AGCAACGGATATATTATCAGCTACCA 59.845 38.462 0.00 0.00 0.00 3.25
5030 7868 6.986817 GCAACGGATATATTATCAGCTACCAT 59.013 38.462 0.00 0.00 0.00 3.55
5031 7869 7.042456 GCAACGGATATATTATCAGCTACCATG 60.042 40.741 0.00 0.00 0.00 3.66
5032 7870 7.661536 ACGGATATATTATCAGCTACCATGT 57.338 36.000 0.00 0.00 0.00 3.21
5033 7871 7.492524 ACGGATATATTATCAGCTACCATGTG 58.507 38.462 0.00 0.00 0.00 3.21
5034 7872 7.124298 ACGGATATATTATCAGCTACCATGTGT 59.876 37.037 0.00 0.00 0.00 3.72
5035 7873 8.630037 CGGATATATTATCAGCTACCATGTGTA 58.370 37.037 0.00 0.00 0.00 2.90
5039 7877 3.912496 ATCAGCTACCATGTGTAAGCA 57.088 42.857 8.09 0.00 0.00 3.91
5066 7908 2.491693 TGCCTTTGAATGATTCGTTCCC 59.508 45.455 14.52 1.48 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.501828 ACATATTCAACAGCGTTGCAAGA 59.498 39.130 0.00 8.80 0.00 3.02
8 9 3.913548 ACATATTCAACAGCGTTGCAA 57.086 38.095 14.08 0.00 0.00 4.08
35 36 2.622942 ACATCGTTGCCAAGTTTCATGT 59.377 40.909 0.00 0.00 0.00 3.21
118 120 4.488126 CTCAACGGAGCTCAAATTTTGA 57.512 40.909 17.19 13.72 33.87 2.69
203 205 6.932356 AGTGTATTTATGATGTCTTGGCAG 57.068 37.500 0.00 0.00 0.00 4.85
257 259 1.705256 TGGCGTGACATTTCTACGTC 58.295 50.000 0.00 0.00 42.24 4.34
260 262 3.861569 GCTATGGCGTGACATTTCTAC 57.138 47.619 0.00 0.00 32.39 2.59
285 287 0.730265 TCGTTGTTGCAACCACTGTC 59.270 50.000 25.85 10.91 0.00 3.51
303 305 1.135402 GGACGGTTTGTGCCATTGATC 60.135 52.381 0.00 0.00 31.75 2.92
306 308 4.963815 GGACGGTTTGTGCCATTG 57.036 55.556 0.00 0.00 31.75 2.82
328 330 2.309528 TCTCGCAGTCTTTGTGTTGT 57.690 45.000 0.00 0.00 38.46 3.32
338 340 2.755650 TGAAGAACCTTTCTCGCAGTC 58.244 47.619 0.00 0.00 39.61 3.51
351 353 7.657761 TCTCTAGAGACATTGGTTTTGAAGAAC 59.342 37.037 18.76 0.00 31.41 3.01
356 358 7.735917 TCTTTCTCTAGAGACATTGGTTTTGA 58.264 34.615 22.25 4.26 37.14 2.69
366 368 4.437524 CGCGTCATTCTTTCTCTAGAGACA 60.438 45.833 22.25 14.96 37.14 3.41
372 374 2.647529 TGCGCGTCATTCTTTCTCTA 57.352 45.000 8.43 0.00 0.00 2.43
373 375 1.795768 TTGCGCGTCATTCTTTCTCT 58.204 45.000 8.43 0.00 0.00 3.10
374 376 2.234187 GTTTGCGCGTCATTCTTTCTC 58.766 47.619 8.43 0.00 0.00 2.87
386 388 2.126888 GATGGTGGTGTTTGCGCG 60.127 61.111 0.00 0.00 0.00 6.86
388 390 2.126888 GCGATGGTGGTGTTTGCG 60.127 61.111 0.00 0.00 0.00 4.85
416 418 5.628797 AAACCATGATTTGACCTTTGGTT 57.371 34.783 0.00 0.00 46.49 3.67
437 439 3.243907 CGCACTTGGGTTGGGAATAAAAA 60.244 43.478 0.00 0.00 0.00 1.94
446 448 0.248866 GTTGTTCGCACTTGGGTTGG 60.249 55.000 0.00 0.00 0.00 3.77
451 453 2.842208 TTTGAGTTGTTCGCACTTGG 57.158 45.000 0.00 0.00 0.00 3.61
455 457 3.301771 GCATTGTTTTGAGTTGTTCGCAC 60.302 43.478 0.00 0.00 0.00 5.34
478 480 2.167693 CCATCTTGTTGAAGGCATGCAT 59.832 45.455 21.36 10.32 0.00 3.96
479 481 1.546923 CCATCTTGTTGAAGGCATGCA 59.453 47.619 21.36 0.00 0.00 3.96
480 482 2.288961 CCATCTTGTTGAAGGCATGC 57.711 50.000 9.90 9.90 0.00 4.06
485 487 2.086869 ACGATGCCATCTTGTTGAAGG 58.913 47.619 2.75 0.00 36.67 3.46
495 497 1.139520 GGGTTTGCACGATGCCATC 59.860 57.895 7.38 0.00 44.23 3.51
498 500 2.988684 TGGGGTTTGCACGATGCC 60.989 61.111 7.38 0.00 44.23 4.40
499 501 2.081425 TTGTGGGGTTTGCACGATGC 62.081 55.000 0.00 0.00 45.29 3.91
503 505 1.220817 GCAATTGTGGGGTTTGCACG 61.221 55.000 7.40 0.00 43.95 5.34
504 506 0.106521 AGCAATTGTGGGGTTTGCAC 59.893 50.000 7.40 0.00 46.28 4.57
505 507 1.617850 CTAGCAATTGTGGGGTTTGCA 59.382 47.619 7.40 0.00 46.28 4.08
506 508 1.066929 CCTAGCAATTGTGGGGTTTGC 60.067 52.381 7.40 0.00 44.67 3.68
507 509 2.247358 ACCTAGCAATTGTGGGGTTTG 58.753 47.619 7.40 0.00 0.00 2.93
540 544 5.064707 CCAGGTGAGAACCGTATGTTTAATG 59.935 44.000 0.00 0.00 37.29 1.90
542 546 4.283978 TCCAGGTGAGAACCGTATGTTTAA 59.716 41.667 0.00 0.00 37.29 1.52
548 552 0.824759 GCTCCAGGTGAGAACCGTAT 59.175 55.000 0.00 0.00 44.42 3.06
549 553 0.541063 TGCTCCAGGTGAGAACCGTA 60.541 55.000 0.00 0.00 44.42 4.02
551 555 0.671781 CTTGCTCCAGGTGAGAACCG 60.672 60.000 0.00 0.00 44.42 4.44
556 560 3.008330 CTGATTTCTTGCTCCAGGTGAG 58.992 50.000 0.00 0.00 44.47 3.51
583 587 1.067821 GCTTGATGGCGCTACTCTAGT 59.932 52.381 7.64 0.00 0.00 2.57
587 647 0.744414 TTGGCTTGATGGCGCTACTC 60.744 55.000 7.64 2.14 45.14 2.59
619 679 3.730761 CGTGCCAGGTCAGCAAGC 61.731 66.667 0.00 0.00 43.02 4.01
633 693 1.215647 GGCCAGGAGTACTGTCGTG 59.784 63.158 0.00 0.00 46.06 4.35
649 710 1.668151 GTGTCGTCCTGGTCAAGGC 60.668 63.158 0.00 0.00 46.92 4.35
654 715 0.319641 GACCAAGTGTCGTCCTGGTC 60.320 60.000 4.46 4.46 38.93 4.02
669 730 1.134936 ACATATACTTGCACGCGACCA 60.135 47.619 15.93 6.18 0.00 4.02
688 784 0.248377 GCATTGCAATCGAGCTGGAC 60.248 55.000 9.53 0.00 34.99 4.02
703 799 0.610174 TTCTCTCGCTGTCTGGCATT 59.390 50.000 0.00 0.00 0.00 3.56
708 804 1.815613 TCTCCTTTCTCTCGCTGTCTG 59.184 52.381 0.00 0.00 0.00 3.51
724 820 4.021016 TCAAACCTTGCTCTCTACTTCTCC 60.021 45.833 0.00 0.00 0.00 3.71
731 827 5.854010 ATCGTATCAAACCTTGCTCTCTA 57.146 39.130 0.00 0.00 0.00 2.43
764 860 0.743097 GGATGCTGGATCACTTTGCC 59.257 55.000 11.36 0.00 31.91 4.52
765 861 0.743097 GGGATGCTGGATCACTTTGC 59.257 55.000 11.36 0.00 30.86 3.68
797 893 1.435168 GGGATACTCCTCTCTCCCCAT 59.565 57.143 0.00 0.00 41.35 4.00
809 905 3.689649 ACGCAACAAAGAATGGGATACTC 59.310 43.478 0.00 0.00 34.03 2.59
850 946 8.733458 TGCTTGCTAAATATATCCATTGCTAAG 58.267 33.333 0.00 0.00 0.00 2.18
871 967 2.720578 CACGTTGCTTTACACATGCTTG 59.279 45.455 0.00 0.00 0.00 4.01
1006 1107 7.451877 CACTATGTATACCACTTCCCAGTAGAT 59.548 40.741 0.00 0.00 0.00 1.98
1009 1110 5.303589 GCACTATGTATACCACTTCCCAGTA 59.696 44.000 0.00 0.00 0.00 2.74
1011 1112 4.632153 GCACTATGTATACCACTTCCCAG 58.368 47.826 0.00 0.00 0.00 4.45
1015 1116 4.743644 GGAACGCACTATGTATACCACTTC 59.256 45.833 0.00 0.00 0.00 3.01
1018 1119 3.387397 GGGAACGCACTATGTATACCAC 58.613 50.000 0.00 0.00 0.00 4.16
1019 1120 2.366266 GGGGAACGCACTATGTATACCA 59.634 50.000 0.00 0.00 42.57 3.25
1020 1121 3.036075 GGGGAACGCACTATGTATACC 57.964 52.381 0.00 0.00 42.57 2.73
1455 1628 1.600638 CATGAGAGCCAGCAGGTCA 59.399 57.895 8.43 0.00 45.87 4.02
2002 2277 3.119849 GGCACCAACACAATGTAGATGAC 60.120 47.826 0.00 0.00 0.00 3.06
2064 2348 4.141144 CCAACACAGGCAACGAGT 57.859 55.556 0.00 0.00 46.39 4.18
2096 2380 3.800628 GCAACTTCTTGCCCATCAC 57.199 52.632 0.00 0.00 46.27 3.06
2114 2796 1.325640 CGATGTTGATTGTCCTCGCTG 59.674 52.381 0.00 0.00 0.00 5.18
2157 2926 5.862924 TTTCTTCGATGTTGATTGTCCTC 57.137 39.130 0.00 0.00 0.00 3.71
2277 3046 0.811219 TGCGATTCTGATGCCCTTCG 60.811 55.000 0.00 0.00 0.00 3.79
2382 3562 3.245284 GGACGATGATGATAACAACCACG 59.755 47.826 0.00 0.00 0.00 4.94
2388 3568 3.384467 TGCTCTGGACGATGATGATAACA 59.616 43.478 0.00 0.00 0.00 2.41
2621 3825 2.349755 GGGGGAGCAACGCTACAA 59.650 61.111 0.00 0.00 42.18 2.41
2678 3900 0.669077 CTCGTCGGGGAGGTTGATAG 59.331 60.000 0.00 0.00 0.00 2.08
2769 4012 2.744768 CGCCGCTTCTTCTCCTTGC 61.745 63.158 0.00 0.00 0.00 4.01
2775 4027 1.639298 GAACATGCGCCGCTTCTTCT 61.639 55.000 11.67 0.00 0.00 2.85
2776 4028 1.226128 GAACATGCGCCGCTTCTTC 60.226 57.895 11.67 3.75 0.00 2.87
2780 4032 3.434319 CAGGAACATGCGCCGCTT 61.434 61.111 11.67 0.00 0.00 4.68
2881 5365 4.686972 TCAAGAATACGCTCAGATCCAAG 58.313 43.478 0.00 0.00 0.00 3.61
2882 5366 4.736126 TCAAGAATACGCTCAGATCCAA 57.264 40.909 0.00 0.00 0.00 3.53
3351 5895 0.678048 GGCACTTAGGGAGGCACTTG 60.678 60.000 0.00 0.00 41.55 3.16
3374 5969 2.146342 ACAATGTCTCAAACAGCCTCG 58.854 47.619 0.00 0.00 42.37 4.63
3738 6387 1.956170 CTGCTTCTTCGTGGTGCGT 60.956 57.895 0.00 0.00 42.13 5.24
3885 6555 1.668151 GGTGAAGACGACCACTGCC 60.668 63.158 0.00 0.00 33.25 4.85
3888 6558 1.410004 TCAAGGTGAAGACGACCACT 58.590 50.000 0.00 0.00 35.76 4.00
3942 6613 2.665603 GTGAGCTCCTCGGCCTTT 59.334 61.111 12.15 0.00 32.35 3.11
3993 6673 1.141881 ATTGCGTGCTCCCGAGTAG 59.858 57.895 0.00 0.00 0.00 2.57
4128 6846 1.473677 TGCAAATCAAGGGAATGCTCG 59.526 47.619 0.00 0.00 39.40 5.03
4132 6850 2.232941 AGCACTGCAAATCAAGGGAATG 59.767 45.455 3.30 0.00 0.00 2.67
4149 6867 1.461127 GAGTTGTCCGATCAACAGCAC 59.539 52.381 19.11 4.89 46.78 4.40
4155 6873 5.400066 TCTTACATGAGTTGTCCGATCAA 57.600 39.130 0.00 0.00 39.87 2.57
4266 6984 5.944599 TGTACACAGGTAGTTTGTTTTTCCA 59.055 36.000 0.00 0.00 0.00 3.53
4268 6986 8.803799 CAAATGTACACAGGTAGTTTGTTTTTC 58.196 33.333 0.00 0.00 34.63 2.29
4309 7028 9.353999 ACTAAACAATTGAAAACTGAACTGAAC 57.646 29.630 13.59 0.00 0.00 3.18
4314 7033 8.696410 TCCAACTAAACAATTGAAAACTGAAC 57.304 30.769 13.59 0.00 0.00 3.18
4416 7136 3.316868 CCGGTAAAACTCTGCCAGAAAAA 59.683 43.478 0.00 0.00 0.00 1.94
4461 7183 4.278170 TCTGTTTCGTGCAATCCAAAATCT 59.722 37.500 0.00 0.00 0.00 2.40
4473 7195 3.933155 AATCGATCATCTGTTTCGTGC 57.067 42.857 0.00 0.00 34.60 5.34
4474 7196 5.454736 TCAAATCGATCATCTGTTTCGTG 57.545 39.130 0.00 0.00 34.60 4.35
4476 7198 6.125419 GTCATCAAATCGATCATCTGTTTCG 58.875 40.000 0.00 0.00 29.21 3.46
4494 7216 5.956068 TTTCATCCGTTGAAATGTCATCA 57.044 34.783 6.66 0.00 46.80 3.07
4508 7230 8.226448 GCAGATAATTGACTATCTTTTCATCCG 58.774 37.037 0.00 0.00 36.66 4.18
4509 7231 9.060347 TGCAGATAATTGACTATCTTTTCATCC 57.940 33.333 0.00 0.00 36.66 3.51
4518 7240 7.816995 CCTACTTCCTGCAGATAATTGACTATC 59.183 40.741 17.39 0.00 0.00 2.08
4523 7245 5.899547 TCTCCTACTTCCTGCAGATAATTGA 59.100 40.000 17.39 0.00 0.00 2.57
4532 7254 2.111384 GTGGATCTCCTACTTCCTGCA 58.889 52.381 0.00 0.00 36.82 4.41
4536 7258 5.561679 ACTTTTTGTGGATCTCCTACTTCC 58.438 41.667 0.00 0.00 36.82 3.46
4540 7262 5.351740 GTGCTACTTTTTGTGGATCTCCTAC 59.648 44.000 0.00 0.00 36.82 3.18
4543 7280 3.440522 GGTGCTACTTTTTGTGGATCTCC 59.559 47.826 0.00 0.00 0.00 3.71
4552 7289 2.229792 TGCTCTGGGTGCTACTTTTTG 58.770 47.619 0.00 0.00 0.00 2.44
4553 7290 2.656947 TGCTCTGGGTGCTACTTTTT 57.343 45.000 0.00 0.00 0.00 1.94
4556 7293 8.646004 CATATATATATGCTCTGGGTGCTACTT 58.354 37.037 17.65 0.00 34.37 2.24
4558 7295 7.957002 ACATATATATATGCTCTGGGTGCTAC 58.043 38.462 26.04 0.00 42.98 3.58
4576 7313 7.092399 GGGTGGGCTCCTTCTATAAACATATAT 60.092 40.741 0.00 0.00 0.00 0.86
4578 7315 5.014228 GGGTGGGCTCCTTCTATAAACATAT 59.986 44.000 0.00 0.00 0.00 1.78
4582 7319 2.508300 TGGGTGGGCTCCTTCTATAAAC 59.492 50.000 0.00 0.00 0.00 2.01
4583 7320 2.777692 CTGGGTGGGCTCCTTCTATAAA 59.222 50.000 0.00 0.00 0.00 1.40
4584 7321 2.408565 CTGGGTGGGCTCCTTCTATAA 58.591 52.381 0.00 0.00 0.00 0.98
4585 7322 1.414538 CCTGGGTGGGCTCCTTCTATA 60.415 57.143 0.00 0.00 0.00 1.31
4586 7323 0.695803 CCTGGGTGGGCTCCTTCTAT 60.696 60.000 0.00 0.00 0.00 1.98
4587 7324 1.306997 CCTGGGTGGGCTCCTTCTA 60.307 63.158 0.00 0.00 0.00 2.10
4588 7325 2.612115 CCTGGGTGGGCTCCTTCT 60.612 66.667 0.00 0.00 0.00 2.85
4589 7326 2.936032 ACCTGGGTGGGCTCCTTC 60.936 66.667 0.00 0.00 41.11 3.46
4593 7330 1.527370 GTATCACCTGGGTGGGCTC 59.473 63.158 18.26 5.08 45.43 4.70
4627 7364 3.138128 GGGTTTGATTCCCGCCGG 61.138 66.667 0.00 0.00 35.27 6.13
4632 7369 0.684479 GAGCCCAGGGTTTGATTCCC 60.684 60.000 7.55 0.00 44.90 3.97
4651 7388 2.438434 GGCAAGGGTCGTGATGGG 60.438 66.667 0.00 0.00 0.00 4.00
4655 7392 0.320374 CTTAGTGGCAAGGGTCGTGA 59.680 55.000 0.00 0.00 0.00 4.35
4656 7393 1.298859 GCTTAGTGGCAAGGGTCGTG 61.299 60.000 0.00 0.00 0.00 4.35
4657 7394 1.003718 GCTTAGTGGCAAGGGTCGT 60.004 57.895 0.00 0.00 0.00 4.34
4692 7504 2.737376 GCAGGGACAACGACCGAC 60.737 66.667 0.00 0.00 0.00 4.79
4693 7505 3.998672 GGCAGGGACAACGACCGA 61.999 66.667 0.00 0.00 0.00 4.69
4694 7506 4.003788 AGGCAGGGACAACGACCG 62.004 66.667 0.00 0.00 0.00 4.79
4695 7507 2.358737 CAGGCAGGGACAACGACC 60.359 66.667 0.00 0.00 0.00 4.79
4696 7508 3.050275 GCAGGCAGGGACAACGAC 61.050 66.667 0.00 0.00 0.00 4.34
4697 7509 3.555324 TGCAGGCAGGGACAACGA 61.555 61.111 0.00 0.00 0.00 3.85
4700 7512 2.203337 GTGTGCAGGCAGGGACAA 60.203 61.111 5.19 0.00 40.90 3.18
4701 7513 3.170672 AGTGTGCAGGCAGGGACA 61.171 61.111 0.00 0.00 36.73 4.02
4702 7514 2.359230 GAGTGTGCAGGCAGGGAC 60.359 66.667 0.00 0.00 0.00 4.46
4705 7517 2.293318 TAGGGAGTGTGCAGGCAGG 61.293 63.158 0.00 0.00 0.00 4.85
4706 7518 1.078848 GTAGGGAGTGTGCAGGCAG 60.079 63.158 0.00 0.00 0.00 4.85
4707 7519 1.536418 AGTAGGGAGTGTGCAGGCA 60.536 57.895 0.00 0.00 0.00 4.75
4708 7520 1.219393 GAGTAGGGAGTGTGCAGGC 59.781 63.158 0.00 0.00 0.00 4.85
4709 7521 1.513158 CGAGTAGGGAGTGTGCAGG 59.487 63.158 0.00 0.00 0.00 4.85
4710 7522 1.513158 CCGAGTAGGGAGTGTGCAG 59.487 63.158 0.00 0.00 35.97 4.41
4711 7523 2.646175 GCCGAGTAGGGAGTGTGCA 61.646 63.158 0.00 0.00 41.48 4.57
4712 7524 2.184579 GCCGAGTAGGGAGTGTGC 59.815 66.667 0.00 0.00 41.48 4.57
4722 7534 2.163509 GAGCATCTAGATGGCCGAGTA 58.836 52.381 29.43 0.00 39.16 2.59
4753 7576 4.335416 ACACCAGATGATTTCGGTTTGAT 58.665 39.130 0.00 0.00 31.60 2.57
4759 7582 1.927174 GACGACACCAGATGATTTCGG 59.073 52.381 0.00 0.00 0.00 4.30
4764 7587 3.019799 AGTAGGACGACACCAGATGAT 57.980 47.619 0.00 0.00 0.00 2.45
4775 7598 2.649331 GCAAGTAGCAAGTAGGACGA 57.351 50.000 0.00 0.00 44.79 4.20
4789 7612 1.617322 TGTCTACGAGGTCAGCAAGT 58.383 50.000 0.00 0.00 0.00 3.16
4810 7633 2.179767 CGCGACCCACATGACGTA 59.820 61.111 0.00 0.00 0.00 3.57
4836 7672 1.078918 CAATCGAGCTGGAGGTGCA 60.079 57.895 4.31 0.00 0.00 4.57
4837 7673 2.467826 GCAATCGAGCTGGAGGTGC 61.468 63.158 17.47 17.47 0.00 5.01
4838 7674 0.463295 ATGCAATCGAGCTGGAGGTG 60.463 55.000 4.31 6.23 34.99 4.00
4839 7675 0.463295 CATGCAATCGAGCTGGAGGT 60.463 55.000 4.31 0.00 34.99 3.85
4841 7677 0.814410 AGCATGCAATCGAGCTGGAG 60.814 55.000 21.98 0.00 35.72 3.86
4842 7678 1.222661 AGCATGCAATCGAGCTGGA 59.777 52.632 21.98 0.00 35.72 3.86
4843 7679 3.823402 AGCATGCAATCGAGCTGG 58.177 55.556 21.98 0.00 35.72 4.85
4845 7681 0.392060 TGACAGCATGCAATCGAGCT 60.392 50.000 21.98 0.00 42.53 4.09
4846 7682 0.661552 ATGACAGCATGCAATCGAGC 59.338 50.000 21.98 2.22 42.53 5.03
4847 7683 2.384899 CATGACAGCATGCAATCGAG 57.615 50.000 21.98 9.06 44.76 4.04
4856 7692 2.014857 GCATCACACTCATGACAGCAT 58.985 47.619 0.00 0.00 34.65 3.79
4857 7693 1.445871 GCATCACACTCATGACAGCA 58.554 50.000 0.00 0.00 34.65 4.41
4859 7695 2.103537 TGGCATCACACTCATGACAG 57.896 50.000 0.00 0.00 34.12 3.51
4860 7696 2.565046 TTGGCATCACACTCATGACA 57.435 45.000 0.00 0.00 37.51 3.58
4861 7697 5.565592 TTAATTGGCATCACACTCATGAC 57.434 39.130 0.00 0.00 0.00 3.06
4862 7698 5.711506 ACTTTAATTGGCATCACACTCATGA 59.288 36.000 0.00 0.00 0.00 3.07
4864 7700 7.112122 TCTACTTTAATTGGCATCACACTCAT 58.888 34.615 0.00 0.00 0.00 2.90
4866 7702 6.985188 TCTACTTTAATTGGCATCACACTC 57.015 37.500 0.00 0.00 0.00 3.51
4867 7703 6.886459 ACATCTACTTTAATTGGCATCACACT 59.114 34.615 0.00 0.00 0.00 3.55
4868 7704 7.088589 ACATCTACTTTAATTGGCATCACAC 57.911 36.000 0.00 0.00 0.00 3.82
4869 7705 7.362834 CCAACATCTACTTTAATTGGCATCACA 60.363 37.037 0.00 0.00 30.94 3.58
4872 7708 6.096846 ACCCAACATCTACTTTAATTGGCATC 59.903 38.462 0.00 0.00 36.15 3.91
4873 7709 5.957774 ACCCAACATCTACTTTAATTGGCAT 59.042 36.000 0.00 0.00 36.15 4.40
4874 7710 5.329399 ACCCAACATCTACTTTAATTGGCA 58.671 37.500 0.00 0.00 36.15 4.92
4875 7711 5.914898 ACCCAACATCTACTTTAATTGGC 57.085 39.130 0.00 0.00 36.15 4.52
4876 7712 7.067008 CCTGTACCCAACATCTACTTTAATTGG 59.933 40.741 0.00 0.00 37.50 3.16
4878 7714 7.924541 TCCTGTACCCAACATCTACTTTAATT 58.075 34.615 0.00 0.00 37.50 1.40
4879 7715 7.365652 CCTCCTGTACCCAACATCTACTTTAAT 60.366 40.741 0.00 0.00 37.50 1.40
4880 7716 6.070424 CCTCCTGTACCCAACATCTACTTTAA 60.070 42.308 0.00 0.00 37.50 1.52
4881 7717 5.424252 CCTCCTGTACCCAACATCTACTTTA 59.576 44.000 0.00 0.00 37.50 1.85
4883 7719 3.775316 CCTCCTGTACCCAACATCTACTT 59.225 47.826 0.00 0.00 37.50 2.24
4884 7720 3.375699 CCTCCTGTACCCAACATCTACT 58.624 50.000 0.00 0.00 37.50 2.57
4885 7721 2.434702 CCCTCCTGTACCCAACATCTAC 59.565 54.545 0.00 0.00 37.50 2.59
4886 7722 2.316677 TCCCTCCTGTACCCAACATCTA 59.683 50.000 0.00 0.00 37.50 1.98
4887 7723 1.080498 TCCCTCCTGTACCCAACATCT 59.920 52.381 0.00 0.00 37.50 2.90
4888 7724 1.209747 GTCCCTCCTGTACCCAACATC 59.790 57.143 0.00 0.00 37.50 3.06
4889 7725 1.286248 GTCCCTCCTGTACCCAACAT 58.714 55.000 0.00 0.00 37.50 2.71
4890 7726 0.838987 GGTCCCTCCTGTACCCAACA 60.839 60.000 0.00 0.00 36.42 3.33
4891 7727 0.838987 TGGTCCCTCCTGTACCCAAC 60.839 60.000 0.00 0.00 37.07 3.77
4892 7728 0.104356 TTGGTCCCTCCTGTACCCAA 60.104 55.000 0.00 0.00 37.07 4.12
4893 7729 0.120377 ATTGGTCCCTCCTGTACCCA 59.880 55.000 0.00 0.00 37.07 4.51
4894 7730 0.837940 GATTGGTCCCTCCTGTACCC 59.162 60.000 0.00 0.00 37.07 3.69
4895 7731 1.580059 TGATTGGTCCCTCCTGTACC 58.420 55.000 0.00 0.00 37.07 3.34
4896 7732 3.610911 CTTTGATTGGTCCCTCCTGTAC 58.389 50.000 0.00 0.00 37.07 2.90
4897 7733 2.026262 GCTTTGATTGGTCCCTCCTGTA 60.026 50.000 0.00 0.00 37.07 2.74
4898 7734 1.272147 GCTTTGATTGGTCCCTCCTGT 60.272 52.381 0.00 0.00 37.07 4.00
4899 7735 1.467920 GCTTTGATTGGTCCCTCCTG 58.532 55.000 0.00 0.00 37.07 3.86
4900 7736 0.035056 CGCTTTGATTGGTCCCTCCT 60.035 55.000 0.00 0.00 37.07 3.69
4901 7737 0.035439 TCGCTTTGATTGGTCCCTCC 60.035 55.000 0.00 0.00 0.00 4.30
4902 7738 1.373570 CTCGCTTTGATTGGTCCCTC 58.626 55.000 0.00 0.00 0.00 4.30
4903 7739 0.678048 GCTCGCTTTGATTGGTCCCT 60.678 55.000 0.00 0.00 0.00 4.20
4926 7762 1.576577 ATGGGATGCTCACTCAGACA 58.423 50.000 0.00 0.00 0.00 3.41
4927 7763 2.170187 AGAATGGGATGCTCACTCAGAC 59.830 50.000 0.00 0.00 0.00 3.51
4928 7764 2.475155 AGAATGGGATGCTCACTCAGA 58.525 47.619 0.00 0.00 0.00 3.27
4929 7765 3.278668 AAGAATGGGATGCTCACTCAG 57.721 47.619 0.00 0.00 0.00 3.35
4930 7766 3.349927 CAAAGAATGGGATGCTCACTCA 58.650 45.455 0.00 0.00 0.00 3.41
4931 7767 2.098770 GCAAAGAATGGGATGCTCACTC 59.901 50.000 0.00 0.00 35.93 3.51
4932 7768 2.097825 GCAAAGAATGGGATGCTCACT 58.902 47.619 0.00 0.00 35.93 3.41
4933 7769 1.202222 CGCAAAGAATGGGATGCTCAC 60.202 52.381 0.00 0.00 44.39 3.51
4934 7770 1.097232 CGCAAAGAATGGGATGCTCA 58.903 50.000 0.00 0.00 44.39 4.26
4935 7771 0.248784 GCGCAAAGAATGGGATGCTC 60.249 55.000 0.30 0.00 44.39 4.26
4936 7772 0.966875 TGCGCAAAGAATGGGATGCT 60.967 50.000 8.16 0.00 44.39 3.79
4937 7773 0.103572 ATGCGCAAAGAATGGGATGC 59.896 50.000 17.11 0.00 44.39 3.91
4938 7774 1.847818 CATGCGCAAAGAATGGGATG 58.152 50.000 17.11 0.00 44.39 3.51
4943 7779 0.101759 CTCCCCATGCGCAAAGAATG 59.898 55.000 17.11 7.74 35.56 2.67
4966 7802 3.198417 ACGGATGCTCCATGATATATGCA 59.802 43.478 0.00 0.00 35.91 3.96
5001 7839 6.882656 AGCTGATAATATATCCGTTGCTGAT 58.117 36.000 0.00 0.00 0.00 2.90
5012 7850 9.823647 GCTTACACATGGTAGCTGATAATATAT 57.176 33.333 0.00 0.00 32.49 0.86
5021 7859 2.094258 CGTTGCTTACACATGGTAGCTG 59.906 50.000 0.00 0.00 32.49 4.24
5022 7860 2.289444 ACGTTGCTTACACATGGTAGCT 60.289 45.455 0.00 0.00 32.49 3.32
5023 7861 2.073816 ACGTTGCTTACACATGGTAGC 58.926 47.619 0.00 0.65 32.49 3.58
5024 7862 3.064207 ACACGTTGCTTACACATGGTAG 58.936 45.455 0.00 0.00 32.49 3.18
5025 7863 2.803386 CACACGTTGCTTACACATGGTA 59.197 45.455 0.00 0.00 0.00 3.25
5026 7864 1.601903 CACACGTTGCTTACACATGGT 59.398 47.619 0.00 0.00 0.00 3.55
5027 7865 2.314561 CACACGTTGCTTACACATGG 57.685 50.000 0.00 0.00 0.00 3.66
5039 7877 3.609175 CGAATCATTCAAAGGCACACGTT 60.609 43.478 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.